Query 043950
Match_columns 458
No_of_seqs 302 out of 2214
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 7E-56 2.4E-60 427.2 46.9 420 24-451 58-482 (510)
2 3tpo_A Importin subunit alpha- 100.0 1.1E-54 3.8E-59 421.4 47.8 421 23-451 76-501 (529)
3 4b8j_A Importin subunit alpha- 100.0 4.7E-49 1.6E-53 383.6 49.2 429 22-452 73-501 (528)
4 1wa5_B Importin alpha subunit; 100.0 4.4E-47 1.5E-51 369.5 49.2 427 22-452 86-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 1E-45 3.5E-50 353.6 44.5 426 24-452 21-448 (450)
6 3ul1_B Importin subunit alpha- 100.0 7.1E-44 2.4E-48 343.5 34.3 389 4-396 81-482 (510)
7 3tpo_A Importin subunit alpha- 100.0 3.9E-43 1.3E-47 340.5 36.9 389 4-396 100-501 (529)
8 1wa5_B Importin alpha subunit; 100.0 1.7E-38 5.7E-43 309.2 37.1 375 18-396 125-514 (530)
9 3now_A UNC-45 protein, SD10334 100.0 1.5E-39 5.1E-44 319.2 29.6 367 23-397 377-787 (810)
10 4b8j_A Importin subunit alpha- 100.0 9E-39 3.1E-43 311.2 34.7 378 14-396 108-500 (528)
11 1jdh_A Beta-catenin; beta-cate 100.0 5E-38 1.7E-42 306.6 38.5 404 19-445 97-528 (529)
12 1xm9_A Plakophilin 1; armadill 100.0 9.2E-39 3.1E-43 303.1 31.0 367 67-452 3-454 (457)
13 2jdq_A Importin alpha-1 subuni 100.0 2.1E-38 7.3E-43 302.9 33.1 368 23-395 64-446 (450)
14 3nmz_A APC variant protein; pr 100.0 8.8E-39 3E-43 297.6 28.7 372 17-395 26-453 (458)
15 3now_A UNC-45 protein, SD10334 100.0 9.9E-38 3.4E-42 306.3 35.0 407 21-448 288-738 (810)
16 1xm9_A Plakophilin 1; armadill 100.0 7.2E-39 2.5E-43 303.9 25.4 362 24-394 3-451 (457)
17 2z6h_A Catenin beta-1, beta-ca 100.0 1.1E-36 3.8E-41 302.6 42.1 406 20-448 95-528 (644)
18 3l6x_A Catenin delta-1; cateni 100.0 3.4E-37 1.2E-41 292.9 29.6 366 22-395 47-479 (584)
19 2z6g_A B-catenin; FULL-length, 100.0 1.4E-35 4.7E-40 298.9 42.7 408 20-450 231-666 (780)
20 3nmz_A APC variant protein; pr 100.0 1.5E-37 5E-42 289.4 23.7 343 5-351 51-452 (458)
21 3l6x_A Catenin delta-1; cateni 100.0 6.6E-36 2.3E-40 284.1 31.4 368 64-449 46-478 (584)
22 1jdh_A Beta-catenin; beta-cate 100.0 2.6E-35 8.8E-40 287.4 31.1 405 22-448 58-490 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 2.5E-34 8.4E-39 285.8 32.3 405 22-448 55-487 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 1.2E-33 4.1E-38 284.8 32.6 404 22-447 191-622 (780)
25 3nmw_A APC variant protein; AR 100.0 4.8E-31 1.7E-35 238.7 21.2 269 81-352 46-337 (354)
26 3nmw_A APC variant protein; AR 100.0 3.7E-31 1.3E-35 239.5 19.2 273 37-312 46-339 (354)
27 4hxt_A De novo protein OR329; 100.0 1.6E-27 5.4E-32 209.1 23.0 240 66-308 2-242 (252)
28 4hxt_A De novo protein OR329; 100.0 2.9E-27 9.8E-32 207.4 23.0 242 23-267 2-244 (252)
29 4db8_A Armadillo-repeat protei 100.0 1.2E-27 4.2E-32 209.6 18.4 239 66-307 12-251 (252)
30 4db8_A Armadillo-repeat protei 100.0 2.4E-27 8.1E-32 207.8 19.7 238 24-264 13-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 1.3E-25 4.3E-30 197.8 21.6 236 207-451 54-291 (296)
32 3opb_A SWI5-dependent HO expre 99.9 1.2E-24 4E-29 209.7 23.9 389 23-430 296-759 (778)
33 3opb_A SWI5-dependent HO expre 99.9 1.2E-23 4.1E-28 202.7 28.1 399 22-447 254-728 (778)
34 4db6_A Armadillo repeat protei 99.9 1.9E-23 6.5E-28 177.5 23.6 199 191-391 10-208 (210)
35 4db6_A Armadillo repeat protei 99.9 4.7E-23 1.6E-27 175.0 19.6 199 64-264 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 6.6E-23 2.3E-27 180.5 16.9 226 165-392 53-287 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 4.5E-21 1.6E-25 161.2 14.4 197 67-265 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.9 4.2E-21 1.4E-25 161.4 13.4 196 24-223 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 2.3E-18 7.9E-23 169.9 25.8 342 67-446 243-586 (588)
40 1b3u_A Protein (protein phosph 99.8 3.2E-18 1.1E-22 168.9 24.9 382 23-447 164-548 (588)
41 4fdd_A Transportin-1; heat rep 99.8 1.2E-18 4E-23 179.1 22.1 358 22-396 89-475 (852)
42 4fdd_A Transportin-1; heat rep 99.8 7.3E-18 2.5E-22 173.2 25.3 393 26-447 48-471 (852)
43 3grl_A General vesicular trans 99.8 1.8E-15 6E-20 142.5 36.0 420 19-452 56-555 (651)
44 2vgl_B AP-2 complex subunit be 99.8 9E-16 3.1E-20 150.4 33.6 341 24-396 50-423 (591)
45 3grl_A General vesicular trans 99.8 2.2E-16 7.6E-21 148.5 26.1 327 20-352 18-397 (651)
46 2vgl_B AP-2 complex subunit be 99.7 3.1E-16 1.1E-20 153.6 23.9 338 24-392 87-457 (591)
47 1oyz_A Hypothetical protein YI 99.7 1.2E-15 4.2E-20 135.3 23.0 261 60-388 17-278 (280)
48 2bpt_A Importin beta-1 subunit 99.7 1.1E-14 3.6E-19 150.3 28.3 401 25-447 371-811 (861)
49 1oyz_A Hypothetical protein YI 99.7 4.2E-15 1.4E-19 131.8 20.9 255 22-345 22-278 (280)
50 1w63_A Adapter-related protein 99.7 5.5E-15 1.9E-19 145.3 23.4 361 23-446 107-489 (618)
51 2bpt_A Importin beta-1 subunit 99.7 1.4E-14 4.8E-19 149.4 25.6 356 23-395 324-714 (861)
52 1qgr_A Protein (importin beta 99.6 2.6E-14 8.9E-19 147.7 25.5 276 24-307 173-479 (876)
53 1ibr_B P95, importin beta-1 su 99.6 5.6E-15 1.9E-19 141.1 18.4 390 25-448 3-438 (462)
54 1qgr_A Protein (importin beta 99.6 4.9E-14 1.7E-18 145.6 25.5 407 24-446 367-826 (876)
55 1ibr_B P95, importin beta-1 su 99.6 2.8E-15 9.6E-20 143.2 14.4 363 22-396 34-441 (462)
56 1u6g_C TIP120 protein, CAND1; 99.6 1.5E-13 5.3E-18 146.7 26.9 408 24-447 7-463 (1230)
57 1w63_A Adapter-related protein 99.6 9.2E-14 3.1E-18 136.6 22.6 327 24-393 143-491 (618)
58 1u6g_C TIP120 protein, CAND1; 99.5 4.9E-13 1.7E-17 142.8 20.9 396 25-445 88-546 (1230)
59 3ltm_A Alpha-REP4; protein eng 99.5 2.9E-12 9.8E-17 108.3 19.0 191 20-267 16-206 (211)
60 3ltj_A Alpharep-4; protein eng 99.5 2.2E-12 7.5E-17 108.1 17.6 186 21-263 12-197 (201)
61 3ltm_A Alpha-REP4; protein eng 99.5 4.1E-12 1.4E-16 107.3 18.7 187 65-308 18-204 (211)
62 2vgl_A Adaptor protein complex 99.5 7.5E-11 2.6E-15 115.5 29.0 291 24-348 75-397 (621)
63 3ltj_A Alpharep-4; protein eng 99.5 7.7E-12 2.6E-16 104.7 19.0 184 66-306 14-197 (201)
64 2vgl_A Adaptor protein complex 99.4 1.7E-10 5.7E-15 113.1 24.0 336 25-395 148-512 (621)
65 2db0_A 253AA long hypothetical 99.2 7.8E-09 2.7E-13 79.9 18.9 218 107-350 30-247 (253)
66 4gmo_A Putative uncharacterize 99.1 2.7E-09 9.1E-14 106.0 17.9 219 62-306 31-257 (684)
67 4ady_A RPN2, 26S proteasome re 99.1 1.4E-08 4.7E-13 100.9 22.5 308 24-390 393-717 (963)
68 2db0_A 253AA long hypothetical 99.1 7E-08 2.4E-12 74.7 20.2 219 149-395 30-249 (253)
69 3tjz_B Coatomer subunit gamma; 99.0 1.6E-08 5.6E-13 90.2 18.6 277 23-344 68-348 (355)
70 3b2a_A TON_1937, putative unch 99.0 7.8E-09 2.7E-13 83.6 14.3 225 192-444 32-258 (265)
71 4gmo_A Putative uncharacterize 99.0 2.3E-09 7.9E-14 106.4 13.4 196 193-393 35-259 (684)
72 1ho8_A Vacuolar ATP synthase s 99.0 7.4E-07 2.5E-11 81.3 27.8 321 108-445 76-474 (480)
73 3b2a_A TON_1937, putative unch 98.9 1.1E-07 3.8E-12 77.0 16.6 187 23-223 33-219 (265)
74 3tjz_B Coatomer subunit gamma; 98.8 1.8E-07 6.2E-12 83.5 17.8 318 21-387 24-348 (355)
75 2qk2_A LP04448P; mini spindles 98.8 3.7E-08 1.3E-12 84.7 12.9 186 154-350 18-206 (242)
76 2qk2_A LP04448P; mini spindles 98.8 3.4E-08 1.2E-12 85.0 11.7 186 112-307 18-205 (242)
77 4ady_A RPN2, 26S proteasome re 98.8 2.8E-06 9.6E-11 84.6 24.7 271 67-393 393-677 (963)
78 2qk1_A Protein STU2; STU2P, XM 98.7 3.2E-07 1.1E-11 78.7 15.1 194 113-307 20-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.7 1.8E-07 6E-12 80.3 11.4 191 156-349 21-220 (249)
80 1ho8_A Vacuolar ATP synthase s 98.6 5.7E-05 1.9E-09 69.1 25.6 324 65-393 76-477 (480)
81 1wa5_C Importin alpha RE-expor 98.6 3.2E-05 1.1E-09 80.4 27.0 389 22-448 34-526 (960)
82 1wa5_C Importin alpha RE-expor 98.5 7.2E-05 2.5E-09 77.8 29.1 344 26-393 88-526 (960)
83 1te4_A Conserved protein MTH18 98.5 1.6E-08 5.3E-13 77.8 1.2 120 234-389 11-130 (131)
84 1te4_A Conserved protein MTH18 98.5 3.2E-08 1.1E-12 76.0 2.9 121 65-220 11-131 (131)
85 2iw3_A Elongation factor 3A; a 98.5 2E-05 7E-10 79.5 22.7 307 19-349 10-324 (986)
86 2iw3_A Elongation factor 3A; a 98.4 2.3E-05 7.7E-10 79.2 19.7 296 114-446 19-323 (986)
87 3dad_A FH1/FH2 domain-containi 98.4 1.4E-05 4.6E-10 69.5 15.7 195 195-391 120-334 (339)
88 2x1g_F Cadmus; transport prote 98.3 8.5E-05 2.9E-09 77.4 24.0 329 38-394 204-617 (971)
89 3dad_A FH1/FH2 domain-containi 98.3 2.2E-05 7.4E-10 68.2 15.6 188 240-437 123-326 (339)
90 4hat_C Exportin-1; heat repeat 98.3 0.00023 7.9E-09 73.6 25.6 341 34-396 206-622 (1023)
91 3m1i_C Exportin-1; heat repeat 98.2 0.0024 8.2E-08 67.0 32.1 355 23-395 138-572 (1049)
92 2x1g_F Cadmus; transport prote 98.2 0.00062 2.1E-08 70.9 25.7 390 22-447 38-535 (971)
93 3m1i_C Exportin-1; heat repeat 98.1 0.0015 5.2E-08 68.5 26.7 348 29-395 200-621 (1049)
94 2x19_B Importin-13; nuclear tr 98.1 0.00028 9.4E-09 73.6 21.0 340 76-448 459-847 (963)
95 4hat_C Exportin-1; heat repeat 98.0 0.0019 6.6E-08 66.8 24.4 389 35-445 465-927 (1023)
96 2x19_B Importin-13; nuclear tr 97.9 0.0017 5.7E-08 67.7 23.6 331 33-394 459-848 (963)
97 3ibv_A Exportin-T; karyopherin 97.8 0.0011 3.9E-08 68.3 18.6 306 78-396 205-570 (980)
98 4ffb_C Protein STU2; tubulin f 97.7 0.0013 4.4E-08 57.4 14.8 191 23-222 10-212 (278)
99 3ibv_A Exportin-T; karyopherin 97.5 0.0055 1.9E-07 63.3 19.7 345 82-447 458-870 (980)
100 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00031 1.1E-08 64.9 8.9 217 24-263 175-403 (800)
101 4ffb_C Protein STU2; tubulin f 97.5 0.0037 1.3E-07 54.5 15.8 188 240-447 14-212 (278)
102 2of3_A ZYG-9; multifunctional 97.4 0.0021 7.1E-08 54.7 12.4 181 198-395 51-239 (266)
103 1upk_A MO25 protein; transfera 97.4 0.014 4.7E-07 50.8 17.2 208 229-450 72-286 (341)
104 2fv2_A RCD1 required for cell 97.4 0.011 3.9E-07 49.0 15.5 187 206-395 14-227 (268)
105 3gjx_A Exportin-1; transport, 97.3 0.14 4.8E-06 53.0 26.9 297 34-352 218-598 (1073)
106 3oc3_A Helicase MOT1, MOT1; re 97.3 0.0015 5.1E-08 60.6 10.9 244 67-345 175-432 (800)
107 1upk_A MO25 protein; transfera 97.3 0.016 5.6E-07 50.3 16.7 200 105-307 74-283 (341)
108 3gjx_A Exportin-1; transport, 97.3 0.068 2.3E-06 55.4 24.4 308 71-396 211-599 (1073)
109 2of3_A ZYG-9; multifunctional 97.3 0.0059 2E-07 51.9 13.7 178 112-307 49-236 (266)
110 3c2g_A SYS-1 protein; beta-cat 97.2 0.05 1.7E-06 47.2 17.8 295 133-447 266-618 (619)
111 2fv2_A RCD1 required for cell 96.9 0.051 1.8E-06 45.1 15.2 189 249-445 15-222 (268)
112 2f31_A Diaphanous protein homo 96.8 0.025 8.6E-07 47.5 12.7 166 267-441 34-222 (233)
113 1lrv_A LRV, leucine-rich repea 96.7 0.00032 1.1E-08 59.2 0.9 185 73-387 57-241 (244)
114 1lrv_A LRV, leucine-rich repea 96.7 0.00055 1.9E-08 57.8 2.3 64 30-131 57-120 (244)
115 3u0r_A Apoptosis inhibitor 5; 96.6 0.19 6.4E-06 46.1 17.9 249 120-395 39-301 (507)
116 3l9t_A Putative uncharacterize 96.3 0.26 8.8E-06 40.6 15.3 144 68-233 73-218 (240)
117 3eg5_B Protein diaphanous homo 96.2 0.058 2E-06 49.0 12.3 163 266-437 99-284 (383)
118 3l9t_A Putative uncharacterize 96.2 0.099 3.4E-06 43.1 12.3 144 154-318 73-218 (240)
119 3a6p_A Exportin-5; exportin-5, 96.0 2.1 7.2E-05 45.5 26.2 300 25-350 13-381 (1204)
120 2f31_A Diaphanous protein homo 96.0 0.3 1E-05 40.9 14.8 138 44-183 22-182 (233)
121 3c2g_A SYS-1 protein; beta-cat 95.9 0.7 2.4E-05 40.3 16.6 161 211-374 261-449 (619)
122 2bnx_A Diaphanous protein homo 95.6 0.72 2.4E-05 41.9 16.8 162 268-438 39-223 (386)
123 3u0r_A Apoptosis inhibitor 5; 95.4 1.6 5.4E-05 40.1 19.6 178 20-221 26-205 (507)
124 3eg5_B Protein diaphanous homo 95.4 0.86 2.9E-05 41.3 16.4 157 26-184 69-249 (383)
125 3a6p_A Exportin-5; exportin-5, 95.3 0.82 2.8E-05 48.6 18.6 283 81-393 27-381 (1204)
126 3ebb_A Phospholipase A2-activa 94.9 1.2 4.1E-05 38.8 15.4 173 68-246 105-287 (304)
127 1lsh_A Lipovitellin (LV-1N, LV 94.9 2.1 7.2E-05 44.7 19.7 172 153-353 393-580 (1056)
128 2bnx_A Diaphanous protein homo 94.3 2.7 9.4E-05 38.0 16.8 157 27-185 8-188 (386)
129 3ebb_A Phospholipase A2-activa 94.2 0.52 1.8E-05 41.1 11.4 109 70-182 151-264 (304)
130 1vdy_A Hypothetical protein (R 93.9 0.44 1.5E-05 35.8 8.8 100 338-454 29-137 (140)
131 3ldz_A STAM-1, signal transduc 93.8 0.18 6.1E-06 38.2 6.7 75 321-395 43-117 (140)
132 1lsh_A Lipovitellin (LV-1N, LV 93.7 4.6 0.00016 42.1 19.1 166 111-309 393-578 (1056)
133 3g2s_A C-terminal fragment of 93.6 0.19 6.6E-06 38.4 6.6 75 321-395 49-129 (149)
134 1mhq_A ADP-ribosylation factor 92.8 0.4 1.4E-05 36.7 7.3 74 321-394 39-118 (148)
135 1x5b_A Signal transducing adap 92.8 0.26 8.8E-06 38.5 6.3 73 321-393 53-126 (163)
136 3ldz_A STAM-1, signal transduc 92.6 0.67 2.3E-05 35.0 8.3 80 364-455 43-122 (140)
137 3qml_C Protein SLS1, nucleotid 92.3 1.1 3.7E-05 38.4 9.9 134 251-392 44-189 (315)
138 1x5b_A Signal transducing adap 91.6 0.74 2.5E-05 35.8 7.7 80 364-455 53-133 (163)
139 1juq_A ADP-ribosylation factor 91.5 0.45 1.5E-05 37.4 6.3 74 321-394 51-130 (171)
140 3gs3_A Symplekin, LD45768P; he 90.5 7.2 0.00025 32.8 21.3 100 25-136 14-117 (257)
141 3qml_C Protein SLS1, nucleotid 89.2 6.4 0.00022 33.8 11.7 151 193-349 22-189 (315)
142 3o2t_A Symplekin; heat repeat, 88.6 13 0.00046 33.3 19.5 88 38-136 40-127 (386)
143 1mhq_A ADP-ribosylation factor 87.7 0.93 3.2E-05 34.6 5.3 74 23-96 38-116 (148)
144 3o2t_A Symplekin; heat repeat, 86.7 6.6 0.00023 35.3 11.0 119 320-446 63-182 (386)
145 3zyq_A Hepatocyte growth facto 86.3 1.4 4.7E-05 36.5 6.0 75 321-395 46-121 (226)
146 3gs3_A Symplekin, LD45768P; he 86.3 11 0.00038 31.7 11.6 138 293-446 30-172 (257)
147 1juq_A ADP-ribosylation factor 86.1 3.8 0.00013 32.1 8.2 70 364-445 51-126 (171)
148 3g2s_A C-terminal fragment of 86.1 3.5 0.00012 31.4 7.7 71 364-446 49-125 (149)
149 1dvp_A HRS, hepatocyte growth 85.6 3.1 0.0001 34.3 7.8 78 365-454 44-122 (220)
150 1elk_A Target of MYB1; superhe 84.4 2.6 9E-05 32.5 6.5 73 321-393 54-131 (157)
151 3zyq_A Hepatocyte growth facto 83.5 3.1 0.00011 34.4 7.0 72 364-447 46-118 (226)
152 3fga_B Serine/threonine-protei 83.4 25 0.00087 31.7 15.2 230 104-350 124-367 (403)
153 1dvp_A HRS, hepatocyte growth 80.1 1.4 4.9E-05 36.3 3.7 74 23-96 42-115 (220)
154 2npp_B PP2A, B subunit, serine 78.7 40 0.0014 30.9 17.0 241 61-315 157-407 (449)
155 1elk_A Target of MYB1; superhe 77.3 5.7 0.0002 30.6 6.1 72 364-447 54-130 (157)
156 1vdy_A Hypothetical protein (R 77.2 5.5 0.00019 29.8 5.7 74 321-394 50-132 (140)
157 1vsy_5 Proteasome activator BL 73.9 36 0.0012 35.2 12.6 188 152-349 134-365 (997)
158 3rru_A TOM1L1 protein; structu 71.4 6.3 0.00021 30.1 4.9 75 321-395 54-133 (152)
159 2npp_B PP2A, B subunit, serine 66.9 79 0.0027 29.1 17.8 232 102-350 155-400 (449)
160 2jak_A Serine/threonine-protei 66.4 74 0.0025 28.6 11.4 191 104-302 169-362 (392)
161 2b6c_A Hypothetical protein EF 64.8 49 0.0017 26.9 9.5 139 157-318 60-199 (220)
162 1vsy_5 Proteasome activator BL 64.2 58 0.002 33.6 11.7 191 187-393 127-366 (997)
163 3fga_B Serine/threonine-protei 62.0 91 0.0031 28.1 16.1 232 192-449 128-368 (403)
164 3s4w_B Protein FACD2, fanconi 61.9 83 0.0028 33.4 12.3 171 122-307 323-507 (1323)
165 2jak_A Serine/threonine-protei 59.7 60 0.0021 29.2 9.6 184 192-387 173-362 (392)
166 3rru_A TOM1L1 protein; structu 59.4 33 0.0011 26.1 6.9 80 364-455 54-138 (152)
167 3gae_A Protein DOA1; UFD3, CDC 59.2 45 0.0015 27.9 8.4 133 84-223 71-218 (253)
168 3gae_A Protein DOA1; UFD3, CDC 55.6 17 0.00058 30.5 5.2 106 33-144 100-223 (253)
169 3pst_A Protein DOA1; protein d 53.5 92 0.0031 28.3 9.8 131 84-225 243-392 (425)
170 3pst_A Protein DOA1; protein d 49.9 27 0.00093 31.7 5.8 108 32-144 271-395 (425)
171 2xpp_A IWS1, ECU08_0440; trans 47.1 64 0.0022 24.2 6.5 75 354-445 52-134 (145)
172 3l3f_X Protein DOA1, DOA1/UFD3 44.8 91 0.0031 27.7 8.2 130 84-224 180-328 (362)
173 2b6c_A Hypothetical protein EF 42.8 1.3E+02 0.0046 24.3 9.0 135 238-397 58-193 (220)
174 3l3f_X Protein DOA1, DOA1/UFD3 42.5 30 0.001 30.7 4.8 106 32-143 208-331 (362)
175 3ut4_A CTHE_2751, putative unc 42.1 94 0.0032 22.9 6.6 95 321-448 32-131 (134)
176 3jxy_A Alkylpurine DNA glycosy 42.1 1.3E+02 0.0046 24.5 8.6 142 156-320 65-208 (232)
177 3s4w_B Protein FACD2, fanconi 40.5 3.7E+02 0.013 28.7 17.6 101 284-392 407-507 (1323)
178 1w9c_A CRM1 protein, exportin 37.1 2.1E+02 0.0071 24.9 15.2 178 251-446 45-244 (321)
179 1vsy_4 Proteasome activator BL 35.1 2.3E+02 0.0078 28.4 10.3 111 110-221 340-454 (799)
180 1wjt_A Transcription elongatio 34.5 74 0.0025 22.2 4.9 35 411-445 47-82 (103)
181 4atg_A TAF6; transcription, TF 25.2 2.6E+02 0.0088 22.2 9.8 110 152-262 41-160 (196)
182 4flb_A Regulation of nuclear P 22.9 1.3E+02 0.0043 21.9 4.8 61 153-223 10-70 (132)
183 1sz9_A PCF11 protein; RNA poly 22.4 2.4E+02 0.0083 20.9 7.0 87 296-388 24-110 (144)
184 1vsy_4 Proteasome activator BL 22.3 6E+02 0.021 25.5 12.6 267 167-451 249-572 (799)
185 1zoq_C CREB-binding protein, i 21.1 1.3E+02 0.0043 17.1 3.2 36 67-106 2-37 (47)
186 2xpp_A IWS1, ECU08_0440; trans 20.7 2.7E+02 0.0093 20.8 9.9 76 98-178 50-133 (145)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=7e-56 Score=427.19 Aligned_cols=420 Identities=46% Similarity=0.764 Sum_probs=389.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.++.+++.++|+|++.|+.|+..++++++.++.++++.+++.|++|.|+++|++++.+++|..|+|+|+|++.++++.+.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 48999999999999999999999999999887888999999999999999998776689999999999999999999999
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc----cHHHHHHHHHHHHHh
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA----KLSMLRIATWTLSKL 179 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~l~~l 179 (458)
.+++.|++|.|+.+|.++++.+++.|+|+|+||+.+.+..++.+.+.|++++++.++.... ...+++.++|++.++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995332 345788999999999
Q ss_pred hcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950 180 CKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258 (458)
Q Consensus 180 ~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 258 (458)
+.+. +........+++|.|+.++.+++++++..++++|++++....+..+.+.+.|+++.|+.++.+++..++..++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9987 455556668999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHH
Q 043950 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK 338 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~ 338 (458)
+++++..++.....+++.|+++.|+.+|.++ +..+++.|+|+|+|++.+++.+...+.+.|+++.|+.++.+++.+++.
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 9999999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcc
Q 043950 339 EAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE 418 (458)
Q Consensus 339 ~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (458)
+|+|+|+|++..++.+++.++.+.|+++.|+++++++|++++..++++|.++++..+.. +..+.+...|+++|
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~g 449 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEECG 449 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc-------cchHHHHHHHHHcC
Confidence 99999999999889999999999999999999999999999999999999999987764 34677899999999
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950 419 GFKKIEGLKSHDNNGIREKAVKILETYWCGRVV 451 (458)
Q Consensus 419 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 451 (458)
|+++|+.|++|+|++|+++|..+|++||..||+
T Consensus 450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 482 (510)
T 3ul1_B 450 GLDKIEALQRHENESVYKASLNLIEKYFSVEEE 482 (510)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 999999999999999999999999999987654
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.1e-54 Score=421.36 Aligned_cols=421 Identities=46% Similarity=0.752 Sum_probs=389.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
..++.+++.++++|++.++.|+..++++++.+..++...+++.|++|.|+++|+..+++.++..|+|+|+|++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35899999999999999999999999999888788899999999999999999876668999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc----cHHHHHHHHHHHHH
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA----KLSMLRIATWTLSK 178 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~l~~ 178 (458)
..+++.|++|.|+.++.++++.+++.|+|+|+||+.+++.+++.+.+.|++++++.++.... ...+++.++|++.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995332 34578899999999
Q ss_pred hhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHH
Q 043950 179 LCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257 (458)
Q Consensus 179 l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 257 (458)
++.+. +........+++|.|+.++.+++++++..++|+|.+++....+..+.+.+.|+++.|+.++.+++..++..+++
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 99987 55556667899999999999999999999999999999988888888999999999999999999999999999
Q ss_pred HHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhH
Q 043950 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIK 337 (458)
Q Consensus 258 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~ 337 (458)
++++++.+++.....+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.+++.+...+.+.|+++.|+.++.+++.+++
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhc
Q 043950 338 KEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEED 417 (458)
Q Consensus 338 ~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (458)
.+|+|+|+|++..++.++...+.+.|+++.|+++|.++|++++..++++|.++++..+.. +..+.+...++++
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~ 467 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEEC 467 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc-------cChHHHHHHHHHC
Confidence 999999999999888999999999999999999999999999999999999999987764 2467788999999
Q ss_pred chHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950 418 EGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV 451 (458)
Q Consensus 418 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 451 (458)
||+++|..|++|+|++|+++|..+|++||..+|+
T Consensus 468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 501 (529)
T 3tpo_A 468 GGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 501 (529)
T ss_dssp TCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999999999999999999987654
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.7e-49 Score=383.60 Aligned_cols=429 Identities=77% Similarity=1.183 Sum_probs=391.2
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
...+|.+++.|.++++.++..|+++|+++++....+....+++.|++|.|+++|.+++++.++..|+++|++++.++++.
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35699999999999999999999999999887645778899999999999999998765899999999999999988999
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
+..+++.|+++.|+.++.++++.+++.|+|+|++++.+.+..+..+.+.|+++.++..+..+.++.++..++|+|.+++.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998888889999999999999999777889999999999999999
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261 (458)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~ 261 (458)
..+........+++|.++.++.+.++.++..++++|++++...+...+.+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 87777777789999999999999999999999999999998888777888999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHH
Q 043950 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAA 341 (458)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~ 341 (458)
++.+++...+.+++.|+++.|+.+|.++.++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++.+++..|+
T Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 392 (528)
T 4b8j_A 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 392 (528)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 99988888889999999999999998765789999999999999998889999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHH
Q 043950 342 LAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421 (458)
Q Consensus 342 ~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (458)
++|++++..++++...++.+.|+++.|+.++..++++++..++++|.+++...+.....+. ...+.+...+.+.|+++
T Consensus 393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~ 470 (528)
T 4b8j_A 393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE 470 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHH
Confidence 9999999987889999999999999999999999999999999999999988766321100 12456899999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhcCCCCCC
Q 043950 422 KIEGLKSHDNNGIREKAVKILETYWCGRVVG 452 (458)
Q Consensus 422 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 452 (458)
.|..+++|+++++++.|.+++++||..++.+
T Consensus 471 ~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~ 501 (528)
T 4b8j_A 471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDD 501 (528)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCcccc
Confidence 9999999999999999999999999987654
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.4e-47 Score=369.54 Aligned_cols=427 Identities=54% Similarity=0.810 Sum_probs=387.1
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
.+.++.+++.|+++++.++..|++.|+++++....+....+++.|++|.|+++|.+++++.++..|+++|++++.++++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 36799999999999999999999999999887545667888999999999999999733899999999999999988889
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
+..++..|+++.|+.++.++++.+++.|+|+|++++.+.+..+..+...|+++.++.++ .+.++.++..++|+|.+++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999998888888888999999999999 55888999999999999998
Q ss_pred CC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 182 GK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 182 ~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
.. +........+++|.++.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 86 66666777999999999999999999999999999999887777788888999999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHH
Q 043950 261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEA 340 (458)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a 340 (458)
+++.+++.....+++.|+++.++.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99998888888888999999999999998 99999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHhhcCCCH--HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcc
Q 043950 341 ALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE 418 (458)
Q Consensus 341 ~~~L~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (458)
+++|++++..+++ +....+.+.|+++.|+.++.++++.++..++++|.+++...+..... +.+..+.+...+.+.|
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~--~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA--RGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc--ccccccHHHHHHHHcC
Confidence 9999999987666 77888899999999999999999999999999999999877653210 0012356789999999
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCCC
Q 043950 419 GFKKIEGLKSHDNNGIREKAVKILETYWCGRVVG 452 (458)
Q Consensus 419 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 452 (458)
+++.|..|++++++++++.|..+|++||..++.+
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 9999999999999999999999999999887663
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1e-45 Score=353.64 Aligned_cols=426 Identities=56% Similarity=0.875 Sum_probs=381.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
.++.+++.++++++.++..|+..|+++++....+....+++. |+++.|++++++++++.++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 488999999999999999999999998774335556777887 9999999999998338999999999999999888888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
..+++.|+++.|+.++.++++.+++.|+++|++++.+.+..+..+.+.|+++.++..+..+.++.++..++|++.+++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88889999999999999999999999999999999988888888888999999999996567899999999999999987
Q ss_pred C-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950 183 K-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261 (458)
Q Consensus 183 ~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~ 261 (458)
. +........+++|.++.++.++++.++..+++++.+++...+.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 555566669999999999999999999999999999998777777778889999999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHH
Q 043950 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAA 341 (458)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~ 341 (458)
++...+...+.+++.|+++.++.++.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888888888899999999999998 999999999999999998888899999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHH
Q 043950 342 LAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421 (458)
Q Consensus 342 ~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (458)
++|++++..++++..+.+.+.|+++.|+.+++.++++++..++++|.+++...+.....+. ...+++...+.+.|+++
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~ 417 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLD 417 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC--SCCCHHHHHHHHHHCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc--cchhHHHHHHHHcCcHH
Confidence 9999999876778888888999999999999999999999999999999987665321000 12346889999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhcCCCCCC
Q 043950 422 KIEGLKSHDNNGIREKAVKILETYWCGRVVG 452 (458)
Q Consensus 422 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 452 (458)
.|..+++++++++++.|..++++||.+++++
T Consensus 418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 418 KIEFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 9999999999999999999999999888765
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=7.1e-44 Score=343.50 Aligned_cols=389 Identities=26% Similarity=0.408 Sum_probs=340.6
Q ss_pred ccccCCCCCCCCChhhHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHH
Q 043950 4 SQRFLPSAPRPSLNLQTKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ 82 (458)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 82 (458)
+|+++..+..||-+.....|.+|.|+++|++ +++.+|..|+|+|+++++++ ++....+++.|++|.|+++|.+++ ++
T Consensus 81 ~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~ 158 (510)
T 3ul1_B 81 ARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AH 158 (510)
T ss_dssp HHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HH
T ss_pred HHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HH
Confidence 4555555555665667788999999999985 56899999999999999876 778889999999999999999998 89
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHH
Q 043950 83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAADSPGCRNLVLREEALIPLL 157 (458)
Q Consensus 83 i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~ 157 (458)
+++.|+|+|+|++.++++.+..+.+.|+++.|+.++.+++ ..+.+.++|++++++.+...........++++.|+
T Consensus 159 v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 238 (510)
T 3ul1_B 159 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 238 (510)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHH
Confidence 9999999999999988999999999999999999998643 46788999999999987755555555567889999
Q ss_pred HHhcccccHHHHHHHHHHHHHhhcCCCCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCc
Q 043950 158 AQLNEHAKLSMLRIATWTLSKLCKGKPQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGV 236 (458)
Q Consensus 158 ~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 236 (458)
.++ .+.+++++..++|+|++++...+... .....++++.++.++.+.+..++..+++++++++..++.....+++.|+
T Consensus 239 ~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~ 317 (510)
T 3ul1_B 239 RLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317 (510)
T ss_dssp HHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred HHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccc
Confidence 988 78889999999999999998753322 2234789999999999999999999999999999888888888999999
Q ss_pred HHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHH
Q 043950 237 CRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQA 315 (458)
Q Consensus 237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~ 315 (458)
++.|+.++.+++..++..|+|+|+|++.+++.....+++.|+++.++.++.++ +.+++++|+|+|+|++. ++.+++.+
T Consensus 318 l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~ 396 (510)
T 3ul1_B 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVY 396 (510)
T ss_dssp GGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999997 67889999
Q ss_pred HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC-----CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR-----GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390 (458)
Q Consensus 316 l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l 390 (458)
+++.|+++.|+++|...|++++..++++|.|++.. ........+.+.|+++.|..+..++++++.+.|..+|.++
T Consensus 397 L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999753 2234455667899999999999999999999999999999
Q ss_pred HHhchh
Q 043950 391 LKVGEA 396 (458)
Q Consensus 391 ~~~~~~ 396 (458)
|..+++
T Consensus 477 f~~~~~ 482 (510)
T 3ul1_B 477 FSVEEE 482 (510)
T ss_dssp CC----
T ss_pred CCCccc
Confidence 975543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.9e-43 Score=340.45 Aligned_cols=389 Identities=26% Similarity=0.410 Sum_probs=340.1
Q ss_pred ccccCCCCCCCCChhhHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHH
Q 043950 4 SQRFLPSAPRPSLNLQTKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ 82 (458)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 82 (458)
+|+++.....|+-+.....|.+|.|+++|+. +++.++..|+++|.++++++ +.....+++.|++|.|+.++.+++ ++
T Consensus 100 ~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~ 177 (529)
T 3tpo_A 100 ARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AH 177 (529)
T ss_dssp HHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HH
T ss_pred HHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HH
Confidence 3455555555665567788999999999974 56999999999999999875 677888999999999999999999 89
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHH
Q 043950 83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAADSPGCRNLVLREEALIPLL 157 (458)
Q Consensus 83 i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~ 157 (458)
+++.|+|+|+|++.++++.+..+++.|+++.|+.++..++ ..+.+.++|++++++.+...........++++.|+
T Consensus 178 v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 257 (529)
T 3tpo_A 178 ISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 257 (529)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHH
Confidence 9999999999999989999999999999999999998643 46788999999999987655555555567889999
Q ss_pred HHhcccccHHHHHHHHHHHHHhhcCCCCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCc
Q 043950 158 AQLNEHAKLSMLRIATWTLSKLCKGKPQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGV 236 (458)
Q Consensus 158 ~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 236 (458)
.++ .+++++++..++|+|.+++...+... .....+++|.++.++.+++..++..+++++++++..++.....+++.|+
T Consensus 258 ~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~ 336 (529)
T 3tpo_A 258 RLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 336 (529)
T ss_dssp HHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred HHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhccc
Confidence 988 78889999999999999998753322 2334789999999999999999999999999999888888888999999
Q ss_pred HHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHH
Q 043950 237 CRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQA 315 (458)
Q Consensus 237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~ 315 (458)
++.|+.++.++++.++..|+|+|+|++.+++.....+++.|+++.++.++.++ +.+++.+|+|+|+|++. ++++++..
T Consensus 337 l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~ 415 (529)
T 3tpo_A 337 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVY 415 (529)
T ss_dssp GGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999987 67889999
Q ss_pred HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC-----CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR-----GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390 (458)
Q Consensus 316 l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l 390 (458)
+++.|+++.|+++|.+.|++++..++++|.|+... ........+.+.|+++.|..+..+++.+|.+.|..+|.++
T Consensus 416 l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 416 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999742 2234455667899999999999999999999999999999
Q ss_pred HHhchh
Q 043950 391 LKVGEA 396 (458)
Q Consensus 391 ~~~~~~ 396 (458)
|..+++
T Consensus 496 f~~~~~ 501 (529)
T 3tpo_A 496 FSVEEE 501 (529)
T ss_dssp C-----
T ss_pred CCCccc
Confidence 875443
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.7e-38 Score=309.16 Aligned_cols=375 Identities=25% Similarity=0.345 Sum_probs=331.5
Q ss_pred hhHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950 18 LQTKLEILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 96 (458)
Q Consensus 18 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 96 (458)
.....|.+|.|+++|.++ ++.++..|+++|.+++... .+....+++.|+++.|+++|.+++ ++++..|+++|++++.
T Consensus 125 ~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~ 202 (530)
T 1wa5_B 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAG 202 (530)
T ss_dssp HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence 445678999999999987 8999999999999998764 566778889999999999999988 8999999999999999
Q ss_pred CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHH
Q 043950 97 GTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTL 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l 176 (458)
++++.+..+...|+++.|+.++.+.++.++..++|+|++++.+...........++++.++.++ .+.++.++..++|+|
T Consensus 203 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L 281 (530)
T 1wa5_B 203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAI 281 (530)
T ss_dssp TCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHH
T ss_pred CCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999977622233455678999999999 677899999999999
Q ss_pred HHhhcCCCCCCh-hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhH
Q 043950 177 SKLCKGKPQPPF-DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA 255 (458)
Q Consensus 177 ~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 255 (458)
.+++...+.... ....++++.++.++.+.++.++..++++|++++...+...+.+.+.|+++.|+.+|.++++.++..|
T Consensus 282 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A 361 (530)
T 1wa5_B 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361 (530)
T ss_dssp HHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHH
Confidence 999986432222 2235899999999999999999999999999998888777888899999999999999999999999
Q ss_pred HHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCH--HHHHHHHHcCChHHHHHHhccC
Q 043950 256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNR--EQIQAVIDAGLIVPLVNVLQDA 332 (458)
Q Consensus 256 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~--~~~~~l~~~~~~~~L~~ll~~~ 332 (458)
+++|++++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++. +.+ +....+++.|+++.|+.++.+.
T Consensus 362 ~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 440 (530)
T 1wa5_B 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA 440 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC
Confidence 9999999998888888888999999999999988 99999999999999997 345 7888899999999999999999
Q ss_pred ChhhHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 333 EFDIKKEAALAIANATVRGTH----------EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 333 ~~~~~~~a~~~L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
+++++..++++|.+++..++. ..+..+.+.|+++.|..++.+++++++..+.++|.+++...+.
T Consensus 441 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 441 DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 999999999999999875332 2456788899999999999999999999999999999976543
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-39 Score=319.19 Aligned_cols=367 Identities=15% Similarity=0.117 Sum_probs=317.6
Q ss_pred ccHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCccHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 23 EILPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPRIEDVI-QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 23 ~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
..++.++++|.++ |++++..|+++|..++.. .+....++ +.|++|.|++++++++ +.++..|+++|+|++.+.+
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence 4477888999988 899999999999999655 45555555 5799999999999988 8999999999999998542
Q ss_pred -----------------------------hhH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHH
Q 043950 100 -----------------------------MNT---NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147 (458)
Q Consensus 100 -----------------------------~~~---~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 147 (458)
..+ +.+++.|++|.|+.++.++++.+++.|+|+|+|++.+ +.++..+
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~V 532 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKV 532 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 112 6788999999999999999999999999999999965 4589999
Q ss_pred hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC-CCh--hhhhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccC
Q 043950 148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ-PPF--DQVRPALPALAQLIHLDDE-EVLSDACWTLSYLSYG 223 (458)
Q Consensus 148 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~--~~~~~~l~~l~~ll~~~~~-~~~~~~~~~l~~l~~~ 223 (458)
.+.|++++|+.++ .++++..++.|+|+|.+++..... ..+ ....+++|.|+.++.++.. ..+..++++|.|++..
T Consensus 533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 9999999999999 667788999999999999875321 111 1235789999999986533 4456899999999988
Q ss_pred ChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHh-cCChHHHHHHhccCChhhHHHHHHHHH
Q 043950 224 TNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKKSIKKVACWTI 302 (458)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~v~~~a~~~l 302 (458)
+++..+.+++.|+++.|+.++.++++.++..|+++++|++.+.+ ....+.+ .|.++.|+.++.++ +..+++.|+|+|
T Consensus 612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~AL 689 (810)
T 3now_A 612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGAL 689 (810)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 88788889999999999999999999999999999999998554 4455554 78999999999998 999999999999
Q ss_pred HHhhcCCHHHHHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC---CHH
Q 043950 303 SNITAGNREQIQAVID-AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV---DPK 378 (458)
Q Consensus 303 ~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~ 378 (458)
+|++.+++...+.+++ .|+++.|++++.+++.+++..|+|++.|++.. +.+....+.+.|+++.|.++++.+ +++
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~ 768 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK 768 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence 9999988889999998 89999999999999999999999999999884 578899999999999999999755 789
Q ss_pred HHHHHHHHHHHHHHhchhh
Q 043950 379 IVTVCLEGLENILKVGEAE 397 (458)
Q Consensus 379 v~~~~~~~l~~l~~~~~~~ 397 (458)
+++.++.+|.++.+++.-.
