BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043952
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2
Length = 245
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 23/158 (14%)
Query: 16 WTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTS---------PPFKTGDAQFACIV 66
W ++++ + +RS+ + RLV+ H L++ L++ P G V
Sbjct: 16 WLSLYISFCHLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQV 75
Query: 67 EI-TWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGI-------------GAGLVYEKI 112
+ TL Y I+DL C + Q HH +SI+GI A L ++
Sbjct: 76 HVLCLTLGYFIFDLGWCVYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSEL 135
Query: 113 SSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARM 150
++P L R L+E G+ + D F A+FT R+
Sbjct: 136 TNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRI 173
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1
Length = 245
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 26/172 (15%)
Query: 29 NRSFNFCSRLVSTIHATLAVTLTS---------PPFKTGDAQFACIVEI-TWTLAYLIYD 78
+RS + RLV+ H L++ L++ P G V + TL Y I+D
Sbjct: 29 HRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFD 88
Query: 79 LVCCSFDQRVNVDNTIHHLISIVGI-------------GAGLVYEKISSPFLHCREMLKE 125
L C + Q HH +SI+GI A L +I++P L R L+E
Sbjct: 89 LGWCIYFQSEGPLMLAHHTLSILGIIMALALGESGTEVNAVLFGSEITNPLLQMRWFLRE 148
Query: 126 LGYRDTGLNLTADVTFAAIFTFARMVCEPHLTY---LTPSARNPIIIKAMAL 174
G+ + D F A+FT R+ HL + ++P+ + + + +A+
Sbjct: 149 TGHYHSFTGDVVDFLFVALFTGVRIGVGAHLLFCEMVSPTPKWFVKVGGVAM 200
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
Length = 245
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 16 WTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTS---------PPFKTGDAQFACIV 66
W ++++ ++ +RS+ + RLV+ H L++ L++ P G V
Sbjct: 16 WLSLYVSFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQV 75
Query: 67 EI-TWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVY-------------EKI 112
+ TL Y I+DL C + + HH +SI+GI LV +I
Sbjct: 76 HVLCLTLGYFIFDLGWCIYFRSEGPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEI 135
Query: 113 SSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARM 150
++P L R L+E G+ + D F A+FT R+
Sbjct: 136 TNPLLQIRWFLRETGHYHSFTGDVVDFLFVALFTGVRI 173
>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1
Length = 242
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 25/165 (15%)
Query: 29 NRSFNFCSRLVSTIHATLAVTLTS--------PPF---KTGDAQFACIVEITWTLAYLIY 77
R + RLV+ H L + LT+ PF T + F I+ + +L Y ++
Sbjct: 28 GRDSEWNCRLVTLFHGILIICLTAYIGFIAGPWPFTHPGTENTYFQ-ILTLVLSLGYFLF 86
Query: 78 DLVCCSFDQRVNVDNTIHHLISIVGI----GAG---------LVYEKISSPFLHCREMLK 124
D+ C + + HH +SI GI G G L +I++P L R LK
Sbjct: 87 DMAWCVYFRTEGPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSEITNPLLQARWFLK 146
Query: 125 ELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTPSARNPIII 169
+G D+ D+ F +F R+ + Y ++ P +I
Sbjct: 147 RMGCYDSLAGDVVDLLFILLFASVRIGVGSRMLYCELTSPKPSLI 191
>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1
Length = 264
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 28/156 (17%)
Query: 25 KIFPNRSFNFCSRLVSTIHATLAV-----------TLTSPPFKTGDAQFACIVEITWTLA 73
K+ PN+ ++ SRLVST+HA + + P GD + + T
Sbjct: 37 KLPPNKLNDWNSRLVSTVHALIVGLFCLYILWYDDAVNEDPV-WGDPNLVKL-NVAITCG 94
Query: 74 YLIYD--LVCCSFDQRVNVDNTIHHLISIVGIGAGL------------VYEKISSPFLHC 119
YL YD L+ C++ +V HHL ++ G L + ++S+PF++
Sbjct: 95 YLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPYFANFRLISELSTPFVNQ 154
Query: 120 REMLKELGY-RDTGLNLTADVTFAAIFTFARMVCEP 154
R + L Y R L + + A +F R+ P
Sbjct: 155 RWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMP 190
>sp|Q5L567|RL9_CHLAB 50S ribosomal protein L9 OS=Chlamydophila abortus (strain S26/3)
GN=rplI PE=3 SV=1
Length = 172
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 63 ACIVEITWTLAYLIYDLVCCSFDQRVNVDNTIHHLISIVGIGAGLVYEKI---SSPFLHC 119
A E + LA ++ D+V F RV+ DN ++ +++ I A + I F H
Sbjct: 61 AADREESEKLAQILKDIVL-EFQVRVDPDNNMYGSVTVSDIIAEAAKKNIVLTRKNFPHA 119
Query: 120 REMLKELGYRDTGLNLTADVT 140
+K LG + L L DVT
Sbjct: 120 HYAIKNLGKKSVPLKLKEDVT 140
>sp|P35341|L_SV41 RNA-directed RNA polymerase L OS=Simian virus 41 GN=L PE=3 SV=1
Length = 2269
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 12 VVVLWTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTG-DAQFACIVEITW 70
+V LW + +R++ N+S CS LV + + + +P T D + ++ T+
Sbjct: 178 LVSLWLTIKYQMRQMIANQSKRTCSELVYVVDTRSGIIIITPELVTCFDKDHSVLMYFTF 237
Query: 71 TLAYLIYDLVCCSFDQRVNV 90
+ +I DL F+ R+NV
Sbjct: 238 EMVLMISDL----FEGRMNV 253
>sp|Q04Z09|MURD_LEPBL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=murD PE=3 SV=1
Length = 462
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 71 TLAYLIYDLVCCSFDQRVNVDNTIHHLISIV 101
T++Y ++ C SFDQ N + +H +S+V
Sbjct: 422 TISYFVFSPACVSFDQYKNFEERGNHFLSLV 452
>sp|Q04UG6|MURD_LEPBJ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=murD PE=3 SV=1
Length = 462
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 71 TLAYLIYDLVCCSFDQRVNVDNTIHHLISIV 101
T++Y ++ C SFDQ N + +H +S+V
Sbjct: 422 TISYFVFSPACVSFDQYKNFEERGNHFLSLV 452
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.142 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,455,122
Number of Sequences: 539616
Number of extensions: 2366418
Number of successful extensions: 5286
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5275
Number of HSP's gapped (non-prelim): 12
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)