Query 043952
Match_columns 181
No_of_seqs 112 out of 503
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4474 Uncharacterized conser 99.9 6.3E-26 1.4E-30 186.1 11.4 171 7-178 18-216 (253)
2 smart00724 TLC TRAM, LAG1 and 99.9 2.6E-25 5.6E-30 178.0 10.4 133 29-161 1-159 (205)
3 PF03798 TRAM_LAG1_CLN8: TLC d 99.9 3.2E-24 6.9E-29 169.3 10.7 129 33-161 1-159 (198)
4 KOG4561 Uncharacterized conser 99.9 3.3E-23 7.2E-28 173.2 1.3 134 25-161 62-222 (281)
5 COG5058 LAG1 Protein transport 94.5 0.22 4.7E-06 43.3 8.0 114 32-149 155-302 (395)
6 KOG1607 Protein transporter of 93.1 1 2.2E-05 39.1 9.6 86 70-157 141-240 (318)
7 PF00558 Vpu: Vpu protein; In 51.1 11 0.00023 26.3 1.6 24 11-34 18-41 (81)
8 PHA02690 hypothetical protein; 31.4 1E+02 0.0022 21.4 3.9 34 110-152 31-64 (90)
9 PRK00523 hypothetical protein; 31.2 54 0.0012 22.3 2.5 21 112-132 34-58 (72)
10 PLN02434 fatty acid hydroxylas 22.8 4.5E+02 0.0097 21.9 7.6 23 62-84 162-184 (237)
11 PF15559 DUF4660: Domain of un 22.3 25 0.00054 25.7 -0.4 12 29-40 55-66 (108)
12 PF14150 YesK: YesK-like prote 21.5 2E+02 0.0043 19.9 4.0 27 21-47 17-43 (81)
13 COG3311 AlpA Predicted transcr 20.8 83 0.0018 21.2 2.0 26 111-136 8-33 (70)
No 1
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=6.3e-26 Score=186.14 Aligned_cols=171 Identities=26% Similarity=0.347 Sum_probs=141.3
Q ss_pred HHHHHHHHH-HHHHHHHHhhhCCCCccceeeehhHHHHHHHHHHhhhhhcccCCCCc-chh---------HHHHHHHHHH
Q 043952 7 KLVVIVVVL-WTAVFLFIRKIFPNRSFNFCSRLVSTIHATLAVTLTSPPFKTGDAQF-ACI---------VEITWTLAYL 75 (181)
Q Consensus 7 ~~~~~s~~~-w~~~~~~~~~l~~~~~~~w~~r~vS~~Ha~i~~~~~~~~~~~~~~~~-~~~---------~~~~~s~GYF 75 (181)
.+.+.+.++ |...+.-.|+.++.|+.+|.|+.||.+||++++.++.+++.. +|+. .+| .+.++|+|||
T Consensus 18 ~i~~~~~~~~w~~~f~~~~~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~-~~~~~~~~~~~~s~~~~~l~~fS~gYf 96 (253)
T KOG4474|consen 18 SIVVYSALFGWGLIFFDVRWFSVYQKKRFSNLTVSLLHSTISGLWALLSLLY-DPEMVDDPITYHSLSAYQLLLFSAGYF 96 (253)
T ss_pred hhhHHHHHhhcceeeeeeEeeccccchhhhhhHHHHHHHHHHHHHHHHHHHh-CcccccCHHHHHhhhhHHHHHHHHHHH
Confidence 344555555 766555555566777999999999999999999999999884 4422 222 4889999999
Q ss_pred HHHHHHHhhcc--CCChhhHHHHHHHHHHHHHHHhh------------cccccHhHhHHHHHHHcCCCCC-hHHHHHHHH
Q 043952 76 IYDLVCCSFDQ--RVNVDNTIHHLISIVGIGAGLVY------------EKISSPFLHCREMLKELGYRDT-GLNLTADVT 140 (181)
Q Consensus 76 ~~Dl~~~~~~~--~~~~~~l~HH~~~i~~~~~~l~~------------~e~Stpfln~R~~l~~~g~~~s-~~y~~n~~l 140 (181)
+||++++..++ ...++.++||++++.++..+++. .|+||||+|.|.+++..|.+++ +.++++..+