T Consensus 769 i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 769 AREVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhCCCcc
Confidence 9999999999999876654
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=9e-39 Score=311.17 Aligned_cols=378 Identities=25% Similarity=0.338 Sum_probs=334.3
Q ss_pred CCChhhHhhccHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 043950 14 PSLNLQTKLEILPAMVAGVWSDD-NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALT 92 (458)
Q Consensus 14 ~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~ 92 (458)
++.......|.+|.|+++|.+++ +.++..|+++|.+++.+. .+....+++.|+++.|+.++.+++ ++++..|+++|+
T Consensus 108 ~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~ 185 (528)
T 4b8j_A 108 PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALG 185 (528)
T ss_dssp CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 44445566799999999999887 999999999999998865 677888899999999999999988 899999999999
Q ss_pred HHcCCChhhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHH
Q 043950 93 NIASGTSMNTNVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRI 171 (458)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 171 (458)
+++.+++..+..+...|+++.|+.++ .+.++.++..++|+|++++...+... .....++++.++.++ .+.++.++..
T Consensus 186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL-~~~~~~v~~~ 263 (528)
T 4b8j_A 186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLI-HSNDEEVLTD 263 (528)
T ss_dssp HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHT-TCCCHHHHHH
T ss_pred HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHH-CCCCHHHHHH
Confidence 99998888999999999999999999 56889999999999999998765433 334578999999999 7788999999
Q ss_pred HHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-Cc
Q 043950 172 ATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SP 249 (458)
Q Consensus 172 a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~ 249 (458)
++|+|.+++...+.. ......++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++
T Consensus 264 a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 343 (528)
T 4b8j_A 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK 343 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH
Confidence 999999999765322 2223368999999999999999999999999999988888888899999999999999998 89
Q ss_pred cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHH
Q 043950 250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNV 328 (458)
Q Consensus 250 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~l 328 (458)
.++..|+++|+|++..++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++...++++.|+++.|+.+
T Consensus 344 ~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l 422 (528)
T 4b8j_A 344 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 422 (528)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999998888888899999999999999998 999999999999999984 78899999999999999999
Q ss_pred hccCChhhHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 329 LQDAEFDIKKEAALAIANATVRGTH----------EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 329 l~~~~~~~~~~a~~~L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
+...+++++..++++|.+++..+.. .+...+.+.|+++.|..+..+++++++..+.+++.+++..++.
T Consensus 423 L~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~ 500 (528)
T 4b8j_A 423 LICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED 500 (528)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999999999875422 3577788899999999999999999999999999999876544
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=5e-38 Score=306.58 Aligned_cols=404 Identities=18% Similarity=0.184 Sum_probs=343.1
Q ss_pred hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950 19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT 98 (458)
Q Consensus 19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~ 98 (458)
....|.+|.++++++++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ ++++..++.+|.+++.++
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCC
Confidence 344589999999999999999999999999998875 456777888999999999999988 899999999999999988
Q ss_pred hhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950 99 SMNTNVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS 177 (458)
Q Consensus 99 ~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~ 177 (458)
++.+..+.+.|+++.|+.++.++ ....+..+..+|.+++.. +..+..+.+.|+++.++..+ .+.++.++..++|++.
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~ 252 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLR 252 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHH
Confidence 99999999999999999999864 456777889999999864 55678888899999999999 5668899999999999
Q ss_pred HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhH
Q 043950 178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPA 255 (458)
Q Consensus 178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a 255 (458)
+++...+.. ....+++|.++.++.+++++++..+++++++++..+++....+.+.|+++.|++++.+ +++.++..|
T Consensus 253 ~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a 330 (529)
T 1jdh_A 253 NLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330 (529)
T ss_dssp HHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHH
Confidence 999876332 2346899999999999999999999999999998877778889999999999999976 346899999
Q ss_pred HHHHhHhhcCChh---hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC
Q 043950 256 LWTVGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA 332 (458)
Q Consensus 256 ~~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~ 332 (458)
+++|++++..++. ....+.+.|+++.++.+|.++.++.++..++|+++|++.+. .....+.+.|+++.|++++.++
T Consensus 331 ~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll~~~ 409 (529)
T 1jdh_A 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRA 409 (529)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHHHHH
Confidence 9999999886543 35677789999999999998834699999999999999865 4457888999999999999988
Q ss_pred ChhhHHHHHHHHHH----------------------hhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950 333 EFDIKKEAALAIAN----------------------ATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390 (458)
Q Consensus 333 ~~~~~~~a~~~L~~----------------------l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l 390 (458)
+++++.+|+|++.| ++. +.+....+.+.|+++.|+.++.+++++++..+.+++.++
T Consensus 410 ~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l 487 (529)
T 1jdh_A 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487 (529)
T ss_dssp HHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHH
Confidence 88888877766665 443 345567788999999999999999999999999999998
Q ss_pred HHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 391 LKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
... + .+...+.+.|+++.|..++++++++|+..|.+++.++
T Consensus 488 ~~~-~-------------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 488 AQD-K-------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TTS-H-------------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred hcC-H-------------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 743 1 2478888999999999999999999999999999875
No 12
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=9.2e-39 Score=303.13 Aligned_cols=367 Identities=17% Similarity=0.197 Sum_probs=309.2
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhH
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL 146 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 146 (458)
.+|.|+++|++++ ++++..|+++|.+++.+++..+..+++.|++|.|+++|.++++.++..|+++|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999998 899999999999999877788889999999999999999999999999999999999987888999
Q ss_pred HhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc--------C--------CChHHH
Q 043950 147 VLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH--------L--------DDEEVL 210 (458)
Q Consensus 147 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~--------~--------~~~~~~ 210 (458)
+.+.|+++.++.++..++++++++.++|+|+|++.... .......+++|.|+.++. + .+..+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH-hHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999547889999999999999999843 333333499999999993 2 246677
Q ss_pred HHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHHhCC------CCccchhhHHHHHhHhhcCC-----------------
Q 043950 211 SDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVELLGH------PSPSVLTPALWTVGNIVMGD----------------- 266 (458)
Q Consensus 211 ~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~l~~l~~~~----------------- 266 (458)
..++|+|+|++.. ++..+.+.+. |+++.|+.++.+ .+..+++.++.++.+++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999977 6677778887 999999999985 45678888999999886311
Q ss_pred ---------------------------------hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH--
Q 043950 267 ---------------------------------DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE-- 311 (458)
Q Consensus 267 ---------------------------------~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-- 311 (458)
+...+.+++.++++.++.+|.++.++.+++.|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 112234456678899999998876789999999999999985432
Q ss_pred -HH-HHHH-HcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC------HHHHHH
Q 043950 312 -QI-QAVI-DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD------PKIVTV 382 (458)
Q Consensus 312 -~~-~~l~-~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~------~~v~~~ 382 (458)
.. +..+ +.|++|.|+++|.+++.+++++|+|+|.|++.+. ....++..|+++.|++++...+ +++...
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~---~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP---LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG---GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH---HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 3344 6899999999999999999999999999998742 3344566789999999998764 368889
Q ss_pred HHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC-ChHHHHHHHHHHHHhcCCCCCC
Q 043950 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD-NNGIREKAVKILETYWCGRVVG 452 (458)
Q Consensus 383 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~~~ 452 (458)
++++|.+++..... ....+.+.|+++.|.+|+.++ ++++++.|.++|.+||...+..
T Consensus 397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 99999999865443 478888999999999999999 9999999999999999887754
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.1e-38 Score=302.88 Aligned_cols=368 Identities=26% Similarity=0.348 Sum_probs=325.8
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 23 EILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 23 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
+.+|.+++.++++ ++.++..|+++|.+++... .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 7899999999988 8999999999999998865 566777888999999999999988 899999999999999988889
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950 102 TNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l 179 (458)
+..+++.|+++.|+.++.+ .+..++..++++|++++.+. +..+... ..++++.++..+ .+.++.++..++|++.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999995 78999999999999999765 4433333 368999999999 677889999999999999
Q ss_pred hcCCCC-CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950 180 CKGKPQ-PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258 (458)
Q Consensus 180 ~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 258 (458)
+...+. .......+++|.++.++.++++.++..+++++++++...+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 986422 2222336899999999999999999999999999998888777778889999999999999999999999999
Q ss_pred HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhH
Q 043950 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIK 337 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~ 337 (458)
|++++.+++...+.+++.++++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|++++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999998 999999999999999974 77888889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 338 KEAALAIANATVRGTH----------EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 338 ~~a~~~L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
..++++|.+++..+.. .....+.+.|+++.|..++.+++++++..+..+|.+++..++
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999875432 245677888999999999999999999999999999996544
No 14
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.8e-39 Score=297.58 Aligned_cols=372 Identities=18% Similarity=0.192 Sum_probs=296.6
Q ss_pred hhhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC-----------HHHHH
Q 043950 17 NLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY-----------PQLQY 85 (458)
Q Consensus 17 ~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-----------~~i~~ 85 (458)
....+.+.++.+++.+.+.|+. ...+.|..+... .+....+++.|.+|.|+++|+..+. ++++.
T Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~ 100 (458)
T 3nmz_A 26 HLGTKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARA 100 (458)
T ss_dssp -------------------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHH
T ss_pred ccCchHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHH
Confidence 4566777899999999988877 356667676553 4555789999999999999997542 69999
Q ss_pred HHHHHHHHHcCCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhcCCC
Q 043950 86 EAAWALTNIASGTSMNTNVVIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAADSP 141 (458)
Q Consensus 86 ~a~~~L~~l~~~~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----~~~-------~a~~~L~~l~~~~~ 141 (458)
.|+|+|.|++.+.++......+.+++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +
T Consensus 101 ~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~ 179 (458)
T 3nmz_A 101 RASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-E 179 (458)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-H
Confidence 99999999999888888887777777 66677776542 22 444 899999999766 7
Q ss_pred chhhHHhhhCCHHHHHHHhcc----------cccHHHHHHHHHHHHHhhcCCCCCChhh--hhhhHHHHHHhhcCCChHH
Q 043950 142 GCRNLVLREEALIPLLAQLNE----------HAKLSMLRIATWTLSKLCKGKPQPPFDQ--VRPALPALAQLIHLDDEEV 209 (458)
Q Consensus 142 ~~~~~~~~~~~l~~l~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~~ 209 (458)
.+|+.+.+.|++++|+.++.. +.++.+++.++|+|.||+.+.+...... ..+++|.|+.+|.++++++
T Consensus 180 e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v 259 (458)
T 3nmz_A 180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL 259 (458)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHH
Confidence 889999999999999999942 2356789999999999998763222222 3567999999999999999
Q ss_pred HHHHHHHHHHhccC-ChhhHHHHHHhCcHHHHHHHh-CCCCccchhhHHHHHhHhhcCChhhHHHHH-hcCChHHHHHHh
Q 043950 210 LSDACWTLSYLSYG-TNDKIQVVIEAGVCRRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALL 286 (458)
Q Consensus 210 ~~~~~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll 286 (458)
++.++++|+|++.. ++.....+.+.|+++.|+++| .+.+..+++.|+.+|+||+..+++....+. ..|+++.|+.+|
T Consensus 260 ~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL 339 (458)
T 3nmz_A 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339 (458)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh
Confidence 99999999999975 456677788999999999975 556788999999999999986655555665 789999999999
Q ss_pred ccCChh---hHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 043950 287 IHNHKK---SIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLV 360 (458)
Q Consensus 287 ~~~~~~---~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~ 360 (458)
.++.+. .+++.|+|+|.|++. +++++.+.+.+.|+++.|+.+|.+++.+++++|+++|.|++.. ++++...+.
T Consensus 340 ~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~ 418 (458)
T 3nmz_A 340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALW 418 (458)
T ss_dssp TCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 987332 499999999999997 7889999999999999999999999999999999999999864 678889999
Q ss_pred HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 361 REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 361 ~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
+.|+++.|++++.+.++.+++.+.++|.+++...+
T Consensus 419 ~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999997653
No 15
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=9.9e-38 Score=306.31 Aligned_cols=407 Identities=15% Similarity=0.121 Sum_probs=336.1
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-
Q 043950 21 KLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS- 99 (458)
Q Consensus 21 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~- 99 (458)
..|.+|.++.++.++++.++..|++++.+++++ ...++.+.+.|+ +.|+.++++++ +.++..|+.+|++++....
T Consensus 288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 288 REGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTT
T ss_pred ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhcccccc
Confidence 558999999999999999999999999998665 677888888875 99999999887 8999999999999975221
Q ss_pred hhHHHHHhCC----ChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950 100 MNTNVVIDHG----AVPIFVKLLASP--SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT 173 (458)
Q Consensus 100 ~~~~~~~~~~----~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~ 173 (458)
+.....++.| +++.++++|.++ ++++++.|+|+|++++.+.+.....+.+.|+++.|+.++ .+.++.++..++
T Consensus 364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al 442 (810)
T 3now_A 364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVV 442 (810)
T ss_dssp TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHH
T ss_pred CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHH
Confidence 2222233333 367788888887 889999999999999877665555555789999999999 567888999999
Q ss_pred HHHHHhhcCCCCC---------------------------------ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950 174 WTLSKLCKGKPQP---------------------------------PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220 (458)
Q Consensus 174 ~~l~~l~~~~~~~---------------------------------~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 220 (458)
|+|.|++...+.. ......|++|.++.++.++++.+++.++|+|+|+
T Consensus 443 ~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL 522 (810)
T 3now_A 443 TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV 522 (810)
T ss_dssp HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999854211 1122368999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHH-HHHhcCChHHHHHHhccCChhhHHHHH
Q 043950 221 SYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQ-CIINHGAVPCLLALLIHNHKKSIKKVA 298 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~-~~~~~~~~~~l~~ll~~~~~~~v~~~a 298 (458)
+. +.+....+++.|+++.|+.++.++++..++.|+++|++++...+ ...- .....+++++|+.+|.++.+...+..|
T Consensus 523 A~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eA 601 (810)
T 3now_A 523 CG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFES 601 (810)
T ss_dssp HT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHH
T ss_pred cC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHH
Confidence 95 45577789999999999999999988999999999999987533 2210 001135899999999865334456789
Q ss_pred HHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH-CCChHHHHhhccCCCH
Q 043950 299 CWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR-EGCIKPLCDLLLCVDP 377 (458)
Q Consensus 299 ~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~ 377 (458)
+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+++++|++.+ ++....+.+ .|.++.|+.++++++.
T Consensus 602 l~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~ 679 (810)
T 3now_A 602 LMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDE 679 (810)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSH
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCH
Confidence 9999999998888899999999999999999999999999999999999974 355555565 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh-cchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950 378 KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE-DEGFKKIEGLKSHDNNGIREKAVKILETYWCG 448 (458)
Q Consensus 378 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 448 (458)
.++..++++|.++....+.. ...+.+ .|+++.|..|+.+++++++..|.+.+.++...
T Consensus 680 ~vq~~Aa~ALanLt~~s~~~-------------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 680 ETATACAGALAIITSVSVKC-------------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHHHHHCHHH-------------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHH-------------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999998743332 344445 89999999999999999999999999998764
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=7.2e-39 Score=303.87 Aligned_cols=362 Identities=16% Similarity=0.175 Sum_probs=303.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.+|.++++|+++++.++..|+++|++++..+ +.....+.+.|++|.|+++|++++ ++++..|+++|.|++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999997653 455668999999999999999988 89999999999999997799999
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc--------c-------ccHH
Q 043950 104 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--------H-------AKLS 167 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------~-------~~~~ 167 (458)
.+++.|++|.|+++|. ++++++++.++|+|+|++.+ +..+..+.+ |+++.|+.++.. . .++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78999999999999999988 667887888 999999999931 1 3567
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhh-h-hhHHHHHHhhcC------CChHHHHHHHHHHHHhccC----------------
Q 043950 168 MLRIATWTLSKLCKGKPQPPFDQV-R-PALPALAQLIHL------DDEEVLSDACWTLSYLSYG---------------- 223 (458)
Q Consensus 168 ~~~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~---------------- 223 (458)
+++.++|+|+||+.. +....... . |+++.|+.++++ .+..+++.+++++.+++..
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999987 33222223 3 999999999985 4667888888889888621
Q ss_pred ----------------------------------ChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCChh
Q 043950 224 ----------------------------------TNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDDF 268 (458)
Q Consensus 224 ----------------------------------~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~ 268 (458)
.+...+.+++.|+++.++.+|.+. ++.+++.|+|+|+|++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 011223455677889999999764 578999999999999987654
Q ss_pred hH----HHHH-hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCCh------hhH
Q 043950 269 QT----QCII-NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEF------DIK 337 (458)
Q Consensus 269 ~~----~~~~-~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~------~~~ 337 (458)
.. +..+ +.|+++.|+++|.++ +.++++.|+|+|+|++.+. ....++..|+++.|+++|...++ ++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 32 3344 689999999999999 9999999999999999753 34556667899999999988643 688
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhc
Q 043950 338 KEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV-DPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 338 ~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~~~~l~~l~~~~ 394 (458)
..++++|.+++... .+....+.+.|+++.|++++.+. ++++++.|.++|.+++...
T Consensus 395 ~~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 395 SSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 89999999998764 47788888999999999999999 9999999999999998643
No 17
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=302.63 Aligned_cols=406 Identities=18% Similarity=0.173 Sum_probs=346.4
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
...|.+|.|+++|+++++.++..|+++|.+++... ......+.+.|+++.|++++++++ +.++..++.+|.+++..++
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCc
Confidence 34578999999999999999999999999998875 566777889999999999999988 7899999999999998789
Q ss_pred hhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950 100 MNTNVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK 178 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~ 178 (458)
+.+..+.+.|+++.|+.++.+. ...++..++.+|.+++.. +..+..+.+.|+++.++.++ .+.++.+++.++|+|.+
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence 9999999999999999999875 467889999999999864 55678888999999999999 56688999999999999
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC--ccchhhHH
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS--PSVLTPAL 256 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~ 256 (458)
++...+. .....++++.++.++.+.+++++..++++|++++..++...+.+.+.|+++.|+.++.+.+ +.++..|+
T Consensus 251 L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~ 328 (644)
T 2z6h_A 251 LSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328 (644)
T ss_dssp HGGGCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Hhhcchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHH
Confidence 9987533 2344689999999999999999999999999999887777888999999999999998732 68999999
Q ss_pred HHHhHhhcCChh---hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950 257 WTVGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE 333 (458)
Q Consensus 257 ~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 333 (458)
++|++++..+++ ....+.+.++++.|+++|.++.++.+++.|+|+|+|++.+.. ....+.+.|+++.|++++.+.+
T Consensus 329 ~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~ 407 (644)
T 2z6h_A 329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAH 407 (644)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccc
Confidence 999999875442 334477889999999999987446999999999999998653 4478889999999999998754
Q ss_pred h----------------------hhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950 334 F----------------------DIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL 391 (458)
Q Consensus 334 ~----------------------~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~ 391 (458)
. +++..++.+|.+++. +......+.+.|+++.|+.++.+.+++++..+.++|.++.
T Consensus 408 ~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 408 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp HHHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3 455667777777775 3456677889999999999999999999999999999987
Q ss_pred HhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950 392 KVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG 448 (458)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 448 (458)
.. + .++..+.+.|+++.|..++.+++++++..|.++|.++...
T Consensus 486 ~~-~-------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 486 QD-K-------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp TS-H-------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred cC-H-------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 53 1 1478889999999999999999999987766666555443
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.4e-37 Score=292.89 Aligned_cols=366 Identities=19% Similarity=0.201 Sum_probs=302.7
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-Chh
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG-TSM 100 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-~~~ 100 (458)
.+.+|.++++|.++++.+|..|+++|.+++... .+....+.+.|+||.|+++|.+++ +++++.|+++|.|++.+ +++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHH
Confidence 457999999999999999999999999998764 678889999999999999999998 89999999999999985 689
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-----------------c
Q 043950 101 NTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-----------------E 162 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-----------------~ 162 (458)
++..+++.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.+ ++++.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999997 6789999999999999885 455666664 67999999762 1
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCChhhh--hhhHHHHHHhhcC------CChHHHHHHHHHHHHhccCCh---------
Q 043950 163 HAKLSMLRIATWTLSKLCKGKPQPPFDQV--RPALPALAQLIHL------DDEEVLSDACWTLSYLSYGTN--------- 225 (458)
Q Consensus 163 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~~~--------- 225 (458)
..++.++.+++++|.||+...+.....+. .++++.|+.++++ .+...++.++++|.|++....
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 23578999999999999987533222222 6778899999874 467899999999999985421
Q ss_pred ----------------hhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHhhcCChhh---HH-HHHhcCChHHHHH
Q 043950 226 ----------------DKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQ---TQ-CIINHGAVPCLLA 284 (458)
Q Consensus 226 ----------------~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~---~~-~~~~~~~~~~l~~ 284 (458)
...+.+.+.++++.++.++. +.++.+++.|+++|.||+.+.... .+ .+.+.++++.|++
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 11122334466788899996 457889999999999999865322 22 3446789999999
Q ss_pred HhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--------ChhhHHHHHHHHHHhhcCCCHHHH
Q 043950 285 LLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--------EFDIKKEAALAIANATVRGTHEQI 356 (458)
Q Consensus 285 ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--------~~~~~~~a~~~L~~l~~~~~~~~~ 356 (458)
+|.++ +..+++.|+|+|+|++.+.. . +..+..|+++.|+.+|.+. +.+++..|+++|.|++.. +.++.
T Consensus 363 LL~s~-~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~ 438 (584)
T 3l6x_A 363 LLTNE-HERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAA 438 (584)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHcCC-CHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHH
Confidence 99999 89999999999999998542 2 3345778999999999876 357889999999999875 67889
Q ss_pred HHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhch
Q 043950 357 KYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 357 ~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~~~~~ 395 (458)
+.+.+.|+++.|+.++.+. .+.+++.|.++|.++..+.+
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 9999999999999999875 78999999999999986443
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.4e-35 Score=298.93 Aligned_cols=408 Identities=18% Similarity=0.176 Sum_probs=350.1
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
...|.+|.|+++|+++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ ..++..++.+|.+++..++
T Consensus 231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCh
Confidence 34589999999999999999999999999998874 566777778999999999999987 8999999999999998889
Q ss_pred hhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950 100 MNTNVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK 178 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~ 178 (458)
+.+..+.+.|+++.|+.++++.+ ...+..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.++.+++.++|+|.+
T Consensus 309 e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~ 386 (780)
T 2z6g_A 309 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRN 386 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 99999999999999999998754 55667889999999965 45677888899999999999 56688899999999999
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-C-ccchhhHH
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-S-PSVLTPAL 256 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~-~~~~~~a~ 256 (458)
++...+. .....++++.++.++.+.++.++..++++|++++..++.....+.+.|+++.|+.++.+. + +.++..|+
T Consensus 387 L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al 464 (780)
T 2z6g_A 387 LSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464 (780)
T ss_dssp HHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Hhccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHH
Confidence 9987533 233478999999999999999999999999999988877788889999999999999863 3 38999999
Q ss_pred HHHhHhhcCChhh---HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950 257 WTVGNIVMGDDFQ---TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE 333 (458)
Q Consensus 257 ~~l~~l~~~~~~~---~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 333 (458)
++|++++..+++. ...+...++++.|+.+|.++.++.+++.|+|+|+|++.+. .....+.+.|+++.|++++.+.+
T Consensus 465 ~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~ 543 (780)
T 2z6g_A 465 CALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAH 543 (780)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcc
Confidence 9999998765442 3467788999999999998834599999999999999754 55578889999999999997654
Q ss_pred ----------------------hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950 334 ----------------------FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL 391 (458)
Q Consensus 334 ----------------------~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~ 391 (458)
.+++..++.+|.+++. +......+.+.|+++.|+.++.+.++.++..+..+|.++.
T Consensus 544 ~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 544 QDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp HHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3456677888888875 4566777889999999999999999999999999999997
Q ss_pred HhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950 392 KVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRV 450 (458)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 450 (458)
... .++..+.+.|+++.|..++++++++|+..|.++|.++....+
T Consensus 622 ~~~--------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 622 QDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp TSH--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred cCH--------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 431 247888999999999999999999999999999888877554
No 20
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=289.39 Aligned_cols=343 Identities=16% Similarity=0.151 Sum_probs=284.8
Q ss_pred cccCCCCCCCCC-hhhHhhccHHHHHHhhcCC------------CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCH---
Q 043950 5 QRFLPSAPRPSL-NLQTKLEILPAMVAGVWSD------------DNSLQLEATTQFRILLSIERSPRIEDVIQAGVV--- 68 (458)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~i~~l~~~l~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i--- 68 (458)
|+++.-...++. ..+++.|.+|.|+++|+.. ++++++.|+|+|.+++++. ++......+.+++
T Consensus 51 ~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l 129 (458)
T 3nmz_A 51 RTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLL 129 (458)
T ss_dssp HHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHH
Confidence 344443444443 5678899999999999963 3799999999999999987 6666776777777
Q ss_pred -------HHHHHhhcCCC-CHH-----HHH-------HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--------
Q 043950 69 -------PRFVEFLMRED-YPQ-----LQY-------EAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-------- 120 (458)
Q Consensus 69 -------~~L~~ll~~~~-~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-------- 120 (458)
+.+++++.+.. ..+ +++ +|+|+|.|++. ++++|+.+++.|+++.|+.++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~ 208 (458)
T 3nmz_A 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLT 208 (458)
T ss_dssp HHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccc
Confidence 66777776642 112 444 99999999987 59999999999999999999942
Q ss_pred ---CCHHHHHHHHHHHHHhhcCCCchhhHHhh-hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC--CCCChhhhhhh
Q 043950 121 ---PSDDVREQAVWALGNVAADSPGCRNLVLR-EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK--PQPPFDQVRPA 194 (458)
Q Consensus 121 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~ 194 (458)
.++.+++.|+|+|.|++.+++..+..+.. .|.++.|+.+| .+++++++..++|+|.+|+... .........|+
T Consensus 209 ~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 34778999999999999887766666644 56699999999 6888999999999999999752 12223334799
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHhccCChhhHHHHH-HhCcHHHHHHHhCCCCcc----chhhHHHHHhHhhc---C
Q 043950 195 LPALAQLI-HLDDEEVLSDACWTLSYLSYGTNDKIQVVI-EAGVCRRLVELLGHPSPS----VLTPALWTVGNIVM---G 265 (458)
Q Consensus 195 l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~----~~~~a~~~l~~l~~---~ 265 (458)
+|.|+.+| .+.+..+++.++.+++|++...++....+. ..|+++.|+.+|.+++.. +++.|+++|.|++. .
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 99999974 567899999999999999974544444455 789999999999987553 89999999999997 6
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIA 345 (458)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 345 (458)
+++..+.+.+.|+++.|+.+|.++ +..++++|+|+|+|++.+++++...+++.|+++.|++++.+++.++++.|+++|.
T Consensus 368 ~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~ 446 (458)
T 3nmz_A 368 NEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 888888999999999999999998 8999999999999999888999999999999999999999999999999999999
Q ss_pred HhhcCC
Q 043950 346 NATVRG 351 (458)
Q Consensus 346 ~l~~~~ 351 (458)
|++.+.
T Consensus 447 nL~~~~ 452 (458)
T 3nmz_A 447 NLMANR 452 (458)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 999864
No 21
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=6.6e-36 Score=284.11 Aligned_cols=368 Identities=18% Similarity=0.215 Sum_probs=303.5
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCc
Q 043950 64 QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD-SPG 142 (458)
Q Consensus 64 ~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~ 142 (458)
..+.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+||.|+.+|.++++.+++.|+++|.||+.. ++.
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4578999999999988 89999999999999988899999999999999999999999999999999999999985 577
Q ss_pred hhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------------------C
Q 043950 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH------------------L 204 (458)
Q Consensus 143 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~------------------~ 204 (458)
.+..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 89999999999999999965578889999999999999864 3333444778999998772 2
Q ss_pred CChHHHHHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHHhCC------CCccchhhHHHHHhHhhcCChh---------
Q 043950 205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVELLGH------PSPSVLTPALWTVGNIVMGDDF--------- 268 (458)
Q Consensus 205 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~l~~l~~~~~~--------- 268 (458)
.+..+++.+.++|.|++..+++..+.+.+. |+++.|+.++.+ .+...++.|+++|.||+.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999998777656667764 667899999864 4567889999999999865211
Q ss_pred ----------------hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH---HHHHHH-HHcCChHHHHHH
Q 043950 269 ----------------QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR---EQIQAV-IDAGLIVPLVNV 328 (458)
Q Consensus 269 ----------------~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~---~~~~~l-~~~~~~~~L~~l 328 (458)
....+++.++++.++.+|....++.+++.|+|+|.|++.+.. ...+.. .+.++++.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 111222335577889999755478999999999999987542 223333 356889999999
Q ss_pred hccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--------CHHHHHHHHHHHHHHHHhchhhccc
Q 043950 329 LQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV--------DPKIVTVCLEGLENILKVGEAEKNT 400 (458)
Q Consensus 329 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~~~~~l~~l~~~~~~~~~~ 400 (458)
|.+++.+++..|+++|.|++.+.. .. .++..|+++.|+.+|.+. .++++..++++|.+++......
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~--~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~--- 437 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDAR--NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA--- 437 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCS--CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HcCCCHHHHHHHHHHHHHHhCChh--HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH---
Confidence 999999999999999999998653 22 334779999999999875 3678889999999998654442
Q ss_pred CCCCCchhHHHHHHHhcchHHHHHhhhcCC--ChHHHHHHHHHHHHhcCCC
Q 043950 401 GSTIGDVNQYARLVEEDEGFKKIEGLKSHD--NNGIREKAVKILETYWCGR 449 (458)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~ 449 (458)
...+.+.|++..|.+++.+. .+.+++.|.++|.++|...
T Consensus 438 ----------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 438 ----------AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp ----------HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ----------HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 67788999999999998775 8999999999999998654
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.6e-35 Score=287.44 Aligned_cols=405 Identities=16% Similarity=0.141 Sum_probs=339.1
Q ss_pred hccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950 22 LEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 22 ~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
.|.++.+++.|.+ +++.++..|+.+|.+++.. .+....+.+.|+++.|++++++++ ++++..|+++|.+++.+++.
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~ 134 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcc
Confidence 4789999999975 5899999999999999665 567888999999999999999988 89999999999999997677
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
.+..+.+.|+++.|+.++.+++.+++..++.+|.+++..++..+..+.+.|+++.++..+....+...+..++.++.+++
T Consensus 135 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 214 (529)
T 1jdh_A 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 88888889999999999999999999999999999998888888888899999999999976666778888999999999
Q ss_pred cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
............++++.++.++.++++.++..+++++.+++...+... ...++++.|++++.++++.++..|+++|+
T Consensus 215 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 764433333447899999999999999999999999999996654321 12478999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhhcCCHH---HHHHHHHcCChHHHHHHhccCC-hh
Q 043950 261 NIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNRE---QIQAVIDAGLIVPLVNVLQDAE-FD 335 (458)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~ll~~~~-~~ 335 (458)
+++..+++....+.+.|+++.++.++.+.. ++.++..|+++|+|++.++++ ....+.+.|+++.|++++.+++ ..
T Consensus 292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~ 371 (529)
T 1jdh_A 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence 999988888888999999999999998641 378999999999999875322 4567889999999999999876 59
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHH----------------------HHHh
Q 043950 336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLEN----------------------ILKV 393 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~----------------------l~~~ 393 (458)
++..+++++.|++... .....+.+.|+++.|+.++.+.+++++..+.|++.+ +...
T Consensus 372 v~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~ 449 (529)
T 1jdh_A 372 LIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 449 (529)
T ss_dssp HHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999753 334678899999999999988777777766655554 3321
Q ss_pred chhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950 394 GEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG 448 (458)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 448 (458)
. ..+..+.+.|+++.|..+..+++++++..|.+.+.++..+
T Consensus 450 ~--------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 450 V--------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp H--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred c--------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 1 1256678899999999999999999999999998887643
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=285.76 Aligned_cols=405 Identities=17% Similarity=0.155 Sum_probs=344.1
Q ss_pred hccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950 22 LEILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 22 ~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
.+.++.+++.|.++ ++.++..|+.+|.+++.. .+....+.+.|+++.|++++++++ +.++..|+++|.+++...+.
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~ 131 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG 131 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTT
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcch
Confidence 37799999999865 899999999999998665 457888889999999999999988 89999999999999987677
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
.+..+.+.|+++.|+.++.++++.++..++.+|.+++...+..+..+.+.|+++.++.++........+..++.+|.+++
T Consensus 132 ~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs 211 (644)
T 2z6h_A 132 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211 (644)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999999999999998777788888899999999999976666778899999999999
Q ss_pred cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
............++++.++.++.+.+..++..++++|.+++...... ....++++.|++++.++++.++..|+++|+
T Consensus 212 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 212 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 76544444444789999999999999999999999999999654332 112378999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCCh-hhHHHHHHHHHHHhhcCCH--HH-HHHHHHcCChHHHHHHhccCC-hh
Q 043950 261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHK-KSIKKVACWTISNITAGNR--EQ-IQAVIDAGLIVPLVNVLQDAE-FD 335 (458)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~~v~~~a~~~l~nl~~~~~--~~-~~~l~~~~~~~~L~~ll~~~~-~~ 335 (458)
+++..++.....+.+.|+++.|+.++.+..+ +.++..|+++|+|++..++ +. ...+.+.|+++.|+++|.+.+ ..
T Consensus 289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~ 368 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHH
T ss_pred HHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchH
Confidence 9999888888889999999999999987523 7999999999999997432 23 334778899999999999875 69
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHh
Q 043950 336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD----------------------PKIVTVCLEGLENILKV 393 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~v~~~~~~~l~~l~~~ 393 (458)
+++.|+++|.|++... .....+.+.|+++.|+.++.+.+ ++++..++.+|.+++..
T Consensus 369 v~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~ 446 (644)
T 2z6h_A 369 LIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446 (644)
T ss_dssp HHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999998753 33477889999999999988643 45666777777777754
Q ss_pred chhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950 394 GEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG 448 (458)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 448 (458)
.. .+..+.+.|+++.|..++.+++++++..|.+.+.++...
T Consensus 447 ~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 447 VH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp HH--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HH--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 32 266778999999999999999999999999998887653
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.2e-33 Score=284.80 Aligned_cols=404 Identities=17% Similarity=0.156 Sum_probs=341.5
Q ss_pred hccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950 22 LEILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 22 ~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
.+.++.|++.|.++ ++.++..|+.+|.+++.. ..+...+.+.|+++.|+++|++++ +.++..|+++|.+++...++
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTT
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChh
Confidence 36799999999854 899999999999998665 466778889999999999999998 89999999999999997778
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
.+..+.+.|+++.|+.++.+++..++..++.+|.+++..++..+..+.+.|+++.++.++...........++.++.+++
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999999998777788888888999999999976666667788899999999
Q ss_pred cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
............++++.++.++.+.+..++..+++++.+++...... ....++++.|+.++.++++.++..|+++|+
T Consensus 348 ~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 348 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp TSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 76433333344789999999999999999999999999999655432 122468999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCCh-hhHHHHHHHHHHHhhcCCHH---HHHHHHHcCChHHHHHHhccCCh-h
Q 043950 261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHK-KSIKKVACWTISNITAGNRE---QIQAVIDAGLIVPLVNVLQDAEF-D 335 (458)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~ll~~~~~-~ 335 (458)
+|+..++.....+.+.|+++.|+.+|.+..+ ..++..|+++|+|++..+++ ....+.+.|+++.|++++.+++. .
T Consensus 425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~ 504 (780)
T 2z6g_A 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP 504 (780)
T ss_dssp HHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHH
Confidence 9999888888889999999999999987423 38999999999999874332 23467789999999999998765 9
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHh
Q 043950 336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD----------------------PKIVTVCLEGLENILKV 393 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~v~~~~~~~l~~l~~~ 393 (458)
++..|+++|+|++.. ......+.+.|+++.|+.++.+.+ ++++..++.+|.++...
T Consensus 505 v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~ 582 (780)
T 2z6g_A 505 LIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582 (780)
T ss_dssp HHHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence 999999999999973 344577889999999999997643 34666777788877642
Q ss_pred chhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950 394 GEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 447 (458)
. . .+..+.+.|+++.|..++.+++++++..|...+.++..
T Consensus 583 ~-~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 622 (780)
T 2z6g_A 583 I-H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622 (780)
T ss_dssp H-H-------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred h-h-------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 1 1 25677899999999999999999999999998887754
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=4.8e-31 Score=238.72 Aligned_cols=269 Identities=19% Similarity=0.166 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhcCCCchhhHHhh
Q 043950 81 PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAADSPGCRNLVLR 149 (458)
Q Consensus 81 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 149 (458)
...+..|+++|.|++.+ +++|+.+++.|+++.|+.+|.+ .++.+++.|+|+|.|++.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566899999999994 8999999999999999999952 24789999999999999887766666644
Q ss_pred -hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh
Q 043950 150 -EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK--PQPPFDQVRPALPALAQLI-HLDDEEVLSDACWTLSYLSYGTN 225 (458)
Q Consensus 150 -~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~ 225 (458)
.|.++.|+.++ .+++++++..++|+|.+|+... .........|++|.|+.+| .+.+.++++.++.+|+|++...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45699999999 6888999999999999999852 2223333479999999974 66789999999999999997565
Q ss_pred hhHHHHH-HhCcHHHHHHHhCCCCc----cchhhHHHHHhHhhc---CChhhHHHHHhcCChHHHHHHhccCChhhHHHH
Q 043950 226 DKIQVVI-EAGVCRRLVELLGHPSP----SVLTPALWTVGNIVM---GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKV 297 (458)
Q Consensus 226 ~~~~~~~-~~~~i~~L~~ll~~~~~----~~~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~ 297 (458)
+....+. ..|+++.|+++|.++++ .+++.|+++|.|++. .+++.++.+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5445455 78999999999998654 389999999999997 6888888899999999999999998 8999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950 298 ACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 298 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 352 (458)
|+|+|+|++.+++++.+.+.+.|+++.|++++.+++.++++.|+++|.|++.+..
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999998888999999999999999999999999999999999999998754
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.7e-31 Score=239.46 Aligned_cols=273 Identities=19% Similarity=0.151 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC----------CCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE----------DYPQLQYEAAWALTNIASGTSMNTNVVI 106 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 106 (458)
...+..|+++|.+++.+ ++.++.+++.|+++.|+.+|..+ ..++++..|+++|.|++.++++.+..+.
T Consensus 46 ~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34556899999999665 68899999999999999999521 1267999999999999997777887776
Q ss_pred hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC-
Q 043950 107 DH-GAVPIFVKLLASPSDDVREQAVWALGNVAAD-SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK- 183 (458)
Q Consensus 107 ~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~- 183 (458)
.. |.+|.|+.+|.++++++++.++|+|.||+.. ++..+..+.+.|+++.|+.++..+.++.+++.++++|++|+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 54 5599999999999999999999999999975 55678889999999999998767778899999999999999854
Q ss_pred CCCChhh-hhhhHHHHHHhhcCCCh----HHHHHHHHHHHHhcc---CChhhHHHHHHhCcHHHHHHHhCCCCccchhhH
Q 043950 184 PQPPFDQ-VRPALPALAQLIHLDDE----EVLSDACWTLSYLSY---GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA 255 (458)
Q Consensus 184 ~~~~~~~-~~~~l~~l~~ll~~~~~----~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 255 (458)
....... ..|++|.|+.++.+.++ ++++.++++|.|++. ..++..+.+.+.|+++.|+.+|.+++..+++.|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 2222233 47999999999987654 599999999999996 567777889999999999999999999999999
Q ss_pred HHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950 256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ 312 (458)
Q Consensus 256 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 312 (458)
+++|+|++..+++....+.+.|+++.|+.++.++ +..+++.|+|+|.|++.+++..
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999988888999999999999999999998 9999999999999999865443
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.6e-27 Score=209.06 Aligned_cols=240 Identities=26% Similarity=0.382 Sum_probs=220.8
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
|.++.|+++|.+++ ++++..|+++|.+++...++.+..+++.|+++.|+.++.++++.++..++++|++++.+.+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999999 89999999999999998888999999999999999999999999999999999999998888889
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC-CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ-PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT 224 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 224 (458)
.+.+.|+++.++..+ .++++.++..++|+|.+++...+. .......++++.++.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 678899999999999999965432 223334789999999999999999999999999999888
Q ss_pred hhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950 225 NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN 304 (458)
Q Consensus 225 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n 304 (458)
+...+.+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.+++.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 87778899999999999999999999999999999999998888888999999999999999998 89999999999999
Q ss_pred hhcC
Q 043950 305 ITAG 308 (458)
Q Consensus 305 l~~~ 308 (458)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9863
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=2.9e-27 Score=207.40 Aligned_cols=242 Identities=26% Similarity=0.336 Sum_probs=221.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+.+|.+++.|+++++.++..|+++|.+++... .+....+.+.|+++.|++++++++ ++++..|+++|++++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence 67899999999999999999999999998875 467888999999999999999998 8999999999999999779999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
..+.+.|+++.|+.++.++++.++..++++|++++...+..+..+.+.|+++.++..+ .++++.++..++++|.+++..
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988888888889999999999999 677899999999999999986
Q ss_pred CCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950 183 KPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261 (458)
Q Consensus 183 ~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~ 261 (458)
.+.. ......++++.++.++.++++.++..++++|++++..++...+.+.+.|+++.|++++.++++.++..|+++|++
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5332 233348899999999999999999999999999998788888889999999999999999999999999999999
Q ss_pred hhcCCh
Q 043950 262 IVMGDD 267 (458)
Q Consensus 262 l~~~~~ 267 (458)
++...+
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 987554
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.2e-27 Score=209.63 Aligned_cols=239 Identities=33% Similarity=0.515 Sum_probs=218.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
...+.++++|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.++.++++.++..++++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46899999999999 79999999999887665778888999999999999999999999999999999999998888888
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT 224 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 224 (458)
.+.+.|+++.++.++ .++++.++..++|+|.+++...+.. ......+++|.++.++.++++.++..++++|++++..+
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999876444 34445789999999999999999999999999999888
Q ss_pred hhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950 225 NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN 304 (458)
Q Consensus 225 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n 304 (458)
+.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988888888899999999999999998 99999999999999
Q ss_pred hhc
Q 043950 305 ITA 307 (458)
Q Consensus 305 l~~ 307 (458)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.4e-27 Score=207.82 Aligned_cols=238 Identities=35% Similarity=0.523 Sum_probs=215.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.++.+++.|+++++.++..|+++|+++++.. .+....+.+.|+++.|++++++++ ++++..|+++|++++.++++.+.
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 4889999999999999999999999887763 677888999999999999999998 89999999999999998899999
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
.+++.|+++.|+.++.++++.+++.++++|++++.+.+.....+.+.|+++.++.++ .++++.++..++|+|.+++...
