BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043952
         (181 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
           Ruthenium Organometallic Ligand Ru1
 pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
           Ruthenium Organometallic Ligand Ru1
          Length = 312

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 52  SPPFKTGDAQFACIVEITWTLAYLIYDLVC 81
           SPP      Q+  +    W+L  L+YD+VC
Sbjct: 205 SPPEWISRHQYHALPATVWSLGILLYDMVC 234


>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
           Arabidopsis Fimbrin
 pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
           Arabidopsis Fimbrin
          Length = 506

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 123 LKELGYRDTGLNLTADVTFAAIFTFARMVCEP-HLTYLTPSARNPI 167
           LK+ GY+ T  N +AD+  A  + F   V  P H    T  A++P+
Sbjct: 165 LKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPL 210


>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
          Length = 295

 Score = 26.9 bits (58), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 83  SFDQRVNVDNTIHHLISI---VGIGAGLVYEKISSPFLHCREMLKELGYRDTGLNLTADV 139
           +F ++ N DNT+   I++   +  G  L ++   SP    +    + GY+   +NL  DV
Sbjct: 82  TFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDV 141

Query: 140 TF 141
            F
Sbjct: 142 DF 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,612,954
Number of Sequences: 62578
Number of extensions: 166472
Number of successful extensions: 303
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 3
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)