T Consensus 97 iyD~vDm~~~~~s~~s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~l 176 (253)
T KOG4474|consen 97 IYDLVDMLMNEQSELSWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYL 176 (253)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHH
Confidence 99999999887 55699999999999999886544 4799999999999999999664 459999999
Q ss_pred HHHHHHHHhhcchhhhheeeccC--CCchhHhhhhhhhhh
Q 043952 141 FAAIFTFARMVCEPHLTYLTPSA--RNPIIIKAMALGLQL 178 (181)
Q Consensus 141 ~~~~F~~~Ri~~~p~~~y~~~~~--~~~~~~k~~~~gl~~ 178 (181)
++++|+++|.+...|++++.+.+ +.|++.|+.+.|..+
T Consensus 177 N~i~f~~fR~~~~~~l~~~~i~~~~~~~~~~~~~~~gg~~ 216 (253)
T KOG4474|consen 177 NLITFFFFRLIPQIYLTYFLIANAPFLHWYLKLFALGGLL 216 (253)
T ss_pred HHHHHHHHHhccceeEEEEEeeeCCCcceehhHHHhhhHH
Confidence 99999999999999999888864 788999988877543
No 2
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.92 E-value=2.6e-25 Score=178.01 Aligned_cols=133 Identities=26% Similarity=0.318 Sum_probs=112.2
Q ss_pred CCccceeeehhHHHHHHHHHHhhhhhccc-CC-----CCcc----hhHHHHHHHHHHHHHHHHHhhcc----CCChhhHH
Q 043952 29 NRSFNFCSRLVSTIHATLAVTLTSPPFKT-GD-----AQFA----CIVEITWTLAYLIYDLVCCSFDQ----RVNVDNTI 94 (181)
Q Consensus 29 ~~~~~w~~r~vS~~Ha~i~~~~~~~~~~~-~~-----~~~~----~~~~~~~s~GYF~~Dl~~~~~~~----~~~~~~l~ 94 (181)
+|+.||++|++|.+||++++..+++.... .| |... .....++++|||++|++.|..++ +++++|++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~~~~~ 80 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFKEMLV 80 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 57889999999999999999999887762 22 2111 11688999999999999998422 23799999
Q ss_pred HHHHHHHHHHHH------------HhhcccccHhHhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhhcchhhhheeec
Q 043952 95 HHLISIVGIGAG------------LVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLTYLTP 161 (181)
Q Consensus 95 HH~~~i~~~~~~------------l~~~e~Stpfln~R~~l~~~g~~~s~~y~~n~~l~~~~F~~~Ri~~~p~~~y~~~ 161 (181)
||++++.++..+ +...|+||||+|.||++++.|+++++.+..|+.+|+++|+.+|++.+|+..+...
T Consensus 81 HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~~~~ 159 (205)
T smart00724 81 HHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILTVT 159 (205)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877653 3556899999999999999999999999999999999999999999999988755
No 3
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.91 E-value=3.2e-24 Score=169.29 Aligned_cols=129 Identities=26% Similarity=0.402 Sum_probs=108.4
Q ss_pred ceeeehhHHHHHHHHHHhhhhhcccCC------C--Ccch-h----HHHHHHHHHHHHHHHHHhhcc-CC-C-hhhHHHH