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999887765447788999999999999 6778999999999999999865
Q ss_pred CCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950 184 PQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262 (458)
Q Consensus 184 ~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l 262 (458)
+... .....++++.++.++.++++.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3222 223378999999999999999999999999999988888888899999999999999999999999999999999
Q ss_pred hc
Q 043950 263 VM 264 (458)
Q Consensus 263 ~~ 264 (458)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.94 E-value=1.3e-25 Score=197.82 Aligned_cols=236 Identities=16% Similarity=0.115 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH-HhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHH
Q 043950 207 EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE-LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL 285 (458)
Q Consensus 207 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l 285 (458)
.+-+..++..|.+++...+ ....+...|+++.++. +|.++++.++..|+|+|++++..++...+.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4567788899999986544 5666888999999999 9999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCCh
Q 043950 286 LIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCI 365 (458)
Q Consensus 286 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l 365 (458)
|+++++..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|.+++.+ +++.+..+.+.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 99644789999999999999999888888999999999999999999999999999999999986 56788899999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC-ChHHHHHHHHHHHH
Q 043950 366 KPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD-NNGIREKAVKILET 444 (458)
Q Consensus 366 ~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~ 444 (458)
+.|+.++.+++++++..++.+|.+++...+.....+. .....+...+++ .+..++.++ +.++++++..++++
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987443211000 011224455533 355666565 78999999999999
Q ss_pred hcCCCCC
Q 043950 445 YWCGRVV 451 (458)
Q Consensus 445 ~~~~~~~ 451 (458)
||..+++
T Consensus 285 ~f~~~~~ 291 (296)
T 1xqr_A 285 CFSSPAD 291 (296)
T ss_dssp HCC----
T ss_pred HcCCCCC
Confidence 9976654
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-24 Score=209.72 Aligned_cols=389 Identities=13% Similarity=0.088 Sum_probs=296.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
..++.|.+.+++ ..++..|+-.|+++....+... ..+. ...+.+.+.+.+++ .+.+..|++.|..++. .++.+
T Consensus 296 ~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VK 368 (778)
T 3opb_A 296 NYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVK 368 (778)
T ss_dssp HHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHH
T ss_pred hHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHH
Confidence 457788888865 4788899999999876542211 1111 25678888888877 5669999999999998 68888
Q ss_pred HHHHhC-CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCc--------------------------------------
Q 043950 103 NVVIDH-GAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPG-------------------------------------- 142 (458)
Q Consensus 103 ~~~~~~-~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-------------------------------------- 142 (458)
..+.+. +.++.|+.++++ .+..+...++.+|.|++.+.+.
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence 888765 669999999985 6778899999999999974431
Q ss_pred hhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChH---HHHHHHHHHHH
Q 043950 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEE---VLSDACWTLSY 219 (458)
Q Consensus 143 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~---~~~~~~~~l~~ 219 (458)
.+..+.+.|+++.|+.++ .+.++.++..++|++.+++.+...+......|+++.|+.++.+.... .+..|+.+|.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 234567889999999998 77889999999999999998765555566689999999999877544 89999999999
Q ss_pred hccCChhhHHHHH---HhCcHHHHHHHhCC-CCcc-------------chhhHHHHHhHhhcCC----hhhHHHHHhc-C
Q 043950 220 LSYGTNDKIQVVI---EAGVCRRLVELLGH-PSPS-------------VLTPALWTVGNIVMGD----DFQTQCIINH-G 277 (458)
Q Consensus 220 l~~~~~~~~~~~~---~~~~i~~L~~ll~~-~~~~-------------~~~~a~~~l~~l~~~~----~~~~~~~~~~-~ 277 (458)
+....+... .+- ..|+++.|+.+|.. +... -+..|+.+|.||+..+ ++.+..++.. |
T Consensus 528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 984433221 111 13899999999983 2211 1668999999999876 2445667775 8
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH-HHHHHc------CChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950 278 AVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI-QAVIDA------GLIVPLVNVLQDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 278 ~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~------~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 350 (458)
+++.+..++.++ +..+|+.|+++++|++.+ ++.+ +.+.+. +-++.|+.++..+|.++|..|.++|++++..
T Consensus 607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999998 889999999999999974 3433 233321 2378999999999999999999999999753
Q ss_pred CCHHHHHHHHHC-CChHHHHhhccC--CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh
Q 043950 351 GTHEQIKYLVRE-GCIKPLCDLLLC--VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK 427 (458)
Q Consensus 351 ~~~~~~~~l~~~-~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 427 (458)
.+..+..+.+. ++++.++.+++. ++++++.+++.++.+++.+..... +...+.....+...++.+..++
T Consensus 685 -~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~l 756 (778)
T 3opb_A 685 -IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG-------TNEVYPLLQENQKLKDALNMSL 756 (778)
T ss_dssp -CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT-------TTSCCHHHHSCHHHHHHHHHHH
T ss_pred -ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC-------ChHHHHHHhcChHHHHHHHHHH
Confidence 45666777776 799999999998 899999999999999998543321 1222455555666777777775
Q ss_pred cCC
Q 043950 428 SHD 430 (458)
Q Consensus 428 ~~~ 430 (458)
.++
T Consensus 757 k~~ 759 (778)
T 3opb_A 757 KRG 759 (778)
T ss_dssp SSS
T ss_pred hCC
Confidence 443
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-23 Score=202.74 Aligned_cols=399 Identities=13% Similarity=0.097 Sum_probs=297.6
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
-|..+.+.+.++++.......++..+.+.++.+ ...+..+..+.++.|.+++++ .+++..|+-+|..+.......
T Consensus 254 e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~ 328 (778)
T 3opb_A 254 KGLSKLFKKRVFEEQDLQFTKELLRLLSSACID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLT 328 (778)
T ss_dssp TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCT
T ss_pred ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCC
Confidence 355677777776544343444555555556763 455666677888999999965 478999999999988733221
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh-hhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL-REEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
...+. ...+.+.+++.+++.+-++.|++.|+.++.+. ..++.+. +.+.+..|+..+....+..+..-++.++.|++
T Consensus 329 ~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt 405 (778)
T 3opb_A 329 CINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS 405 (778)
T ss_dssp TCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred cCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence 11111 24577888888777667999999999997654 4555554 45669999999965567788899999999999
Q ss_pred cCCCCCCh-------------------------------------h--hhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950 181 KGKPQPPF-------------------------------------D--QVRPALPALAQLIHLDDEEVLSDACWTLSYLS 221 (458)
Q Consensus 181 ~~~~~~~~-------------------------------------~--~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 221 (458)
...+.... . ...|++|.|+.++.++++.+++.+++++.+++
T Consensus 406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS 485 (778)
T 3opb_A 406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT 485 (778)
T ss_dssp CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 86532100 0 11688999999999999999999999999999
Q ss_pred cCChhhHHHHHHhCcHHHHHHHhCCCCcc---chhhHHHHHhHhhcCC-hhhHHHHHh----cCChHHHHHHhccCChh-
Q 043950 222 YGTNDKIQVVIEAGVCRRLVELLGHPSPS---VLTPALWTVGNIVMGD-DFQTQCIIN----HGAVPCLLALLIHNHKK- 292 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---~~~~a~~~l~~l~~~~-~~~~~~~~~----~~~~~~l~~ll~~~~~~- 292 (458)
.. ......+++.|+++.|+.++.+.... .+..|+.+|.+++... +.. ++. .+++++|+.+|..++..
T Consensus 486 ~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~---~f~~~~~~~aI~pLv~LL~~~~~~~ 561 (778)
T 3opb_A 486 RS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL---IFKKYSALNAIPFLFELLPRSTPVD 561 (778)
T ss_dssp TS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH---HSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred CC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH---HcCCCccccchHHHHHHcCCCCCcc
Confidence 65 55666689999999999999987544 7999999999998533 332 221 38899999999831121
Q ss_pred ------------hHHHHHHHHHHHhhcCC----HHHHHHHHHc-CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHH
Q 043950 293 ------------SIKKVACWTISNITAGN----REQIQAVIDA-GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQ 355 (458)
Q Consensus 293 ------------~v~~~a~~~l~nl~~~~----~~~~~~l~~~-~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 355 (458)
.-+.+|+.+|.|++..+ ++.+..++.. |+++.|..++.+++..++..|+++++|++... +.
T Consensus 562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~ 639 (778)
T 3opb_A 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LT 639 (778)
T ss_dssp SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GG
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HH
Confidence 23779999999999864 3456778885 99999999999999999999999999999742 32
Q ss_pred H-HHHHHC------CChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh-cchHHHHHhhh
Q 043950 356 I-KYLVRE------GCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE-DEGFKKIEGLK 427 (458)
Q Consensus 356 ~-~~l~~~------~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~ 427 (458)
+ ..+.+. +.++.|+.+++..+.+++..|.++|.++....+.. +..+.+ .++++.+..+.
T Consensus 640 i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-------------a~~ll~~~~gi~~Ll~lL 706 (778)
T 3opb_A 640 IAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-------------AKELLTKKELIENAIQVF 706 (778)
T ss_dssp TGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-------------HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-------------HHHHHHccccHHHHHHHH
Confidence 2 222221 23788999999999999999999999996544432 344444 48999999987
Q ss_pred cC--CChHHHHHHHHHHHHhcC
Q 043950 428 SH--DNNGIREKAVKILETYWC 447 (458)
Q Consensus 428 ~~--~~~~v~~~a~~~l~~~~~ 447 (458)
.+ ++++++.++..++.++++
T Consensus 707 ~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 707 ADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHT
T ss_pred hccCCCHHHHHHHHHHHHHHHH
Confidence 77 899999999999999986
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1.9e-23 Score=177.50 Aligned_cols=199 Identities=36% Similarity=0.529 Sum_probs=185.3
Q ss_pred hhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhH
Q 043950 191 VRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT 270 (458)
Q Consensus 191 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 270 (458)
..+..+.+..+++++++.++..++++|.+++..++.....+.+.|+++.|+++|.++++.++..|+++|++++..++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 36778899999999999999999999999998888888889999999999999999999999999999999998888888
Q ss_pred HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950 271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 350 (458)
..+++.|+++.++.+|.++ ++.++..|+|+|+|++.++++....+.+.|+++.|++++.+++.+++..|+++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999 999999999999999998888888999999999999999999999999999999999985
Q ss_pred CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950 351 GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL 391 (458)
Q Consensus 351 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~ 391 (458)
+++....+.+.|+++.|..++.+++++++..++++|.++.
T Consensus 169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4677788899999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=4.7e-23 Score=175.04 Aligned_cols=199 Identities=32% Similarity=0.470 Sum_probs=180.0
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch
Q 043950 64 QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143 (458)
Q Consensus 64 ~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 143 (458)
..+..+.|+.++.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4578999999999998 899999999999999878999999999999999999999999999999999999999888888
Q ss_pred hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 043950 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY 222 (458)
Q Consensus 144 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~ 222 (458)
+..+.+.|+++.++..+ .++++.++..++|+|.+++...+.. ......++++.++.++.++++.++..++++|++++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88899999999999999 7778999999999999999765322 223347899999999999999999999999999998
Q ss_pred CChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264 (458)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~ 264 (458)
.++.....+.+.|+++.|++++.++++.+++.|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 877788889999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=6.6e-23 Score=180.49 Aligned_cols=226 Identities=15% Similarity=0.175 Sum_probs=186.2
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH-hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH
Q 043950 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQ-LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL 243 (458)
Q Consensus 165 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l 243 (458)
+.+-+..++..|.+++...++.......|++|.++. +|.++++.++..++|+|++++.+++...+.+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 345677888889988886443333344789999999 9999999999999999999998888888889999999999999
Q ss_pred hCC-CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCCh
Q 043950 244 LGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322 (458)
Q Consensus 244 l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 322 (458)
|.+ ++..++..|+|+|++++++++...+.+.+.|+++.|+.+|+++ +..++..|+|+|++++.++++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 986 4788999999999999998888888888999999999999998 99999999999999998888899999999999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHC--CChHHH---Hhhcc-CC-CHHHHHHHHHHHHHHHH
Q 043950 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVRE--GCIKPL---CDLLL-CV-DPKIVTVCLEGLENILK 392 (458)
Q Consensus 323 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--~~l~~L---~~ll~-~~-~~~v~~~~~~~l~~l~~ 392 (458)
+.|+.+|.+++.+++..|+++|.+++... +......... .+...| .+.++ .+ +.++.+.+..++.++|.
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~-~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDF-PQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTC-HHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCC-hhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999863 3322222111 111212 22233 22 46788888888888874
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=161.17 Aligned_cols=197 Identities=18% Similarity=0.139 Sum_probs=169.2
Q ss_pred CHHHHHHhhcCCCCH--HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh
Q 043950 67 VVPRFVEFLMREDYP--QLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 144 (458)
.+|.|+++|.+++ + +++..|++.+.+++..+++.+..+++.|++|.|+++|.++++++++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999988 6 889999999999998789999999999999999999999999999999999999999888889
Q ss_pred hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------------CCChH
Q 043950 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH----------------LDDEE 208 (458)
Q Consensus 145 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~ 208 (458)
..+.+.|++++|+.+|..+.+.++++.++.+|++|+..... ......+++|.|+.++. ..+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999996567889999999999999976533 23344677888887653 13679
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHHhCC------CCccchhhHHHHHhHhhcC
Q 043950 209 VLSDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVELLGH------PSPSVLTPALWTVGNIVMG 265 (458)
Q Consensus 209 ~~~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~l~~l~~~ 265 (458)
+++.+..+|.|++..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776667767765 778999999875 2556789999999999863
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=161.36 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=164.7
Q ss_pred cHHHHHHhhcCCCH--HHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 24 ILPAMVAGVWSDDN--SLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 24 ~i~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
.+|.++++|.++++ +++..|++.+.+++..+ .+....+.+.|++|.|+++|++++ +++|+.|+++|.|++.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 58999999999988 89999999999997664 677888999999999999999988 899999999999999988999
Q ss_pred HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---------------cccc
Q 043950 102 TNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---------------EHAK 165 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---------------~~~~ 165 (458)
+..+.+.|++|.|+++|. +++.+++++++.+|+|++.... .+..+.+ +++++|+..+. ...+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 5789999999999999987654 4555555 46888887652 0136
Q ss_pred HHHHHHHHHHHHHhhcCCCCCChhh--hhhhHHHHHHhhcC------CChHHHHHHHHHHHHhccC
Q 043950 166 LSMLRIATWTLSKLCKGKPQPPFDQ--VRPALPALAQLIHL------DDEEVLSDACWTLSYLSYG 223 (458)
Q Consensus 166 ~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~ 223 (458)
++++.++.++|.||+...+.....+ ..|+++.|+.+++. .+...++.++.+|.|++..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 7899999999999998652333322 25788999999984 2678899999999999843
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.82 E-value=2.3e-18 Score=169.86 Aligned_cols=342 Identities=13% Similarity=0.111 Sum_probs=245.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-hhh
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG-CRN 145 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 145 (458)
++|.+.+++++++ ..+|..++.+|+.++..... ......+++.+..+++++++.+|..++++|+.++...+. .+.
T Consensus 243 ~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 243 VMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp THHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 5566666666665 56777777777766642111 112235678888999989999999999999999865432 111
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN 225 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 225 (458)
.......++.+...+ .++++.++..+++++..++..... ......++|.+..++++++++++..++.++..+.....
T Consensus 319 ~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 319 NVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp HHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred hHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence 112234566666666 778899999999999998754211 12245688889999999999999999999888874332
Q ss_pred hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950 226 DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI 305 (458)
Q Consensus 226 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl 305 (458)
.. .....+++.+..++.++++.+|..++.+++.++...... .+...+++.+..++.++ +..+|..|+.+++.+
T Consensus 396 ~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l 468 (588)
T 1b3u_A 396 IR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKL 468 (588)
T ss_dssp HH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH
Confidence 11 122357888999999999999999999999987522111 11224678888889888 889999999999999
Q ss_pred hcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHH
Q 043950 306 TAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCL 384 (458)
Q Consensus 306 ~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~ 384 (458)
+.. .++ .....++|.+..++.+++..+|..++++++.++...+.+ .....+++.|..++++++++|+..++
T Consensus 469 ~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~ 540 (588)
T 1b3u_A 469 VEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVA 540 (588)
T ss_dssp HHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHH
Confidence 862 222 122358888988888889999999999999997642211 12345788999999999999999999
Q ss_pred HHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950 385 EGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 385 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 446 (458)
+++..++...... +. ....+..|..+.++++++|+..|...+..+-
T Consensus 541 ~~l~~l~~~~~~~------------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 541 KSLQKIGPILDNS------------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHGGGSCHH------------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhchh------------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 9999998653221 11 1234667777889999999999999988764
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.81 E-value=3.2e-18 Score=168.90 Aligned_cols=382 Identities=12% Similarity=0.074 Sum_probs=285.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
..+|.+.++++++++.+|..|+.+|..++...+. ......++|.+..++++++ +.+|..|+.+|+.++...+..
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~- 237 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE- 237 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH-
Confidence 3466777777888999999999999999765321 1223467889999998888 899999999999987632221
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
.....+++.+..++.+++..+|..++.+|+.++...+. .......++.++..+ .++++.++..+++++..++..
T Consensus 238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHH
Confidence 12234688899999999999999999999999753221 112234677888888 678889999999999999876
Q ss_pred CCCCCh--hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 183 KPQPPF--DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 183 ~~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
.+.... .....++|.+..++++.++.++..++++++.++..-... .....+++.+..+++++++.+|..++.+++
T Consensus 312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~ 388 (588)
T 1b3u_A 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 533221 345788899999999999999999999999987432211 122347889999999988999999999998
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHH
Q 043950 261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKE 339 (458)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~ 339 (458)
.++...... .....+++.+..++.++ ++.+|..++.+++.++.. .++ .....+++.+...+.+.+..+|..
T Consensus 389 ~l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 389 CVNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp HHHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHH
Confidence 887533211 11235688888888887 899999999999998751 111 111236788888899989999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcch
Q 043950 340 AALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEG 419 (458)
Q Consensus 340 a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (458)
|+.+++.++.....+. ....+++.|..++.+++..++..+++++..+....... .+. ...
T Consensus 461 a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~~-----~~~ 520 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------ITT-----KHM 520 (588)
T ss_dssp HHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HHH-----HHT
T ss_pred HHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HHH-----HHH
Confidence 9999999986533332 12357888888888899999999999999998753321 011 234
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950 420 FKKIEGLKSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 420 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 447 (458)
+..+..+.++++++|+..+.+.+..++.
T Consensus 521 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 521 LPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 6778888889999999999999988764
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.81 E-value=1.2e-18 Score=179.13 Aligned_cols=358 Identities=13% Similarity=0.102 Sum_probs=259.5
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
...-+.+++.+.++++.+|..++.++..++..+....+ .++++.|++.+.+++ +.+++.++.+|+.++...+..
T Consensus 89 ~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 89 DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 34456778888888999999999999999876422222 257899999999988 899999999999998743332
Q ss_pred HHHHH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950 102 TNVVI----DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS 177 (458)
Q Consensus 102 ~~~~~----~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~ 177 (458)
...-. -..+++.+++++.++++.+|..|++++.++....+..... .-.+.++.++..+ .++++.++..+++++.
T Consensus 163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~ 240 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALV 240 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHH
T ss_pred hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 11100 1135677778888899999999999999887654321100 0113566677766 6788999999999999
Q ss_pred HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHH---hCcHHHHHHHh----------
Q 043950 178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIE---AGVCRRLVELL---------- 244 (458)
Q Consensus 178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~i~~L~~ll---------- 244 (458)
.++...+........++++.+...+.+.++.++..++.++..++..... .. ... ..+++.++..+
T Consensus 241 ~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~-~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC-KD-VLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH-HH-HHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH-HH-HHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 9998654332333467888888899999999999999999999865421 11 111 14567777776
Q ss_pred -CC-----------CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950 245 -GH-----------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ 312 (458)
Q Consensus 245 -~~-----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 312 (458)
.+ .++.++..|..+++.++...++.. + ..+++.+...+.++ ++.+|..|++++++++.+..+.
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~---~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDEL---L-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HC------------CCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHH
T ss_pred cCCcccccccccccccchHHHHHHHHHHHHHHhccHHH---H-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHH
Confidence 33 345678899999999986444321 1 24678888888888 9999999999999999877665
Q ss_pred HHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950 313 IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 313 ~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~ 392 (458)
..... .++++.++..+.++++.+|..+++++++++.......... .-.++++.|+..+.++++.++..+++++.++++
T Consensus 394 ~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 394 MIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 44333 3578999999999999999999999999986311100000 112357778888888899999999999999987
Q ss_pred hchh
Q 043950 393 VGEA 396 (458)
Q Consensus 393 ~~~~ 396 (458)
....
T Consensus 472 ~~~~ 475 (852)
T 4fdd_A 472 EACT 475 (852)
T ss_dssp HHGG
T ss_pred HhhH
Confidence 6543
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=7.3e-18 Score=173.19 Aligned_cols=393 Identities=13% Similarity=0.100 Sum_probs=275.2
Q ss_pred HHHHHhh---cCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 26 PAMVAGV---WSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 26 ~~l~~~l---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+.+...+ .+.++.+|..|+..|.+..... -.....-....+-+.+++.+.+++ +.+|..++.+++.++......
T Consensus 48 ~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~- 124 (852)
T 4fdd_A 48 NYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ- 124 (852)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc-
Confidence 3444444 4677899999999999887642 111111123345677788888877 899999999999998742110
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh----hhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL----REEALIPLLAQLNEHAKLSMLRIATWTLSK 178 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~ 178 (458)
.-.+.++.|+..+.++++.+++.++.+|+.++.+.+.....-. -...++.++..+ .++++.++..+++++..
T Consensus 125 ---~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~ 200 (852)
T 4fdd_A 125 ---NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQ 200 (852)
T ss_dssp ---TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHT
T ss_pred ---ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 0135689999999999999999999999999865443211000 112455555555 57788999999999998
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 258 (458)
+....+.........+++.+..++.++++.++..+++++..++...++......+ ++++.+...+.+.++.++..|+.+
T Consensus 201 ~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~ 279 (852)
T 4fdd_A 201 FIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEF 279 (852)
T ss_dssp TTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHH
Confidence 8865432222233578888999999999999999999999999766544332232 478888999999999999999999
Q ss_pred HhHhhcCChhhHHHHHh---cCChHHHHHHh-----------cc--C--------ChhhHHHHHHHHHHHhhcCCHHHHH
Q 043950 259 VGNIVMGDDFQTQCIIN---HGAVPCLLALL-----------IH--N--------HKKSIKKVACWTISNITAGNREQIQ 314 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~---~~~~~~l~~ll-----------~~--~--------~~~~v~~~a~~~l~nl~~~~~~~~~ 314 (458)
+..++.... . ...+. ..+++.++..+ .+ + .+..+|+.|+.++..++...++
T Consensus 280 l~~l~~~~~-~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--- 354 (852)
T 4fdd_A 280 WLTLAEQPI-C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--- 354 (852)
T ss_dssp HHHHTTSTT-H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---
T ss_pred HHHHhcchh-H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---
Confidence 999886431 1 12221 13456666665 22 0 1345789999999998853211
Q ss_pred HHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 043950 315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 315 ~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~ 394 (458)
.+.. .+++.+...+.+.+..+|..|++++++++.+.......+ -.++++.+...++++++.|+..++++++++....
T Consensus 355 ~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 355 ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 1122 367788888888899999999999999998654322221 2346889999999999999999999999998764
Q ss_pred hhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950 395 EAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 447 (458)
.... ...+.. +.+..|...+.+++++++..|.+.+.++.+
T Consensus 432 ~~~~--------~~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 432 VSQP--------PDTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHSC--------TTTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ccch--------HHHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4321 111122 235677777778899999999999988764
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.79 E-value=1.8e-15 Score=142.46 Aligned_cols=420 Identities=14% Similarity=0.121 Sum_probs=300.7
Q ss_pred hHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCc----------------cHHHH-HHcCCHHHHHHhhcCCC
Q 043950 19 QTKLEILPAMVAGVWS--DDNSLQLEATTQFRILLSIERSP----------------RIEDV-IQAGVVPRFVEFLMRED 79 (458)
Q Consensus 19 ~~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~-~~~~~i~~L~~ll~~~~ 79 (458)
..-..+++.++..|+. +|.++...++..|.++.+.+..+ ..+.+ .+.+.++.|+.+|++.+
T Consensus 56 ~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d 135 (651)
T 3grl_A 56 EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD 135 (651)
T ss_dssp HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC
T ss_pred HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc
Confidence 3345679999999995 57888889999999887754221 11222 34578999999999888
Q ss_pred CHHHHHHHHHHHHHHcCCChh-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHH
Q 043950 80 YPQLQYEAAWALTNIASGTSM-NTNVVIDH-GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLL 157 (458)
Q Consensus 80 ~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~ 157 (458)
-.+|..++.+|..++...++ ..+.+... ++++.|+.+|.+..+.+|..++..|.+++.++++.++.+.-.|+++.++
T Consensus 136 -f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf 214 (651)
T 3grl_A 136 -FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLL 214 (651)
T ss_dssp -HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHH
Confidence 79999999999999987777 66777754 8999999999999999999999999999999999999999999999999
Q ss_pred HHhcccc---cHHHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhcCCChH------HHHH---HHHHHHHhccC-
Q 043950 158 AQLNEHA---KLSMLRIATWTLSKLCKGKPQPPF-DQVRPALPALAQLIHLDDEE------VLSD---ACWTLSYLSYG- 223 (458)
Q Consensus 158 ~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~------~~~~---~~~~l~~l~~~- 223 (458)
..+...+ ...+...|+.++.+|.+.++..+. ....+++|.+..+++.+++. .... ++.++.-++..
T Consensus 215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN 294 (651)
T ss_dssp HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 9996432 346889999999999998643333 33378899999998754321 2222 55666666643
Q ss_pred -----ChhhHHHHHHhCcHHHHHHHhCCC--CccchhhHHHHHhHhhcCChhhHHHHHhcC---------ChHHHHHHhc
Q 043950 224 -----TNDKIQVVIEAGVCRRLVELLGHP--SPSVLTPALWTVGNIVMGDDFQTQCIINHG---------AVPCLLALLI 287 (458)
Q Consensus 224 -----~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~---------~~~~l~~ll~ 287 (458)
.......+.+.|+++.+++++..+ ...++..|+.+++.+.++++.....+.+.. ++..++.++.
T Consensus 295 ~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~ 374 (651)
T 3grl_A 295 NPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVN 374 (651)
T ss_dssp SCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhc
Confidence 223456688999999999999875 567889999999999999988877766432 3444555566
Q ss_pred cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHc----------CCh---HHHHHHhccCChhhHHHHHHHHHHhhcCCCHH
Q 043950 288 HNHKKSIKKVACWTISNITAGNREQIQAVIDA----------GLI---VPLVNVLQDAEFDIKKEAALAIANATVRGTHE 354 (458)
Q Consensus 288 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~----------~~~---~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 354 (458)
+.....+|.+|+.++..+..++++....+... ..+ ..+...+.+.|+.-.-.|+.++.++... +++
T Consensus 375 ~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~ 453 (651)
T 3grl_A 375 ERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NAT 453 (651)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHH
T ss_pred ccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHH
Confidence 66568999999999999998886554444431 111 1344555555665445588888888875 334
Q ss_pred HHHHHHH--------C---CChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHH
Q 043950 355 QIKYLVR--------E---GCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKK 422 (458)
Q Consensus 355 ~~~~l~~--------~---~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (458)
....+.+ + -.++.+...+. ..++.+...-+-.|...+-..+. ....++.+...+..
T Consensus 454 ~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~ 521 (651)
T 3grl_A 454 QKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPF 521 (651)
T ss_dssp HHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHH
T ss_pred HHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHH
Confidence 3333333 1 12445555554 34566666666666666654443 34677777767888
Q ss_pred HHhhhcC-CC---hHHHHHHHHHHHHhcCCCCCC
Q 043950 423 IEGLKSH-DN---NGIREKAVKILETYWCGRVVG 452 (458)
Q Consensus 423 l~~l~~~-~~---~~v~~~a~~~l~~~~~~~~~~ 452 (458)
|.....+ .+ .-|+-.+.-++--+|+..+.+
T Consensus 522 L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 522 LTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 8866433 22 347888898888887766655
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.77 E-value=9e-16 Score=150.38 Aligned_cols=341 Identities=16% Similarity=0.165 Sum_probs=247.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.++.+++++++++..++..+..++..++... ++.. .-+++.+.+-+++++ +.+|..|+++|+++.. ++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~-----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~ 120 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMA-----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE 120 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHH-----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHH-----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence 4677888888889988888888888775532 1111 235788888899988 8999999999999864 45444
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
.+ ++.+..++.++++.+|..|++++.+++...|+. +.+.+.++.+..++ .++++.++..|+++|..++...
T Consensus 121 ~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 121 YL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred HH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence 33 578999999999999999999999998766553 23345677888888 7889999999999999999876
Q ss_pred CCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950 184 PQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262 (458)
Q Consensus 184 ~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l 262 (458)
+.. ........++.++..+...++..+..++.++..++...+... ..+++.+..++++.++.++..|++++..+
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 533 334446677788888888888899999999988875544322 34678888899999999999999999998
Q ss_pred hcC---ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH-----------------HH-----HHHH
Q 043950 263 VMG---DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE-----------------QI-----QAVI 317 (458)
Q Consensus 263 ~~~---~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-----------------~~-----~~l~ 317 (458)
... +++..+.+. ..+.+.++.++. + ++.+|..|+.+++.++...++ .+ ..+.
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence 742 333333322 245566665553 5 677888888777777641110 00 1111
Q ss_pred ---Hc----CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950 318 ---DA----GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390 (458)
Q Consensus 318 ---~~----~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l 390 (458)
+. .+++.|...+.+.+.+++..++++++.++....... . .+++.|.+++....+.++..++.++..+
T Consensus 344 ~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-E-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-H-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 11 245566677777889999999999999987643222 2 2478888888888888888888888888
Q ss_pred HHhchh
Q 043950 391 LKVGEA 396 (458)
Q Consensus 391 ~~~~~~ 396 (458)
+...+.
T Consensus 418 i~~~p~ 423 (591)
T 2vgl_B 418 FRKYPN 423 (591)
T ss_dssp HHHSCS
T ss_pred HHHCcc
Confidence 765443
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.77 E-value=2.2e-16 Score=148.48 Aligned_cols=327 Identities=15% Similarity=0.132 Sum_probs=253.7
Q ss_pred HhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCC
Q 043950 20 TKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASG 97 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~ 97 (458)
...++++.|...+.+ .-.+-|+.|+..|..++.. .+.-+..++++.|+..|+.. ++.++...++.+|.++...
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 345678999998885 4588999999999999543 22334567899999999764 4478888999999887663
Q ss_pred Chh-----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-hhhHHhhh-CCHHHHH
Q 043950 98 TSM-----------------NTNVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG-CRNLVLRE-EALIPLL 157 (458)
Q Consensus 98 ~~~-----------------~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~-~~l~~l~ 157 (458)
.++ ..+.+. +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+... ++++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 322 222333 457899999999999999999999999999988876 67777744 8999999
Q ss_pred HHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh-hhhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChhhHHHHH
Q 043950 158 AQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV-RPALPALAQLIHLDD----EEVLSDACWTLSYLSYGTNDKIQVVI 232 (458)
Q Consensus 158 ~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~ 232 (458)
..| ++..+.++..++..|..++.+.+..++... +++++.++.++..+. ..+...++.++.++...+..+...+.
T Consensus 173 ~lL-~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 173 DLL-ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp GGG-GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHH-hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999 666788999999999999998766655555 699999999998654 47889999999999999988889899
Q ss_pred HhCcHHHHHHHhCCCCcc------chhh---HHHHHhHhhcCC------hhhHHHHHhcCChHHHHHHhccCC-hhhHHH
Q 043950 233 EAGVCRRLVELLGHPSPS------VLTP---ALWTVGNIVMGD------DFQTQCIINHGAVPCLLALLIHNH-KKSIKK 296 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~~~~------~~~~---a~~~l~~l~~~~------~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~ 296 (458)
+.|.++.|..+++.+++. ...+ ++.++.-++..+ ..+...+.+.|+++.+++++..+. ...++.
T Consensus 252 Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~ 331 (651)
T 3grl_A 252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT 331 (651)
T ss_dssp HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence 999999999999864322 1122 455666665542 245567779999999999988652 457999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHcC---------ChHHHHHHhcc-CChhhHHHHHHHHHHhhcCCC
Q 043950 297 VACWTISNITAGNREQIQAVIDAG---------LIVPLVNVLQD-AEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 297 ~a~~~l~nl~~~~~~~~~~l~~~~---------~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~ 352 (458)
.|..+++.++++++.....+.+.. ++..|+.++.+ ...++|..|+.++..+..+..
T Consensus 332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 999999999999988877777532 23333444443 368899999999999998643
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.74 E-value=3.1e-16 Score=153.62 Aligned_cols=338 Identities=16% Similarity=0.122 Sum_probs=233.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.++.+.+.++++++.++..|+++++++.. .+..+ .+++.+.+++.+++ +.+|..|+.++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 46677778889999999999999888732 33333 24678899999888 99999999999999886665432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
+.+.++.+..+|.++++.++..|+.+|..++...+.........+.+..++..+ .+.++-.+...+.++..++..
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~- 232 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK- 232 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC-
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC-
Confidence 236689999999999999999999999999987764311111223466777777 456777777777777776633
Q ss_pred CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 184 PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG---TNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 184 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
.......+++.+..++++.++.++..+++++..+... +++..+.+. .++.+.|+.++. +++.+|..|+.+++
T Consensus 233 ---~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 233 ---DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ---SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 2234567888888999999999999999999998742 233333222 345566666554 66778888888888
Q ss_pred HhhcCChhhH------------------HHHH-------hc----CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH
Q 043950 261 NIVMGDDFQT------------------QCII-------NH----GAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE 311 (458)
Q Consensus 261 ~l~~~~~~~~------------------~~~~-------~~----~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 311 (458)
.++...+... .... +. .+++.|...+.+. +.++|..+++++++++...+.
T Consensus 308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence 7764322110 1100 11 2455666777777 889999999999999987654
Q ss_pred HHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHH
Q 043950 312 QIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENI 390 (458)
Q Consensus 312 ~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l 390 (458)
... ..++.|++++...+..++..++.++.+++..... .....+..|...++ ..++.++..++|+++.+
T Consensus 387 ~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~------~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 387 SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN------KYESIIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS------SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred HHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 333 2566778888777777777777777777643211 12345566666664 34566666666666665
Q ss_pred HH
Q 043950 391 LK 392 (458)
Q Consensus 391 ~~ 392 (458)
..
T Consensus 456 ~~ 457 (591)
T 2vgl_B 456 AE 457 (591)
T ss_dssp CT
T ss_pred cc
Confidence 43
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.72 E-value=1.2e-15 Score=135.29 Aligned_cols=261 Identities=13% Similarity=0.121 Sum_probs=203.8
Q ss_pred HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 043950 60 EDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139 (458)
Q Consensus 60 ~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 139 (458)
......+.++.|++.|.+++ +.+|..|+++|+++.. + +.++.|..++.++++.+|..++++|+.+...
T Consensus 17 ~~~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~ 84 (280)
T 1oyz_A 17 YNQCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 84 (280)
T ss_dssp HHHHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34456678999999999988 8999999999999874 2 3478899999999999999999999998643
Q ss_pred CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950 140 SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY 219 (458)
Q Consensus 140 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 219 (458)
..... ..++.+...+..++++.++..++++|..+....+ ......++.+...+.++++.++..+++++++
T Consensus 85 ~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 85 KKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp TTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred cccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 32211 1223333333467889999999999999975321 2235778999999999999999999999998
Q ss_pred hccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHH
Q 043950 220 LSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVAC 299 (458)
Q Consensus 220 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~ 299 (458)
+.. .+.++.|+.++.++++.++..|+++|+.+....+ ..++.+..++.++ ++.+|..|+
T Consensus 155 ~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~ 213 (280)
T 1oyz_A 155 IND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAI 213 (280)
T ss_dssp C--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHH
T ss_pred cCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHH
Confidence 753 2478999999999999999999999999853332 3567888999888 899999999
Q ss_pred HHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHH
Q 043950 300 WTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPK 378 (458)
Q Consensus 300 ~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~ 378 (458)
++|+++.. ...++.|+..+.+++ ++..++.+|+.+-. ...++.|..++. .++++
T Consensus 214 ~aL~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~ 268 (280)
T 1oyz_A 214 IGLSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNE 268 (280)
T ss_dssp HHHHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCH
T ss_pred HHHHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcH
Confidence 99999852 247888999998644 89999999999843 135777888875 45677
Q ss_pred HHHHHHHHHH
Q 043950 379 IVTVCLEGLE 388 (458)
Q Consensus 379 v~~~~~~~l~ 388 (458)
++..++..+.
T Consensus 269 ~~~~~~~~l~ 278 (280)
T 1oyz_A 269 IITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 7777777664
No 48
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.69 E-value=1.1e-14 Score=150.33 Aligned_cols=401 Identities=12% Similarity=0.118 Sum_probs=264.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-H
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT-N 103 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~ 103 (458)
++.+.+.+.+.++..+..|+.++..++.+........... .+++.+++.+.+++ +.+|..++++++.++....... .
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 4455566778889999999999999976531122222222 47889999999988 8999999999999886311100 0
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-----CchhhHHhhhCCHHHHHHHhcc-cccHHHHHHHHHHHH
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS-----PGCRNLVLREEALIPLLAQLNE-HAKLSMLRIATWTLS 177 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~l~ 177 (458)
.-.-..+++.++..+.+. +.++..+++++.+++... ......+ ...++.++..+.. +.++.++..++.++.
T Consensus 449 ~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 000113467888888765 899999999999998532 1122222 2346677777742 334678999999999
Q ss_pred HhhcCCCCCChhhhhhhHHHHHHhhcCC---------------ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH
Q 043950 178 KLCKGKPQPPFDQVRPALPALAQLIHLD---------------DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE 242 (458)
Q Consensus 178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~---------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 242 (458)
.+....+.........++|.++..+... ...++..++.++.+++........... ..+++.+..
T Consensus 526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~ 604 (861)
T 2bpt_A 526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFR 604 (861)
T ss_dssp HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHH
Confidence 9987755433444566777777666521 345777889999888854433222122 247788888
Q ss_pred HhCCCCc-cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCC
Q 043950 243 LLGHPSP-SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321 (458)
Q Consensus 243 ll~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 321 (458)
.+.+.+. .++..++.+++.++..........+ ..+++.+...+.++ ++.++..++.+++.++....+...... ..+
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l 681 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM 681 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence 8888766 8999999999999865444333333 24788899999776 888999999999999863322322222 247
Q ss_pred hHHHHHHhccCC--hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC-----------HHHHHHHHHHHH
Q 043950 322 IVPLVNVLQDAE--FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD-----------PKIVTVCLEGLE 388 (458)
Q Consensus 322 ~~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-----------~~v~~~~~~~l~ 388 (458)
++.++..+.+.+ .+++..++.+++.++......+..++- .+++.+...+.... ..++..+++++.
T Consensus 682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~ 759 (861)
T 2bpt_A 682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV 759 (861)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 778888887764 889999999999998754334433332 24666777666421 357888899999
Q ss_pred HHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC----ChHHHHHHHHHHHHhcC
Q 043950 389 NILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD----NNGIREKAVKILETYWC 447 (458)
Q Consensus 389 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~ 447 (458)
.++........ ...++... .++.|.....+. +.+++..|..++..+..
T Consensus 760 ~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 760 GIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 88865331100 01111222 244555554442 78899999988887743
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.68 E-value=4.2e-15 Score=131.78 Aligned_cols=255 Identities=13% Similarity=0.106 Sum_probs=199.8
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
.+.++.+++.|.++++.++..|+++|.++.. .+.++.|++++.+++ +.+|..|+++|+.+... +..
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~ 87 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKC 87 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTT
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-ccc
Confidence 4579999999999999999999999999832 136889999999988 89999999999998753 221
Q ss_pred HHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 102 TNVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 102 ~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
.. .+++.|. .++.++++.+|..++++|+++....+.. ....++.++..+ .++++.++..++++|.++.
T Consensus 88 ~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence 11 1234444 2457789999999999999997543322 123567788888 7889999999999999875
Q ss_pred cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
. ...++.+..++.++++.++..++++++.+....+ ..++.|..++.++++.++..|+++|+
T Consensus 157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4 2478999999999999999999999998853222 35688899999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-CChhhHHH
Q 043950 261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-AEFDIKKE 339 (458)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~ 339 (458)
++. +...++.++..+.++ + ++..|+++|+.+.. ..+++.|..++.+ .+.++...
T Consensus 218 ~~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~ 272 (280)
T 1oyz_A 218 YRK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITS 272 (280)
T ss_dssp HTT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHH
T ss_pred HhC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHH
Confidence 885 235788899999765 3 89999999999853 1478889999865 46777777
Q ss_pred HHHHHH
Q 043950 340 AALAIA 345 (458)
Q Consensus 340 a~~~L~ 345 (458)
++.++.
T Consensus 273 ~~~~l~ 278 (280)
T 1oyz_A 273 AIDKLK 278 (280)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 777664
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.68 E-value=5.5e-15 Score=145.28 Aligned_cols=361 Identities=14% Similarity=0.080 Sum_probs=255.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
-.++.+.+.|+++++.++..|+++|+++.. .+ +. ..+++.+.+++.+++ +.+|..|+.++.++...+++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~~----~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS---SE----MC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---HH----HH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---HH----HH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence 457788888999999999999999999842 11 22 246888899999988 9999999999999988666543
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc--------------cccHHH
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--------------HAKLSM 168 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------------~~~~~~ 168 (458)
. +.++.+..++.+.++.++..|+.+|..++..++.....+ ...++.++..+.+ ..++-.
T Consensus 178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 2 678888999999999999999999999987655432222 2567778877743 246778
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH
Q 043950 169 LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH------LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE 242 (458)
Q Consensus 169 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 242 (458)
+..++.++..++...+ .......+.+..++. +.+..+...+++++..+... +. +. ...+..|..
T Consensus 251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~-~~a~~~L~~ 320 (618)
T 1w63_A 251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LR-VLAINILGR 320 (618)
T ss_dssp HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HH-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HH-HHHHHHHHH
Confidence 8888899999886532 122334444444442 34568888999999887532 21 11 135688889
Q ss_pred HhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCCh
Q 043950 243 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322 (458)
Q Consensus 243 ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 322 (458)
++.++++.++..|+.+|+.++..++... ....+.++.++.++ +..+|..|..++..++... +... ++
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~--nv~~-----iv 387 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGN--NIRG-----MM 387 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSS--STHH-----HH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHcccc--cHHH-----HH
Confidence 9999999999999999999987554322 23567888999988 9999999999999998642 1222 45
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCC
Q 043950 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGS 402 (458)
Q Consensus 323 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 402 (458)
+.+...+.+.+.+++..++.+++.++....+....+ ++.|++++......+...++..+..++...++.
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~------v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l----- 456 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWH------IDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM----- 456 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHH------HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-----
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHH------HHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-----
Confidence 678888888899999999999999987543222222 566777777665555555666666666654432
Q ss_pred CCCchhHHHHHHHhcchHHHHHhhhc--CCChHHHHHHHHHHHHhc
Q 043950 403 TIGDVNQYARLVEEDEGFKKIEGLKS--HDNNGIREKAVKILETYW 446 (458)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~ 446 (458)
... ++..|..+.. ...+.+...+.|++..|-
T Consensus 457 --------~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~ 489 (618)
T 1w63_A 457 --------HAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYG 489 (618)
T ss_dssp --------HHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHH
T ss_pred --------HHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhH
Confidence 111 1233333322 133444557888888885
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.66 E-value=1.4e-14 Score=149.37 Aligned_cols=356 Identities=13% Similarity=0.187 Sum_probs=245.0
Q ss_pred ccHHHHHHhhcC-------CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 043950 23 EILPAMVAGVWS-------DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIA 95 (458)
Q Consensus 23 ~~i~~l~~~l~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~ 95 (458)
..+|.+++.+.. ++..++..|..+|..++...+..... .+++.+.+.+.+++ ...|..|+++++.++
T Consensus 324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~-----~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE-----PVLEFVEQNITADN-WRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHcCCCC-hhHHHHHHHHHHHHH
Confidence 457788888874 23678899999998887643111111 35667777778877 799999999999999
Q ss_pred CCCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch---hhHHhhhCCHHHHHHHhcccccHHHHHH
Q 043950 96 SGTS-MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC---RNLVLREEALIPLLAQLNEHAKLSMLRI 171 (458)
Q Consensus 96 ~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 171 (458)
.+.. +.....+. .+++.++..+.++++.+|..+++++++++...+.. ... -...++.++..+ .+. +.++..
T Consensus 398 ~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~ 472 (861)
T 2bpt_A 398 DGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATN 472 (861)
T ss_dssp SSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHH
T ss_pred cCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHH
Confidence 8543 32222232 46889999999999999999999999998542110 111 123567777777 333 889999
Q ss_pred HHHHHHHhhcCCC----CCChhhhhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC
Q 043950 172 ATWTLSKLCKGKP----QPPFDQVRPALPALAQLIHLDD--EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG 245 (458)
Q Consensus 172 a~~~l~~l~~~~~----~~~~~~~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 245 (458)
++|++.+++.... .........+++.+...+.+.+ +.++..++.+++.++............ .+++.++..+.
T Consensus 473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~ 551 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG 551 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence 9999999987532 2222445778888888888544 789999999999998654433332222 35566665554
Q ss_pred CC---------------CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChh-hHHHHHHHHHHHhhcCC
Q 043950 246 HP---------------SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKK-SIKKVACWTISNITAGN 309 (458)
Q Consensus 246 ~~---------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~v~~~a~~~l~nl~~~~ 309 (458)
.. ...++..++.++++++...+....... ..+++.+...+++. +. .++..++++++.++...
T Consensus 552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASL 629 (861)
T ss_dssp HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHH
Confidence 21 234677889999998865543322222 24677888888877 66 89999999999998632
Q ss_pred HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC--HHHHHHHHHHH
Q 043950 310 REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD--PKIVTVCLEGL 387 (458)
Q Consensus 310 ~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~~~~l 387 (458)
......... .+++.+...+..++++++..++.+++.++.........++ ..+++.+...+.+++ ++++..++.++
T Consensus 630 ~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 630 GKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp GGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred hhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 222222222 2788899999888889999999999999865443333232 235667777777654 78999999999
Q ss_pred HHHHHhch
Q 043950 388 ENILKVGE 395 (458)
Q Consensus 388 ~~l~~~~~ 395 (458)
+.++....
T Consensus 707 ~~l~~~~~ 714 (861)
T 2bpt_A 707 GDIASNIG 714 (861)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHhh
Confidence 99987644
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.65 E-value=2.6e-14 Score=147.68 Aligned_cols=276 Identities=19% Similarity=0.206 Sum_probs=195.1
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 24 ILPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 24 ~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
.++.+.+.+.++ +..++..|+.++..++..-............+++.+.+.+.+++ ++++..++.+|..++...+..
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 466677777776 68999999999999875421110011111235777778777777 899999999999998755554
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC------------------chhhHHh--hhCCHHHHHHHhc
Q 043950 102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP------------------GCRNLVL--REEALIPLLAQLN 161 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------------------~~~~~~~--~~~~l~~l~~~l~ 161 (458)
....+...+++.++..+.+.++.++..++..+.+++.... ....... -...++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 4444444778888888888889999999999988874310 0000100 0234566666664
Q ss_pred c------cccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-hhHHHHHHh
Q 043950 162 E------HAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN-DKIQVVIEA 234 (458)
Q Consensus 162 ~------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~ 234 (458)
. +.+..++..+..++..++...+ ......+++.+...+.+.++.++..++++++.++.... +...... .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 2 2345688888999988876543 23456788888888899999999999999999997654 3333232 3
Q ss_pred CcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhH--HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 235 GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT--QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 235 ~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
.+++.++..+.++++.+|..|++++++++...+... ... -..+++.++..+.+ ++.++..++|++++++.
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999987544321 011 12467778888865 37899999999999985
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.64 E-value=5.6e-15 Score=141.06 Aligned_cols=390 Identities=12% Similarity=0.050 Sum_probs=266.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
+..+++.+.++|..+|..|-..|.++...+ ..+++..|+.++.+++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 445666777889999999999998863310 1245677888887652 479999999999999764321111
Q ss_pred H-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc--cHHHHH
Q 043950 104 V-----V------IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA--KLSMLR 170 (458)
Q Consensus 104 ~-----~------~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~ 170 (458)
. . ....+-..|+..+.+.++.+ ..++.+++.++...... .. -.+.++.++..+ .++ ++.++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~~--w~~ll~~L~~~l-~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-NQ--WPELIPQLVANV-TNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-TC--CTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-cc--cHHHHHHHHHHh-ccCCCCHHHHH
Confidence 0 0 01123356777788777777 88889999987542110 01 134678888888 455 888999
Q ss_pred HHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChhhHH-HHHHhCcHHHHHHHhCC
Q 043950 171 IATWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLD--DEEVLSDACWTLSYLSYGTNDKIQ-VVIEAGVCRRLVELLGH 246 (458)
Q Consensus 171 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~ 246 (458)
.++.++..++... +.........+++.+...+.+. ++.++..++++++++...-..... .....-+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999753 2222334467888899999887 789999999999987643221110 01111246677777888
Q ss_pred CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH---------------
Q 043950 247 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE--------------- 311 (458)
Q Consensus 247 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~--------------- 311 (458)
+++.++..+++++..++...+......+..++++.++..+.+. ++.++..|++++..++.....
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 8899999999999999876654433323226788888888877 889999999999988753110
Q ss_pred ------HHHHHHHcCChHHHHHHhccC-------ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHH
Q 043950 312 ------QIQAVIDAGLIVPLVNVLQDA-------EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK 378 (458)
Q Consensus 312 ------~~~~l~~~~~~~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 378 (458)
...... ..++|.++..+... +..++..|..+|..++......... .+++.+...+.++++.
T Consensus 308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR 381 (462)
T ss_dssp SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence 011011 23566677777432 3578999999999998654322222 3567778888899999
Q ss_pred HHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950 379 IVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG 448 (458)
Q Consensus 379 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 448 (458)
++..++.+++.+........ +... -...+..+..+++++++.|+..|.+.+.++...
T Consensus 382 ~r~aal~~l~~l~~~~~~~~-----------~~~~--l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQ-----------LKPL--VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTT-----------TCTT--TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHH-----------HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999986322110 0111 134578888888999999999999999998654
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.63 E-value=4.9e-14 Score=145.64 Aligned_cols=407 Identities=15% Similarity=0.183 Sum_probs=258.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT- 102 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~- 102 (458)
.++.+.+.++++++.++..|++++..++.+...+..... -..+++.++..+.+++ +.+|..|++++++++...+...
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence 355566777788999999999999999765421222222 2357899999999988 8999999999999987433210
Q ss_pred -HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC---------------chhhHHhhhCCHHHHHHHhcccc--
Q 043950 103 -NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP---------------GCRNLVLREEALIPLLAQLNEHA-- 164 (458)
Q Consensus 103 -~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~l~~l~~~l~~~~-- 164 (458)
.... ..+++.++..+.+. +.++..+++++.+++.... .....+ ...++.++..+....
T Consensus 445 ~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 445 NDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH 520 (876)
T ss_dssp STTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred cHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence 0001 14467888888765 8999999999999984311 111111 235666666664322
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-----------CC----hHHHHHHHHHHHHhccCCh-hhH
Q 043950 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL-----------DD----EEVLSDACWTLSYLSYGTN-DKI 228 (458)
Q Consensus 165 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----------~~----~~~~~~~~~~l~~l~~~~~-~~~ 228 (458)
+..++..+..++..+....+.........+++.+...+.. .| ++++..++.++..++.... ...
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 3567788889999888776544445556777777666542 22 4567788899999886554 333
Q ss_pred HHHHHhCcHHHHHHHhCCCC--ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950 229 QVVIEAGVCRRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 229 ~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
.... ..+++.++.++++.. ..++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++
T Consensus 601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 3222 357888889998764 468899999999998643332222222 367888888876536789999999999998
Q ss_pred cCCHHHHHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC----C----
Q 043950 307 AGNREQIQAVIDAGLIVPLVNVLQD--AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV----D---- 376 (458)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~----~---- 376 (458)
......+...+. .+++.++..+.+ .+.+++..+++++++++.....++..++ ..+++.+...+..+ +
T Consensus 679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~ 755 (876)
T 1qgr_A 679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV 755 (876)
T ss_dssp HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence 632222333232 478888888877 3678999999999999763222322222 12455555555433 1
Q ss_pred ---HHHHHHHHHHHHHHHHhchhhcc-cCCCCCchhHHHHHHHhcchHHHHHhhhcCC--ChHHHHHHHHHHHHhc
Q 043950 377 ---PKIVTVCLEGLENILKVGEAEKN-TGSTIGDVNQYARLVEEDEGFKKIEGLKSHD--NNGIREKAVKILETYW 446 (458)
Q Consensus 377 ---~~v~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~ 446 (458)
..++..++.++..++........ .........+|...+ +..+..+..++ ++.++..|...+..+.
T Consensus 756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 826 (876)
T 1qgr_A 756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 26788888888888775432100 000000112222322 34444444555 6789888888877654
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.63 E-value=2.8e-15 Score=143.16 Aligned_cols=363 Identities=13% Similarity=0.077 Sum_probs=245.9
Q ss_pred hccHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCcc----------HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 043950 22 LEILPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPR----------IEDVIQAGVVPRFVEFLMREDYPQLQYEAAW 89 (458)
Q Consensus 22 ~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~ 89 (458)
.+.+..+...+.++ ++.+|..|+..|.++........ ...-....+-..|++.+.+++ +.+ ..++.
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~ 111 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQ 111 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHH
Confidence 34455666777654 68999999999999976421000 000012234556788888877 677 88999
Q ss_pred HHHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccc-c
Q 043950 90 ALTNIASGTSMNTNVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHA-K 165 (458)
Q Consensus 90 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~-~ 165 (458)
+++.++....... .-.+.++.|+..+.++ ++.+++.++.+|+.++... +..-... -...++.++..+.+.. +
T Consensus 112 ~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~ 187 (462)
T 1ibr_B 112 CVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPS 187 (462)
T ss_dssp HHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCC
Confidence 9999887321100 0136789999999888 8999999999999998643 2211111 1235667777774443 7
Q ss_pred HHHHHHHHHHHHHhhcCCC-C-CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH
Q 043950 166 LSMLRIATWTLSKLCKGKP-Q-PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL 243 (458)
Q Consensus 166 ~~~~~~a~~~l~~l~~~~~-~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l 243 (458)
+.++..+++++.++..... . ........+++.+...+.+.++.++..++.++..++..........+..++++.++..
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (462)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998764321 0 0111113357777778888899999999999999986554333222322678888888
Q ss_pred hCCCCccchhhHHHHHhHhhcCChh---------------------hHHHHHhcCChHHHHHHhccC------ChhhHHH
Q 043950 244 LGHPSPSVLTPALWTVGNIVMGDDF---------------------QTQCIINHGAVPCLLALLIHN------HKKSIKK 296 (458)
Q Consensus 244 l~~~~~~~~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~~~~l~~ll~~~------~~~~v~~ 296 (458)
+++.++.++..++.++..++..... ...... ..+++.++..+... .+..+|.
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~ 346 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCK 346 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHH
Confidence 8888889999999999888753210 001001 23566666666432 1457999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 043950 297 VACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD 376 (458)
Q Consensus 297 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 376 (458)
.|+.++..++...++ .+. ..+++.+...+.+.+..+|..|+.+++.++.+...+...... ..+++.+...+.+++
T Consensus 347 ~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~ 421 (462)
T 1ibr_B 347 AAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS 421 (462)
T ss_dssp HHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCC
Confidence 999999999863222 111 236777888888889999999999999999865422111111 457889999999999
Q ss_pred HHHHHHHHHHHHHHHHhchh
Q 043950 377 PKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 377 ~~v~~~~~~~l~~l~~~~~~ 396 (458)
+.|+..++++|.++......
T Consensus 422 ~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 422 VVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999986544
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.61 E-value=1.5e-13 Score=146.66 Aligned_cols=408 Identities=11% Similarity=0.100 Sum_probs=268.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.++.+++.+.++|+.+|..|...|.+....... ....-....+++.+++.+.+++ +.+|..|+.+|+.++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 477889999999999999999999987654311 1111112246788999998877 899999999999998754431
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh-----hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR-----NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK 178 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~ 178 (458)
.. ..+++.++..+.++++.+|..++.+|+.++...+... ..-.-...++.++..+.+++++.++..++.++..
T Consensus 83 -~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 -QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp -HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred -HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 11 1347888888888888999999999999985433210 0011234678888888445778899999999999
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHH
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALW 257 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~ 257 (458)
++...+..-......+++.+...+.++++.++..++.+++.++...... +. ..+++.++..+.+. +..++..++.
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence 9865333222345778888889999999999999999999998654422 12 24677777777654 3578889999
Q ss_pred HHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-------
Q 043950 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ------- 330 (458)
Q Consensus 258 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~------- 330 (458)
+++.++...+...... -..+++.++..+.++ ++.+|..+.+++..++...++.+..... .+++.++..+.
T Consensus 237 ~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence 9999987554332221 246889999999887 8899999999999998632221111111 12333333221
Q ss_pred ------------------------------cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHH
Q 043950 331 ------------------------------DAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIV 380 (458)
Q Consensus 331 ------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 380 (458)
+...++|..|+.++..++.........+ -..+++.+...+.+.++.++
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr 391 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENVK 391 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHHH
Confidence 0123578899999999987433222222 24567888888888889999
Q ss_pred HHHHHHHHHHHHhchhhcc-c-CC-CC---CchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950 381 TVCLEGLENILKVGEAEKN-T-GS-TI---GDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 381 ~~~~~~l~~l~~~~~~~~~-~-~~-~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 447 (458)
..++.++..++........ . +. .. .+.......+ -...++.+.....++++.++..+...+..+..
T Consensus 392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQ-VPNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHH-TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHH-hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 9999999888764321000 0 00 00 0000001111 11234555555778888888877777776644
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.60 E-value=9.2e-14 Score=136.60 Aligned_cols=327 Identities=13% Similarity=0.066 Sum_probs=235.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.++.+.+++.+.++.++..|+.++.++.... ++.. .++++.+.+++.+.+ +.++..|+.+|..++..+++...
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHH
Confidence 3788889999999999999999999997753 3322 267888899999888 89999999999999986554322
Q ss_pred HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-----cc
Q 043950 104 VVIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-----EH 163 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-----~~ 163 (458)
.+. ..++.++.+|.+ .++-.+..++.+|+.++..++...+ ...+.+...+. .+
T Consensus 216 ~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 216 HFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKN 288 (618)
T ss_dssp HHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSST
T ss_pred HHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccc
Confidence 222 567878776652 4788888899999999876654322 23344444432 12
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH
Q 043950 164 AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL 243 (458)
Q Consensus 164 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l 243 (458)
.+..+...+++++..+... ......+++.+..++.+++++++..++.++..++...+. .+ ......++.+
T Consensus 289 ~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~ 358 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDC 358 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHH
Confidence 3457888888888886432 223346778888999999999999999999999854432 22 2356788999
Q ss_pred hCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChH
Q 043950 244 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIV 323 (458)
Q Consensus 244 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~ 323 (458)
+.+++..+|..|+.++..++.... ... +++.+...+.+. +.++|..++.+++.++...+..... .++
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~-----~v~ 425 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRW-----HID 425 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHH-----HHH
T ss_pred ccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHH-----HHH
Confidence 999999999999999999986432 222 357788888877 8999999999999999742222221 367
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 043950 324 PLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 324 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~ 393 (458)
.+++++......++..++..+..+..... +.... .+..|...+.. .++.+...++|+++.+...
T Consensus 426 ~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 426 TIMRVLTTAGSYVRDDAVPNLIQLITNSV-EMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp HHHHHHHHTGGGSCSSHHHHHHHHHHHSC-STHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhcCh-hHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence 78888887777777778888888876433 22222 24556666653 3445556789999988754
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.52 E-value=4.9e-13 Score=142.80 Aligned_cols=396 Identities=12% Similarity=0.108 Sum_probs=250.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCcc----HHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCCh
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPR----IEDVIQAGVVPRFVEFLMR-EDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~-~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
++.+++.+.++++.+|..|+.+|..++....... ...-.-..++|.|++.+.+ ++ ..++..|+.++..++...+
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhH
Confidence 4555555566666666666666666654431110 0111123478888888884 55 8999999999999884221
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950 100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l 179 (458)
...... -..+++.+...+.++++.+|..++.+++.++...+.. + -...++.++..+....+...+..++.++..+
T Consensus 167 ~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 167 GLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp SSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 111000 0234677788888888999999999999998654331 1 1235788888885554455677788888888
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-------------
Q 043950 180 CKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH------------- 246 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------- 246 (458)
+...+..-......++|.+...+.+.+++++..++.++..++........... ..+++.+++.+..
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~ 320 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDE 320 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCccccccc
Confidence 76543322234478899999999999999999999999988865433222222 2345555554431
Q ss_pred ------------------------CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950 247 ------------------------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTI 302 (458)
Q Consensus 247 ------------------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l 302 (458)
..+.+|..|+.++..++...+......+ ..+++.++..+.+. +..+|..++.++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l 398 (1230)
T 1u6g_C 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAY 398 (1230)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHH
T ss_pred ccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence 1234688899999998875544334343 46788888888777 889999999988
Q ss_pred HHhhc--CC-----------------HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 043950 303 SNITA--GN-----------------REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREG 363 (458)
Q Consensus 303 ~nl~~--~~-----------------~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~ 363 (458)
..++. +. .......+ ..+++.+...+.++++.+|..++.+++.++.........++ ..
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ 475 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PV 475 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HH
Confidence 88764 11 11112222 23566677778888999999999999998865321111111 13
Q ss_pred ChHHHHhhccCCC--HHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHH
Q 043950 364 CIKPLCDLLLCVD--PKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441 (458)
Q Consensus 364 ~l~~L~~ll~~~~--~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~ 441 (458)
+++.+...+.+++ ..++..++..+..++...... .+...+ ...+..+.....+.+..++..|...
T Consensus 476 ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~-----------~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~ 542 (1230)
T 1u6g_C 476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ-----------VFHPHV--QALVPPVVACVGDPFYKITSEALLV 542 (1230)
T ss_dssp HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG-----------GGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH-----------HHHhHH--HHHHHHHHHHHcccchHHHHHHHHH
Confidence 5677788887765 488888888888887632221 112222 1235555555666667666555555
Q ss_pred HHHh
Q 043950 442 LETY 445 (458)
Q Consensus 442 l~~~ 445 (458)
+..+
T Consensus 543 l~~l 546 (1230)
T 1u6g_C 543 TQQL 546 (1230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.49 E-value=2.9e-12 Score=108.27 Aligned_cols=191 Identities=20% Similarity=0.167 Sum_probs=158.8
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
...+.++.+++.|+++++.++..|+..|..+.. .+.++.|++++.+++ +.++..|+++|+.+..
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~--- 79 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD--- 79 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC---
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC---
Confidence 345679999999999999999999999998732 246899999999988 8999999999999875
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950 100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l 179 (458)
.+.++.|+.++.++++.+|..++++|+.+.. .+.++.++..+ .++++.++..++++|..+
T Consensus 80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHc
Confidence 2458999999999999999999999999842 23678888888 788999999999999998
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHH
Q 043950 180 CKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTV 259 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l 259 (458)
.. ...++.+..++.++++.++..++.+|+.+.. ...++.|..++.++++.++..|..+|
T Consensus 140 ~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 140 GD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp CC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 43 3578899999999999999999999999842 23567788888889999999999999
Q ss_pred hHhhcCCh
Q 043950 260 GNIVMGDD 267 (458)
Q Consensus 260 ~~l~~~~~ 267 (458)
.++.....
T Consensus 199 ~~~~~~~~ 206 (211)
T 3ltm_A 199 ETHKSFNH 206 (211)
T ss_dssp HC------
T ss_pred HhcCCCCC
Confidence 99876443
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.48 E-value=2.2e-12 Score=108.06 Aligned_cols=186 Identities=20% Similarity=0.180 Sum_probs=158.0
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950 21 KLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 21 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
..+..+.+++.|+++++.++..|+..|..+.. .+.++.|++++.+++ +.++..|+++|+.+...
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~~--- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGDE--- 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCCG---
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCCH---
Confidence 34668999999999999999999999998732 146899999999888 89999999999998651
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
..++.|+.++.++++.+|..++++|+.+.. ...++.++..+ .++++.++..++++|..+.
T Consensus 76 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 76 --------RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhC
Confidence 458999999999999999999999999842 13577888888 7889999999999999985
Q ss_pred cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
. ...++.+..++.++++.++..++++|+.+. . ...++.|..++.++++.++..|..+|.
T Consensus 136 ~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--G---------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--S---------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 467889999999999999999999999983 1 135678888888889999999999998
Q ss_pred Hhh
Q 043950 261 NIV 263 (458)
Q Consensus 261 ~l~ 263 (458)
++.
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 874
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.47 E-value=4.1e-12 Score=107.31 Aligned_cols=187 Identities=21% Similarity=0.186 Sum_probs=157.5
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh
Q 043950 65 AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144 (458)
Q Consensus 65 ~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 144 (458)
.+.++.|++.|.+++ +.+|..|++.|+.+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 357899999999888 8999999999998865 2568999999999999999999999999842
Q ss_pred hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 043950 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT 224 (458)
Q Consensus 145 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 224 (458)
.+.++.++..+ .++++.++..++++|..+.. ...++.+..++.++++.++..++.+|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23678888888 78889999999999999853 3578999999999999999999999999842
Q ss_pred hhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950 225 NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN 304 (458)
Q Consensus 225 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n 304 (458)
...++.|..++.++++.++..++.+|+.+.. ...++.|..++.++ ++.||..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2467889999999999999999999999842 23577788899888 89999999999999
Q ss_pred hhcC
Q 043950 305 ITAG 308 (458)
Q Consensus 305 l~~~ 308 (458)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9753
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.45 E-value=7.5e-11 Score=115.53 Aligned_cols=291 Identities=14% Similarity=0.108 Sum_probs=174.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
+.+..++++.+++...+..+.-++..++..+ ++.. . =+++.+.+=+++++ +.++..|+++|+++.. ++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~---~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELI---R--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHH---H--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHH---H--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence 4677888899999999999988888886542 2211 1 14677888888998 8999999999999965 55443
Q ss_pred HHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 104 VVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
.+++.+.+.+ .+.++.+|..|+.++.++....|+. +...+.++.+..++ .+.++.++..++.++..++.
T Consensus 146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence 3478899999 8899999999999999998765542 22246788888888 78899999999999999987
Q ss_pred CCCCCChhhhhhhHHHHH----HhhcCC-------------ChHHHHHHHHHHHHhccCC-hhhHHHHHHhCcHHHHHHH
Q 043950 182 GKPQPPFDQVRPALPALA----QLIHLD-------------DEEVLSDACWTLSYLSYGT-NDKIQVVIEAGVCRRLVEL 243 (458)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~----~ll~~~-------------~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~l 243 (458)
..+. .....+|.++ .++..+ ++-.+..++..+..++... ++....+.+ ++..++..
T Consensus 217 ~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~ 290 (621)
T 2vgl_A 217 KNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNK 290 (621)
T ss_dssp HCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHH
T ss_pred hChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHh
Confidence 6432 1223333333 333221 4667777777777776432 222221111 22222221
Q ss_pred hC-CC--------C--ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950 244 LG-HP--------S--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ 312 (458)
Q Consensus 244 l~-~~--------~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 312 (458)
+. .+ + ..+...|..++..+.. .++... .++..+..++.++ ++.+|..|...+..++...+.
T Consensus 291 ~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~- 362 (621)
T 2vgl_A 291 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS- 362 (621)
T ss_dssp HHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-
T ss_pred hccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-
Confidence 11 01 1 1344444555544431 222111 1344455555555 555555555555555543221
Q ss_pred HHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHhh
Q 043950 313 IQAVIDAGLIVPLVNVLQ-DAEFDIKKEAALAIANAT 348 (458)
Q Consensus 313 ~~~l~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~ 348 (458)
. ..+. .....++..+. ++|..++..++..+..++
T Consensus 363 ~-~~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 363 H-EAVK-THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp H-HHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred H-HHHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 0 1112 13444455555 555555555555555554
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.45 E-value=7.7e-12 Score=104.74 Aligned_cols=184 Identities=22% Similarity=0.197 Sum_probs=157.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
+..+.++++|.+++ +.+|..|++.|+.+... +.++.|+.++.++++.+|..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCCh-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 46789999999999 89999999999988751 458999999999999999999999998842
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN 225 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 225 (458)
.+.++.++..+ .++++.++..++++|..+.. ...++.+..++.++++.++..++++++.+..
T Consensus 75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 13678888888 67899999999999999753 3578889999999999999999999998852
Q ss_pred hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950 226 DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI 305 (458)
Q Consensus 226 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl 305 (458)
.+.++.|..++.++++.++..|+++|+.+.. + ..++.|..++.++ ++.+|..|..+|..+
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999832 2 3577888889888 999999999999987
Q ss_pred h
Q 043950 306 T 306 (458)
Q Consensus 306 ~ 306 (458)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.35 E-value=1.7e-10 Score=113.07 Aligned_cols=336 Identities=14% Similarity=0.081 Sum_probs=221.7
Q ss_pred HHHHHHhh--cCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 25 LPAMVAGV--WSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 25 i~~l~~~l--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+|.+.+++ .+.++.++..|+.++.++.... ++... ..++++.+.++|.+++ +.++..|+.++..++..+++..
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~---~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVP---MGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCC---CCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcC---chhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHH
Confidence 55666777 6677888888888887776543 22111 1478999999998888 8999999999999988655421
Q ss_pred HHHHhCCChHHHHHhhCCC-------------CHHHHHHHHHHHHHhhcC-CCchhhHHhhhCCHHHHHHHhcc------
Q 043950 103 NVVIDHGAVPIFVKLLASP-------------SDDVREQAVWALGNVAAD-SPGCRNLVLREEALIPLLAQLNE------ 162 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~-------------~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~------ 162 (458)
...+. ..+..|.+++..+ ++-.+...+..|..++.. ++..++.+.+ .+..++..+.+
T Consensus 223 ~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 223 KTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKK 299 (621)
T ss_dssp TTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSS
T ss_pred HHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccc
Confidence 11110 1223333443221 577888888888888753 2333333322 34444443311
Q ss_pred --cc--cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHH
Q 043950 163 --HA--KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR 238 (458)
Q Consensus 163 --~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~ 238 (458)
+. ...+...+..++..+. ........++..+..++.+++++++..++..+..++...+. .. .+ .....
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~-----~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~ 371 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHD-----SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIE 371 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHH
T ss_pred ccccchHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHH
Confidence 11 2367777778887774 23345567888899999999999999999999999866532 12 22 24567
Q ss_pred HHHHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 043950 239 RLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI 317 (458)
Q Consensus 239 ~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~ 317 (458)
.++.++. +++..++..++.++..++. +.... .++..+...+... +.+++..++..++.++...+....
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~-----~Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~k~~~~~~--- 440 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMCD--RSNAQ-----QIVAEMLSYLETA-DYSIREEIVLKVAILAEKYAVDYT--- 440 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCSSTH---
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHH-----HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCcHH---
Confidence 8888898 8899999999999999974 44443 3466788888887 889999999999998741111111
Q ss_pred HcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC--HHHHHHHHHHHHHHHHhch
Q 043950 318 DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD--PKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 318 ~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~~~~l~~l~~~~~ 395 (458)
-.+..|++++......+..++...+..++...+ +...+ .+..+++.+..+. ..+...+.|+++.+....+
T Consensus 441 --~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~-~~~~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~ 512 (621)
T 2vgl_A 441 --WYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD-DVQGY-----AAKTVFEALQAPACHENLVKVGGYILGEFGNLIA 512 (621)
T ss_dssp --HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC-SCHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHH
T ss_pred --HHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh-hHHHH-----HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhc
Confidence 146677777776655677777777777765432 22222 2445666666543 4577778899988865443
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.16 E-value=7.8e-09 Score=79.94 Aligned_cols=218 Identities=14% Similarity=0.167 Sum_probs=175.4
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC
Q 043950 107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP 186 (458)
Q Consensus 107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 186 (458)
+..++..++.+|.+.--.++.+|+..+.+++...|+..+- .+..|+.++..+.....-.....+++.++...
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--- 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--- 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence 3456889999998888899999999999999888775443 45678888877887777778888999988753
Q ss_pred ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCC
Q 043950 187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGD 266 (458)
Q Consensus 187 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 266 (458)
...+.+++|.+..-..-.|+.++.....+|..++..++.... +++.-+..++.+++..-+..|+.+++.+....
T Consensus 102 -Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 102 -PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp -HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred -HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 456788999999999999999999999999999977775443 56788899999988777888888888886655
Q ss_pred hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHH
Q 043950 267 DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346 (458)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~ 346 (458)
..+. ...+|.+..+|.+. +.-||..|..+|.+++..++..+.. +..-+.-+.+.+..++...-.+|+.
T Consensus 176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4332 36799999999999 9999999999999999988774432 2234445677788888888888888
Q ss_pred hhcC
Q 043950 347 ATVR 350 (458)
Q Consensus 347 l~~~ 350 (458)
++.-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8653
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.10 E-value=2.7e-09 Score=106.00 Aligned_cols=219 Identities=15% Similarity=0.125 Sum_probs=156.2
Q ss_pred HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhcCC
Q 043950 62 VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAADS 140 (458)
Q Consensus 62 ~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~ 140 (458)
..+..+.| +++.|++++ ++.|..|+++|++++. ++..+..+...+++..+ ..+|.+++.++|..|+++|.||+.+.
T Consensus 31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 34445555 557789988 8999999999999998 78889989988888765 55788899999999999999999653
Q ss_pred -CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950 141 -PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY 219 (458)
Q Consensus 141 -~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 219 (458)
+.....+...|++++|...+.. ....+........... ......+ ..+...++.++++
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~ 166 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGL 166 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHHh---------hHHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHH
Confidence 5566778888999999988832 1122222221110000 0111111 2244567778888
Q ss_pred hccCChhhHHHHHHhCcHHHHHHHhCCC---CccchhhHHHHHhHhhcCChhhHHHHHhcCChH---HHHHHhccCChhh
Q 043950 220 LSYGTNDKIQVVIEAGVCRRLVELLGHP---SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVP---CLLALLIHNHKKS 293 (458)
Q Consensus 220 l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~---~l~~ll~~~~~~~ 293 (458)
++..+.+....+...+.++.++..|.+. ..+++..|+.+|..++..++...+.+.+.+... .+..+.. . +..
T Consensus 167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~ 244 (684)
T 4gmo_A 167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDP 244 (684)
T ss_dssp HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCT
T ss_pred HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcH
Confidence 8887777777788889999999888542 346889999999999999998888888766433 3333333 3 334
Q ss_pred HHHHHHHHHHHhh
Q 043950 294 IKKVACWTISNIT 306 (458)
Q Consensus 294 v~~~a~~~l~nl~ 306 (458)
.+..+++.+.|+.
T Consensus 245 ~~~la~giL~Ni~ 257 (684)
T 4gmo_A 245 RAVMACGVLHNVF 257 (684)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh
Confidence 5778889999874
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.10 E-value=1.4e-08 Score=100.88 Aligned_cols=308 Identities=14% Similarity=0.127 Sum_probs=207.5
Q ss_pred cHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 043950 24 ILPAMVAGVW---SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-------YPQLQYEAAWALTN 93 (458)
Q Consensus 24 ~i~~l~~~l~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------~~~i~~~a~~~L~~ 93 (458)
++..+-+.|. ++++.++..|+.+|.-+..+.. . .++..|...+.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-R--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-H--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-H--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4666777776 6778899999999998866542 1 14566777776543 25788889999998
Q ss_pred HcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950 94 IASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT 173 (458)
Q Consensus 94 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~ 173 (458)
...++.. . .+++.|..++.+.+..+++.++.+|+-+..+.... .++..|+..+....+..+++.+.
T Consensus 464 a~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHH
Confidence 7664321 1 23677888888777788888999999875443321 13566777665566778999999
Q ss_pred HHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH-hCCCCccc
Q 043950 174 WTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL-LGHPSPSV 251 (458)
Q Consensus 174 ~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~ 251 (458)
.+|..+.... ...++.+++.+. +.++-++..++.+++.-..+.... . .++.|+.. ..+.+..+
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-~------aIq~LL~~~~~d~~d~V 594 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-S------AVKRLLHVAVSDSNDDV 594 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-H------HHHHHHHHHHHCSCHHH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-H------HHHHHHHHhccCCcHHH
Confidence 9999886653 345566666555 577888888877776433222211 1 23333333 34567789
Q ss_pred hhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc
Q 043950 252 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD 331 (458)
Q Consensus 252 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~ 331 (458)
|..|+..|+.+..+.++ .++.++.+|.+..++.+|..|+++++.++.+++.. .++..|..+..+
T Consensus 595 RraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D 658 (963)
T 4ady_A 595 RRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKD 658 (963)
T ss_dssp HHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccC
Confidence 99999999998776652 35566665555449999999999999998765321 257778888899
Q ss_pred CChhhHHHHHHHHHHhhcCCCHH---HHHHHHHCCChHHHHhhcc--CCCHHHHHHHHHHHHHH
Q 043950 332 AEFDIKKEAALAIANATVRGTHE---QIKYLVREGCIKPLCDLLL--CVDPKIVTVCLEGLENI 390 (458)
Q Consensus 332 ~~~~~~~~a~~~L~~l~~~~~~~---~~~~l~~~~~l~~L~~ll~--~~~~~v~~~~~~~l~~l 390 (458)
.+..|+..|+.+|+.+..+.+.. .... .++.|..... ++++..+-.+.-+.+.+
T Consensus 659 ~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 659 PVDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp SSHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 99999999999999998765433 2222 2344555554 34555555555444433
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.06 E-value=7e-08 Score=74.71 Aligned_cols=219 Identities=13% Similarity=0.147 Sum_probs=170.6
Q ss_pred hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhh
Q 043950 149 REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDK 227 (458)
Q Consensus 149 ~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~ 227 (458)
+...+..++..+ ++.--.++.+++..+..++... .......+..++-+++ ++..+.-....++++.++...++.
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~----~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTR----EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHh----HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 445678888888 6666789999999999998764 3455777777777765 566777788889999998777765
Q ss_pred HHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 228 IQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 228 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
.. +++|.+..-..-.++.++.....+|..++..+|.... +++.-+..++.++ +..-|..|...++.+..
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMGE 173 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence 54 4678888888888999999999999999998887654 4567789999988 87778888888887766
Q ss_pred CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHH
Q 043950 308 GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGL 387 (458)
Q Consensus 308 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l 387 (458)
...++.. .++|.|+.+|.+.|.-+|..|..+|.+++.. ++..++. +...+.-+++.++.+...+-.+|
T Consensus 174 n~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred cCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence 5544432 4799999999999999999999999999986 4455554 33455666778888888888999
Q ss_pred HHHHHhch
Q 043950 388 ENILKVGE 395 (458)
Q Consensus 388 ~~l~~~~~ 395 (458)
.++.-...
T Consensus 242 ~rl~l~e~ 249 (253)
T 2db0_A 242 SRLLLLEG 249 (253)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhc
Confidence 98876543
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.04 E-value=1.6e-08 Score=90.20 Aligned_cols=277 Identities=15% Similarity=0.060 Sum_probs=165.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
..++.++++++++|...+....-.+..++... ++.. =+++.|.+=+++++ +-+|-.|+++|+++.. ++..
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~ 137 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML 137 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence 44667788999999999999988888876542 3322 25788889999999 8999999999999987 3443
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
+. +.+.+.+.+.+.++.+|..|+.+..++....|+. + .+.+..+-..+ .+.++.++.+|+.++..+...
T Consensus 138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence 33 3577888899999999999999999998777653 2 25778887777 778888999999999999875
Q ss_pred CCCCChhhhhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccCC-hhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950 183 KPQPPFDQVRPALPALAQLIHLD---DEEVLSDACWTLSYLSYGT-NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 258 (458)
. ...+..++..+... ++-.+...++.+..+...+ +. ....+++.+..+|++.++.|...|+++
T Consensus 207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3 12334444444332 4666666677776665443 21 223577888899999999999999999
Q ss_pred HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHH
Q 043950 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK 338 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~ 338 (458)
+..+....... . ..++..+..++.++ ++.+|..|...|..++...|...+. .-..+.++++++|..+..
T Consensus 274 I~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t 342 (355)
T 3tjz_B 274 IVNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT 342 (355)
T ss_dssp HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred HHhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence 98885522211 1 34566777788888 8999999999999998766554432 233466777777777765
Q ss_pred HHHHHH
Q 043950 339 EAALAI 344 (458)
Q Consensus 339 ~a~~~L 344 (458)
.|+..|
T Consensus 343 ~Aittl 348 (355)
T 3tjz_B 343 LAITTL 348 (355)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 555444
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.03 E-value=7.8e-09 Score=83.64 Aligned_cols=225 Identities=17% Similarity=0.125 Sum_probs=170.6
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHH
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 271 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 271 (458)
.+.+..+..++...|+.++..++.++..+....+.......-..+++.+++++++.++.+...|++++..+..+.+-.-+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 55778899999999999999999999999976544444444456899999999999999999999999999887654433
Q ss_pred HHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950 272 CIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG 351 (458)
Q Consensus 272 ~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 351 (458)
.+. .+...+..++.++ ++-.+.+|+-.++-+--.+.. .+++..+.+++.+.+.+++..++.++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 333 3577888899987 888999999999988322211 136778888899999999999999999998754
Q ss_pred C-HHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cC
Q 043950 352 T-HEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SH 429 (458)
Q Consensus 352 ~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~ 429 (458)
. ++. -++++..+-++++++|+.+++.++.++..++...-.. +. ... -.+......++. -.
T Consensus 182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~----------~~-~~~--~~~~~~~v~~l~~~~ 243 (265)
T 3b2a_A 182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE----------NV-KIE--LLKISRIVDGLVYRE 243 (265)
T ss_dssp SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS----------CC-HHH--HHHHHHHHHHGGGCS
T ss_pred CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH----------hH-HHH--HHHHHHHHHHHHHhc
Confidence 2 121 2346777888999999999999999999998763221 11 111 123456666776 66
Q ss_pred CChHHHHHHHHHHHH
Q 043950 430 DNNGIREKAVKILET 444 (458)
Q Consensus 430 ~~~~v~~~a~~~l~~ 444 (458)
..|.++.+|..+-+.
T Consensus 244 ~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 244 GAPIIRLKAKKVSDL 258 (265)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHH
Confidence 789998888766543
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.01 E-value=2.3e-09 Score=106.44 Aligned_cols=196 Identities=13% Similarity=0.050 Sum_probs=149.2
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHH-HHHhCCCCccchhhHHHHHhHhhcC-ChhhH
Q 043950 193 PALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRL-VELLGHPSPSVLTPALWTVGNIVMG-DDFQT 270 (458)
Q Consensus 193 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~ 270 (458)
.++| +++.|+++++..+..++++|++++. ++...+.+...|++..+ ..+|.+++.+++..|+++|.||+.. ..+.+
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3444 5567899999999999999999996 45556667777887765 5678889999999999999999865 46777
Q ss_pred HHHHhcCChHHHHHHhccCCh---------------------hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh
Q 043950 271 QCIINHGAVPCLLALLIHNHK---------------------KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL 329 (458)
Q Consensus 271 ~~~~~~~~~~~l~~ll~~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll 329 (458)
..+++.|+++.|..++... . ..+...++.+|.+++.++.+....+.+.+.++.|+..+
T Consensus 113 ~~l~~~~il~~L~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAV-LETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHH-HHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhh-HHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 8889999999999998542 1 12344677888999988888888888889999999988
Q ss_pred ccC---ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChH---HHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950 330 QDA---EFDIKKEAALAIANATVRGTHEQIKYLVREGCIK---PLCDLLLCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 330 ~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~---~L~~ll~~~~~~v~~~~~~~l~~l~~~ 393 (458)
.+. ..+++..|+.+|..++.. +.+....+.+.+... .+..+.++.+ ..+..+++.+.+++..
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhhh
Confidence 543 467999999999999885 557777777766433 3333333333 3455677888888753
No 72
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=99.00 E-value=7.4e-07 Score=81.35 Aligned_cols=321 Identities=12% Similarity=0.151 Sum_probs=196.4
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCC---chhhHHhhhCC-HHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 108 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSP---GCRNLVLREEA-LIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 108 ~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~-l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
..++..++++|.. ...++.+.++..+..+..++| .....+.+... ...+.......++.-....++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 3567889998875 778999999999999988876 32233233222 222333332344445556666666666543
Q ss_pred CCCCChhhhhhhHH--HHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHh--CcHHHHHHHhC----CC------
Q 043950 183 KPQPPFDQVRPALP--ALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEA--GVCRRLVELLG----HP------ 247 (458)
Q Consensus 183 ~~~~~~~~~~~~l~--~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~ll~----~~------ 247 (458)
.+. .......++. -+...+.+ ++.+.+..++.++..+...+.. ...+.+. +.++.++.++. +.
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322 3333444444 34444544 3345566678888877755543 3334433 23555544332 11
Q ss_pred -------CccchhhHHHHHhHhhcCChhhHHHHHhcCCh--HHHHHHhccCChhhHHHHHHHHHHHhhcCC----HHHHH
Q 043950 248 -------SPSVLTPALWTVGNIVMGDDFQTQCIINHGAV--PCLLALLIHNHKKSIKKVACWTISNITAGN----REQIQ 314 (458)
Q Consensus 248 -------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~----~~~~~ 314 (458)
...+...++.+++-++. +++....+...++. +.++.+++.....++-+-+..++.|+.... .....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 13456778888888876 55565666655543 567777877667899999999999999744 22233
Q ss_pred H-HHHcCChHHHHHHhccC---ChhhHHHHHHHHHHhh---cCC----------------------CH----HHHHHHHH
Q 043950 315 A-VIDAGLIVPLVNVLQDA---EFDIKKEAALAIANAT---VRG----------------------TH----EQIKYLVR 361 (458)
Q Consensus 315 ~-l~~~~~~~~L~~ll~~~---~~~~~~~a~~~L~~l~---~~~----------------------~~----~~~~~l~~ 361 (458)
. ++..++ +.++..|... |+++....-.....+- ..- ++ ++...+.+
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 2 333334 4566666543 6665543322222211 100 00 01111111
Q ss_pred C--CChHHHHhhccC----------CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC
Q 043950 362 E--GCIKPLCDLLLC----------VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH 429 (458)
Q Consensus 362 ~--~~l~~L~~ll~~----------~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 429 (458)
+ .+++.|..++++ .|+.+...|+.=++.+++..+.. +..+.+.|+.+.+..|++|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSC
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcC
Confidence 1 247788888873 36778888888899999987764 6778899999999999999
Q ss_pred CChHHHHHHHHHHHHh
Q 043950 430 DNNGIREKAVKILETY 445 (458)
Q Consensus 430 ~~~~v~~~a~~~l~~~ 445 (458)
+|++|+..|...++++
T Consensus 459 ~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 459 SDSRVKYEALKATQAI 474 (480)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988875
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.90 E-value=1.1e-07 Score=77.00 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=150.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+.+..+..+|...|+.++..|+.+|.++...- +...+...-..+++.+++++.+.+ ..+...|+++|..+..+.|-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence 45788899999999999999999999998874 344444444568999999999998 8999999999999998655444
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
+.+. -+..++..++.++++-++..++..++.+-...+. .+++..+..++ .+.+..++..++.++.+++..