Q 043952 33 NFCSRLVSTIHATLAVTLTSPPFKTGD------A--QFAC-I----VEITWTLAYLIYDLVCCSFDQ-RV-N-VDNTIHH 96 (181)
Q Consensus 33 ~w~~r~vS~~Ha~i~~~~~~~~~~~~~------~--~~~~-~----~~~~~s~GYF~~Dl~~~~~~~-~~-~-~~~l~HH 96 (181)
||++|.+|.+|+++++.+|.+++..++ | .+.. + ...++++|||++|+..+...+ .. | ++|++||
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~HH 80 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLHH 80 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHH
Confidence 699999999999999999999998543 1 1211 1 478999999999999999743 22 3 8999999
Q ss_pred HHHHHHHHHHH------------hhcccccHhHhHHHHHHHc-CC-CCChHHHHHHHHHHHHHHHHhhcchhhhheeec
Q 043952 97 LISIVGIGAGL------------VYEKISSPFLHCREMLKEL-GY-RDTGLNLTADVTFAAIFTFARMVCEPHLTYLTP 161 (181)
Q Consensus 97 ~~~i~~~~~~l------------~~~e~Stpfln~R~~l~~~-g~-~~s~~y~~n~~l~~~~F~~~Ri~~~p~~~y~~~ 161 (181)
++++.++..++ ...|+||||+|.||++++. |+ ++++.+..|+.+|+++|+++|++..|+..+..+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~ 159 (198)
T PF03798_consen 81 VVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY 159 (198)
T ss_pred HHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776643 4568999999999999999 66 688999999999999999999999999876654
No 4
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.86 E-value=3.3e-23 Score=173.21 Aligned_cols=134 Identities=17% Similarity=0.232 Sum_probs=103.9
Q ss_pred hhCCCCcccee-eehhHHHHHHHHHHhhhhhcccCCC-C---c-------chhHHHHHHHHHHHHHHHH-Hh-hccCCCh
Q 043952 25 KIFPNRSFNFC-SRLVSTIHATLAVTLTSPPFKTGDA-Q---F-------ACIVEITWTLAYLIYDLVC-CS-FDQRVNV 90 (181)
Q Consensus 25 ~l~~~~~~~w~-~r~vS~~Ha~i~~~~~~~~~~~~~~-~---~-------~~~~~~~~s~GYF~~Dl~~-~~-~~~~~~~ 90 (181)
.+.++++.||| +|.||++|++++. ++|.++-.+. + + .+.-....-.|||+.|+.. +. ++...|.
T Consensus 62 ~l~~k~~i~wn~~~~Vs~~hslv~~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~~~ 139 (281)
T KOG4561|consen 62 SLDKKLKIEWNCVRVVSTVHSLVSS--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVGIGYFIPDLTWIIVRYFVLGGI 139 (281)
T ss_pred hhcCcEEEEEecCceeeeehHhhhc--ccceeecCcccchhhhhccceeecceeeccccceEecccceeEEEEeeeecCe
Confidence 37788999999 9999999999998 7777762211 1 1 1111111115699999964 33 3567899
Q ss_pred hhHHHHHHHHHHHHH-------------HHhhcccccHhHhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhhcchhhhh
Q 043952 91 DNTIHHLISIVGIGA-------------GLVYEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVCEPHLT 157 (181)
Q Consensus 91 ~~l~HH~~~i~~~~~-------------~l~~~e~Stpfln~R~~l~~~g~~~s~~y~~n~~l~~~~F~~~Ri~~~p~~~ 157 (181)
+|++||.++ ..+.. ..+..|+||||+|+||++.++|+|+|+.|++||++++++|++||++.-|++.