T Consensus 111 ~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 4443 2358899999999999999999999999322221 12466778888 999999999999999999986
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 043950 183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG 223 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 223 (458)
. ........++..+..+++++|+.+++.++.++-.+...
T Consensus 181 S--~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 181 S--ADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp C--SSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred c--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 4 23344577778888999999999999999999999854
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.84 E-value=1.8e-07 Score=83.53 Aligned_cols=318 Identities=13% Similarity=0.073 Sum_probs=175.0
Q ss_pred hhccHHHHHHhhcCC--CHHHHHHHHH-HHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950 21 KLEILPAMVAGVWSD--DNSLQLEATT-QFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG 97 (458)
Q Consensus 21 ~~~~i~~l~~~l~~~--~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~ 97 (458)
+.+.++. .+.++.. ++.-...++. .+.-+..++ .-...++. .+....++++.+++ ..++.-.-..+.+++..
T Consensus 24 k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~-~f~~~e~t--~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~ 98 (355)
T 3tjz_B 24 KSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGE-HLGTTEAT--EAFFAMTKLFQSND-PTLRRMCYLTIKEMSCI 98 (355)
T ss_dssp HHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTC-CCCHHHHH--HHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCC-CCchhHHH--HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCC
Confidence 3344555 3555543 4444444444 344444443 22222222 35677889999998 89999888888888885
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS 177 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~ 177 (458)
.++.. =++..|.+=++++++-+|..|+++++++.... -. + ...+++-+.+ .+.++.+++.|+.+..
T Consensus 99 ~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~-~-----~l~~~lk~~L-~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 99 AEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-ML-Q-----AIERYMKQAI-VDKVPSVSSSALVSSL 164 (355)
T ss_dssp SSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-TH-H-----HHHHHHHHHH-TCSSHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HH-H-----HHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 33321 23677888888899999999999999995432 11 1 1334445555 8899999999999999
Q ss_pred HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC---Cccchhh
Q 043950 178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP---SPSVLTP 254 (458)
Q Consensus 178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~ 254 (458)
.+.... .....+.++.+..++.+.++.++..++.++..+...+.. .+..++..+... ++-.+..
T Consensus 165 kL~~~~----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~ 231 (355)
T 3tjz_B 165 HLLKCS----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCM 231 (355)
T ss_dssp HHTTTC----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHhccC----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHH
Confidence 998654 335578899999999999999999999999999865432 223333333332 2222233
Q ss_pred HHHHHhHhhcCC-hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950 255 ALWTVGNIVMGD-DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE 333 (458)
Q Consensus 255 a~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 333 (458)
.++.+..++..+ +. ....+++.+..+|++. ++.|..+|+.++..+...... .. ..++..|..++.+.+
T Consensus 232 llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d 300 (355)
T 3tjz_B 232 MIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPK 300 (355)
T ss_dssp HHHHHTCC----------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSS
T ss_pred HHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCC
Confidence 344444444333 11 2246778888889988 899999999999998542211 11 235677888899999
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHH
Q 043950 334 FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGL 387 (458)
Q Consensus 334 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l 387 (458)
+.+|-.|+..|..+.... +..... .-..+.+++.++|..+...|+..|
T Consensus 301 ~niryvaLr~L~~l~~~~-P~~v~~-----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 AALRYAAVRTLNKVAMKH-PSAVTA-----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSSHHHHHHCC-------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHC-cHHHHH-----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 999999999999987742 222211 345577888888888766555444
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=3.7e-08 Score=84.72 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=142.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950 154 IPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVI 232 (458)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 232 (458)
+.+...+ .+.+...+..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466677 788899999999999999876322222224677888999994 89999999999999999954332222222
Q ss_pred HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHH
Q 043950 233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNRE 311 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~ 311 (458)
..+++.++..+.+++..+|..+..++..++...+ . ..+++.+...+++. ++.+|..++..++.+.. ..++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 3488999999999999999999999999986433 1 13678889999988 99999999999999764 3232
Q ss_pred H-HHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950 312 Q-IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 312 ~-~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 350 (458)
. ....+. .+++.+...+.+.++++|..|..+++.++..
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 1 122222 4889999999999999999999999999764
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.81 E-value=3.4e-08 Score=84.98 Aligned_cols=186 Identities=13% Similarity=0.165 Sum_probs=141.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh
Q 043950 112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV 191 (458)
Q Consensus 112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 191 (458)
+.+...+.+.+...|..++..|..+....+.....- ....++.+...+.++.+..++..++.++..++......-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 457888889999999999999999986533211100 1124566666663478889999999999999965322223445
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCC-hh-h
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGD-DF-Q 269 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~-~~-~ 269 (458)
..++|.+...+.+.++.++..+..++..++.... .. .+++.+...+++.++.+|..++.+++.+.... +. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7889999999999999999999999999986543 11 36788999999999999999999999965443 33 2
Q ss_pred HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
....+ ..+++.+..++.++ ++.+|..|..+++.++.
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 22223 25899999999988 99999999999999985
No 77
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.76 E-value=2.8e-06 Score=84.65 Aligned_cols=271 Identities=14% Similarity=0.126 Sum_probs=183.2
Q ss_pred CHHHHHHhhc---CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 043950 67 VVPRFVEFLM---REDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS--------DDVREQAVWALGN 135 (458)
Q Consensus 67 ~i~~L~~ll~---~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--------~~~~~~a~~~L~~ 135 (458)
++..|-+.|. +++ +.++.-|+..|+-+..+... .++..|...+.+.+ +.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3555556665 344 78999999999998875432 13677777776544 6788889999998
Q ss_pred hhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCChHHHHHHH
Q 043950 136 VAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLI-HLDDEEVLSDAC 214 (458)
Q Consensus 136 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~ 214 (458)
+..++.. + .++..|...+ .+.+......+..++..+..+.. . ..++..|+..+ .+.+..++..+.
T Consensus 464 a~~GS~~--e-----ev~e~L~~~L-~dd~~~~~~~AalALGli~vGTg--n----~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSAN--I-----EVYEALKEVL-YNDSATSGEAAALGMGLCMLGTG--K----PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCC--H-----HHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCC--C----HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCC--H-----HHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccC--C----HHHHHHHHHHHhccCcHHHHHHHH
Confidence 7655422 1 1455677777 44445566678888887654421 2 23344444433 355778999999
Q ss_pred HHHHHhccCChhhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhh
Q 043950 215 WTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS 293 (458)
Q Consensus 215 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 293 (458)
.+|+.+....++.. +.+++.|. +.++.+|..++.+++--..+.... ..++.|+..+.++.+..
T Consensus 530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 99998876655443 44444454 467778888888876544433222 23555555555444778
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh-ccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 043950 294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL-QDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLL 372 (458)
Q Consensus 294 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll 372 (458)
+|+.|+.+|+.+..+.++ .++.++..+ .+.++.+|..|+.+|+.+..+..... +++.|..+.
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~--------aid~L~~L~ 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS--------AIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--------HHHHHHHHc
Confidence 999999999998766532 466666644 56799999999999999987543211 366788888
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 043950 373 LCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 373 ~~~~~~v~~~~~~~l~~l~~~ 393 (458)
.++++.|+..|+.+|+.+...
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTT
T ss_pred cCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999988754
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.73 E-value=3.2e-07 Score=78.74 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=142.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhcCCCchhhHHhh-hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC-CCCh-
Q 043950 113 IFVKLLASPSDDVREQAVWALGN-VAADSPGCRNLVLR-EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP-QPPF- 188 (458)
Q Consensus 113 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~- 188 (458)
-+...+.+.+..-|..++..|.. ++.+.+.......+ ...+..+...+..+.+..++..++.++..++..-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35566788999999999999999 87554332200001 12455666666567788899999999999997544 3333
Q ss_pred hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChh
Q 043950 189 DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF 268 (458)
Q Consensus 189 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 268 (458)
.....++|.++..+.+..+.++..+..++..++...+.....-.-..+++.+...+++.++.+|..++.+|+.++...+.
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 56678999999999999999999988888888754321110000013678899999999999999999999999865542
Q ss_pred ---hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 269 ---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 269 ---~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
.....+...+++.+.+++.++ ++.||..|..+++.++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 222333357899999999988 99999999999999875
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.8e-07 Score=80.35 Aligned_cols=191 Identities=10% Similarity=0.049 Sum_probs=140.1
Q ss_pred HHHHhcccccHHHHHHHHHHHHH-hhcCCCCCC--hhhhhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh-hhHH-
Q 043950 156 LLAQLNEHAKLSMLRIATWTLSK-LCKGKPQPP--FDQVRPALPALAQLI-HLDDEEVLSDACWTLSYLSYGTN-DKIQ- 229 (458)
Q Consensus 156 l~~~l~~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~-~~~~- 229 (458)
+...+ .+.+..-+..++..|.. ++.+.+... ......++..+...+ ++.+..++..++.+++.++..-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34455 67888889999999999 876543322 222356788888889 78899999999999999985322 1221
Q ss_pred HHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCC
Q 043950 230 VVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN 309 (458)
Q Consensus 230 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 309 (458)
... ..+++.++..+++....++..+..++-.++...+.......-..+++.+...+++. ++.+|..++.+|+.++...
T Consensus 100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 122 23789999999998888999998888888764321110000013678889999998 8999999999999998633
Q ss_pred H---HHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 310 R---EQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 310 ~---~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
+ ......+...++|.+..++.+.+.++|..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 344444424699999999999999999999999999875
No 80
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.57 E-value=5.7e-05 Score=69.12 Aligned_cols=324 Identities=12% Similarity=0.080 Sum_probs=193.3
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHHHhCCCh-H-HHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 043950 65 AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS---MNTNVVIDHGAV-P-IFVKLLASPSDDVREQAVWALGNVAAD 139 (458)
Q Consensus 65 ~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~-~L~~ll~~~~~~~~~~a~~~L~~l~~~ 139 (458)
...+..++++|......++....+..+..+...++ .....+.+..-. . .+...+..++.-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 35678899999877668899999999999888665 333333433222 1 222233444455556666666666533
Q ss_pred CCchhhHHhhhCCHH--HHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhh--hhhhHHHHHHhhc----C-------
Q 043950 140 SPGCRNLVLREEALI--PLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ--VRPALPALAQLIH----L------- 204 (458)
Q Consensus 140 ~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~----~------- 204 (458)
.+...+.+ ...+. .++..+....+...+..++.++..|.+.+..+.... ....+|.++..+. +
T Consensus 156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 32211111 11222 355555332333445567788887777643222211 1234555544332 1
Q ss_pred ----C--ChHHHHHHHHHHHHhccCChhhHHHHHHhCcH--HHHHHHhCC-CCccchhhHHHHHhHhhcCCh----hhHH
Q 043950 205 ----D--DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVC--RRLVELLGH-PSPSVLTPALWTVGNIVMGDD----FQTQ 271 (458)
Q Consensus 205 ----~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i--~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~----~~~~ 271 (458)
+ ...++..++.|++-++-... ..+.+...++. ..|+.+++. ..+.+.+-++.++.|+....+ ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 24568889999998885444 55556655543 566666665 567888999999999987652 2222
Q ss_pred -HHHhcCChHHHHHHhccCC--hhhHHHHHHHHHHHhhc-----C-CHHHHH----------------HHHH--------
Q 043950 272 -CIINHGAVPCLLALLIHNH--KKSIKKVACWTISNITA-----G-NREQIQ----------------AVID-------- 318 (458)
Q Consensus 272 -~~~~~~~~~~l~~ll~~~~--~~~v~~~a~~~l~nl~~-----~-~~~~~~----------------~l~~-------- 318 (458)
.++..+++ .+++.|.... |+++....-+..-.+-. . ..++.. .++.
T Consensus 313 ~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 23334444 4555554321 44444433222222211 0 111111 1221
Q ss_pred --cCChHHHHHHhcc----------CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHH
Q 043950 319 --AGLIVPLVNVLQD----------AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEG 386 (458)
Q Consensus 319 --~~~~~~L~~ll~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~ 386 (458)
..++..|+++|.+ .|+.+..-|+.-++.++... +.....+.+-|+-..+..++.++|++|+..|+.+
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 1257889999973 36788888999999999874 4666677778999999999999999999999999
Q ss_pred HHHHHHh
Q 043950 387 LENILKV 393 (458)
Q Consensus 387 l~~l~~~ 393 (458)
+..++..
T Consensus 471 vQklm~~ 477 (480)
T 1ho8_A 471 TQAIIGY 477 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998754
No 81
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.56 E-value=3.2e-05 Score=80.37 Aligned_cols=389 Identities=9% Similarity=0.031 Sum_probs=216.4
Q ss_pred hccHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCC---------CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 043950 22 LEILPAMVAGVWS--DDNSLQLEATTQFRILLSIER---------SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWA 90 (458)
Q Consensus 22 ~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~ 90 (458)
.+....|.+.+.+ .+..+|..|+..|.+.....- ++..+.. +-..+++.+.++. ..+|..++.+
T Consensus 34 p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~----ik~~ll~~l~~~~-~~ir~~l~~~ 108 (960)
T 1wa5_C 34 DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVEL----IKKEIVPLMISLP-NNLQVQIGEA 108 (960)
T ss_dssp TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHH----HHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHH----HHHHHHHHHHhCC-HHHHHHHHHH
Confidence 3455667777754 368899999999999875310 1112222 3344555555566 7999999999
Q ss_pred HHHHcCCC-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC------chhhHHh--hhCCHHHHHHH--
Q 043950 91 LTNIASGT-SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP------GCRNLVL--REEALIPLLAQ-- 159 (458)
Q Consensus 91 L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~--~~~~l~~l~~~-- 159 (458)
+..++... ++.- .+.++.|++.+.++++..+..++.++..++.... +.+..+. -....++++..
T Consensus 109 ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~ 183 (960)
T 1wa5_C 109 ISSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLK 183 (960)
T ss_dssp HHHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988721 1100 2568888988888888888999999999986321 1111110 01123333332
Q ss_pred -----hcccc-c-------HHHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC------C---------hHHH
Q 043950 160 -----LNEHA-K-------LSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLD------D---------EEVL 210 (458)
Q Consensus 160 -----l~~~~-~-------~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~------~---------~~~~ 210 (458)
+.... + ..+...++.++..+.... +..........++.+..++... + ..++
T Consensus 184 ~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk 263 (960)
T 1wa5_C 184 TVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVK 263 (960)
T ss_dssp HHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHH
Confidence 22211 1 123334666666665432 2111112244455555555321 1 2466
Q ss_pred HHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC-----CCCccchhhHHHHHhHhhcCChhhHHHHHh-cCChHHH--
Q 043950 211 SDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-----HPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCL-- 282 (458)
Q Consensus 211 ~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l-- 282 (458)
..++.++..+.....+...... ..+++...+.+. ...+.++..++..+..++.... . ..++. .+.++.+
T Consensus 264 ~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~-~~~~~~~~~l~~li~ 340 (960)
T 1wa5_C 264 SSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-Y-FEIFNNESAMNNITE 340 (960)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-H-HGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-H-HHHHcCchHHHHHHH
Confidence 7788888887754443332222 235555566553 2345677788888887765322 1 11111 1222222
Q ss_pred ---HHHhcc----------------------CChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc------c
Q 043950 283 ---LALLIH----------------------NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ------D 331 (458)
Q Consensus 283 ---~~ll~~----------------------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~------~ 331 (458)
+..+.- +.....|..|..++..++...++.. .. .+++.+...+. +
T Consensus 341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~ 416 (960)
T 1wa5_C 341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPS 416 (960)
T ss_dssp HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC---
T ss_pred HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcc
Confidence 222210 1012567788888888876443221 11 13344444444 4
Q ss_pred CChhhHHHHHHHHHHhhcCCC-HH----------HHHHHHHCCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhchhh
Q 043950 332 AEFDIKKEAALAIANATVRGT-HE----------QIKYLVREGCIKPLCDLLLCV---DPKIVTVCLEGLENILKVGEAE 397 (458)
Q Consensus 332 ~~~~~~~~a~~~L~~l~~~~~-~~----------~~~~l~~~~~l~~L~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~ 397 (458)
.+...+..|+.+++.++.++. .. ....+.. ..+...+.++ ++.++..++++++++......
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~- 491 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK- 491 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-
Confidence 567889999999999976421 00 1111111 1223333445 889999999999998764311
Q ss_pred cccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950 398 KNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG 448 (458)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 448 (458)
.+...+ +..+.+.+.++++.|+..|...+.++.+.
T Consensus 492 -----------~~l~~~-----l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 492 -----------AQLIEL-----MPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp -----------HHHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred -----------HHHHHH-----HHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 112222 45566666677899999999999998874
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.54 E-value=7.2e-05 Score=77.76 Aligned_cols=344 Identities=9% Similarity=0.014 Sum_probs=194.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC------h
Q 043950 26 PAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT------S 99 (458)
Q Consensus 26 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~------~ 99 (458)
..+++.+.+++..++...+.++..++..+-+..+ .++++.|++.+++++ +..+..++.++..++... +
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 3556666666688888888888888775322222 257899999998877 688889999999988732 1
Q ss_pred hhHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhc-CCCchh-hHHhhhCCHHHHHH
Q 043950 100 MNTNVV---IDHGAVPIFVK-------LLASPSD---------DVREQAVWALGNVAA-DSPGCR-NLVLREEALIPLLA 158 (458)
Q Consensus 100 ~~~~~~---~~~~~i~~L~~-------ll~~~~~---------~~~~~a~~~L~~l~~-~~~~~~-~~~~~~~~l~~l~~ 158 (458)
+.+..+ +. ...+.+++ .+.+... .+...++.++.++.. +.+..- +.+ ...++.+..
T Consensus 162 ~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~ 238 (960)
T 1wa5_C 162 ELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHK 238 (960)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHH
Confidence 222211 11 12333333 2443211 233346666666653 223211 111 112333344
Q ss_pred Hhccc-----cc---------HHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-----CCChHHHHHHHHHHHH
Q 043950 159 QLNEH-----AK---------LSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-----LDDEEVLSDACWTLSY 219 (458)
Q Consensus 159 ~l~~~-----~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-----~~~~~~~~~~~~~l~~ 219 (458)
.+... .+ ..++..++.++..+....+..-......+++.....+. ..+..++..++..+..
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 44221 11 24667778888877754322111223455555555554 3457788888888888
Q ss_pred hccCChhhHH----HHHHhCcH-HHHHHHhC-----------------------CCCccchhhHHHHHhHhhcCChhhHH
Q 043950 220 LSYGTNDKIQ----VVIEAGVC-RRLVELLG-----------------------HPSPSVLTPALWTVGNIVMGDDFQTQ 271 (458)
Q Consensus 220 l~~~~~~~~~----~~~~~~~i-~~L~~ll~-----------------------~~~~~~~~~a~~~l~~l~~~~~~~~~ 271 (458)
++........ .++. .++ ..++..+. +.....|..|..+|..++...++..-
T Consensus 319 ~~~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~ 397 (960)
T 1wa5_C 319 VTRIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVT 397 (960)
T ss_dssp HHTSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHH
T ss_pred HhCcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHH
Confidence 7744321100 1111 122 22333332 11235677888888888765542211
Q ss_pred HHHhcCChHHHHHHhc------cCChhhHHHHHHHHHHHhhcC---CH---H------HHHHHHHcCChHHHHHHhccC-
Q 043950 272 CIINHGAVPCLLALLI------HNHKKSIKKVACWTISNITAG---NR---E------QIQAVIDAGLIVPLVNVLQDA- 332 (458)
Q Consensus 272 ~~~~~~~~~~l~~ll~------~~~~~~v~~~a~~~l~nl~~~---~~---~------~~~~l~~~~~~~~L~~ll~~~- 332 (458)
..+++.+...+. ++ +...|+.|..+++.++.+ .. . ....++..-++ ..+.+.
T Consensus 398 ----~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~----p~l~~~~ 468 (960)
T 1wa5_C 398 ----NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIA----PDLTSNN 468 (960)
T ss_dssp ----HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTH----HHHHCSS
T ss_pred ----HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhH----HHhcCCC
Confidence 123445555555 34 678899999999999752 11 0 22222211122 334555
Q ss_pred --ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950 333 --EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 333 --~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~ 393 (458)
++.+|..|+|+++.++..-.++.... +++.++..+.+++..|+..|+.++.++++.
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 78999999999999987654443333 577788888888899999999999999874
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.54 E-value=1.6e-08 Score=77.77 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=91.6
Q ss_pred hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH
Q 043950 234 AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313 (458)
Q Consensus 234 ~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 313 (458)
...++.+..+|+++++.+|..|+++|+.+.. ..++.|+.+|.++ ++.+|..|+++|+++.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~-- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER-- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence 4567889999999999999999999987642 1258899999988 99999999999999852 22
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHH
Q 043950 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLEN 389 (458)
Q Consensus 314 ~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~ 389 (458)
.++.|+..+.++++.+|..|+++|+++. ++. .++.|..+++++++.|+..+..+|.+
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999985 222 36778888888999999999888764
No 84
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.53 E-value=3.2e-08 Score=76.04 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=93.3
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh
Q 043950 65 AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144 (458)
Q Consensus 65 ~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 144 (458)
...++.+..+|++++ +.+|..|++.|+.+... .++.|+.+++++++.+|..++++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 456888999999988 79999999998876541 26899999999999999999999999842
Q ss_pred hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220 (458)
Q Consensus 145 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 220 (458)
...++.++..+ .++++.++..++++|..+.. ...++.|..+++++++.++..+.++|..+
T Consensus 72 -----~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 12478888888 78889999999999999852 46788999999999999999999988753
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.50 E-value=2e-05 Score=79.52 Aligned_cols=307 Identities=13% Similarity=0.133 Sum_probs=211.8
Q ss_pred hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950 19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT 98 (458)
Q Consensus 19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~ 98 (458)
......+..+++.+...+..-+..++..+..+..+...... ...+++..|.+.+.+..+ . +.|+.++..++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k~~-~--~~a~~~~~~~~~~~ 83 (986)
T 2iw3_A 10 QQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHD---VPEHFFGELAKGIKDKKT-A--ANAMQAVAHIANQS 83 (986)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS---CCHHHHHHHHHHHTSHHH-H--HHHHHHHHHHTCTT
T ss_pred cchHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccc---cchhHHHHHHHHHhccCC-H--HHHHHHHHHHHHhc
Confidence 44455566677777765566667788888888665311111 112577888888877652 3 88999999998533
Q ss_pred h---hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHH
Q 043950 99 S---MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWT 175 (458)
Q Consensus 99 ~---~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~ 175 (458)
. ..-..++ +.++.++....+....+|..|-.+...+...-+... + ...++.++..+.....-..+..++.+
T Consensus 84 ~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~ 157 (986)
T 2iw3_A 84 NLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAA 157 (986)
T ss_dssp TCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHH
Confidence 2 2212222 678999999888889999999888888775443321 1 34688999999555567888999999
Q ss_pred HHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC--ChhhHHHHHHhCcHHHHHHHhCCCCccchh
Q 043950 176 LSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG--TNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253 (458)
Q Consensus 176 l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 253 (458)
+..++...+..-......++|.+...+.+..+++...+..++..+|.. +.+. ...+|.|++.+.+++. ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~ 229 (986)
T 2iw3_A 158 FSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VP 229 (986)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HH
T ss_pred HHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hH
Confidence 999997644333344478888888999999999999988888888742 2211 1478999999998753 44
Q ss_pred hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHhcc
Q 043950 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQIQAVIDAGLIVPLVNVLQD 331 (458)
Q Consensus 254 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~ 331 (458)
.+...|+.-+.-.. .....+ +=.+|.|..-|... ...+++.++-++.|+|. +++.....++. ..+|-+......
T Consensus 230 ~~~~~l~~~tfv~~-v~~~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~ 305 (986)
T 2iw3_A 230 ETVHLLGATTFVAE-VTPATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFAT 305 (986)
T ss_dssp HHHHHHTTCCCCSC-CCHHHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTT
T ss_pred HHHHHhhcCeeEee-ecchhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhc
Confidence 45555554433221 111111 12467777778777 77899999999999997 67776666654 477777776654
Q ss_pred -CChhhHHHHHHHHHHhhc
Q 043950 332 -AEFDIKKEAALAIANATV 349 (458)
Q Consensus 332 -~~~~~~~~a~~~L~~l~~ 349 (458)
.+|++|.-|..++..+..
T Consensus 306 ~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 306 IADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CCSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 489999999888888843
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.39 E-value=2.3e-05 Score=79.20 Aligned_cols=296 Identities=14% Similarity=0.110 Sum_probs=200.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC--CChhhh
Q 043950 114 FVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ--PPFDQV 191 (458)
Q Consensus 114 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~ 191 (458)
+.+-+...+..-+..+...+.++.......+. ...+.+..+.+.+.+..+. +.|+.++..++..... ......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHD--VPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS--CCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccc--cchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence 33334432233335566667776544322211 1235677777777443344 8899999999976522 233444
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCChhh
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYG-TNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDDFQ 269 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~ 269 (458)
-+.+|.+.....+.+..++..+-.++..+... ++... ..+++.|+..+.+. .+..+..|+.++..++...+..
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 57788888888888899998888777777643 33222 34678888888764 6899999999999999766655
Q ss_pred HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950 270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA 347 (458)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 347 (458)
...-+ ..++|.+-..+-+. .++|+..|..++..+|. ++.+. ..++|.|++.+.+++. ..+++..|+.-
T Consensus 169 ~~~~~-~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 169 VALRM-PELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT 238 (986)
T ss_dssp HHHHH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred HHHhc-cchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence 44333 46889999999888 89999999999999986 44321 2478999999987633 55667777666
Q ss_pred hcCCC--HHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHh
Q 043950 348 TVRGT--HEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEG 425 (458)
Q Consensus 348 ~~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 425 (458)
+...+ ...... .++.|.+-|......+.+++.-++.|+++..++.. +..+|... .+..+..
T Consensus 239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-------~~~~f~~~-----l~p~~~~ 301 (986)
T 2iw3_A 239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-------VIAPFLGK-----LLPGLKS 301 (986)
T ss_dssp CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHTT-----THHHHHH
T ss_pred eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-------HHhhhhhh-----hhhHHHH
Confidence 55432 222222 36777777888888899999999999999877653 12222222 2666666
Q ss_pred h-hcCCChHHHHHHHHHHHHhc
Q 043950 426 L-KSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 426 l-~~~~~~~v~~~a~~~l~~~~ 446 (458)
. ....+|++++.|.+.+.++.
T Consensus 302 ~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 302 NFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HTTTCCSHHHHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHH
Confidence 4 45688999988888887773
No 87
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.38 E-value=1.4e-05 Score=69.45 Aligned_cols=195 Identities=14% Similarity=0.095 Sum_probs=141.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH
Q 043950 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 274 (458)
Q Consensus 195 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 274 (458)
...++.-|.+.+.+.+..++.-|..+...+...+..++..+++..|++.....+...+..++.++.++..+.......+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 34566777788888899999999986656667888899999999999999999999999999999999875444433333
Q ss_pred hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH----------cCChHHHHHHhc---cCChhhHHHHH
Q 043950 275 NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID----------AGLIVPLVNVLQ---DAEFDIKKEAA 341 (458)
Q Consensus 275 ~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~----------~~~~~~L~~ll~---~~~~~~~~~a~ 341 (458)
...++..+..++.+. +..|.+.|...|-.++..++.....+.+ ...++.|+.+|+ +.|.+++.+|+
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 566889999999976 8899999999999998644323222221 124889999997 67899999998
Q ss_pred HHHHHhhcCCC-HH----HHHHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHH
Q 043950 342 LAIANATVRGT-HE----QIKYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENIL 391 (458)
Q Consensus 342 ~~L~~l~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~ 391 (458)
..+..+....+ .+ ....+.+.|.-..+...++.. +++++.+ +.+.....
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q-l~iyE~~~ 334 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ-LVLYENAL 334 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH-HHHHHHHh
Confidence 88877766543 23 233444556555666667654 6666655 34444433
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.35 E-value=8.5e-05 Score=77.42 Aligned_cols=329 Identities=11% Similarity=0.025 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhcC-CCCccHHHHHHcCCHHHHHHhhc----------------CCCCHHHHHHHHHHHHHHcCCChh
Q 043950 38 SLQLEATTQFRILLSI-ERSPRIEDVIQAGVVPRFVEFLM----------------REDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 38 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~i~~L~~ll~----------------~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
.++..++.++...+.. .-+.. ....+++.+.. +. .++ ++++..|+.++..+....+.
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~ 277 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC 277 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred hHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence 6788888888876652 10111 22345666665 41 133 78999999999999874221
Q ss_pred -hHHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhcCCCch-hhHHh-----hh----CCHHHHHHH
Q 043950 101 -NTNVVIDHGAVPIFVKL-------LASPS---DDVREQAVWALGNVAADSPGC-RNLVL-----RE----EALIPLLAQ 159 (458)
Q Consensus 101 -~~~~~~~~~~i~~L~~l-------l~~~~---~~~~~~a~~~L~~l~~~~~~~-~~~~~-----~~----~~l~~l~~~ 159 (458)
.+...+. .+++.++.+ +...+ .+.....+..+..++...+.. .+.+. .. ..++.++..
T Consensus 278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~ 356 (971)
T 2x1g_F 278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHC 356 (971)
T ss_dssp GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH
Confidence 1111111 112333221 23334 366666777777766432211 10000 01 233444443
Q ss_pred hcc----cccHHHHHHHHHHHHHhhcCC--------CCCCh----hhhhhhHHHHHHhhcCCC--------h-------H
Q 043950 160 LNE----HAKLSMLRIATWTLSKLCKGK--------PQPPF----DQVRPALPALAQLIHLDD--------E-------E 208 (458)
Q Consensus 160 l~~----~~~~~~~~~a~~~l~~l~~~~--------~~~~~----~~~~~~l~~l~~ll~~~~--------~-------~ 208 (458)
... ..++++...+++.+..++... ..... .....+++.++..+..++ + .
T Consensus 357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~ 436 (971)
T 2x1g_F 357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC 436 (971)
T ss_dssp HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence 322 246778888988888876511 01111 122344455554443211 1 2
Q ss_pred HHHHHHHHHHHhccCCh-hhHHHHHHhCcHHHHHHHhCC-----CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHH
Q 043950 209 VLSDACWTLSYLSYGTN-DKIQVVIEAGVCRRLVELLGH-----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282 (458)
Q Consensus 209 ~~~~~~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l 282 (458)
.+..+..++..++.... ..... +++.+...+.+ .++..++.++.+++.++.+...... ..++.+
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l 506 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHH
Confidence 44555556666554332 11121 22333333332 5778899999999999876543321 233333
Q ss_pred HHHh---c--cCChhhHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHH
Q 043950 283 LALL---I--HNHKKSIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHE 354 (458)
Q Consensus 283 ~~ll---~--~~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 354 (458)
+.++ . ++ ++.+|..++|+++.++. .++++.. .+++.++..+ + +.++..|++++.+++......
T Consensus 507 ~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~ 577 (971)
T 2x1g_F 507 MRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ 577 (971)
T ss_dssp HHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh
Confidence 3333 2 23 78999999999999985 1222222 2566666666 2 789999999999999765444
Q ss_pred HHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhc
Q 043950 355 QIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 355 ~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~~ 394 (458)
...++ ..++..+..++.. -+.+.+..++.++..++...
T Consensus 578 l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 578 LKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred ccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 33332 2356667777776 35678888999999998753
No 89
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.32 E-value=2.2e-05 Score=68.19 Aligned_cols=188 Identities=12% Similarity=0.119 Sum_probs=142.8
Q ss_pred HHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH-H
Q 043950 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI-D 318 (458)
Q Consensus 240 L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~ 318 (458)
+++-|.+.+...++.+++-|..+...+......++..+++..|+.+.... +...+..+..++.++..+. ..+.-++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFV-DGMLGVVAH 200 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSH-HHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhcc-ccccchhCC
Confidence 33445556677788899999986666778889999999999999999998 9999999999999998753 4454555 3
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH--------C--CChHHHHhhcc---CCCHHHHHHHHH
Q 043950 319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR--------E--GCIKPLCDLLL---CVDPKIVTVCLE 385 (458)
Q Consensus 319 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--------~--~~l~~L~~ll~---~~~~~v~~~~~~ 385 (458)
..++..+..++.+.+..+.+.|+..|..++...+... ..+.+ . --++.|+..++ ..|.+++.+++.
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~-~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNA-PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccc-hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 4588889999998889999999999999987653111 11111 1 23788999997 678999999999
Q ss_pred HHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC--ChHHHHH
Q 043950 386 GLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD--NNGIREK 437 (458)
Q Consensus 386 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~ 437 (458)
+|..++...+... ..+.+...+.+.|.-+.+...+... +++++++
T Consensus 280 LIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 9999998766432 1345678888888777888876665 6676644
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.31 E-value=0.00023 Score=73.57 Aligned_cols=341 Identities=11% Similarity=0.098 Sum_probs=186.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCC---h--hhHHHHHh
Q 043950 34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFV-EFLMREDYPQLQYEAAWALTNIASGT---S--MNTNVVID 107 (458)
Q Consensus 34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~ 107 (458)
++++++...++.++....+- -....+.+.++++.++ .++. + ++++..|+.+|..+.... + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 45677778888888888653 3456777888999999 8875 3 789999999999998732 2 12211110
Q ss_pred --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhcCC-------CchhhHHhhhCCHHHHHHHhcccc
Q 043950 108 --HGAVPIF--------------VKLLASPSDDVREQAVWALGNVAADS-------PGCRNLVLREEALIPLLAQLNEHA 164 (458)
Q Consensus 108 --~~~i~~L--------------~~ll~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~l~~~l~~~~ 164 (458)
.+.++.+ .......+.+..+..+..+..+.... +..+..+. .++..++... ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 11112234566666666665554321 11111111 1223444433 455
Q ss_pred cHHHHHHHHHHHHHhhcCC--CCCChhhhh----hhHHHHHHhhcCCC-------------------hH--HHHHHH-HH
Q 043950 165 KLSMLRIATWTLSKLCKGK--PQPPFDQVR----PALPALAQLIHLDD-------------------EE--VLSDAC-WT 216 (458)
Q Consensus 165 ~~~~~~~a~~~l~~l~~~~--~~~~~~~~~----~~l~~l~~ll~~~~-------------------~~--~~~~~~-~~ 216 (458)
+.++...++..-..+.... ......... .+++.++.-+.-++ .+ ..-... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 7777777776655555421 111222333 34444444443221 00 111111 22
Q ss_pred HHHhccCC-hhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc-----
Q 043950 217 LSYLSYGT-NDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH----- 288 (458)
Q Consensus 217 l~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~----- 288 (458)
|..++.-. ++..+ -+++.+.+.+.+ .++..++.++++++.++.+..+....-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 22222111 11111 133444444554 578899999999999987654432222223578888888864
Q ss_pred CChhhHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHH--------
Q 043950 289 NHKKSIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIK-------- 357 (458)
Q Consensus 289 ~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-------- 357 (458)
+ ...++..++|+++..+. .+++.... ++..|+..+...++.++..|++++.+++..+......
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 2 44567788899998875 33443332 4556777777777899999999999999754432210
Q ss_pred HHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 358 YLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 358 ~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
++- ..+..+......-+++-+..+.++++.++...+.
T Consensus 586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 110 1222333333344556667788888888876553
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.24 E-value=0.0024 Score=67.01 Aligned_cols=355 Identities=10% Similarity=0.092 Sum_probs=189.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhc---C-CCC---ccH-----HHHHHc--CCHHHHHHhhcCCCCHHHHHHHH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLS---I-ERS---PRI-----EDVIQA--GVVPRFVEFLMREDYPQLQYEAA 88 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~---~-~~~---~~~-----~~~~~~--~~i~~L~~ll~~~~~~~i~~~a~ 88 (458)
+.++.+++.++ .++..+..++..|..+.. . ... ... ..+.+. .+++.+..++....+++++..++
T Consensus 138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL 216 (1049)
T 3m1i_C 138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL 216 (1049)
T ss_dssp THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45788888886 445455555555554431 1 101 001 112221 23344455555444478999999
Q ss_pred HHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCC--Cc---hhhHHhhhCCHHHHHHHhc-
Q 043950 89 WALTNIASGTSMNTNVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAADS--PG---CRNLVLREEALIPLLAQLN- 161 (458)
Q Consensus 89 ~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~~~~l~~l~~~l~- 161 (458)
.++.+...--+ ...+.+...++.+. .++ .++.++..++.+|..+.... +. ....+.. .++.++..+.
T Consensus 217 ~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~ 290 (1049)
T 3m1i_C 217 ESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIAT 290 (1049)
T ss_dssp HHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHH
Confidence 99998766322 23355566677776 344 37899999999999998653 21 1111111 1122222110
Q ss_pred ----------------ccccHHHHHHHHHHHHHhhcCC------CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950 162 ----------------EHAKLSMLRIATWTLSKLCKGK------PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY 219 (458)
Q Consensus 162 ----------------~~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 219 (458)
.+.+.+.....+..+..+.... +.........+++.++.....++.++...++.....
T Consensus 291 si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~ 370 (1049)
T 3m1i_C 291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN 370 (1049)
T ss_dssp HTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1224444445555444332210 111122335567777777777788888888877766
Q ss_pred hcc----CC--hhhHHHHHHhCcHHHHHHHhCCCCc----------------------cchhhHHHHHhHhhcCChhhHH
Q 043950 220 LSY----GT--NDKIQVVIEAGVCRRLVELLGHPSP----------------------SVLTPALWTVGNIVMGDDFQTQ 271 (458)
Q Consensus 220 l~~----~~--~~~~~~~~~~~~i~~L~~ll~~~~~----------------------~~~~~a~~~l~~l~~~~~~~~~ 271 (458)
++. .. ......++ ..+++.++..+..+++ ..+..+..+|..++...+...-
T Consensus 371 l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l 449 (1049)
T 3m1i_C 371 LVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE 449 (1049)
T ss_dssp HHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 664 11 11112222 1345566665543211 0122345555555533332211
Q ss_pred HHHhcCChHHHHHHhcc-CChhhHHHHHHHHHHHhhcCCHHHH-HHHHHcCChHHHHHHhcc-----CChhhHHHHHHHH
Q 043950 272 CIINHGAVPCLLALLIH-NHKKSIKKVACWTISNITAGNREQI-QAVIDAGLIVPLVNVLQD-----AEFDIKKEAALAI 344 (458)
Q Consensus 272 ~~~~~~~~~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~~~~~L~~ll~~-----~~~~~~~~a~~~L 344 (458)
. -+.+.+-..+.+ ..+++.++.++++++.++.+..... ..+.. .+++.+..+... +++.++..+++++
T Consensus 450 ~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l 524 (1049)
T 3m1i_C 450 E----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVV 524 (1049)
T ss_dssp H----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence 1 123444455543 2277889999999999986422221 11111 244444443321 2344555688999
Q ss_pred HHhhcC--CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 345 ANATVR--GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 345 ~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
+.++.. ..+++.. .+++.++..+.++++.|+..|+.++.++++...
T Consensus 525 gry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 525 GQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 877643 1222222 257778888888899999999999999998644
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.17 E-value=0.00062 Score=70.94 Aligned_cols=390 Identities=9% Similarity=0.037 Sum_probs=212.2
Q ss_pred hccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCC---CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950 22 LEILPAMVAGVW-SDDNSLQLEATTQFRILLSIER---SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG 97 (458)
Q Consensus 22 ~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~ 97 (458)
.+..+.+..+|. +.++.+|..|+..|.+.....- ++..+..+...+++.+.+.- .+. +.++...+.++..++..
T Consensus 38 p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~-~~vr~kl~~~la~i~~~ 115 (971)
T 2x1g_F 38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFA-GGP-KIVLNRLCISLGAYIVH 115 (971)
T ss_dssp THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHT-TSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHHHH
Confidence 445666777776 4678999999999998876420 22233444445556555543 234 68999999999998874
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCC------CHHHHHHHHHHHHHhhcC----CCchh-----hHHhhhCCHHHHHHHh--
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLASP------SDDVREQAVWALGNVAAD----SPGCR-----NLVLREEALIPLLAQL-- 160 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~~----~~~~~-----~~~~~~~~l~~l~~~l-- 160 (458)
... . =.+.++.++..++++ ++..++.++.+|..++.+ .+..+ +.+. ..++.++..+
T Consensus 116 ~~p--~---Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~~ 188 (971)
T 2x1g_F 116 MLG--E---WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVER 188 (971)
T ss_dssp TTC--C---------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHHH
T ss_pred ccc--c---ccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 322 1 125678888888664 567888899998888742 11111 1111 1344444333
Q ss_pred --cccccH-------HHHHHHHHHHHHhhc--CCCCCChhhhhhhHHHHHHhhc----------------CCChHHHHHH
Q 043950 161 --NEHAKL-------SMLRIATWTLSKLCK--GKPQPPFDQVRPALPALAQLIH----------------LDDEEVLSDA 213 (458)
Q Consensus 161 --~~~~~~-------~~~~~a~~~l~~l~~--~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~~~~~~ 213 (458)
....++ .++..++.++..... ..+.. ....+++.+.. +. .++++++..+
T Consensus 189 ~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a 264 (971)
T 2x1g_F 189 YLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC 264 (971)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred HHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence 222222 678888888876555 22222 44667777666 41 1467889999
Q ss_pred HHHHHHhccCCh--hhHHHHHHhCcHHHHHH-------HhCCCCc---cchhhHHHHHhHhhcCChhhHH----------
Q 043950 214 CWTLSYLSYGTN--DKIQVVIEAGVCRRLVE-------LLGHPSP---SVLTPALWTVGNIVMGDDFQTQ---------- 271 (458)
Q Consensus 214 ~~~l~~l~~~~~--~~~~~~~~~~~i~~L~~-------ll~~~~~---~~~~~a~~~l~~l~~~~~~~~~---------- 271 (458)
+.++..+....+ +... .+. .+++.++. .+...+. ......+..+..++........
T Consensus 265 ~~~l~~i~~~~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 342 (971)
T 2x1g_F 265 LKTMVNIIIQPDCHNYPK-TAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPEL 342 (971)
T ss_dssp HHHHHHHHHCSGGGGCHH-HHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHcCccccccHH-HHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 999999986433 1111 111 12233322 2233342 5666667777666543322211
Q ss_pred -HHHhcCChHHHHHHhcc----CChhhHHHHHHHHHHHhhcC--------C-H---HHHHHHHHcCChHHHHHHhccCC-
Q 043950 272 -CIINHGAVPCLLALLIH----NHKKSIKKVACWTISNITAG--------N-R---EQIQAVIDAGLIVPLVNVLQDAE- 333 (458)
Q Consensus 272 -~~~~~~~~~~l~~ll~~----~~~~~v~~~a~~~l~nl~~~--------~-~---~~~~~l~~~~~~~~L~~ll~~~~- 333 (458)
..+ ..+++.++.+... ..++.+...+++....++.. . + ......+. .+++.++..+..++
T Consensus 343 ~~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~p~~ 420 (971)
T 2x1g_F 343 SILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA-HLTRILVRKSEQPDE 420 (971)
T ss_dssp HHHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH-HHHHHHHHHTSCCCT
T ss_pred cHHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HHHHHHHHHhcCCCc
Confidence 011 1345555665533 22678899999888887641 0 0 11112222 24455555543211
Q ss_pred --------------hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-----CCHHHHHHHHHHHHHHHHhc
Q 043950 334 --------------FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-----VDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 334 --------------~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-----~~~~v~~~~~~~l~~l~~~~ 394 (458)
...|..+..++..++..........+ ++.+...+.. .+...++.++.+++.+.+..