T Consensus 140 ~fviHh~~s-~~~v~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~ 218 (281)
T KOG4561|consen 140 EFVIHHIAS-LVFVGCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYMG 218 (281)
T ss_pred eEEeeHHHH-hhhheeeEecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999988 21111 3466799999999999999999999999999999999999999999888887
Q ss_pred eeec
Q 043952 158 YLTP 161 (181)
Q Consensus 158 y~~~ 161 (181)
|.++
T Consensus 219 ~~~~ 222 (281)
T KOG4561|consen 219 WHYY 222 (281)
T ss_pred HHHH
Confidence 7755
No 5
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=94.52 E-value=0.22 Score=43.27 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=69.5
Q ss_pred cceeeehhHHHHHHHHHHhhhhhcccCCCCc--------------chhH----HHHHHHHHHHHHHHHHh--h--ccCCC
Q 043952 32 FNFCSRLVSTIHATLAVTLTSPPFKTGDAQF--------------ACIV----EITWTLAYLIYDLVCCS--F--DQRVN 89 (181)
Q Consensus 32 ~~w~~r~vS~~Ha~i~~~~~~~~~~~~~~~~--------------~~~~----~~~~s~GYF~~Dl~~~~--~--~~~~~ 89 (181)
...+-..=+.+--.+++.+|+|++.. .|-| ..|. .--+=.||.+....... . ++++-
T Consensus 155 kRf~eq~y~~fyy~v~g~~Glyvmrs-s~~w~fntk~l~etyp~~~~p~lfk~fYliqaafw~qQa~ilvLqlEkprkD~ 233 (395)
T COG5058 155 KRFCEQMYAIFYYGVSGPFGLYVMRS-SPLWFFNTKALYETYPVFYNPFLFKAFYLIQAAFWAQQACILVLQLEKPRKDF 233 (395)
T ss_pred HHHHHHHHHHHHhhccccceEEEEec-CcchhhhhHHHHHhCccccCcHHHHHHHHHHHHHHHHHHhhheeeecchhhhH
Confidence 34444455666666777788887762 3333 2231 12234666666632222 1 34445
Q ss_pred hhhHHHHHHHHHHHHHHHh------------hcccccHhHhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHh
Q 043952 90 VDNTIHHLISIVGIGAGLV------------YEKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFAR 149 (181)
Q Consensus 90 ~~~l~HH~~~i~~~~~~l~------------~~e~Stpfln~R~~l~~~g~~~s~~y~~n~~l~~~~F~~~R 149 (181)
++|+.||+++++-...+.. ...+|-|||...+.++-.|- .+-...-.+|+..|+-.|
T Consensus 234 ~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~---~l~~~iF~iFv~~wIysR 302 (395)
T COG5058 234 KELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS---VLATFIFGIFVFIWIYSR 302 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHH
Confidence 8999999998875544332 22399999999988866653 444444566777777777
No 6
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=1 Score=39.07 Aligned_cols=86 Identities=20% Similarity=0.329 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhh--ccCCChhhHHHHHHHHHHHHHHHhhc------------ccccHhHhHHHHHHHcCCCCChHHH
Q 043952 70 WTLAYLIYDLVCCSF--DQRVNVDNTIHHLISIVGIGAGLVYE------------KISSPFLHCREMLKELGYRDTGLNL 135 (181)
Q Consensus 70 ~s~GYF~~Dl~~~~~--~~~~~~~~l~HH~~~i~~~~~~l~~~------------e~Stpfln~R~~l~~~g~~~s~~y~ 135 (181)
+=+|+-..-+..+.. .+++-++|++||+++++-...+...+ ..|-+++...+.++-.|.+ ..-.
T Consensus 141 ~e~gfY~~~l~al~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~ 218 (318)
T KOG1607|consen 141 LEAGFYIQLLFALFLDEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIAD 218 (318)
T ss_pred HhhHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHH
Confidence 446666666665553 33445899999999988555543322 2899999998877655543 4555
Q ss_pred HHHHHHHHHHHHHhhcchhhhh
Q 043952 136 TADVTFAAIFTFARMVCEPHLT 157 (181)
Q Consensus 136 ~n~~l~~~~F~~~Ri~~~p~~~ 157 (181)
..-.+|+..|+..|+...|...