T Consensus 421 ~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~ 495 (971)
T 2x1g_F 421 KSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHF 495 (971)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-
T ss_pred ccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 13556677777777654433333332 2222333322 56778899999999886644
Q ss_pred hhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc-CCChHHHHHHHHHHHHhcC
Q 043950 395 EAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS-HDNNGIREKAVKILETYWC 447 (458)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~ 447 (458)
.... ......+ ++.+..+.. ++++.|+..+.+++.+|.+
T Consensus 496 ~~~~---------~~~l~~l-----~~~l~~l~~~d~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 496 GGEE---------KRQIPRL-----MRVLAEIPYEKLNVKLLGTALETMGSYCN 535 (971)
T ss_dssp --------------CHHHHH-----HHHHHHSCTTTSCHHHHHHHHHHHHHTHH
T ss_pred Chhh---------hHHHHHH-----HHHHHhcCccccCHHHHHHHHHHHHHHHH
Confidence 3321 0111222 334444442 3589999999999998864
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.09 E-value=0.0015 Score=68.53 Aligned_cols=348 Identities=10% Similarity=0.075 Sum_probs=183.4
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--hh---hH
Q 043950 29 VAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT--SM---NT 102 (458)
Q Consensus 29 ~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~--~~---~~ 102 (458)
.+.+. .++..++..++.++..++.-- ....+.+..+++.+++.+.. + ++++..|+.+|..+.... +. ..
T Consensus 200 ~~~l~~~~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~ 274 (1049)
T 3m1i_C 200 FQVLEQGSSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIK 274 (1049)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHH
Confidence 33343 345778888999998876532 23345556777777743322 4 799999999999998642 11 11
Q ss_pred HHHHh--CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhc-------CCCchhhHHhhhCCHHHHHHH
Q 043950 103 NVVID--HGAVPIFVK-LL-------------ASPSDDVREQAVWALGNVAA-------DSPGCRNLVLREEALIPLLAQ 159 (458)
Q Consensus 103 ~~~~~--~~~i~~L~~-ll-------------~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~l~~l~~~ 159 (458)
..+.. .+.+..+.. ++ ...+.+.....+..+..+.. ..+..+..+ ...++.++..
T Consensus 275 ~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~ 352 (1049)
T 3m1i_C 275 RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQL 352 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHH
Confidence 11110 122222211 11 12234444445555444332 111112211 1234555554
Q ss_pred hcccccHHHHHHHHHHHHHhhc----CCCC--CChhhhhhhHHHHHHhhcCC-------------------Ch---HHHH
Q 043950 160 LNEHAKLSMLRIATWTLSKLCK----GKPQ--PPFDQVRPALPALAQLIHLD-------------------DE---EVLS 211 (458)
Q Consensus 160 l~~~~~~~~~~~a~~~l~~l~~----~~~~--~~~~~~~~~l~~l~~ll~~~-------------------~~---~~~~ 211 (458)
. ..++.++...++..+..++. .... ........+++.++..+.-+ |. ..+.
T Consensus 353 ~-~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~ 431 (1049)
T 3m1i_C 353 S-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYK 431 (1049)
T ss_dssp H-TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHH
T ss_pred H-cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHH
Confidence 4 45577788888877777766 3211 11123345555555554311 00 1222
Q ss_pred HHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc-
Q 043950 212 DACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH- 288 (458)
Q Consensus 212 ~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~- 288 (458)
.+..+|..++...... +. .-+.+.+-..+.. .++..++.++++++.++.........-+-..+++.+..+...
T Consensus 432 ~~~~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~ 507 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK 507 (1049)
T ss_dssp HHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence 3444555554222211 11 1133444455543 567789999999999976443321111112345555554331
Q ss_pred ---CChhhHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHH------
Q 043950 289 ---NHKKSIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQI------ 356 (458)
Q Consensus 289 ---~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~------ 356 (458)
.+.+.++..++|+++.++. ..++... .+++.++..+.+.++.++..|++++.+++..+.....
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~ 582 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRE 582 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 1145566679999998874 2233222 2566778888888899999999999999985443221
Q ss_pred --HHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 357 --KYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 357 --~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
.++ ..++..+..++..-+.+-.....+++..++...+
T Consensus 583 ~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 583 SEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp SSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred CCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 111 1233344444444444445666777777776543
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.08 E-value=0.00028 Score=73.55 Aligned_cols=340 Identities=11% Similarity=0.053 Sum_probs=185.0
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCC
Q 043950 76 MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAADSPGCRNLVLREEA 152 (458)
Q Consensus 76 ~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 152 (458)
.+.+ -..++.++++++.++.+..+.. ...++.++..+ .++++.++..++|+++.++..-....+.+ ...
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHH
Confidence 3444 5789999999999998543311 12234444433 33578899999999999874311111222 357
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCCh-hhHH
Q 043950 153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL--DDEEVLSDACWTLSYLSYGTN-DKIQ 229 (458)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~-~~~~ 229 (458)
++.++..+ .+ +.++..|++++.+++......-......+++.+..++.. -+...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88888888 33 789999999999999754322223346666777777765 356788889999999885442 2222
Q ss_pred HHHHhCcHHHHHHHh----CCC-Cccchh---hHHHHHhHhhcCCh----------------------hhHHHHHhcCCh
Q 043950 230 VVIEAGVCRRLVELL----GHP-SPSVLT---PALWTVGNIVMGDD----------------------FQTQCIINHGAV 279 (458)
Q Consensus 230 ~~~~~~~i~~L~~ll----~~~-~~~~~~---~a~~~l~~l~~~~~----------------------~~~~~~~~~~~~ 279 (458)
..++ .+++.+...+ ..+ +++.+. ..+.+++.+...-. ..... +...++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence 2222 2344443333 222 333333 33444444432110 00111 122355
Q ss_pred HHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHH----hccCChhhHHHHHHHHHHhhc--CCC
Q 043950 280 PCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNV----LQDAEFDIKKEAALAIANATV--RGT 352 (458)
Q Consensus 280 ~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~l----l~~~~~~~~~~a~~~L~~l~~--~~~ 352 (458)
+.+..++... .+..+.+.++.++..++....+... ..++.++.. +..... ...++.+..++. +.+
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~---~~~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQ---ASALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCC---HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhCCC
Confidence 6665665432 1567888899998887642111111 123333333 222111 123344444433 211
Q ss_pred H---HHHHHHHHCCChHHHHhhcc---CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh
Q 043950 353 H---EQIKYLVREGCIKPLCDLLL---CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL 426 (458)
Q Consensus 353 ~---~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 426 (458)
. .....+.+ .++..+..++. ..+++++...+..+..++......-.. ....... .++.+...
T Consensus 758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~------~~~~~~~-----i~~~~~~~ 825 (963)
T 2x19_B 758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC------ERLDVKA-----VFQCAVLA 825 (963)
T ss_dssp TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC------TTSCHHH-----HHHHHHHH
T ss_pred cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC------CcccHHH-----HHHHHHHH
Confidence 1 11111111 12333333333 246899999999999999876643210 0000111 13344445
Q ss_pred hcCCChHHHHHHHHHHHHhcCC
Q 043950 427 KSHDNNGIREKAVKILETYWCG 448 (458)
Q Consensus 427 ~~~~~~~v~~~a~~~l~~~~~~ 448 (458)
..+++.++...+.+.+..++..
T Consensus 826 l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 826 LKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHHHHhc
Confidence 5688899999999999887653
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.98 E-value=0.0019 Score=66.79 Aligned_cols=389 Identities=7% Similarity=0.038 Sum_probs=198.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcCC---ChhhHHHHH
Q 043950 35 DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIASG---TSMNTNVVI 106 (458)
Q Consensus 35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~i~~~a~~~L~~l~~~---~~~~~~~~~ 106 (458)
.+...+..++++++.++.+. .+....-.-..+++.|+.++.+ +. ..++..++|+++.++.- .++...
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~~~~L~--- 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAHWNFLR--- 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHCHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhccHHHHH---
Confidence 57889999999999997654 2222222223467888888764 22 34556677999887651 222211
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh------hCCHHHHHHHhc---ccccHHHHHHHHHHHH
Q 043950 107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR------EEALIPLLAQLN---EHAKLSMLRIATWTLS 177 (458)
Q Consensus 107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~l~~~l~---~~~~~~~~~~a~~~l~ 177 (458)
.++..|+..+..+++.++..|++++.++|.. ++..+.. ...++.++..+. ..-++.-...+..+++
T Consensus 540 --~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~ 614 (1023)
T 4hat_C 540 --TVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1023)
T ss_dssp --HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456677777777899999999999999964 3333321 112444443332 2345566678888888
Q ss_pred HhhcCCCCCC--hhhhhhhHHHHHH----hhc----C----CC---hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHH
Q 043950 178 KLCKGKPQPP--FDQVRPALPALAQ----LIH----L----DD---EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRL 240 (458)
Q Consensus 178 ~l~~~~~~~~--~~~~~~~l~~l~~----ll~----~----~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L 240 (458)
.+....+... ......+++.+.. +.. + .| .......+.++..++..-......... .+++.+
T Consensus 615 ~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~ 693 (1023)
T 4hat_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNM 693 (1023)
T ss_dssp HHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHH
T ss_pred HHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHH
Confidence 8888754322 1122333333222 221 1 11 123344455555554321111111111 122222
Q ss_pred HHHhCC------------CC-----c------cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc----C----
Q 043950 241 VELLGH------------PS-----P------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH----N---- 289 (458)
Q Consensus 241 ~~ll~~------------~~-----~------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~----~---- 289 (458)
+.+.+. +. + .+++..+..+.......+.. + .+...+++++++.+-. .
T Consensus 694 l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~-~-~~~~~~~~~l~~~vl~dY~~~~~~~ 771 (1023)
T 4hat_C 694 LQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL-D-DVVKVLVEPLLNAVLEDYMNNVPDA 771 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH-H-HHHHHTHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH-H-HHHHHhHHHHHHHHHHHHHhCChhh
Confidence 222110 00 0 12223333333332212111 1 1223456666544422 1
Q ss_pred ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc---CChhhHHHHHHHHHHhhcCCCHHHHHH--HHHCCC
Q 043950 290 HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD---AEFDIKKEAALAIANATVRGTHEQIKY--LVREGC 364 (458)
Q Consensus 290 ~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~--l~~~~~ 364 (458)
.++.+-.-....+..+.....+....+.+. ++..-+++++. +.|+.|..-...+.++...+-...... -.-..+
T Consensus 772 r~~~vL~l~s~iv~~~~~~~~~~~~~il~~-vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~ 850 (1023)
T 4hat_C 772 RDAEVLNCMTTVVEKVGHMIPQGVILILQS-VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLF 850 (1023)
T ss_dssp CCHHHHHHHHHHHHHHGGGCHHHHHHHHHH-HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHH
Confidence 134444444444444443344555555553 56666677765 478888888888888766542221110 000114
Q ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHh----hhcCCChHHHHHHHH
Q 043950 365 IKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEG----LKSHDNNGIREKAVK 440 (458)
Q Consensus 365 l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----l~~~~~~~v~~~a~~ 440 (458)
++.++-.++++++++...+++.+..++........ ..+...|-+.-+...+.. +.+..+.-..+.-..
T Consensus 851 ~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~ 922 (1023)
T 4hat_C 851 VDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGN--------VPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQAL 922 (1023)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCS--------SHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHH
Confidence 55566677899999999999999999876664211 123444444444444443 234444433444444
Q ss_pred HHHHh
Q 043950 441 ILETY 445 (458)
Q Consensus 441 ~l~~~ 445 (458)
++..+
T Consensus 923 ~l~~l 927 (1023)
T 4hat_C 923 LLMKL 927 (1023)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 96
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.93 E-value=0.0017 Score=67.65 Aligned_cols=331 Identities=13% Similarity=0.052 Sum_probs=183.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 043950 33 WSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFL---MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG 109 (458)
Q Consensus 33 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~ 109 (458)
.+.+...+..++.++..++.+-.... ...++.+++.+ .+++ +.++..++++++.++..-.... ... ..
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~------~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~-~~l-~~ 529 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY------SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHP-VMI-NS 529 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC------CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCH-HHH-TT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh------hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCH-HHH-HH
Confidence 45677888889999999876542211 12233344333 3344 8899999999999886212222 222 37
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHH----HHhcc-cccHHHHHHHHHHHHHhhcCCC
Q 043950 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLL----AQLNE-HAKLSMLRIATWTLSKLCKGKP 184 (458)
Q Consensus 110 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~----~~l~~-~~~~~~~~~a~~~l~~l~~~~~ 184 (458)
+++.++..+.+ +.++..|++++.+++...+ ..+. ..++.++ ..+.. ..+...+..+..++..+....+
T Consensus 530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~---~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 530 VLPLVLHALGN--PELSVSSVSTLKKICRECK---YDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp THHHHHHHTTC--GGGHHHHHHHHHHHHHHTG---GGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHHHHHHH---HHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 78999988854 7899999999999996432 2221 2344444 34422 2356778888888888886543
Q ss_pred -CCChhhhhhhHHHHHHhhc----CC-ChHHHH---HHHHHHHHhccCCh----------------------hhHHHHHH
Q 043950 185 -QPPFDQVRPALPALAQLIH----LD-DEEVLS---DACWTLSYLSYGTN----------------------DKIQVVIE 233 (458)
Q Consensus 185 -~~~~~~~~~~l~~l~~ll~----~~-~~~~~~---~~~~~l~~l~~~~~----------------------~~~~~~~~ 233 (458)
.........+++.+...+. .. +++.+. ..+.+++.+...-. ..... ..
T Consensus 603 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 681 (963)
T 2x19_B 603 VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VL 681 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HH
Confidence 2222233455555444432 22 343333 34444444432100 01111 22
Q ss_pred hCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh----ccCChhhHHHHHHHHHHHhhc
Q 043950 234 AGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL----IHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 234 ~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll----~~~~~~~v~~~a~~~l~nl~~ 307 (458)
..+++.+..++.. .+..+.+.++.++..++....+... ..++.++..+ .....+ ..+++++.++.
T Consensus 682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~ 752 (963)
T 2x19_B 682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVH 752 (963)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHH
Confidence 2355555555543 3557888889888887643222211 2344444333 221122 23444444433
Q ss_pred --CC----HHHHHHHHHcCChHHHHHHhcc---CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCC-----ChHHHHhhcc
Q 043950 308 --GN----REQIQAVIDAGLIVPLVNVLQD---AEFDIKKEAALAIANATVRGTHEQIKYLVREG-----CIKPLCDLLL 373 (458)
Q Consensus 308 --~~----~~~~~~l~~~~~~~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~-----~l~~L~~ll~ 373 (458)
+. .+.+..+++ .++..++.++.. .+++++......+..++....... .... +++.+...+.
T Consensus 753 ~f~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~----~~~~~~~~~i~~~~~~~l~ 827 (963)
T 2x19_B 753 IFAHEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF----LCERLDVKAVFQCAVLALK 827 (963)
T ss_dssp HHTTCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG----GCTTSCHHHHHHHHHHHTT
T ss_pred HhCCCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH----cCCcccHHHHHHHHHHHcC
Confidence 11 122322222 134444444442 368999999999998886432211 1112 3445566677
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q 043950 374 CVDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 374 ~~~~~v~~~~~~~l~~l~~~~ 394 (458)
.++..+...+++.+..++...
T Consensus 828 ~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 828 FPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp CSCHHHHHHHHHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHHHHHHhcC
Confidence 889999999999999998653
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.77 E-value=0.0011 Score=68.29 Aligned_cols=306 Identities=10% Similarity=0.006 Sum_probs=168.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh--HHhhhCCHHH
Q 043950 78 EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN--LVLREEALIP 155 (458)
Q Consensus 78 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~ 155 (458)
.+ ++++..++.++.....- -....+++.+.++.+..++. +++++..|+.+|..+........+ .++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 78999999999999873 33455666678888888885 489999999999999865433222 1111100111
Q ss_pred HHHHhcc-cccHHHHHHHHHHHHHhh------cCCCC-CC-------hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950 156 LLAQLNE-HAKLSMLRIATWTLSKLC------KGKPQ-PP-------FDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220 (458)
Q Consensus 156 l~~~l~~-~~~~~~~~~a~~~l~~l~------~~~~~-~~-------~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 220 (458)
.+..+.. ..|.++.+..+..+..++ ...+. .. .....++++.+..++.+++.++...++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 1222211 456666554444433221 21121 11 133467888899999999888877776665554
Q ss_pred ccC----C-----hhhHHHHHHhCcHHHHHHHhCCCCc----------------cchhhHHHHHhHhhcCChhhHHH-HH
Q 043950 221 SYG----T-----NDKIQVVIEAGVCRRLVELLGHPSP----------------SVLTPALWTVGNIVMGDDFQTQC-II 274 (458)
Q Consensus 221 ~~~----~-----~~~~~~~~~~~~i~~L~~ll~~~~~----------------~~~~~a~~~l~~l~~~~~~~~~~-~~ 274 (458)
... . ......++ ..+++.+++-+..++. +.|......+-.++.-.++.... +.
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 421 0 11111122 1355555555554321 12222221122222212222111 11
Q ss_pred hcCChHHHHHHhc---cCChhhHHHHHHHHHHHhhcCCHHHHHHH-HHcC----ChHHHHHHhc-----cCChhhHHHHH
Q 043950 275 NHGAVPCLLALLI---HNHKKSIKKVACWTISNITAGNREQIQAV-IDAG----LIVPLVNVLQ-----DAEFDIKKEAA 341 (458)
Q Consensus 275 ~~~~~~~l~~ll~---~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~~----~~~~L~~ll~-----~~~~~~~~~a~ 341 (458)
+ .+.+.+.+.+. +. ++..++.+..+++.++.+........ -... +++.+..++. ..++.++..++
T Consensus 439 ~-~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~ 516 (980)
T 3ibv_A 439 S-AITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYM 516 (980)
T ss_dssp H-HHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHH
T ss_pred H-HHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 0 11222223332 23 67888999999999987532211100 0011 3455555554 56789999999
Q ss_pred HHHHHhhcCCC--HHHHHHHHHCCChHHHHh--hccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 342 LAIANATVRGT--HEQIKYLVREGCIKPLCD--LLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 342 ~~L~~l~~~~~--~~~~~~l~~~~~l~~L~~--ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
++++..+..-. ++.... +++.+++ .+.++++.|+.+|..++.++++....
T Consensus 517 ~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 517 EILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 99999876521 122111 3445555 55567888999999999999987654
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.0013 Score=57.40 Aligned_cols=191 Identities=15% Similarity=0.099 Sum_probs=126.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccH-HHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRI-EDVI--QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~--~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
..+| +-+.|.+.+...|..|+..+.++......... .... -....+.+-+.+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3455 66789999999999999999988765321111 1111 1134566777888888 8999999999998875221
Q ss_pred -----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950 100 -----MNTNVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT 173 (458)
Q Consensus 100 -----~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~ 173 (458)
.......-..+++.|+. .+.+..+.++..+..++..++...... .. .++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 11111122245677775 477888999999998888776433221 11 234455555 778899999888
Q ss_pred HHHHHhhcCC--CCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 043950 174 WTLSKLCKGK--PQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY 222 (458)
Q Consensus 174 ~~l~~l~~~~--~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~ 222 (458)
..|..+.... .... ......+++.+..++.+.|+.+|..+..++..+-.
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8888776542 1122 23345677788889999999999999999887754
No 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.55 E-value=0.0055 Score=63.29 Aligned_cols=345 Identities=12% Similarity=0.056 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHH-hCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhC
Q 043950 82 QLQYEAAWALTNIASGTSMNTNVVI-DHG----AVPIFVKLLA-----SPSDDVREQAVWALGNVAADSPGCRNLVLREE 151 (458)
Q Consensus 82 ~i~~~a~~~L~~l~~~~~~~~~~~~-~~~----~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 151 (458)
...+.++.+|+.++.+......... ... +++.+..++. .+.+.++..++++++..+..-.. ...
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~~ 531 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ESA 531 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CCT
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cch
Confidence 5678899999998885433211110 011 3455555554 46799999999999998743211 223
Q ss_pred CHHHHHHHhcc-----cccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-----CC---------------
Q 043950 152 ALIPLLAQLNE-----HAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL-----DD--------------- 206 (458)
Q Consensus 152 ~l~~l~~~l~~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----~~--------------- 206 (458)
.+++++..+.. ++++.++..|+.++.++|+.....-......++..+..++.. .+
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 611 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS 611 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence 56666666644 456789999999999999876433333345566655555552 11
Q ss_pred -hHHHHHHHHHHHHhccC---ChhhHHHHHHh---CcHHHHHHHhCCCCc--c---chhhHHHHHhHhhcCChhh-----
Q 043950 207 -EEVLSDACWTLSYLSYG---TNDKIQVVIEA---GVCRRLVELLGHPSP--S---VLTPALWTVGNIVMGDDFQ----- 269 (458)
Q Consensus 207 -~~~~~~~~~~l~~l~~~---~~~~~~~~~~~---~~i~~L~~ll~~~~~--~---~~~~a~~~l~~l~~~~~~~----- 269 (458)
.+-+.....+++.+... +.+......+. ..+..+-..+..... . -....+.+++.++.+-+..
T Consensus 612 ~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~ 691 (980)
T 3ibv_A 612 DFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEV 691 (980)
T ss_dssp THHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCC
T ss_pred CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 11345566666666632 22222222221 123333344433211 1 1224566778887653221
Q ss_pred -HHHHHhcCChHHHHHHhc--cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHH
Q 043950 270 -TQCIINHGAVPCLLALLI--HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAIA 345 (458)
Q Consensus 270 -~~~~~~~~~~~~l~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~ 345 (458)
....+ ..+.+.+...+. .. +..+|..++.++..+...-...+. ..+|.++..+-.. +..-....++.++
T Consensus 692 p~~~~f-~~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~~~~e~~~fL~l~~ 764 (980)
T 3ibv_A 692 AWLASF-NKASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDML-----PKVPQLISILLNSIDMNELVDVLSFIS 764 (980)
T ss_dssp SHHHHH-HHHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHCCTTTHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11111 134555555555 34 678999999999999875434322 4677777765432 4444566778888
Q ss_pred HhhcCCCHHHHHHHHH--CCChHHHHhhccCCC---------HHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHH
Q 043950 346 NATVRGTHEQIKYLVR--EGCIKPLCDLLLCVD---------PKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLV 414 (458)
Q Consensus 346 ~l~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~---------~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 414 (458)
.++.....+....+-+ .-++..+..++..+. ..+++.-+..+..++..+-..--. .+.| ...+
T Consensus 765 qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~----s~~n--~~~l 838 (980)
T 3ibv_A 765 QLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILF----TEEN--QVYF 838 (980)
T ss_dssp HHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGG----SHHH--HTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhc----CCcc--hHHH
Confidence 8765433222111111 123455555565432 224455555566666533111000 0000 0000
Q ss_pred HhcchHHHHHhh-hcCCChHHHHHHHHHHHHhcC
Q 043950 415 EEDEGFKKIEGL-KSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 415 ~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~ 447 (458)
...+..+..+ ...+++..++.|..++.++..
T Consensus 839 --~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~ 870 (980)
T 3ibv_A 839 --DPLINSILHFANLVGEPATQKSSIALVSKMVS 870 (980)
T ss_dssp --HHHHHHHHHHC-----CHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 0113444444 234677888899998888743
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.53 E-value=0.00031 Score=64.89 Aligned_cols=217 Identities=15% Similarity=0.104 Sum_probs=141.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHH-HHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED-VIQAGVVPRFVEFL---------MREDYPQLQYEAAWALTN 93 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~i~~L~~ll---------~~~~~~~i~~~a~~~L~~ 93 (458)
....|+..|-++..++|..|+.+|+.++...+....+. .......-.|+-++ ++.--.-||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 57788888899999999999999999876542110000 00002222222222 122223699999999999
Q ss_pred HcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950 94 IASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT 173 (458)
Q Consensus 94 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~ 173 (458)
+ ..-++. ..++..++..+..+.-++|..++-.|..+. +-..+ -.++++.++..| .+.+.+++..|+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL-~D~DDDVRAVAA 320 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL-SSPDEDIKLLSA 320 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc-CCcccHHHHHHH
Confidence 9 644433 233444445557788999999999999881 11111 134567777777 677889999999
Q ss_pred HHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccc
Q 043950 174 WTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD--EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSV 251 (458)
Q Consensus 174 ~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 251 (458)
.+|.-++ .......++..+...|.+.| ......++..|+.++..+... ..+...+|.|..++.++-.+|
T Consensus 321 etLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 321 ELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHH
T ss_pred HHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHH
Confidence 9999888 22345667777777666433 223344455555555443211 112378999999999999999
Q ss_pred hhhHHHHHhHhh
Q 043950 252 LTPALWTVGNIV 263 (458)
Q Consensus 252 ~~~a~~~l~~l~ 263 (458)
|.+++.++..+.
T Consensus 392 R~AVL~TL~tfL 403 (800)
T 3oc3_A 392 RTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0037 Score=54.45 Aligned_cols=188 Identities=11% Similarity=0.076 Sum_probs=124.9
Q ss_pred HHHHhCCCCccchhhHHHHHhHhhcCChhhH--HHHH--hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC------C
Q 043950 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQT--QCII--NHGAVPCLLALLIHNHKKSIKKVACWTISNITAG------N 309 (458)
Q Consensus 240 L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~--~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~------~ 309 (458)
+-.-+.+.++..|..|+..+..+....+... .... -....+.+...+.+. +..+...++.++..++.. .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5577889999999999999988765443221 1111 123566677788777 889999999999988752 1
Q ss_pred HHHHHHHHHcCChHHHHHH-hccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHH
Q 043950 310 REQIQAVIDAGLIVPLVNV-LQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLE 388 (458)
Q Consensus 310 ~~~~~~l~~~~~~~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~ 388 (458)
.......+ ..+++.|+.- +.+....++..+..++..++...... .. +++.+...+++.++.++..++..|.
T Consensus 93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11122222 2366777764 67777889989988888876543211 11 2566778889999999999999999
Q ss_pred HHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950 389 NILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 389 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 447 (458)
.++....... ......... .++.+..+.++.+++|+..|..++-.+|.
T Consensus 165 ~~l~~fg~~~------~~~k~~l~~-----i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTN------VNVQTFLPE-----LLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTT------CCHHHHHHH-----HGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCc------CCchhHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9987533211 011111222 24567778899999999999999877754
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.44 E-value=0.0021 Score=54.68 Aligned_cols=181 Identities=14% Similarity=0.044 Sum_probs=117.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC----ChhhHHHH
Q 043950 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG----DDFQTQCI 273 (458)
Q Consensus 198 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~----~~~~~~~~ 273 (458)
+...+-+.|..-+..++..|.......+......++- +++.+.-.+.+++..+...++.+|..+... +......-
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 4455556676666666666666543333221111111 234333344567777888888877776421 11111110
Q ss_pred HhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950 274 INHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 352 (458)
-.-++|.|+.-+-++ ...+|..+-.++..+.. ..+. .+++.++.-+.+.+..+|.+++..+..+.....
T Consensus 130 -a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 130 -VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp -HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 123688999999777 78899888877776654 2222 267778888889999999999999999975322
Q ss_pred HHHHHHHHHCCCh---HHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 353 HEQIKYLVREGCI---KPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 353 ~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
.. ....+ +.+..++.++|..|+..|+.++..++....
T Consensus 200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 11 23468 999999999999999999999998876543
No 103
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.41 E-value=0.014 Score=50.78 Aligned_cols=208 Identities=13% Similarity=0.085 Sum_probs=149.5
Q ss_pred HHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh----hhHHHHHh-cCChHHHHHHhccCChhhHHHHHHHHHH
Q 043950 229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD----FQTQCIIN-HGAVPCLLALLIHNHKKSIKKVACWTIS 303 (458)
Q Consensus 229 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~-~~~~~~l~~ll~~~~~~~v~~~a~~~l~ 303 (458)
+.+...+.+..|+..|..=+.+.|..+..+++++.+... .....+.. ..++..|+.... ++++--.+...|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence 446677899999999998888899999999999987543 23344442 223333333333 4455556666666
Q ss_pred HhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH--CCChHHHHhhccCCCHHHHH
Q 043950 304 NITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR--EGCIKPLCDLLLCVDPKIVT 381 (458)
Q Consensus 304 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~~~v~~ 381 (458)
.++.+ +.....+...+.+..+.+.++.++.++...|...+..+......-..+++.. ..+...+..++.+++.-++.
T Consensus 149 ecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 149 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 66654 4666778888888899999999999999999999999977643333333332 13466777788999988999
Q ss_pred HHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950 382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRV 450 (458)
Q Consensus 382 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 450 (458)
.++++|+.++-.-.+.. -....+.+..-++.+..|+.+++..++-.|-.+..-|.....
T Consensus 228 QSlKLLgelLldr~N~~----------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhCchHHH----------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99999999997655432 124555566678899999999999999888888766655443
No 104
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.38 E-value=0.011 Score=48.96 Aligned_cols=187 Identities=11% Similarity=0.096 Sum_probs=124.7
Q ss_pred ChHHHHHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHH-------hCCCCc----cchh-hHHHHHhHhhcCChhhHHH
Q 043950 206 DEEVLSDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVEL-------LGHPSP----SVLT-PALWTVGNIVMGDDFQTQC 272 (458)
Q Consensus 206 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~l-------l~~~~~----~~~~-~a~~~l~~l~~~~~~~~~~ 272 (458)
+++.++.|+..|+.--+..++....+..+ |.+..|++= +..+.- +-|. +|+..+..++ .+++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence 44457777766666444444444434433 555554322 222211 1122 2333344445 47788888
Q ss_pred HHhcCChHHHHHHhccCC----hhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950 273 IINHGAVPCLLALLIHNH----KKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA 347 (458)
Q Consensus 273 ~~~~~~~~~l~~ll~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 347 (458)
++++++.-.+..+|+... -..+|-.+..+++.+.. ++++.+..+.+.+++|...+.+..++.-.|.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 889988878888886542 24788899999999997 7889999999999999999999999999999999999998
Q ss_pred hcCCCHHHHHHHHHC--------CChHHHHh-hccCCCHHHHHHHHHHHHHHHHhch
Q 043950 348 TVRGTHEQIKYLVRE--------GCIKPLCD-LLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 348 ~~~~~~~~~~~l~~~--------~~l~~L~~-ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
... .....++... .++..++. +.+.+++.+.+.++.+..++.+...
T Consensus 173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence 863 3444443221 13333333 4457888999999999888876544
No 105
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.35 E-value=0.14 Score=53.05 Aligned_cols=297 Identities=13% Similarity=0.126 Sum_probs=158.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCC-hhhHHHHHh--CC
Q 043950 34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRF-VEFLMREDYPQLQYEAAWALTNIASGT-SMNTNVVID--HG 109 (458)
Q Consensus 34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~--~~ 109 (458)
+.++++...++.++..+++= -....+++.++++.+ ..++. + ++++..|+.||..+.... +++.+.+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45677878888888888663 245677888888888 46663 3 789999999999987642 222222211 12
Q ss_pred ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhcCC-------CchhhHHhhhCCHHHHHHHhcccccHHHH
Q 043950 110 AVPIFVKLL-------------ASPSDDVREQAVWALGNVAADS-------PGCRNLVLREEALIPLLAQLNEHAKLSML 169 (458)
Q Consensus 110 ~i~~L~~ll-------------~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 169 (458)
.+..+..++ ...+++.....+..+..+.... |..+..+.. ++..++... ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 222222222 1122344444555555544221 111111111 233344333 45677887
Q ss_pred HHHHHHHHHhhc----CCC-----C----------C--ChhhhhhhHHHHHH----hhcCC-------------------
Q 043950 170 RIATWTLSKLCK----GKP-----Q----------P--PFDQVRPALPALAQ----LIHLD------------------- 205 (458)
Q Consensus 170 ~~a~~~l~~l~~----~~~-----~----------~--~~~~~~~~l~~l~~----ll~~~------------------- 205 (458)
+.+...-..|.. ..+ . . ......+++..+.. -+..+
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 777655444432 111 0 0 11112333333333 32211
Q ss_pred Ch------HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhh-HHHHHhc
Q 043950 206 DE------EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQ-TQCIINH 276 (458)
Q Consensus 206 ~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~ 276 (458)
|. +....++..+.++- ..+... -+.+.+.+.+.. .++...+.++|+++.++..-.+. -+.++ .
T Consensus 449 d~~~~~ly~~mrd~L~~lt~l~--~~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p 520 (1073)
T 3gjx_A 449 DTDSINLYKNMRETLVYLTHLD--YVDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-V 520 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC--HHHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-H
T ss_pred hcchHHHHHHHHHHHHHHhcCC--HHHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-H
Confidence 11 11222222222221 111111 134455555544 35778899999999997543322 22222 3
Q ss_pred CChHHHHHHhccCC--h--hhHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 277 GAVPCLLALLIHNH--K--KSIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 277 ~~~~~l~~ll~~~~--~--~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
.+++.|+.+...+. + ..++...+|+++.... .+++.... ++..+++.+...++.++..|+.++..++.
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 46777777765441 2 2355566789988764 33443332 55677788888899999999999999987
Q ss_pred CCC
Q 043950 350 RGT 352 (458)
Q Consensus 350 ~~~ 352 (458)
.+.
T Consensus 596 ~C~ 598 (1073)
T 3gjx_A 596 KCR 598 (1073)
T ss_dssp HTG
T ss_pred HHH
Confidence 654
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.34 E-value=0.0015 Score=60.55 Aligned_cols=244 Identities=13% Similarity=0.072 Sum_probs=157.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhh--C--------CCCHHHHHHHHHHHH
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDH--GAVPIFVKLL--A--------SPSDDVREQAVWALG 134 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll--~--------~~~~~~~~~a~~~L~ 134 (458)
+...|+.-|-++.| ++|.-|+.+|..+.............. ...-.++.++ . ..-..||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~W-EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEW-YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcch-hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 55677777788886 999999999998865221100000111 1122222222 1 123689999999999
Q ss_pred HhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHH
Q 043950 135 NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDAC 214 (458)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~ 214 (458)
.+ ..-+.. ..++..++..+ ..+.-+++..++-.+.++..--. ...++++.++..|.+.|.+++..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence 98 544432 23455555444 56678898889999999821111 1688899999999999999999999
Q ss_pred HHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC--ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChh
Q 043950 215 WTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKK 292 (458)
Q Consensus 215 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 292 (458)
.+|.-++ . ++... .++..+...|.+-+ ..-....+..|+.|+...... ..+...+|.|..++.++ -.
T Consensus 321 etLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999998 2 22222 24566666666532 122334456677776654311 12347899999999999 99
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950 293 SIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIA 345 (458)
Q Consensus 293 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 345 (458)
.||..+..++..+. ....... .+..++-.++.+++..+..++.
T Consensus 390 SVR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998887 2222221 2233456678888888877774
No 107
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.33 E-value=0.016 Score=50.34 Aligned_cols=200 Identities=13% Similarity=0.085 Sum_probs=139.8
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch----hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC----RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
+...+.+..|+..+..-+-+.|..+..++.++.+..... .+.+.. -...+..++..-.++++.-.+-..|+...
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 445578899999998888899999999999998765432 222222 12222222222234555566666676666
Q ss_pred cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHh---CcHHHHHHHhCCCCccchhhHHH
Q 043950 181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA---GVCRRLVELLGHPSPSVLTPALW 257 (458)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~~ 257 (458)
++..-.......+.+-.+...+..++=++...|..++..+..........++.. .++...-+++.+++.-.++.++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 653322223334566677788888899999999999988876555444444443 46777889999999999999999
Q ss_pred HHhHhhcCC--hhh-HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 258 TVGNIVMGD--DFQ-TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 258 ~l~~l~~~~--~~~-~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
.|+.+.... ... .+.+-+..-+..++.+|++. +..++.+|..++--++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999997642 222 23333556799999999999 99999999999988876
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.33 E-value=0.068 Score=55.36 Aligned_cols=308 Identities=12% Similarity=0.111 Sum_probs=163.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHh
Q 043950 71 FVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAADS-PGCRNLVL 148 (458)
Q Consensus 71 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 148 (458)
+..++..+..+++...++.+++.+.. .-....+++.+.++.+ ..++ .+++++..|+.+|..+.... +...+.+.
T Consensus 211 l~~iL~~~~~~~lv~~~L~~L~~~~s--WI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~ 286 (1073)
T 3gjx_A 211 CQFVMENSQNAPLVHATLETLLRFLN--WIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE 286 (1073)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTT--TSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHH--hcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence 33444444447888889999999887 3335567788888887 4676 57889999999999988643 22222221
Q ss_pred hhCCHHHHHH----Hh------------cccccHHHHHHHHHHHHHhhcCCC-----C-CChhhhhhhHHHHHHhhcCCC
Q 043950 149 REEALIPLLA----QL------------NEHAKLSMLRIATWTLSKLCKGKP-----Q-PPFDQVRPALPALAQLIHLDD 206 (458)
Q Consensus 149 ~~~~l~~l~~----~l------------~~~~~~~~~~~a~~~l~~l~~~~~-----~-~~~~~~~~~l~~l~~ll~~~~ 206 (458)
. ....++. .+ ....+++.....+.++..+.+... . ........++..++.+...+|
T Consensus 287 ~--lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d 364 (1073)
T 3gjx_A 287 T--LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEE 364 (1073)
T ss_dssp H--HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSC
T ss_pred H--HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCc
Confidence 1 1111111 11 122344566666666665443320 0 011222334444566666778
Q ss_pred hHHHHHHHHHHHHhcc----CC------------------hhhH---HHHHHhCcHHHHHHHhCCCCc----------cc
Q 043950 207 EEVLSDACWTLSYLSY----GT------------------NDKI---QVVIEAGVCRRLVELLGHPSP----------SV 251 (458)
Q Consensus 207 ~~~~~~~~~~l~~l~~----~~------------------~~~~---~~~~~~~~i~~L~~ll~~~~~----------~~ 251 (458)
.++...++..=..+.. .. +.+. ..+. ..+...++.-+..+++ .+
T Consensus 365 ~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~-~~L~~vlI~~m~~P~ev~i~e~e~ge~~ 443 (1073)
T 3gjx_A 365 TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVL-SKVRLLMVSRMAKPEEVLVVENDQGEVV 443 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHH-HHHHHHHHHTCCCSCCEEEEECSSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHH-HHHHHHHHHhcCCCccccccCcccchHH
Confidence 7777665543222221 00 0111 1111 1233444444554331 11
Q ss_pred hh------------hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcC-CHH-HHHHH
Q 043950 252 LT------------PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAG-NRE-QIQAV 316 (458)
Q Consensus 252 ~~------------~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~-~~~-~~~~l 316 (458)
|+ ..-.++..++.-.......+ ..+.+.+.+..+ .++.....++|+++.++.. .++ ....+
T Consensus 444 re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L 519 (1073)
T 3gjx_A 444 REFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 519 (1073)
T ss_dssp EEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH
Confidence 11 01112223322122221111 234444444432 2578899999999999863 322 22223
Q ss_pred HHcCChHHHHHHhccC---Chh--hHHHHHHHHHHhhcC--CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHH
Q 043950 317 IDAGLIVPLVNVLQDA---EFD--IKKEAALAIANATVR--GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLEN 389 (458)
Q Consensus 317 ~~~~~~~~L~~ll~~~---~~~--~~~~a~~~L~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~ 389 (458)
.+ +++.|+.+.... +.+ ++...+++++..... ..+++.+. ++..|++.+...++.|+..|+.++..
T Consensus 520 p~--vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~ 592 (1073)
T 3gjx_A 520 VT--VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIK 592 (1073)
T ss_dssp HH--HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred HH--HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33 666777766543 223 444455777776543 12333333 57778888888899999999999999
Q ss_pred HHHhchh
Q 043950 390 ILKVGEA 396 (458)
Q Consensus 390 l~~~~~~ 396 (458)
++.....
T Consensus 593 i~~~C~~ 599 (1073)
T 3gjx_A 593 IAQKCRR 599 (1073)
T ss_dssp HHHHTGG
T ss_pred HHHHHHH
Confidence 9876554
No 109
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.31 E-value=0.0059 Score=51.87 Aligned_cols=178 Identities=11% Similarity=0.020 Sum_probs=119.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhh----cCCC
Q 043950 112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLC----KGKP 184 (458)
Q Consensus 112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~----~~~~ 184 (458)
+-+...+.+.+..-+..++..|.......+. ..+. .++.+++.+. .+++..+...++.++..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555556666666677776665443221 1111 2333333221 3567778788877777653 3222
Q ss_pred CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950 185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264 (458)
Q Consensus 185 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~ 264 (458)
.........++|.++.-+.++...++..+-.++..+....+ ...+++.+..-+++.++..|..++..++.+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 33333447789999999999999999888887766653111 12367788888899999999999999988865
Q ss_pred CChhhHHHHHhcCCh---HHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 265 GDDFQTQCIINHGAV---PCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~---~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
.+... ....+ +.+..++.+. |..||..|..++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 33222 23467 9999999998 99999999999987764
No 110
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.18 E-value=0.05 Score=47.24 Aligned_cols=295 Identities=14% Similarity=0.111 Sum_probs=171.2
Q ss_pred HHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHH
Q 043950 133 LGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLS 211 (458)
Q Consensus 133 L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~ 211 (458)
|.++..++....+-++..+++..+.... +-++.++.+..+..|...+... .....-....+|.++..+. +++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 4455555556666677888888888888 5666788888998888877553 2333344778888887776 78899999
Q ss_pred HHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-------CccchhhHHHHHhHhhcC-------------------
Q 043950 212 DACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-------SPSVLTPALWTVGNIVMG------------------- 265 (458)
Q Consensus 212 ~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~~~~~a~~~l~~l~~~------------------- 265 (458)
.....++|+..+.....+..+..|.+..|.+.+... +..-+..||.+++|-.+.
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999988888888888889999988876431 222344455555543311
Q ss_pred C---hhhHHHHHhcCChHHHHHHhccCC-----hhhHHHHHHHHHHHhhcCC---HHHH----HHHHHcCChHHHHHHhc
Q 043950 266 D---DFQTQCIINHGAVPCLLALLIHNH-----KKSIKKVACWTISNITAGN---REQI----QAVIDAGLIVPLVNVLQ 330 (458)
Q Consensus 266 ~---~~~~~~~~~~~~~~~l~~ll~~~~-----~~~v~~~a~~~l~nl~~~~---~~~~----~~l~~~~~~~~L~~ll~ 330 (458)
. .++...+++..+++.++.+|+-+. --+.|......+.-+.+.. .+.. +.+-+.+.+..++-.+.
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s 503 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS 503 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence 1 223344556678888888887541 1244554444443333311 0000 00112233444443332
Q ss_pred c-----CC-------hhhHHHHHHHHHHhhcCC-CHHH-HHHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhc
Q 043950 331 D-----AE-------FDIKKEAALAIANATVRG-THEQ-IKYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 331 ~-----~~-------~~~~~~a~~~L~~l~~~~-~~~~-~~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~~~~ 394 (458)
. .+ ..+.+.+...|..+.+.+ ++.+ ...+.. ++.=.+++++. .|.....++.+=.++++..