T Consensus 219 ~~F~~F~~~wi~~RL~~~p~wi 240 (318)
T KOG1607|consen 219 FVFVLFAFSWIYTRLIYYPFWI 240 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6668889999999988888754
No 7
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=51.09 E-value=11 Score=26.30 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCccce
Q 043952 11 IVVVLWTAVFLFIRKIFPNRSFNF 34 (181)
Q Consensus 11 ~s~~~w~~~~~~~~~l~~~~~~~w 34 (181)
+..+.|+.+|.-.++..+++|+++
T Consensus 18 iaIvvW~iv~ieYrk~~rqrkId~ 41 (81)
T PF00558_consen 18 IAIVVWTIVYIEYRKIKRQRKIDR 41 (81)
T ss_dssp HHHHHHHHH------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 377899999999999999888876
No 8
>PHA02690 hypothetical protein; Provisional
Probab=31.40 E-value=1e+02 Score=21.43 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=26.3
Q ss_pred cccccHhHhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhhcc
Q 043952 110 EKISSPFLHCREMLKELGYRDTGLNLTADVTFAAIFTFARMVC 152 (181)
Q Consensus 110 ~e~Stpfln~R~~l~~~g~~~s~~y~~n~~l~~~~F~~~Ri~~ 152 (181)
-|=|||.+..-|-+ +|...-..|.+.++++|.++
T Consensus 31 lEgs~plLR~~~Rl---------LfDL~lTvfV~myiv~Rl~~ 64 (90)
T PHA02690 31 LEGSTPLLRQMWRL---------LFDLLLTVFVVMYIVFRLIW 64 (90)
T ss_pred HhcCCHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 35678877665544 78888899999999999874
No 9
>PRK00523 hypothetical protein; Provisional
Probab=31.22 E-value=54 Score=22.30 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=16.5
Q ss_pred cc-cHhHh---HHHHHHHcCCCCCh
Q 043952 112 IS-SPFLH---CREMLKELGYRDTG 132 (181)
Q Consensus 112 ~S-tpfln---~R~~l~~~g~~~s~ 132 (181)
+. ||++| +|..+.+.|+|+|.
T Consensus 34 l~~NPpine~mir~M~~QMGqKPSe 58 (72)
T PRK00523 34 IRENPPITENMIRAMYMQMGRKPSE 58 (72)
T ss_pred HHHCcCCCHHHHHHHHHHhCCCccH
Confidence 55 99998 57778889998764
No 10
>PLN02434 fatty acid hydroxylase
Probab=22.78 E-value=4.5e+02 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=17.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh
Q 043952 62 FACIVEITWTLAYLIYDLVCCSF 84 (181)
Q Consensus 62 ~~~~~~~~~s~GYF~~Dl~~~~~ 84 (181)
+..++.....+||..||......
T Consensus 162 ~a~~~~~G~l~gYl~Yd~~Hy~l 184 (237)
T PLN02434 162 TAPALFGGGLLGYVMYDCTHYFL 184 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566789999999999874
No 11
>PF15559 DUF4660: Domain of unknown function (DUF4660)
Probab=22.31 E-value=25 Score=25.75 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=10.2
Q ss_pred CCccceeeehhH
Q 043952 29 NRSFNFCSRLVS 40 (181)
Q Consensus 29 ~~~~~w~~r~vS 40 (181)
+||+||.+|+|+
T Consensus 55 nKqIDWe~~vvk 66 (108)
T PF15559_consen 55 NKQIDWERRVVK 66 (108)
T ss_pred ccccchhHhhcc
Confidence 588999999775
No 12
>PF14150 YesK: YesK-like protein
Probab=21.46 E-value=2e+02 Score=19.94 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=16.6
Q ss_pred HHHhhhCCCCccceeeehhHHHHHHHH
Q 043952 21 LFIRKIFPNRSFNFCSRLVSTIHATLA 47 (181)
Q Consensus 21 ~~~~~l~~~~~~~w~~r~vS~~Ha~i~ 47 (181)
...|+..|+||+||.--.+..+=++.+
T Consensus 17 ~~lr~r~p~k~~~~il~~ililis~~~ 43 (81)
T PF14150_consen 17 VLLRKRFPKKQPEIILPLILILISLLT 43 (81)
T ss_pred HHHHHhCCCcchhHHHHHHHHHHHHHH
Confidence 456777888889987654444433333
No 13
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=20.80 E-value=83 Score=21.21 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=23.0
Q ss_pred ccccHhHhHHHHHHHcCCCCChHHHH
Q 043952 111 KISSPFLHCREMLKELGYRDTGLNLT 136 (181)
Q Consensus 111 e~Stpfln~R~~l~~~g~~~s~~y~~ 136 (181)
+.+++++.++..+..+|++.+.+|..
T Consensus 8 ~~~~r~lrl~ev~~~~GlSrstiYr~ 33 (70)
T COG3311 8 RHTDRLLRLPEVAQLTGLSRSTIYRL 33 (70)
T ss_pred cccchhhhHHHHHHHHCccHHHHHHH
Confidence 46889999999999999999888865
Done!