T Consensus 504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~Ys---IsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHc 580 (619)
T 3c2g_A 504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYS---IDCPLNLLNGNQVKPTFIHNVLVVCDKILEHC 580 (619)
T ss_dssp HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTTT---SCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhheee---ccCchhhhcccccChHHHHHHHHHHHHHHHhC
Confidence 1 11 123344555555555443 2222 111111 22223445432 4556566666666666544
Q ss_pred hhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950 395 EAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 447 (458)
+-.. ..- .-.-..+.-+.+|.|+++.+.|..++.+|-+
T Consensus 581 P~~A-------------d~W--~i~r~tle~l~NHsNsDIa~aasSLL~rfP~ 618 (619)
T 3c2g_A 581 PTRA-------------DIW--TIDRPMLEGLTNHRNSDIAKAANSLLSRFPE 618 (619)
T ss_dssp TTHH-------------HHS--CCCHHHHHHHHTCSSHHHHHHHHHHHTTSCC
T ss_pred cchh-------------ccc--eechHHHHHHhcCCCchHHHHHHHHHHhCCC
Confidence 3321 110 0113456677899999999999999987743
No 111
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.93 E-value=0.051 Score=45.11 Aligned_cols=189 Identities=14% Similarity=0.049 Sum_probs=120.4
Q ss_pred ccchhhHHHHHhHhhcCChhhHHHHHh-cCChHHHHHHh-------ccCC---hhhHH-HHHHHHHHHhhcCCHHHHHHH
Q 043950 249 PSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALL-------IHNH---KKSIK-KVACWTISNITAGNREQIQAV 316 (458)
Q Consensus 249 ~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll-------~~~~---~~~v~-~~a~~~l~nl~~~~~~~~~~l 316 (458)
++.|+.|+.-|+.=-...++..-.++. .|.+..+++=+ ..+. ...-| -.|...+..++++ ++.+..+
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~F 93 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSAF 93 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHHH
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhHH
Confidence 345777776666544333444344443 34444443222 1110 11112 2344444555554 5778888
Q ss_pred HHcCChHHHHHHhccC-----ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950 317 IDAGLIVPLVNVLQDA-----EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL 391 (458)
Q Consensus 317 ~~~~~~~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~ 391 (458)
++..+--.|..+++.. .+.+|-.++.+++.+++.++++...++.+.+.++...+.++..++-.+..|..++.+|+
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 8888777777777644 35789999999999999999999999999999999999999999988889999999999
Q ss_pred HhchhhcccCCCCCchhHHHHHHHh-cchH-HHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 392 KVGEAEKNTGSTIGDVNQYARLVEE-DEGF-KKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
..+......+.. .+.|.. ...+ +.+..+..++++++-+...+...+.
T Consensus 174 ~dd~GL~YiC~t-------~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 174 LDDTGLAYICQT-------YERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp HSHHHHHHHTSS-------HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHcc-------HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 888776655432 111111 1112 2333556777777655544443333
No 112
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.76 E-value=0.025 Score=47.46 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=113.5
Q ss_pred hhhHHHHHhcCChHHHHHHhccC----------ChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHHHhccCChh
Q 043950 267 DFQTQCIINHGAVPCLLALLIHN----------HKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVNVLQDAEFD 335 (458)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~ll~~~----------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~ 335 (458)
....+.+ ..+++..|+..|..- .+......+..+|..+.. +...+..++. .+.+..+...+.++++.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 3444555 345666666655421 144566778888888764 4455666664 55788888888888999
Q ss_pred hHHHHHHHHHHhhcCCC----HH-HHHH------HHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCC
Q 043950 336 IKKEAALAIANATVRGT----HE-QIKY------LVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGST 403 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~----~~-~~~~------l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~ 403 (458)
++..++..|..++...+ .. .... ..+..-+..+++.++ +.+.+.+..++..+..++...++.+
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~----- 186 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD----- 186 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-----
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-----
Confidence 99999988887776542 21 1111 123345667777776 4566888889988888887765543
Q ss_pred CCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHH
Q 043950 404 IGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441 (458)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~ 441 (458)
....++..|...|..+.+..+...+++++..+....
T Consensus 187 --~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~f 222 (233)
T 2f31_A 187 --FRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF 222 (233)
T ss_dssp --HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHHH
Confidence 345678888899999999999888888887665443
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.74 E-value=0.00032 Score=59.23 Aligned_cols=185 Identities=15% Similarity=0.108 Sum_probs=123.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCC
Q 043950 73 EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEA 152 (458)
Q Consensus 73 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 152 (458)
.++.+++ +.+|..++..+ ....+..+++++++.||..++..|. +
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------~----------- 100 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------R----------- 100 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------S-----------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------H-----------
Confidence 4556777 89999888742 1345777888899999998885421 0
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950 153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI 232 (458)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 232 (458)
+.+..++ .++++.++..+... +. .+.+..+++++++.++..+... +.
T Consensus 101 -~~L~~ll-~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 101 -EQLSALM-FDEDREVRITVADR---LP--------------LEQLEQMAADRDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp -GGGGGTT-TCSCHHHHHHHHHH---SC--------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred -HHHHHHH-cCCCHHHHHHHHHh---CC--------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence 1233333 78888888887763 21 0134566788889999888763 11
Q ss_pred HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950 233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ 312 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 312 (458)
.+.+..+++++++.||..++..+. -+.+..++.++ ++.||..++..+
T Consensus 148 ----~~~l~~l~~D~d~~VR~~aa~~l~------------------~~ll~~ll~D~-d~~VR~aaa~~l---------- 194 (244)
T 1lrv_A 148 ----PGRLFRFMRDEDRQVRKLVAKRLP------------------EESLGLMTQDP-EPEVRRIVASRL---------- 194 (244)
T ss_dssp ----GGGGGGTTTCSCHHHHHHHHHHSC------------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence 123446677888889988877511 12344566777 889999888652
Q ss_pred HHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHH
Q 043950 313 IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGL 387 (458)
Q Consensus 313 ~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l 387 (458)
..+.|..++.+++..|+..++..+. .+.|..+ +++++.|+..+...|
T Consensus 195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1356777788899999998888753 2345556 888888888776543
No 114
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.74 E-value=0.00055 Score=57.83 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=36.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 043950 30 AGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG 109 (458)
Q Consensus 30 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~ 109 (458)
+++.++++.++..++..+. ...|..++++++ +.+|..++..+ .
T Consensus 57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L---~-------------- 99 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRL---P-------------- 99 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence 4457788888888876431 122455556666 66666666431 0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHH
Q 043950 110 AVPIFVKLLASPSDDVREQAVW 131 (458)
Q Consensus 110 ~i~~L~~ll~~~~~~~~~~a~~ 131 (458)
.+.|..++++++..+|..++.
T Consensus 100 -~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 100 -REQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp -SGGGGGTTTCSCHHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHH
Confidence 134555555666666655554
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.65 E-value=0.19 Score=46.07 Aligned_cols=249 Identities=13% Similarity=0.049 Sum_probs=145.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHH
Q 043950 120 SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALA 199 (458)
Q Consensus 120 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~ 199 (458)
++++..++.|...+..+..+-|..++. ++..++.++ .+.|..++..|+..|..+|.+ .....+...|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 357899999999999998887776554 677899999 888899999999999999976 33688888999
Q ss_pred HhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC-ChhhHHHHHhcCC
Q 043950 200 QLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG-DDFQTQCIINHGA 278 (458)
Q Consensus 200 ~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~ 278 (458)
++|+++++.-...+-.+|..+...++. +.+..+...+..+++.+|+.++..|..-... ..+....-.+.-+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 999999887777777777766644432 2233344444445678888888887443321 1111111222234
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHh------ccCChhhHHHHHHHHHHhhc--
Q 043950 279 VPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVL------QDAEFDIKKEAALAIANATV-- 349 (458)
Q Consensus 279 ~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll------~~~~~~~~~~a~~~L~~l~~-- 349 (458)
+..+.+.|++- ...--.....+|..+-. .+....+.+++ .+.+.. ...|.+.....+.++..-.-
T Consensus 179 ~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~-----ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F 252 (507)
T 3u0r_A 179 LTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE-----LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF 252 (507)
T ss_dssp HHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH-----HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH-----HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 55566666443 22222223333433332 34444444332 233321 12355555555555544432
Q ss_pred --C-CCHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhch
Q 043950 350 --R-GTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 350 --~-~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~ 395 (458)
+ .+..+..++.+. +++.+-.+-.. +.++.+...++++..+..+..
T Consensus 253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 1 245666665554 56655444332 111244455666666655444
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.32 E-value=0.26 Score=40.64 Aligned_cols=144 Identities=16% Similarity=0.023 Sum_probs=104.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhc-CCCchhh
Q 043950 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAA-DSPGCRN 145 (458)
Q Consensus 68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 145 (458)
++....+.+++. .++|..|+..|+.. ...+ ..++.+.. +....+-.|++.+..++..++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 455556667777 69999999999888 3111 23667776 5556888999999999999984 33331
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN 225 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 225 (458)
.++.+.... .+++..+++.++..+.--+.. + ........++|.+-.+..+++.-|+..+.+.|..++..++
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 455566566 888999999998887654443 1 2233346678888888889999999999999999998888
Q ss_pred hhHHHHHH
Q 043950 226 DKIQVVIE 233 (458)
Q Consensus 226 ~~~~~~~~ 233 (458)
+....+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665544
No 117
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.20 E-value=0.058 Score=48.96 Aligned_cols=163 Identities=14% Similarity=0.127 Sum_probs=114.1
Q ss_pred ChhhHHHHHhcCChHHHHHHhcc----------CChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHHHhccCCh
Q 043950 266 DDFQTQCIINHGAVPCLLALLIH----------NHKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVNVLQDAEF 334 (458)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~ll~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~ 334 (458)
.....+.+. .+++..|+.+|.. ..+......+..+|..+.. +...+..++. ...+..+...+.+..+
T Consensus 99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~ 176 (383)
T 3eg5_B 99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVP 176 (383)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCch
Confidence 345556565 5667777777742 1134667778888888864 3455666664 5678899999999999
Q ss_pred hhHHHHHHHHHHhhcCCC----HH-HHHH------HHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhchhhcccCC
Q 043950 335 DIKKEAALAIANATVRGT----HE-QIKY------LVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGEAEKNTGS 402 (458)
Q Consensus 335 ~~~~~a~~~L~~l~~~~~----~~-~~~~------l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 402 (458)
.++..++..|..++.... .. .... ..+..-+..+++.++. .+.+....++..+..++...+...
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~---- 252 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD---- 252 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH----
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH----
Confidence 999999999988887543 11 1111 1234557788888876 577888888988888887665543
Q ss_pred CCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHH
Q 043950 403 TIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREK 437 (458)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~ 437 (458)
....++..|...|..+.+..+...+++++..+
T Consensus 253 ---~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 253 ---FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp ---HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred ---HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 34556788889999999999887778776544
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.20 E-value=0.099 Score=43.07 Aligned_cols=144 Identities=9% Similarity=-0.013 Sum_probs=101.7
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH-hhcCCChHHHHHHHHHHHHhcc-CChhhHHHH
Q 043950 154 IPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQ-LIHLDDEEVLSDACWTLSYLSY-GTNDKIQVV 231 (458)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~ 231 (458)
..+...|.+++..+++..|+..+..+ . .....++.+.. +.......|++.+..++..++. ..++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 35555555677778898999988877 2 12567888877 6667889999999999998874 3332
Q ss_pred HHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH
Q 043950 232 IEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE 311 (458)
Q Consensus 232 ~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 311 (458)
..++.+.....+++..+|+.|...+.-.+........ ...+++.+-.+..++ +.-||+..+|.|..++..+|+
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d---p~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN---PNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC---HHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC---HHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHH
Confidence 2567888999999999999998887544432110000 012355555555555 889999999999999999988
Q ss_pred HHHHHHH
Q 043950 312 QIQAVID 318 (458)
Q Consensus 312 ~~~~l~~ 318 (458)
-...+++
T Consensus 212 ~V~~~~~ 218 (240)
T 3l9t_A 212 LVKIELK 218 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 119
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.97 E-value=2.1 Score=45.49 Aligned_cols=300 Identities=10% Similarity=0.016 Sum_probs=168.1
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCC----
Q 043950 25 LPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLM-REDYPQLQYEAAWALTNIASG---- 97 (458)
Q Consensus 25 i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~i~~~a~~~L~~l~~~---- 97 (458)
+..+++.+.++ +...+..|-..|.++-... .....+...|. .+.++.+|..|+..|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 44445444443 6778888888888774331 13344444333 333379999999999987642
Q ss_pred -ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950 98 -TSMNTNVVIDHGAVPIFVKLLAS---PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT 173 (458)
Q Consensus 98 -~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~ 173 (458)
+++.+..+. ..+++.+...... ....++...+.++..++...-.. .. .+.++.++..+.. ++.....++
T Consensus 82 l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~--~W--p~ll~~L~~~~~~--~~~~~e~~L 154 (1204)
T 3a6p_A 82 MSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ--HW--PDMLIELDTLSKQ--GETQTELVM 154 (1204)
T ss_dssp SCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT--TC--TTHHHHHHHHHHT--CHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc--cc--hHHHHHHHHHhcC--CHHHHHHHH
Confidence 233333332 2334444443211 45889999999999887442110 01 2356777777733 445577788
Q ss_pred HHHHHhhcCC---CCCChhh-------h----hhhHHHHHHhhcC-------------------CChHHHHHHHHHHHHh
Q 043950 174 WTLSKLCKGK---PQPPFDQ-------V----RPALPALAQLIHL-------------------DDEEVLSDACWTLSYL 220 (458)
Q Consensus 174 ~~l~~l~~~~---~~~~~~~-------~----~~~l~~l~~ll~~-------------------~~~~~~~~~~~~l~~l 220 (458)
.+|..++... ....... . ..+++.+..++.. .+..+...++.++.+.
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 8888886542 1111110 1 1333334444432 1234666777777766
Q ss_pred ccCChhhHHHHHHhC--cHHHHHHHhCCCCccchhhHHHHHhHhhcCC--hhhHHHHHhc---CChHHHHHHhc------
Q 043950 221 SYGTNDKIQVVIEAG--VCRRLVELLGHPSPSVLTPALWTVGNIVMGD--DFQTQCIINH---GAVPCLLALLI------ 287 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~---~~~~~l~~ll~------ 287 (458)
...-+. ..+.+.. +++.+..++. ++.++..|+.+|..++... +.....++.. ..+..++..+.
T Consensus 235 l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~ 310 (1204)
T 3a6p_A 235 IDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGG 310 (1204)
T ss_dssp TTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS
T ss_pred HhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC
Confidence 544331 2233332 7777777665 4678999999999998744 2222222211 11234444432
Q ss_pred -cCChhhHHHHHHHHHHHhhcCCHHHHHHHHH-----------cCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950 288 -HNHKKSIKKVACWTISNITAGNREQIQAVID-----------AGLIVPLVNVLQDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 288 -~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-----------~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 350 (458)
.+.+.++.+..+..+..+.. ....++. .++++.++.+...++..+-..++..+..+...
T Consensus 311 ~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 311 LVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11145666777777777652 2222222 13577777777787888888887777766654
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.97 E-value=0.3 Score=40.88 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHHcCCChhhHHHHHh-CCChH
Q 043950 44 TTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR----------EDYPQLQYEAAWALTNIASGTSMNTNVVID-HGAVP 112 (458)
Q Consensus 44 ~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~ 112 (458)
+..|+-.+...+....+.+ ..+++..|+..|.. ..+.+.+..++.||..+.. +....+.+.. .+.+.
T Consensus 22 L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~ 99 (233)
T 2f31_A 22 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGIL 99 (233)
T ss_dssp HHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHH
T ss_pred HHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHH
Confidence 3444433343323445555 45677777777742 1125778899999999988 5666666665 46789
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCC-ch-hhHHhh----------hCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 113 IFVKLLASPSDDVREQAVWALGNVAADSP-GC-RNLVLR----------EEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 113 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~~----------~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
.+...+.++++.++..++..|..+|.... .. ...+.+ ..-+..++..+..+.+.+.+..++..+..+.
T Consensus 100 ~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li 179 (233)
T 2f31_A 100 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 179 (233)
T ss_dssp HHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986553 22 222221 1234455555544455566666666666665
Q ss_pred cCC
Q 043950 181 KGK 183 (458)
Q Consensus 181 ~~~ 183 (458)
...
T Consensus 180 ~~~ 182 (233)
T 2f31_A 180 TPA 182 (233)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 121
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.94 E-value=0.7 Score=40.30 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=110.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC
Q 043950 211 SDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH 290 (458)
Q Consensus 211 ~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 290 (458)
..+...+ ++.-++.+.+.-++..+++..+...+..++.++.+..+..|...+....-.... -...+|.++..+.-.+
T Consensus 261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCC
T ss_pred HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCC
Confidence 3344444 444466667777999999999999999999999999999998886533211111 1246777888777655
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-------ChhhHHHH-------HHHHHHhhc------C
Q 043950 291 KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-------EFDIKKEA-------ALAIANATV------R 350 (458)
Q Consensus 291 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-------~~~~~~~a-------~~~L~~l~~------~ 350 (458)
+.++.......++|...+.....+.-+.+|.++.|...+... +..-++.| ++++.|+.- +
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 889999999999999999877777777899999999887532 22233444 444444431 1
Q ss_pred C--------CHHHHHHHHHCCChHHHHhhccC
Q 043950 351 G--------THEQIKYLVREGCIKPLCDLLLC 374 (458)
Q Consensus 351 ~--------~~~~~~~l~~~~~l~~L~~ll~~ 374 (458)
+ ++.+.-.+++.++++.|..+++-
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~ 449 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSC 449 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 12333444566777788887763
No 122
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.62 E-value=0.72 Score=41.86 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=110.3
Q ss_pred hhHHHHHhcCChHHHHHHhcc----------CChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHHHhccCChhh
Q 043950 268 FQTQCIINHGAVPCLLALLIH----------NHKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVNVLQDAEFDI 336 (458)
Q Consensus 268 ~~~~~~~~~~~~~~l~~ll~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~ 336 (458)
.+.+.+. .+++..|+..|.. ..+......+..+|..+.. +...+..++. .+.+..+...+.+.++.+
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~ 116 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM 116 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 4444443 3555555555532 1144667778888888764 4455666654 567888888898889999
Q ss_pred HHHHHHHHHHhhcCCC----HH-HHH------HHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCC
Q 043950 337 KKEAALAIANATVRGT----HE-QIK------YLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTI 404 (458)
Q Consensus 337 ~~~a~~~L~~l~~~~~----~~-~~~------~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~ 404 (458)
+..++..|..++.... .. ... ...+..-+..+++.+. +.+.+....++..+..++...+...
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~------ 190 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------ 190 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH------
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH------
Confidence 9999888887776543 11 111 1123345667777776 5567888889988988888766543
Q ss_pred CchhHHHHHHHhcchHHHHHhhhcCCChHHHHHH
Q 043950 405 GDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKA 438 (458)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a 438 (458)
....++..|...|..+.+..+....++++....
T Consensus 191 -~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 191 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred -HHHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence 355678889999999999999888888876553
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.42 E-value=1.6 Score=40.13 Aligned_cols=178 Identities=16% Similarity=0.046 Sum_probs=121.6
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
++...+..++...+. +.....-|+..+.++...- ++... ..+..++.++.+++ ..+|.+|++.|-.+|.+
T Consensus 26 ~~~~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~F-P~l~~-----~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~-- 95 (507)
T 3u0r_A 26 QHKDAYQVILDGVKG-GTKEKRLAAQFIPKFFKHF-PELAD-----SAINAQLDLCEDED-VSIRRQAIKELPQFATG-- 95 (507)
T ss_dssp GGHHHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGC-GGGHH-----HHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT--
T ss_pred ccHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC-hhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhhHHHhhh--
Confidence 344456666766555 5888888999999987664 34333 35889999999999 89999999999999996
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950 100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l 179 (458)
+....+ ..+|.++|++.++.-...+-.+|..+...++. +.+..++..+.. +++.++..++..|..-
T Consensus 96 ~~i~ki-----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~-~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 96 ENLPRV-----ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQ-GEDIVRERAIKFLSTK 161 (507)
T ss_dssp TCHHHH-----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred hhhhhH-----HHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcc-cchHHHHHHHHHHHHH
Confidence 554444 68999999998888777788888777544432 356677777744 5678888888887654
Q ss_pred hcCC--CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950 180 CKGK--PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS 221 (458)
Q Consensus 180 ~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 221 (458)
...- ..........++..+.+.+++-...--...+.+|..+-
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lk 205 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLK 205 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSG
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcc
Confidence 3322 22233444556666777775544444444555554443
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.37 E-value=0.86 Score=41.27 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=100.9
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 043950 26 PAMVAGVWSDD-NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR----------EDYPQLQYEAAWALTNI 94 (458)
Q Consensus 26 ~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~~i~~~a~~~L~~l 94 (458)
...++.|+++. ..-....+..|+.-+...+....+.+. .+++..|+.+|.. ..+...+..+++||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34555566543 222223445555444443334456665 5678888888741 11257889999999999
Q ss_pred cCCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-ch-hhHHhh----------hCCHHHHHHHhc
Q 043950 95 ASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-GC-RNLVLR----------EEALIPLLAQLN 161 (458)
Q Consensus 95 ~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~~----------~~~l~~l~~~l~ 161 (458)
.. +......++. ...+..|...+.+.++.++..++..|+.+|.... .. ...+.+ ..-+..++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88 5666666665 4678999999999999999999999999996653 21 222222 233566666664
Q ss_pred ccccHHHHHHHHHHHHHhhcCCC
Q 043950 162 EHAKLSMLRIATWTLSKLCKGKP 184 (458)
Q Consensus 162 ~~~~~~~~~~a~~~l~~l~~~~~ 184 (458)
...+.+.+..+...+..+....+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Confidence 44566676666666666666543
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.35 E-value=0.82 Score=48.58 Aligned_cols=283 Identities=11% Similarity=0.021 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCC-----CchhhHHhhhCCH
Q 043950 81 PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAADS-----PGCRNLVLREEAL 153 (458)
Q Consensus 81 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l 153 (458)
++.|.+|-..|.++-.. + .....+...| .+.+..+|..|+.+|.+..... ++.+..+ =
T Consensus 27 ~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-----r 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-----K 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-----H
T ss_pred hHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-----H
Confidence 67888888888776542 2 1234444433 3467899999999999886432 1222222 2
Q ss_pred HHHHHHhccc------ccHHHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC---
Q 043950 154 IPLLAQLNEH------AKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG--- 223 (458)
Q Consensus 154 ~~l~~~l~~~------~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~--- 223 (458)
..++..+... ..+.++...+.++..+.... | ..-..+++.++.++.+ ++...+.++.+|..+++.
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 2344444322 35678888888888887664 3 1236778888888876 455577788888777632
Q ss_pred ----ChhhHHH----HHHh--CcHHHHHHHhCC-------------------CCccchhhHHHHHhHhhcCChhhHHHHH
Q 043950 224 ----TNDKIQV----VIEA--GVCRRLVELLGH-------------------PSPSVLTPALWTVGNIVMGDDFQTQCII 274 (458)
Q Consensus 224 ----~~~~~~~----~~~~--~~i~~L~~ll~~-------------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 274 (458)
...+... +.+. .++..+..++.. ++..+...++.++.+...--+ ...+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHH
Confidence 1111111 1111 233333444422 122355566777765544222 12233
Q ss_pred hcC--ChHHHHHHhccCChhhHHHHHHHHHHHhhcCC--HHHHHHHHHc---CChHHHHHHhc--------cCChhhHHH
Q 043950 275 NHG--AVPCLLALLIHNHKKSIKKVACWTISNITAGN--REQIQAVIDA---GLIVPLVNVLQ--------DAEFDIKKE 339 (458)
Q Consensus 275 ~~~--~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~--~~~~~~l~~~---~~~~~L~~ll~--------~~~~~~~~~ 339 (458)
+.. +++.+..++. +++++..|+.+|..++... ++....++.. ..+..++..+. +.+.++.+.
T Consensus 245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 332 6777776664 4578999999999999732 3433333321 01223444432 224566666
Q ss_pred HHHHHHHhhcCCCHHHHHHHHH-----------CCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950 340 AALAIANATVRGTHEQIKYLVR-----------EGCIKPLCDLLLCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 340 a~~~L~~l~~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~ 393 (458)
.+..+..+.. .. ..+.. .++++.+..+..+++..+...++.....+++.
T Consensus 322 l~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 322 LCQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 6666666652 11 11111 13466777777777777777777666666654
No 126
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.95 E-value=1.2 Score=38.76 Aligned_cols=173 Identities=9% Similarity=0.046 Sum_probs=102.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCc
Q 043950 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGA----VPIFVKLLAS-PSDDVREQAVWALGNVAADSPG 142 (458)
Q Consensus 68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~ 142 (458)
+..+.++++=+. +.+.-++.+++-.+. .+.....+.+... +..+...+.+ ..+.-+-.+++++.|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 466666663232 456667777776666 4555555543322 2234444433 456678889999999976654
Q ss_pred hhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHH
Q 043950 143 CRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTL 217 (458)
Q Consensus 143 ~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l 217 (458)
.++.+.. ....++..+. .+.+..++..+...+.|++... ..........++..+..++. ..|.+....++.++
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4555443 2344444442 3456778888888888887543 11222333445555555554 45789999999999
Q ss_pred HHhccCChhhHHHHHHhCcHHHHHHHhCC
Q 043950 218 SYLSYGTNDKIQVVIEAGVCRRLVELLGH 246 (458)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 246 (458)
+++...+.+..+.....|+-..+-+..+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99997665444433334554444444444
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.89 E-value=2.1 Score=44.70 Aligned_cols=172 Identities=15% Similarity=0.149 Sum_probs=109.0
Q ss_pred HHHHHHHhcc---cccHHHHHHHHHHHHHh----hcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950 153 LIPLLAQLNE---HAKLSMLRIATWTLSKL----CKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN 225 (458)
Q Consensus 153 l~~l~~~l~~---~~~~~~~~~a~~~l~~l----~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 225 (458)
+..+..++.. ..++.++..+.-+++.+ |...+......+..+...+.+.+...+.+-+...+.+|+|+.. +
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--h
Confidence 4445555532 23455666665555544 4443333334456666667777778888888999999999862 2
Q ss_pred hhHHHHHHhCcHHHHHHHhCC-----C--CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhc-cCChhhHHHH
Q 043950 226 DKIQVVIEAGVCRRLVELLGH-----P--SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI-HNHKKSIKKV 297 (458)
Q Consensus 226 ~~~~~~~~~~~i~~L~~ll~~-----~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~v~~~ 297 (458)
..++.+.+++.. . ...++..|+++|.+++...+... -+.++++.. ...++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence 245667777642 1 23477889999999987655443 334566663 2237899999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHhhcCCCH
Q 043950 298 ACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-AEFDIKKEAALAIANATVRGTH 353 (458)
Q Consensus 298 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~ 353 (458)
|+..|.... .+.. .+..+...+.. .+..|.......|.+++....+
T Consensus 534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 988886543 2222 34455555654 5788888888888888876654
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.31 E-value=2.7 Score=38.03 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=98.0
Q ss_pred HHHHhhcCCCHHHH-HHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHc
Q 043950 27 AMVAGVWSDDNSLQ-LEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR----E------DYPQLQYEAAWALTNIA 95 (458)
Q Consensus 27 ~l~~~l~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~------~~~~i~~~a~~~L~~l~ 95 (458)
..++.|++....-. ...+..|.-.+...+....+.+. .+++..|+..|.. . .+...+..+++||..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 34555554332211 22334444333433234455554 5667777777742 1 12577889999999999
Q ss_pred CCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-ch-hhHHh----------hhCCHHHHHHHhcc
Q 043950 96 SGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-GC-RNLVL----------REEALIPLLAQLNE 162 (458)
Q Consensus 96 ~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~l~~l~~~l~~ 162 (458)
. +....+.+.. .+++..+...+.++++.++..++..|..+|.... .. ...+. +..-+..++..+..
T Consensus 87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 8 5556665554 4678999999999999999999999999986553 22 22222 22345567777755
Q ss_pred cccHHHHHHHHHHHHHhhcCCCC
Q 043950 163 HAKLSMLRIATWTLSKLCKGKPQ 185 (458)
Q Consensus 163 ~~~~~~~~~a~~~l~~l~~~~~~ 185 (458)
+.+.+.+..++..+..+....+.
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~d 188 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAEE 188 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred CChHHHHHHHHHHHHHHHCCCCC
Confidence 66667777777777777766543
No 129
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.21 E-value=0.52 Score=41.05 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=70.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC---Cchh
Q 043950 70 RFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAADS---PGCR 144 (458)
Q Consensus 70 ~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~ 144 (458)
.+...+.++..+..+..++++++|+.. ++..++.+... .+++.+...+.+.+..++..++..+.|++... ...
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~- 228 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI- 228 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-
Confidence 344444444336779999999999998 57777776643 34455555555678899999999999998421 111
Q ss_pred hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 145 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
+. ....+..+...+....|++....++-++.+|...
T Consensus 229 ~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 229 EG--KAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 11 0112333444444456777888888888888764
No 130
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=93.87 E-value=0.44 Score=35.76 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHH-h
Q 043950 338 KEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVE-E 416 (458)
Q Consensus 338 ~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 416 (458)
...+.=+.+++.....+.... +++.|..-|..+++.++.+++.+|..++..+... |...+. .
T Consensus 29 gylm~EIA~~T~~s~~~~~~e-----im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~ 91 (140)
T 1vdy_A 29 VYKLEEICDLLRSSHVSIVKE-----FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRN 91 (140)
T ss_dssp HHHHHHHHHHHHHSCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHT
T ss_pred HHHHHHHHHHHHhcchhHHHH-----HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHh
Confidence 334444555554433233333 4778888888899999999999999998765543 444444 3
Q ss_pred cchHHHHHhhhcCCC--------hHHHHHHHHHHHHhcCCCCCCCC
Q 043950 417 DEGFKKIEGLKSHDN--------NGIREKAVKILETYWCGRVVGPQ 454 (458)
Q Consensus 417 ~~~~~~l~~l~~~~~--------~~v~~~a~~~l~~~~~~~~~~~~ 454 (458)
...++.+.++..-++ ..|+..|..+++-+|+.+...++
T Consensus 92 ~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~~ 137 (140)
T 1vdy_A 92 SVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSGP 137 (140)
T ss_dssp THHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCCCC
Confidence 444555555543333 56999999999999998877543
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.81 E-value=0.18 Score=38.25 Aligned_cols=75 Identities=5% Similarity=-0.030 Sum_probs=61.9
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
++..+..-+.+.++.++..|+..|-.++.++...+...+.+..++..+..++...++.|+.+++.++........
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 466677778888999999999999999999888887777777778888888877889999999999887765433
No 132
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.66 E-value=4.6 Score=42.14 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=109.5
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHhhc----CCCchhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHh
Q 043950 111 VPIFVKLLAS----PSDDVREQAVWALGNVAA----DSPGCRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKL 179 (458)
Q Consensus 111 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l 179 (458)
+..+..++.+ .++.+++.++.+++++.. ..+.|.. ..++.+...+. ...+.+-+..++.+|.|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 5566666665 567788888888887763 3233221 22344444432 344566678889999998
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC--CCCcc
Q 043950 180 CKGKPQPPFDQVRPALPALAQLIHL-------DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG--HPSPS 250 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~ 250 (458)
-. ...++.+.+++.. ....++..|+++|..++...+...+ +.+.++.. ..+.+
T Consensus 468 g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred CC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence 54 2456677777642 2356888999999999865544333 56677773 45778
Q ss_pred chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCC
Q 043950 251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN 309 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 309 (458)
+|..|+..|..- +|.. ..+..+...+..+++.+|.......|.+++...
T Consensus 530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 888888887432 2322 246667778877668899999999999998743
No 133
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.61 E-value=0.19 Score=38.40 Aligned_cols=75 Identities=11% Similarity=-0.085 Sum_probs=63.6
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~ 394 (458)
++..+..-+.+.++.++..|+..|-.++.++...+...+....++..|+.++.. .++.|+.+++.++.......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466777778889999999999999999999998888888888889999988863 57889999999998887654
Q ss_pred h
Q 043950 395 E 395 (458)
Q Consensus 395 ~ 395 (458)
.
T Consensus 129 ~ 129 (149)
T 3g2s_A 129 P 129 (149)
T ss_dssp T
T ss_pred C
Confidence 3
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.80 E-value=0.4 Score=36.67 Aligned_cols=74 Identities=11% Similarity=-0.097 Sum_probs=62.5
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~ 394 (458)
++..+..-+.+.++.++..|+..|-.++.++...+...+.+..++..|..++.. .++.|+.+++.++.......
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 466677778899999999999999999999988888888888899999988863 47789999998888776543
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.78 E-value=0.26 Score=38.45 Aligned_cols=73 Identities=4% Similarity=-0.032 Sum_probs=60.4
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHh
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~ 393 (458)
++..+.+-+.+.++.++..|+..|-.++.++...+...+....+++.|..++.. .++.|+.+++.++......
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 456677778888999999999999999999888888777777888888888865 5778999999888776654
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=92.57 E-value=0.67 Score=35.03 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=58.7
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILE 443 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 443 (458)
++..|..-+.+.++.++..|+.+|..+++..... |...+.....++.+..+....+++|+++...++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4666777788899999999999999988865432 5556666666777777766678999999999988
Q ss_pred HhcCCCCCCCCC
Q 043950 444 TYWCGRVVGPQL 455 (458)
Q Consensus 444 ~~~~~~~~~~~~ 455 (458)
.....=..+|+|
T Consensus 111 ~W~~~f~~~~~l 122 (140)
T 3ldz_A 111 EWTDEFKNDPQL 122 (140)
T ss_dssp HHHHHHTTCGGG
T ss_pred HHHHHhCCCCCc
Confidence 764433344444
No 137
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=92.30 E-value=1.1 Score=38.43 Aligned_cols=134 Identities=12% Similarity=0.082 Sum_probs=87.5
Q ss_pred chhhHHHHHhHhhcCChhhHHHHH-hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH--cCChHHHHH
Q 043950 251 VLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID--AGLIVPLVN 327 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--~~~~~~L~~ 327 (458)
....|+..|..++.......+.+- +..++..|+ +.... ++.+++.|+.+|+...+.+|+.+..+.+ ..++..++.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 455677777777753333323222 223444444 22334 6789999999999999999999888875 345555555
Q ss_pred Hhcc-------CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHHH
Q 043950 328 VLQD-------AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENILK 392 (458)
Q Consensus 328 ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~~ 392 (458)
-|.. ...-+++.-+.+|--|+... ..+ ...++..|..++... ++.++.+++.++..++.
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 4433 23356677777777777653 112 234567777777656 88999999999999986
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=91.62 E-value=0.74 Score=35.82 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=58.3
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC-CChHHHHHHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH-DNNGIREKAVKIL 442 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~~l 442 (458)
++..|..-+.+.++.++..|+.+|..+++.... .|...+.....++.+..+... .++.|++++..++
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~------------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK------------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH------------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH------------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 356677778889999999999999999987443 256666666677777777544 6789999999988
Q ss_pred HHhcCCCCCCCCC
Q 043950 443 ETYWCGRVVGPQL 455 (458)
Q Consensus 443 ~~~~~~~~~~~~~ 455 (458)
+.....-..+|++
T Consensus 121 ~~W~~~f~~~~~l 133 (163)
T 1x5b_A 121 VEWSEEFQKDPQF 133 (163)
T ss_dssp HHHHHHTTTCSTT
T ss_pred HHHHHHhcCCccc
Confidence 8764433344443
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=91.48 E-value=0.45 Score=37.40 Aligned_cols=74 Identities=12% Similarity=-0.027 Sum_probs=61.8
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~ 394 (458)
++..|.+-+.+.++.++..|+..|-.++.++...+...+.+..++..|+.++.. .+..|+.+++.++.......
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 456777888889999999999999999999888888788888888889988862 46789999999988876543
No 140
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.45 E-value=7.2 Score=32.84 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=70.4
Q ss_pred HHHHHHhhc---C-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950 25 LPAMVAGVW---S-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 25 i~~l~~~l~---~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
-..++++|+ . .+ ..+...+.....++....+... ..+++.++.+..+++ .++|...+..+...+...++
T Consensus 14 ~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~ 86 (257)
T 3gs3_A 14 RAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVE 86 (257)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHH
Confidence 344455554 2 34 6888888899987776422222 246778888776766 89999999999888865444
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 043950 101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 136 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 136 (458)
... ..++.|..++.+.++.+...++.+..++
T Consensus 87 l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 87 LLP-----HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp GHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 333 3367888888888898888888877666
No 141
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.20 E-value=6.4 Score=33.81 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=94.3
Q ss_pred hhHHHHHHhhcCC------ChHHHHHHHHHHHHhccCChhhHHHHH-HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC
Q 043950 193 PALPALAQLIHLD------DEEVLSDACWTLSYLSYGTNDKIQVVI-EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG 265 (458)
Q Consensus 193 ~~l~~l~~ll~~~------~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 265 (458)
.-+..+..+++++ +......++..|..++.......+.+. +...+..|+ +.....+.+++.|.++|+...+.
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence 3344455556554 455677788888887744333333222 334555555 33445667899999999999999
Q ss_pred ChhhHHHHHh--cCChHHHHHHhcc----C--ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--Chh
Q 043950 266 DDFQTQCIIN--HGAVPCLLALLIH----N--HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFD 335 (458)
Q Consensus 266 ~~~~~~~~~~--~~~~~~l~~ll~~----~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~ 335 (458)
+|.....+.+ ..++..+..-|.. + ....+.+.-+.+|.-+...+.. + ....+..|.+++... +..
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHH
Confidence 9998887764 2444444444332 1 1234556667777777765411 1 134667788888776 889
Q ss_pred hHHHHHHHHHHhhc
Q 043950 336 IKKEAALAIANATV 349 (458)
Q Consensus 336 ~~~~a~~~L~~l~~ 349 (458)
++..++..+..+..
T Consensus 176 ~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 176 LQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc
Confidence 99988888887763
No 142
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=88.56 E-value=13 Score=33.31 Aligned_cols=88 Identities=9% Similarity=0.101 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 043950 38 SLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117 (458)
Q Consensus 38 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 117 (458)
..+...+..+.+++... +.. .-.++++.++.+-.+++ .++|...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46788888888876643 221 22468999999988888 89999999999888874444432 336788888
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 043950 118 LASPSDDVREQAVWALGNV 136 (458)
Q Consensus 118 l~~~~~~~~~~a~~~L~~l 136 (458)
+.+.++.+...++.+..++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 8888898888888887776
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=87.67 E-value=0.93 Score=34.59 Aligned_cols=74 Identities=9% Similarity=-0.032 Sum_probs=59.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcC
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIAS 96 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~i~~~a~~~L~~l~~ 96 (458)
+++..+.+.|++.++.+++.|+..|-.+....+.....++....++..|++++.. ...+.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3577788888999999999999999988877645556677777889999999874 1237899999988887765
No 144
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=86.71 E-value=6.6 Score=35.27 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=79.1
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcc
Q 043950 320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKN 399 (458)
Q Consensus 320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~ 399 (458)
.+++.++.+-.+.+.++|+.++..+...+.. ..+.... +++.|..++.++++.|.+.++.+..+++...-..-.
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888899988888999999999999888764 2233222 467788888889999999988888777643222110
Q ss_pred cCCCCC-chhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950 400 TGSTIG-DVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 400 ~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 446 (458)
...+.. ..+.....+. .....+.++..+.+..++-.|.+++++..
T Consensus 137 ~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 000000 0012233322 23556666778889999999999988864
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=86.27 E-value=1.4 Score=36.52 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=61.1
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhch
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
++..|..-+.+.++.++..|+..|-.++.++...+...+....+++.|..+++ ..++.|+.+++.++........
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 56667777888999999999999999999888877777777777777877775 3577899999999988876443
No 146
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=86.26 E-value=11 Score=31.70 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 043950 293 SIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL 371 (458)
Q Consensus 293 ~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l 371 (458)
..|.....-+..++.+ ++.... .+++.++.+..+.+.++|+..+..+...+... .+.... +++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~-----~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPH-----VINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHH
Confidence 3555555555555443 222222 25666666666778999999999998887532 222222 57788888
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCc----hhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950 372 LLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGD----VNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 372 l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 446 (458)
++++++.|.+.++.+...++...-..--.. +. .......+ ......+.++..+.+..++-.|.+.+++..
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~---~~~~~~~~~~W~~m--~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSL---MEPGDSAEQAWNIL--SLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTTS---SSCCHHHHHHHHHH--HHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcchHHHHHHHH--HHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 888999999999988888776433221110 01 11223332 233566777778899999999999988864
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.14 E-value=3.8 Score=32.06 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=54.5
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc------CCChHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS------HDNNGIREK 437 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~ 437 (458)
++..|..-+.+.++.++..|+.+|..+++..... |...+.....++.|..+.. ..+.+|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 3566777788999999999999999999875432 5666777777888888764 246889999
Q ss_pred HHHHHHHh
Q 043950 438 AVKILETY 445 (458)
Q Consensus 438 a~~~l~~~ 445 (458)
+..+++..
T Consensus 119 il~li~~W 126 (171)
T 1juq_A 119 VIELLYSW 126 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888765
No 148
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.12 E-value=3.5 Score=31.40 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=56.2
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc------CCChHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS------HDNNGIREK 437 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~ 437 (458)
++..|..-+.+.++.++..++.+|..+++..... |...+....+++.|..+.. ..+++|+++
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 4666777788999999999999999998865543 6677777778888888764 357899999
Q ss_pred HHHHHHHhc
Q 043950 438 AVKILETYW 446 (458)
Q Consensus 438 a~~~l~~~~ 446 (458)
...+++...
T Consensus 117 il~li~~W~ 125 (149)
T 3g2s_A 117 ILELLYSWT 125 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887753
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=85.57 E-value=3.1 Score=34.27 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=55.3
Q ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cCCChHHHHHHHHHHH
Q 043950 365 IKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SHDNNGIREKAVKILE 443 (458)
Q Consensus 365 l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~ 443 (458)
+..|..-+.+.++.++..++.+|..++++.... |...+.....++.+..+. +..+++|++++..+++
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~ 111 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 556667778899999999999999999875432 455555666677777664 4567899999888887
Q ss_pred HhcCCCCCCCC
Q 043950 444 TYWCGRVVGPQ 454 (458)
Q Consensus 444 ~~~~~~~~~~~ 454 (458)
..-..-..+|.
T Consensus 112 ~W~~~f~~~~~ 122 (220)
T 1dvp_A 112 TWAYAFRSSDK 122 (220)
T ss_dssp HHHHHTTTCSS
T ss_pred HHHHHhccchH
Confidence 76433333343
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=84.42 E-value=2.6 Score=32.46 Aligned_cols=73 Identities=8% Similarity=0.060 Sum_probs=57.9
Q ss_pred ChHHHHHHhc-cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHh
Q 043950 321 LIVPLVNVLQ-DAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKP-LCDLLLC---VDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 321 ~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~~~~~l~~l~~~ 393 (458)
++..+..-++ +.++.++..|+..|-.++.++...+...+.+..+++. |+.++.. ++..|+.+++.++......
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556777776 4789999999999999999988888888777788887 7777742 3458999999888877654
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=83.49 E-value=3.1 Score=34.36 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=53.6
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cCCChHHHHHHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SHDNNGIREKAVKIL 442 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~~l 442 (458)
++..|..-+.+.++.++..|+.+|..+++..... |...+.....++.|..+. ...+++|++++..++
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3566777778999999999999999998875542 455566666666666664 446788999999988
Q ss_pred HHhcC
Q 043950 443 ETYWC 447 (458)
Q Consensus 443 ~~~~~ 447 (458)
+....
T Consensus 114 ~~W~~ 118 (226)
T 3zyq_A 114 QAWAH 118 (226)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 152
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=83.41 E-value=25 Score=31.67 Aligned_cols=230 Identities=14% Similarity=0.051 Sum_probs=111.3
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
..++...+..|+.++.++++.-|...-.+|.++-..-...|..+.. ..-..+...+-......-....+.+++.+..+-
T Consensus 124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 3344456778999999999999999988888875443333433322 111222222211111111223444555554443
Q ss_pred CCCCh-hhhhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhh--HHHH
Q 043950 184 PQPPF-DQVRPALPALAQLIHLDDE-EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTP--ALWT 258 (458)
Q Consensus 184 ~~~~~-~~~~~~l~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~--a~~~ 258 (458)
..+-. .........++++-+...- ..-.....|+......++..... .+-.++++ +....... -+.-
T Consensus 203 a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~tns~KevlFL~E 274 (403)
T 3fga_B 203 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEVMFLNE 274 (403)
T ss_dssp CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCSSCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH--------HHHHHHHhCCCCCcHHHHHHHHH
Confidence 22222 2223334445555554432 12233344444444444433332 22223333 21112222 2333
Q ss_pred HhHhhcC-ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH---cCChHHHHHHh----c
Q 043950 259 VGNIVMG-DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID---AGLIVPLVNVL----Q 330 (458)
Q Consensus 259 l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~ll----~ 330 (458)
+..+... .+.....+. ..++..+...+.++ +.+|.+.|.....| +.+..++. ..++|.+...+ .
T Consensus 275 le~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~ 346 (403)
T 3fga_B 275 LEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSK 346 (403)
T ss_dssp HHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444432 233333322 34678888888888 88888877654421 22222222 12455554444 2
Q ss_pred cC-ChhhHHHHHHHHHHhhcC
Q 043950 331 DA-EFDIKKEAALAIANATVR 350 (458)
Q Consensus 331 ~~-~~~~~~~a~~~L~~l~~~ 350 (458)
+. +..++..+..++.-+...
T Consensus 347 ~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 347 THWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp CCSCHHHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHHHHh
Confidence 22 778888888888777653
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=80.11 E-value=1.4 Score=36.30 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=55.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 96 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 96 (458)
+++..+.+.|++.++.+++.|+..|-.++..-+.....++....+++.|++++.+..+..++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34667788888999999999999998887764333445666667888888888755447888888877776654
No 154
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=78.68 E-value=40 Score=30.94 Aligned_cols=241 Identities=14% Similarity=0.101 Sum_probs=116.0
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcC
Q 043950 61 DVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAAD 139 (458)
Q Consensus 61 ~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~ 139 (458)
..++..++..|+.++.+++ +.-|...-.+|..+-+.....|..+.. .+-..+.+++.. ....-....+.+++.+..+
T Consensus 157 ~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 157 KYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 3344456778888888888 888888877887776544444443332 122344444432 1111223355566666543
Q ss_pred CC-chhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 043950 140 SP-GCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLS 218 (458)
Q Consensus 140 ~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~ 218 (458)
-. ..++.- ..-....++.+.....-.........++..+...++ .....++..++..=-..++.-...-+.-+.
T Consensus 235 fa~PLKeeh-k~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp----~L~~~vi~~LLk~WP~tns~KevlFL~ele 309 (449)
T 2npp_B 235 FALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS----TLTEPVVMALLKYWPKTHSPKEVMFLNELE 309 (449)
T ss_dssp CCSSCCHHH-HHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCG----GGHHHHHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred cCCCCcHHH-HHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCc----HhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 21 111110 000011122222111112223334455555444322 112223333332222333333333444444
Q ss_pred HhccC-ChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHh---cCChHHHHHHhccC----C
Q 043950 219 YLSYG-TNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN---HGAVPCLLALLIHN----H 290 (458)
Q Consensus 219 ~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~l~~ll~~~----~ 290 (458)
.+... .+...+.+. ..++..+.+++.+++..|.+.|+....| + ....++. ..++|.+...|... =
T Consensus 310 eile~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w~N-----~-~i~~li~~n~~~IlPii~p~L~~~s~~HW 382 (449)
T 2npp_B 310 EILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHW 382 (449)
T ss_dssp HHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHTSCTTCCS
T ss_pred HHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHCC-----H-HHHHHHHhchhhhHHhhHHHHHHHHHHhc
Confidence 44432 222223222 3478888899999888888888765522 1 1122221 12456666655322 1
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHH
Q 043950 291 KKSIKKVACWTISNITAGNREQIQA 315 (458)
Q Consensus 291 ~~~v~~~a~~~l~nl~~~~~~~~~~ 315 (458)
+..++..+..++.-+...++.....
T Consensus 383 n~~V~~la~~vlk~l~e~d~~lf~~ 407 (449)
T 2npp_B 383 NKTIHGLIYNALKLFMEMNQKLFDD 407 (449)
T ss_dssp STTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 4578888888888877766654433
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=77.26 E-value=5.7 Score=30.55 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=51.7
Q ss_pred ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHH-HHhhhc---CCChHHHHHH
Q 043950 364 CIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKK-IEGLKS---HDNNGIREKA 438 (458)
Q Consensus 364 ~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~---~~~~~v~~~a 438 (458)
++..|..-++ +.++.++..|+.+|..+++.... .|...+.....++. +..+.. .+...|++++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~------------~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki 121 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH------------RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKV 121 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH------------HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 3556777776 57899999999999999987543 25666666677776 566542 3456899999
Q ss_pred HHHHHHhcC
Q 043950 439 VKILETYWC 447 (458)
Q Consensus 439 ~~~l~~~~~ 447 (458)
..+++....
T Consensus 122 l~li~~W~~ 130 (157)
T 1elk_A 122 LNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877643
No 156
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=77.25 E-value=5.5 Score=29.83 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=52.6
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCC-hHHHHhhccCCC--------HHHHHHHHHHHHHHH
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGC-IKPLCDLLLCVD--------PKIVTVCLEGLENIL 391 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~-l~~L~~ll~~~~--------~~v~~~~~~~l~~l~ 391 (458)
+++.|.+-|...++.++..|+..|.+++..+++.+...+.+.-. |+.+...--.++ ..|+..|-+++..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 56678888888899999999999999999999888888766432 222222211112 368888888887776
Q ss_pred Hhc
Q 043950 392 KVG 394 (458)
Q Consensus 392 ~~~ 394 (458)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
No 157
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=73.91 E-value=36 Score=35.18 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=102.8
Q ss_pred CHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHH-----HhccCChh
Q 043950 152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLS-----YLSYGTND 226 (458)
Q Consensus 152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~-----~l~~~~~~ 226 (458)
.+..++++. .+..++++..|-.++......-+.........++..|-.-+...+.+-.+-++.+|. ..+..+-.
T Consensus 134 ll~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~ 212 (997)
T 1vsy_5 134 LLVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK 212 (997)
T ss_dssp HHHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH
T ss_pred HHHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH
Confidence 455666655 677889999999999998876544443333444444444334456666666776654 11111111
Q ss_pred hHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh------------------------hhHHH----------
Q 043950 227 KIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD------------------------FQTQC---------- 272 (458)
Q Consensus 227 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~------------------------~~~~~---------- 272 (458)
. -..+++.+++....++++++..+-.+...+..... .....
T Consensus 213 ~-----~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 213 D-----IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp H-----HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred H-----HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1 12356677777666777777666555443332100 00000
Q ss_pred -HHh--cCChHHHHHHhccCCh--hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950 273 -IIN--HGAVPCLLALLIHNHK--KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA 347 (458)
Q Consensus 273 -~~~--~~~~~~l~~ll~~~~~--~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 347 (458)
..+ .++...++.+.+++.. .+....++..+.++..... ......++..+++.+.++++.+|..|+.++..+
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 000 1233334455433335 6666666666555553100 000112566677778889999999999888666
Q ss_pred hc
Q 043950 348 TV 349 (458)
Q Consensus 348 ~~ 349 (458)
+.
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 158
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=71.42 E-value=6.3 Score=30.09 Aligned_cols=75 Identities=12% Similarity=-0.001 Sum_probs=55.4
Q ss_pred ChHHHHHHhcc-CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHhch
Q 043950 321 LIVPLVNVLQD-AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKP-LCDLLLC---VDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 321 ~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~~~~~l~~l~~~~~ 395 (458)
++..+..-+.. .++.++..|+..|-.++.++...+...+....++.. |+.++.. .+..|+.+++.++........
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 45566666764 577788889999999999998888777766666653 6666653 245799999999988876544
No 159
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=66.85 E-value=79 Score=29.05 Aligned_cols=232 Identities=14% Similarity=0.047 Sum_probs=119.9
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
....++...+..|+.++.++++.-|...-.+|..+-..-...|..+.. ..-..+...+-......-....+.+++.+..
T Consensus 155 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIin 233 (449)
T 2npp_B 155 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 233 (449)
T ss_dssp GGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence 344455567888999999999999999999998886554455554433 1122233333211111223455666777766
Q ss_pred CCCCCChhhh-hhhHHHHHHhhcCCChH-HHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhh--HH
Q 043950 182 GKPQPPFDQV-RPALPALAQLIHLDDEE-VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTP--AL 256 (458)
Q Consensus 182 ~~~~~~~~~~-~~~l~~l~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~--a~ 256 (458)
+....-.... ......++++.+...-. .-.....|+......++..... .+-.++++ +....... -+
T Consensus 234 Gfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~tns~KevlFL 305 (449)
T 2npp_B 234 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEVMFL 305 (449)
T ss_dssp SCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCSSCHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH--------HHHHHHHhCCCCCchHHHHHH
Confidence 6432222222 33344455666554422 2223334444444444433332 22233333 21112222 23
Q ss_pred HHHhHhhcC-ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH---cCChHHHHHHhcc-
Q 043950 257 WTVGNIVMG-DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID---AGLIVPLVNVLQD- 331 (458)
Q Consensus 257 ~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~ll~~- 331 (458)
.-+..+... .+.....+. ..++..+..++.++ +.+|.+.|+....| +.+..++. ..++|.+...+..
T Consensus 306 ~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L~~~ 377 (449)
T 2npp_B 306 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRN 377 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHHHHH
Confidence 334444432 233333332 34788888899888 88888877654432 22222222 1255666665532
Q ss_pred ----CChhhHHHHHHHHHHhhcC
Q 043950 332 ----AEFDIKKEAALAIANATVR 350 (458)
Q Consensus 332 ----~~~~~~~~a~~~L~~l~~~ 350 (458)
-+..++..+..++.-+...
T Consensus 378 s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 378 SKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp TTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHH
Confidence 1667888888888776654
No 160
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=66.40 E-value=74 Score=28.58 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=92.4
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
..++...+..|+.++.++++.-|...-.+|.++-..-...|..+.. ..-..+.+.+.......-....+++++.+..+.
T Consensus 169 ~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 169 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp TTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred hhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 3444456788999999999999999998888876544444444332 122233444422222222344556666666554
Q ss_pred CCCChhhh-hhhHHHHHHhhcCCChH-HHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950 184 PQPPFDQV-RPALPALAQLIHLDDEE-VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261 (458)
Q Consensus 184 ~~~~~~~~-~~~l~~l~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~ 261 (458)
...-.... ......++++.+...-. .-.....|+......++.....+ +..+++.=-..+..-...-+.-+..
T Consensus 248 a~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~elee 322 (392)
T 2jak_A 248 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEE 322 (392)
T ss_dssp CSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHH
Confidence 22222222 33344455565544321 12233344444443343333321 2222222111222111222333333
Q ss_pred hhcC-ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950 262 IVMG-DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTI 302 (458)
Q Consensus 262 l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l 302 (458)
+... .+.....+. ..++..+..++.++ ..+|.+.|....
T Consensus 323 iLe~~~~~~f~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w 362 (392)
T 2jak_A 323 ILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW 362 (392)
T ss_dssp HHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 3332 223323222 35677788888887 777777765443
No 161
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=64.85 E-value=49 Score=26.93 Aligned_cols=139 Identities=6% Similarity=-0.076 Sum_probs=79.8
Q ss_pred HHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhC
Q 043950 157 LAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAG 235 (458)
Q Consensus 157 ~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 235 (458)
+..+-.++.-+.+..++..+....... ....++.+-.++. -++..+....+.+++.+....+. .
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~--------~ 124 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT--------E 124 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG--------G
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH--------H
Confidence 333334455566666666666543211 1223333334443 34566666655556665433222 2
Q ss_pred cHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHH
Q 043950 236 VCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA 315 (458)
Q Consensus 236 ~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 315 (458)
+.+.+.....+++.-+++.|+..+..... ...... .++.+-..+.++ +.-|++...|+|..+...+++....
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34567788888888888888765532221 111111 234444466666 8899999999999999988776555
Q ss_pred HHH
Q 043950 316 VID 318 (458)
Q Consensus 316 l~~ 318 (458)
++.
T Consensus 197 fl~ 199 (220)
T 2b6c_A 197 LMK 199 (220)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 162
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=64.22 E-value=58 Score=33.64 Aligned_cols=191 Identities=13% Similarity=0.065 Sum_probs=107.3
Q ss_pred ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC----CCccchhhHHHHHh--
Q 043950 187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH----PSPSVLTPALWTVG-- 260 (458)
Q Consensus 187 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~l~-- 260 (458)
.......++.-++++--+.-++++..|-.++..+...-...... +++.+++.|.. .+.+-.+.|+.+|.
T Consensus 127 ~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k 201 (997)
T 1vsy_5 127 ASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIK 201 (997)
T ss_dssp CCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSH
T ss_pred CChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhh
Confidence 44455777888888888889999999999999988655433332 34555555543 34445556666554
Q ss_pred ---HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC--C--------------------------
Q 043950 261 ---NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG--N-------------------------- 309 (458)
Q Consensus 261 ---~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~--~-------------------------- 309 (458)
..+..+.... ..+++.+++....+ .+.++.-+-.+...+... .
T Consensus 202 ~~~~~~~~d~~~~-----~~~~~ali~~~~~d-KpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~ 275 (997)
T 1vsy_5 202 KIHRKLMTDYKDI-----GRLIFLLIECCRVN-ELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQV 275 (997)
T ss_dssp HHHHHGGGCHHHH-----HHHHHHHHHTCSCS-SSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHH
T ss_pred hhhhHHhcChHHH-----HHHHHHHHHhCcCC-CHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHH
Confidence 1122122111 13455555554444 555555444443333220 0
Q ss_pred -------HHHHHHHHH--cCChHHHHHHhc-cCC--hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCH
Q 043950 310 -------REQIQAVID--AGLIVPLVNVLQ-DAE--FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDP 377 (458)
Q Consensus 310 -------~~~~~~l~~--~~~~~~L~~ll~-~~~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 377 (458)
...+....+ .++...+++..+ +.+ .+....++..+.++...-+.. ....+++.+.+.+.++++
T Consensus 276 ~~~~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp 350 (997)
T 1vsy_5 276 EAVKLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHP 350 (997)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCH
Confidence 000111111 123334445542 235 667777777766666432111 111246678888899999
Q ss_pred HHHHHHHHHHHHHHHh
Q 043950 378 KIVTVCLEGLENILKV 393 (458)
Q Consensus 378 ~v~~~~~~~l~~l~~~ 393 (458)
.++..++.++..++..
T Consensus 351 ~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 351 EIIHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888765
No 163
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=62.02 E-value=91 Score=28.12 Aligned_cols=232 Identities=10% Similarity=0.039 Sum_probs=121.4
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC-ccchhhHHHHHhHhhcCC----
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS-PSVLTPALWTVGNIVMGD---- 266 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~l~~l~~~~---- 266 (458)
...+-.|+.++.++|+.-+...-.++.++-..-... ..++...+-..+.+.+...+ ..-....+.+++.+..+-
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~-R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 556778999999999999988888887765333322 22333334445555544332 223445677777776543
Q ss_pred -hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950 267 -DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIA 345 (458)
Q Consensus 267 -~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 345 (458)
++.... +...|+.+.+.+.-......-..++..+...++..... ++..+++.--..+..-...-+.-+.
T Consensus 207 keehk~f-----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~Ele 276 (403)
T 3fga_B 207 KEEHKIF-----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE 276 (403)
T ss_dssp CHHHHHH-----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred hHHHHHH-----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 222221 12334444444422233344455555555433322211 2222333222233332333344455
Q ss_pred HhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH--HHhchhhcccCCCCCchhHHHHHHHhcchHHHH
Q 043950 346 NATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI--LKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKI 423 (458)
Q Consensus 346 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 423 (458)
.++...++.....+.. .+...+..++.+++-.|.+.|+....+= ....... .......+ +..|
T Consensus 277 ~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n---------~~~IlPii-----~p~L 341 (403)
T 3fga_B 277 EILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN---------AAKILPIM-----FPSL 341 (403)
T ss_dssp HHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT---------HHHHHHHH-----HHHH
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHh---------HHHHHHHH-----HHHH
Confidence 5665555554443222 3577788888899999988887664221 1100000 00112222 4455
Q ss_pred Hhh-hcCCChHHHHHHHHHHHHhcCCC
Q 043950 424 EGL-KSHDNNGIREKAVKILETYWCGR 449 (458)
Q Consensus 424 ~~l-~~~~~~~v~~~a~~~l~~~~~~~ 449 (458)
.+. .+|=++.|+..+..++..+-+.+
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhC
Confidence 443 56678999999999997765544
No 164
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=61.87 E-value=83 Score=33.44 Aligned_cols=171 Identities=12% Similarity=0.066 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCCh----------hhh
Q 043950 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPF----------DQV 191 (458)
Q Consensus 122 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~----------~~~ 191 (458)
...+.+.-+..+.++....+ ...++-++-++..+.+...++.+-.++.+.......... ...
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 45555666666666543221 123333333332344444566666666665554321111 111
Q ss_pred hhhHHH----HHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh
Q 043950 192 RPALPA----LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD 267 (458)
Q Consensus 192 ~~~l~~----l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 267 (458)
...++. .-.++.+.++.++.-+......+-...+. ..+..++..|+....+++..-...|+.+|..++..++
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~ 470 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNA 470 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCH
Confidence 222333 33466688888877766655555443332 2233466777776666665556678889988887666
Q ss_pred hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 268 FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 268 ~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
...... +-.+..+++.+.+=...++|+ ....++.++.
T Consensus 471 ~~l~~~--a~~l~giLD~l~~l~~~QiRk-lf~iL~~laf 507 (1323)
T 3s4w_B 471 SAMRLN--AAFVKGILDYLENMSPQQIRK-IFCILSTLAF 507 (1323)
T ss_dssp HHHHHT--HHHHHGGGGGGGGCCHHHHHH-HHHHHHHHHH
T ss_pred HHHhHH--HHHHHHHHHhhcCCCHHHHHH-HHHHHHHHHc
Confidence 543321 123445555555542344444 4667777663
No 165
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=59.67 E-value=60 Score=29.15 Aligned_cols=184 Identities=9% Similarity=0.010 Sum_probs=94.7
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC-ccchhhHHHHHhHhhcCCh---
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS-PSVLTPALWTVGNIVMGDD--- 267 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~l~~l~~~~~--- 267 (458)
...+..|+.++.++|+.-+.....++..+-..-..... ++...+-..+.+.+...+ ..-....+.+++.+..+..
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PL 251 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 251 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 56788899999999999998888888776533232222 334445556666665533 3344567788877776542
Q ss_pred --hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950 268 --FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIA 345 (458)
Q Consensus 268 --~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 345 (458)
+... + +...++.+.+...-......-..++..+...++..... ++..+++.--..+..=...-+.-+.
T Consensus 252 Keehk~-F----l~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 252 KEEHKI-F----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CHHHHH-H----HHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cHHHHH-H----HHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHHH
Confidence 2222 1 13344445544411222233444444444322222111 2222222222222221222233344
Q ss_pred HhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHH
Q 043950 346 NATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGL 387 (458)
Q Consensus 346 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l 387 (458)
.+....++.....+. .-+...+..++.+++-+|.++|+...
T Consensus 322 eiLe~~~~~~f~~i~-~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 322 EILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHTCCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 444444444333321 23566677778888888877776554
No 166
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=59.45 E-value=33 Score=26.08 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=53.2
Q ss_pred ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHH-HHhhhc---CCChHHHHHH
Q 043950 364 CIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKK-IEGLKS---HDNNGIREKA 438 (458)
Q Consensus 364 ~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~---~~~~~v~~~a 438 (458)
++..|..-+. ++++.+...|+.+|..+++..... |...+....+++. |..+.. +...+|++++
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~------------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~ki 121 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS------------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRI 121 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHH
Confidence 3556666666 468888888999999988865543 5555555555543 555543 2345799999
Q ss_pred HHHHHHhcCCCCCCCCC
Q 043950 439 VKILETYWCGRVVGPQL 455 (458)
Q Consensus 439 ~~~l~~~~~~~~~~~~~ 455 (458)
..+++.....=..+|.+
T Consensus 122 l~li~~Wa~~F~~~p~l 138 (152)
T 3rru_A 122 LNFIKTWSQGFPGGVDV 138 (152)
T ss_dssp HHHHHHHHTCCSSSCCC
T ss_pred HHHHHHHHHHhCCCCcc
Confidence 99998876555555544
No 167
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=59.16 E-value=45 Score=27.91 Aligned_cols=133 Identities=8% Similarity=-0.008 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc
Q 043950 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE 162 (458)
Q Consensus 84 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~ 162 (458)
+.-++..++-++.+.+. . +.+..++ ..+.+.++..+-.++++++|+..+....+..+........++..+..
T Consensus 71 ~fP~lDllRl~~~~~~~-~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPY-S------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSC-G------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCch-H------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 44466666666653321 1 2233322 33445567888999999999987765345555443234445554421
Q ss_pred -------cccHHHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhc-----CCChHHHHHHHHHHHHhccC
Q 043950 163 -------HAKLSMLRIATWTLSKLCKGK--PQPPFDQVRPALPALAQLIH-----LDDEEVLSDACWTLSYLSYG 223 (458)
Q Consensus 163 -------~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~-----~~~~~~~~~~~~~l~~l~~~ 223 (458)
..+..++..+...+.|++... ..........++..+...+. ..|++....++.+++++...
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 124557777777888877542 11112222333333333221 23778888899999998843
No 168
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=55.65 E-value=17 Score=30.54 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=63.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCccHHHHH-HcCCHHHHHHhhcC--------CCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 33 WSDDNSLQLEATTQFRILLSIERSPRIEDVI-QAGVVPRFVEFLMR--------EDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 33 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~--------~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.+.++..++.+++.++|+.... ...+.+. .......+++.+.+ ++ ..++..++..+.|++......+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~--~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~-~nl~iA~ATl~~N~av~~~~~~~ 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNE--NWGVKLLESNQVYKSIFETIDTEFSQASAKQS-QNLAIAVSTLIFNYSALVTKGNS 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCT--TTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHH-HHHHHHHHHHHHHHHHHHHTSCS
T ss_pred CCCchhHHHHHHHHHHHcccCC--chHHHHHhcchhHHHHHHHHHHHhhhcccCCc-hhHHHHHHHHHHHHHHHHhhccc
Confidence 3567889999999999997753 3233333 22223444444322 23 57899999999998872111110
Q ss_pred HHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhhcCCCchh
Q 043950 104 VVIDHGAVPIFVKLLAS---------PSDDVREQAVWALGNVAADSPGCR 144 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~~~~ 144 (458)
+......++..+.. .+++...-++.+++++...++..+
T Consensus 177 ---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~ 223 (253)
T 3gae_A 177 ---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 223 (253)
T ss_dssp ---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGG
T ss_pred ---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 11233445554432 366777778889999986555443
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=53.54 E-value=92 Score=28.31 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc
Q 043950 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE 162 (458)
Q Consensus 84 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~ 162 (458)
+.-++.+++-++.+.+.. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 444666666666533211 1233233 33445678888899999999987665334444332234556665531
Q ss_pred -------cccHHHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhc---------CCChHHHHHHHHHHHHhccCC
Q 043950 163 -------HAKLSMLRIATWTLSKLCKGK--PQPPFDQVRPALPALAQLIH---------LDDEEVLSDACWTLSYLSYGT 224 (458)
Q Consensus 163 -------~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~---------~~~~~~~~~~~~~l~~l~~~~ 224 (458)
..+..++..+...+.|++... .... ...++.+...+. ..|++....++-+++++....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 124557777777788877542 1111 223334444443 358899999999999998543
Q ss_pred h
Q 043950 225 N 225 (458)
Q Consensus 225 ~ 225 (458)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=49.90 E-value=27 Score=31.71 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=66.5
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHc-CCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 32 VWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMRE-------DYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 32 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~ll~~~-------~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
+.+..+..++.+++.++|+... ....+.+... ...+.+++.+... .+..++..++..+.|++......+.
T Consensus 271 l~~~~~an~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~ 348 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS 348 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred cCCCChhHHHHHHHHHHHhcCC--cchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc
Confidence 3356789999999999999765 3333444422 2345566655321 1257889999999999873111110
Q ss_pred HHHhCCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhcCCCchh
Q 043950 104 VVIDHGAVPIFVKLLA---------SPSDDVREQAVWALGNVAADSPGCR 144 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~~ 144 (458)
+...+..+...+. ..+++...-++.+|++|....+..+
T Consensus 349 ---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~ 395 (425)
T 3pst_A 349 ---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 395 (425)
T ss_dssp ---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 1223445555554 2477788888999999986554443
No 171
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=47.09 E-value=64 Score=24.21 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=55.8
Q ss_pred HHHHHHHHCCChHHHHhhcc------CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh
Q 043950 354 EQIKYLVREGCIKPLCDLLL------CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK 427 (458)
Q Consensus 354 ~~~~~l~~~~~l~~L~~ll~------~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 427 (458)
.....+++.|++..+-.-++ -++..++...+.+|..+ + .. .+.+.++|.=+.+.-|.
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----P-I~------------~e~Lk~SglGkvv~~l~ 114 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----K-IH------------KEHLVTSGVGKIVYFYS 114 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----C-CC------------HHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----C-CC------------HHHhhcCCCCcchhhhh
Confidence 34566788888888887776 25678888888888765 1 11 66778888888888887
Q ss_pred cCC--ChHHHHHHHHHHHHh
Q 043950 428 SHD--NNGIREKAVKILETY 445 (458)
Q Consensus 428 ~~~--~~~v~~~a~~~l~~~ 445 (458)
.|+ .++++..|..+++++
T Consensus 115 k~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 115 INPKESKEVRASAKALVQKW 134 (145)
T ss_dssp HCTTSCHHHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHH
Confidence 665 467899999999875
No 172
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=44.79 E-value=91 Score=27.68 Aligned_cols=130 Identities=11% Similarity=0.032 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc
Q 043950 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE 162 (458)
Q Consensus 84 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~ 162 (458)
+.-++.+++-++.+.+. . +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+..
T Consensus 180 ~FP~LDLLRl~v~~~~~-~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-S------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-G------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-H------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 44466666665553221 1 2233333 33445668888899999999987665334444322123344544421
Q ss_pred -------cccHHHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhc---------CCChHHHHHHHHHHHHhccCC
Q 043950 163 -------HAKLSMLRIATWTLSKLCKGK--PQPPFDQVRPALPALAQLIH---------LDDEEVLSDACWTLSYLSYGT 224 (458)
Q Consensus 163 -------~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~---------~~~~~~~~~~~~~l~~l~~~~ 224 (458)
..+..++..+...+.|++... .... ....+.+...+. ..|++....++-+++++....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 124557777777788877542 1111 223334444443 358899999999999998533
No 173
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=42.77 E-value=1.3e+02 Score=24.29 Aligned_cols=135 Identities=9% Similarity=-0.144 Sum_probs=78.6
Q ss_pred HHHHHHhCCCCccchhhHHHHHhHhhcC-ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950 238 RRLVELLGHPSPSVLTPALWTVGNIVMG-DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV 316 (458)
Q Consensus 238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 316 (458)
..+..+..++..+.+..|+..+...... .++. ++.+-.++....+..+....+.+++.+....++
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 3445556666666677777777655322 2211 222233333332455555544556655532222
Q ss_pred HHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 317 IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 317 ~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
.+.+.+.....+++..++..|+.++.......+.+.. ++.+..++.+++..|++.+-|+|..+.+..+.
T Consensus 124 ---~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~--------~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 124 ---ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQDLL--------KKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp ---GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHH--------HHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHH--------HHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 1345677778888888888887766444333332221 34444577888889999999999998887665
Q ss_pred h
Q 043950 397 E 397 (458)
Q Consensus 397 ~ 397 (458)
.
T Consensus 193 ~ 193 (220)
T 2b6c_A 193 W 193 (220)
T ss_dssp H
T ss_pred H
Confidence 4
No 174
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=42.55 E-value=30 Score=30.74 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=64.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcC-CHHHHHHhhcC--------CCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 32 VWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAG-VVPRFVEFLMR--------EDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 32 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~i~~L~~ll~~--------~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+.+..+..++.+++.++|+... ....+.+.... ....+++.+.. .+ ..++..++..+.|++......+
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~n-kNl~IA~ATL~lNlAv~~~~~~ 284 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQS-QNLAIAVSTLIFNYSALVTKGN 284 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHH-HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCChhHHHHHHHHHHHhccC--cchHHHHHhcchhHHHHHHHHHHHhhhcccCCC-chHHHHHHHHHHHHHHHHhccc
Confidence 3356789999999999999765 33234444221 23344444321 12 5788999999999987311111
Q ss_pred HHHHhCCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhcCCCch
Q 043950 103 NVVIDHGAVPIFVKLLA---------SPSDDVREQAVWALGNVAADSPGC 143 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~ 143 (458)
. +......+...+. ..+++...-++.+|++|....+..
T Consensus 285 ~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~ 331 (362)
T 3l3f_X 285 S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 331 (362)
T ss_dssp S---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred c---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 0 1223445556554 247788888899999998654443
No 175
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=42.09 E-value=94 Score=22.92 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=59.8
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhccc
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNT 400 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 400 (458)
+++.|+..|++.+-.+...++..|...- ... ++.+...+.+.|..= ..+++..+....+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~l---------~p~I~~vl~s~D~~W---~ywil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SIA---------MPHILTILQGNDIMW---KYWVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HHH---------HHHHHHHHHSSCHHH---HHHHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hhh---------HHHHHHHHHcCChHH---HHHHHHHHHHcCCHH---
Confidence 5778899999999998888877777642 122 444555666666543 345555544332221
Q ss_pred CCCCCchhHHHHHHHhcchHHHHHhhhcCC-----ChHHHHHHHHHHHHhcCC
Q 043950 401 GSTIGDVNQYARLVEEDEGFKKIEGLKSHD-----NNGIREKAVKILETYWCG 448 (458)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~~v~~~a~~~l~~~~~~ 448 (458)
....+ ...|.++..++ ..++.+.|.++|++||.+
T Consensus 93 ---------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 ---------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp ---------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred ---------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 12333 45667776664 477899999999999874
No 176
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=42.08 E-value=1.3e+02 Score=24.53 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=79.1
Q ss_pred HHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHH-HHHHHhccCChhhHHHHHH
Q 043950 156 LLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDAC-WTLSYLSYGTNDKIQVVIE 233 (458)
Q Consensus 156 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~ 233 (458)
++..+-.++..+.+..++..+....... ....++.+-.++. .++..+....+ .+++.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~------- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHI-------NETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE------- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGC-------CGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-------
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-------
Confidence 4444435555666666666665332111 1223344444443 34455554432 334444322221
Q ss_pred hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH
Q 043950 234 AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313 (458)
Q Consensus 234 ~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 313 (458)
...+.+.....+++.-+++.|+..+.. ........ ..++.+...+.++ +.-|++...|+|..+...+++..
T Consensus 131 -~~~~~l~~W~~s~~~w~rR~ai~~~l~--~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 131 -LISAYIPKWIASDNIWLQRAAILFQLK--YKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp -GGGGTHHHHHHSSCHHHHHHHHHTTTT--CGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHHHH--HHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHH
Confidence 134567778888888888887755422 21111111 1334455566666 88999999999999999888877
Q ss_pred HHHHHcC
Q 043950 314 QAVIDAG 320 (458)
Q Consensus 314 ~~l~~~~ 320 (458)
..+++..
T Consensus 202 ~~fl~~~ 208 (232)
T 3jxy_A 202 WEYVQNN 208 (232)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
Confidence 6666543
No 177
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=40.48 E-value=3.7e+02 Score=28.75 Aligned_cols=101 Identities=11% Similarity=0.022 Sum_probs=60.4
Q ss_pred HHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 043950 284 ALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREG 363 (458)
Q Consensus 284 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~ 363 (458)
.++.+. ++.++..+...-..+........ +..++..|+...-+++..-...|+.+|..++... +....... -
T Consensus 407 ~Ll~S~-~~~v~~Fg~~lY~~lF~~fd~~~----qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~-~~~l~~~a--~ 478 (1323)
T 3s4w_B 407 TLFHSQ-DQRIILFGSLLYKYAFKFFDTYC----QQEVVGALVTHVCSGTEAEVDTALDVLLELIVLN-ASAMRLNA--A 478 (1323)
T ss_dssp HHHTSS-SHHHHHHHHHHHHHHHHSSCHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-HHHHHHTH--H
T ss_pred HHHhCC-CHHHHHHHHHHHHHHHHhccchh----HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC-HHHHhHHH--H
Confidence 455666 88888888877777665432221 1235566777666665555666888998888643 23222211 1
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~ 392 (458)
.+..+.+.++.-+..=..+...+++.+.-
T Consensus 479 ~l~giLD~l~~l~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 479 FVKGILDYLENMSPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp HHHGGGGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Confidence 35556666666555444555778877764
No 178
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=37.14 E-value=2.1e+02 Score=24.88 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=98.0
Q ss_pred chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh-c---cC----ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCCh
Q 043950 251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-I---HN----HKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~---~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 322 (458)
+++..+..+.......++. +. +...++|++++.. . .. .+++|-.-.+..+..+-..-.+.+..+.+ .++
T Consensus 45 vKkeiLkLiet~i~~~~d~-~~-v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~-~VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDP-QM-VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD-AVF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCH-HH-HHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCCH-HH-HHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHH
Confidence 4555566665555433221 22 2234566666432 1 11 14455555555555554333334444444 256
Q ss_pred HHHHHHhcc---CChhhHHHHHHHHHHhhcCC-------CHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950 323 VPLVNVLQD---AEFDIKKEAALAIANATVRG-------THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 323 ~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~-------~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~ 392 (458)
..-+++++. +-|+.|.+-...|.++...+ ++++.+. +++.++-..++++++|...++.++..++.
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 666667764 46888888777777776543 2222222 46667777889999999999999999988
Q ss_pred hchhhcccCCCCCchhHHHHHHHhcchHHHHHhh----hcCCChHHHHHHHHHHHHhc
Q 043950 393 VGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL----KSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~ 446 (458)
...+.. .+...|-+.-.+..+.+. .++.+.--.+.-..+|..+|
T Consensus 197 n~~~~~----------~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf 244 (321)
T 1w9c_A 197 NVAQEE----------AAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMF 244 (321)
T ss_dssp HHHHCH----------HHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHH
T ss_pred HHhcCh----------HHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHH
Confidence 765411 234555444445555543 33333222333345555555
No 179
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=35.07 E-value=2.3e+02 Score=28.44 Aligned_cols=111 Identities=11% Similarity=0.090 Sum_probs=68.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc--cccHHHHHHHHHHHHHhhcCCC--C
Q 043950 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--HAKLSMLRIATWTLSKLCKGKP--Q 185 (458)
Q Consensus 110 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~~~~~~~a~~~l~~l~~~~~--~ 185 (458)
+.|.+...+.+.+..+...+..++.+++.-.|.+.+.+.. +++..+-..|.. -.++.-...++.++..++..-. .
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 3566667778899999999999999999888755554422 334444444422 2445555566666666553221 1
Q ss_pred CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950 186 PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS 221 (458)
Q Consensus 186 ~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 221 (458)
.-..-+..++..+++-+..+|+.--..++..+..++
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 112233555666666677788777667777766665
No 180
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=34.49 E-value=74 Score=22.21 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHhcchHHHHHhhhcC-CChHHHHHHHHHHHHh
Q 043950 411 ARLVEEDEGFKKIEGLKSH-DNNGIREKAVKILETY 445 (458)
Q Consensus 411 ~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~ 445 (458)
.+.+.+.+.=..+..|..| ++++|+..|..++...
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~W 82 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 82 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 7778888888889999776 9999999999998765
No 181
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=25.15 E-value=2.6e+02 Score=22.21 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=70.2
Q ss_pred CHHHHHHHhc-----ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccC
Q 043950 152 ALIPLLAQLN-----EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLD---DEEVLSDACWTLSYLSYG 223 (458)
Q Consensus 152 ~l~~l~~~l~-----~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~ 223 (458)
.+|.++..+. +-.+.......+.+...|..++.-........++|.++..+-.. ...+|..|...+..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 4666666553 22366777778888888888865555556688888877766432 227999999999999844
Q ss_pred ChhhHHHHHHhCcHHHHHHHhCCCCc--cchhhHHHHHhHh
Q 043950 224 TNDKIQVVIEAGVCRRLVELLGHPSP--SVLTPALWTVGNI 262 (458)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~ll~~~~~--~~~~~a~~~l~~l 262 (458)
...... -....+...+.+.+.+++. ....-|+..|..+
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 222111 2244567777777776543 3344455555555
No 182
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=22.92 E-value=1.3e+02 Score=21.93 Aligned_cols=61 Identities=5% Similarity=0.025 Sum_probs=39.3
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 043950 153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG 223 (458)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 223 (458)
+...+..| +...+.+.....|++.+--. ...++..+.+.+....++-+...+..+..++.+
T Consensus 10 l~~~L~~L-~~s~~sI~~~s~w~l~h~~~---------a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 10 LDRKFQSV-TNTMESIQGLSSWCIENKKH---------HSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQN 70 (132)
T ss_dssp HHHHHHHC-CSSHHHHHHHHHHHHHTGGG---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-cccHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 44455555 44556677888888877422 355666677777777777777777777666633
No 183
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.37 E-value=2.4e+02 Score=20.94 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 043950 296 KVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV 375 (458)
Q Consensus 296 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 375 (458)
+.....|+.+|..+......+++ .+.+.+....+.-+..+++.+-.++.+....+... ...++.+.+.+....-
T Consensus 24 k~~I~~LT~~a~~~~~~a~~Iv~-----~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~-F~~~l~~~f~~~~~~~ 97 (144)
T 1sz9_A 24 RPIITTLTKLAEENISCAQYFVD-----AIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIY-FSRNLFNLYKRTYLLV 97 (144)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHH-----HHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHH-HHTTHHHHHHHHHHTS
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH-----HHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHHHHHHhC
Q ss_pred CHHHHHHHHHHHH
Q 043950 376 DPKIVTVCLEGLE 388 (458)
Q Consensus 376 ~~~v~~~~~~~l~ 388 (458)
++.++.+...++.
T Consensus 98 d~~~r~k~~rL~~ 110 (144)
T 1sz9_A 98 DNTTRTKLINMFK 110 (144)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
No 184
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.32 E-value=6e+02 Score=25.45 Aligned_cols=267 Identities=10% Similarity=0.009 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccC----------------------
Q 043950 167 SMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDE-EVLSDACWTLSYLSYG---------------------- 223 (458)
Q Consensus 167 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~~~~~~~~l~~l~~~---------------------- 223 (458)
.....|-|+...+....+........+++..+-.+.+.++. .-.......+..++..
T Consensus 249 ~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~L 328 (799)
T 1vsy_4 249 SYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICL 328 (799)
T ss_dssp SHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSC
T ss_pred chHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhhcC
Confidence 34455666666665432344445557777777777764431 1111122222222211
Q ss_pred ChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc--CChhhHHHHHHHH
Q 043950 224 TNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKVACWT 301 (458)
Q Consensus 224 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~v~~~a~~~ 301 (458)
.++..+.+++. +.+.+..-+.+.+..+...+..++.+|+.-.|.....++ .++++.+..-|.+ -.++.-...++.+
T Consensus 329 t~~~~~~fV~~-l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVl-P~vL~r~y~sLe~~~l~e~Hrl~~aL~~ 406 (799)
T 1vsy_4 329 TSFCHEEIVEI-FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIY-DKILIDLYDTLADQFINSRHRIISSLKQ 406 (799)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHH-HHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceeh-HHHHHHHHHHhccccccchhHHHHHHHH
Confidence 11122223322 445555556777888888999999999987773333333 3567777777776 2244444555666
Q ss_pred HHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCC-----C---HH-----HHHHHHHCCCh
Q 043950 302 ISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG-----T---HE-----QIKYLVREGCI 365 (458)
Q Consensus 302 l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-----~---~~-----~~~~l~~~~~l 365 (458)
+..++. ..+.....+.. ++..++.-+...|+.--..+...+..++..- + .. ....+.+. -+
T Consensus 407 l~~~~r~lv~~~~yr~hl~~--lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~-~~ 483 (799)
T 1vsy_4 407 FTRVIRFIVMDKLYRVHITN--VLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQ-HF 483 (799)
T ss_dssp HHTTHHHHTTSTTGGGHHHH--HHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHH-HH
T ss_pred HHHHHHHHhcCcccHHHHHH--HHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhh-hh
Confidence 665553 11111111111 1222222223345554455566665554311 0 00 00000000 00
Q ss_pred HHHHh----------------hccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC
Q 043950 366 KPLCD----------------LLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH 429 (458)
Q Consensus 366 ~~L~~----------------ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 429 (458)
..+-. .+.......-..+...+.+++..-+... .+.+.. +....+..+..+
T Consensus 484 ~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~--------Ee~l~~-----~l~~~~~~l~~~ 550 (799)
T 1vsy_4 484 YHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDL--------EDSLVT-----KINQTTMILQES 550 (799)
T ss_dssp HHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCC--------CTHHHH-----HHHHHHHHHHHT
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--------hHHHHH-----HHHHHHHHHHHh
Confidence 00000 0000111133445555666666555421 111222 235566777888
Q ss_pred CChHHHHHHHHHHHHhcCCCCC
Q 043950 430 DNNGIREKAVKILETYWCGRVV 451 (458)
Q Consensus 430 ~~~~v~~~a~~~l~~~~~~~~~ 451 (458)
-++++++.+.+-+.+|+.....
T Consensus 551 lS~~if~~~l~k~~~fv~~n~~ 572 (799)
T 1vsy_4 551 MDDKIFNYFASLLNRNFWSNDS 572 (799)
T ss_dssp BCHHHHHHHHHHHHHHHHSCSC
T ss_pred CCHHHHHHHHHHHHHHHHHhhh
Confidence 8999999998888888766654
No 185
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=21.10 E-value=1.3e+02 Score=17.11 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=24.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI 106 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 106 (458)
.+..|++.|++++.++-+.+.+.+|. .+|.....++
T Consensus 2 aLqqLl~tlksp~sp~qqqqvl~ILk----snPqLMAAfI 37 (47)
T 1zoq_C 2 ALQDLLRTLKSPSSPQQQQQVLNILK----SNPQLMAAFI 37 (47)
T ss_dssp HHHHHHHTCCSCCCHHHHHHHHHHHH----TCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH----cCHHHHHHHH
Confidence 35678888888887888887776654 3555444443
No 186
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.67 E-value=2.7e+02 Score=20.81 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=52.1
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc--ccHHHH
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLAS------PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH--AKLSML 169 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~ 169 (458)
.......+++.|++..+-..|.. ++..+|+..+.+|.++- ..++.+.+.|. ...+..+..+ ..++.+
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~Sgl-Gkvv~~l~k~~~et~~nk 124 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGV-GKIVYFYSINPKESKEVR 124 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCH-HHHHHHHHHCTTSCHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCC-CcchhhhhcCCccCHHHH
Confidence 35567788889999999999874 67899999999999983 33555666654 4444455444 345666
Q ss_pred HHHHHHHHH
Q 043950 170 RIATWTLSK 178 (458)
Q Consensus 170 ~~a~~~l~~ 178 (458)
+.|-..+..
T Consensus 125 ~la~~Li~~ 133 (145)
T 2xpp_A 125 ASAKALVQK 133 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555444
Done!