Query 043952
Match_columns 181
No_of_seqs 112 out of 503
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pi7_A VPU protein, U ORF prot 21.0 97 0.0033 17.3 2.9 19 11-29 17-35 (36)
2 2k9p_A Pheromone alpha factor 11.0 1.8E+02 0.0062 19.0 2.6 23 121-145 40-62 (80)
3 3jqo_C TRAN protein; helical o 9.2 96 0.0033 17.0 0.6 12 27-38 6-17 (34)
4 3m31_A Endoplasmic oxidoreduct 7.0 2.1E+02 0.0071 24.5 2.0 28 35-62 184-211 (388)
5 2ls4_A High affinity copper up 5.2 2.2E+02 0.0076 14.6 0.0 10 69-78 12-21 (26)
6 3ahq_A ERO1-like protein alpha 3.5 4.3E+02 0.015 23.0 1.7 21 36-56 245-265 (465)
7 2l8s_A Integrin alpha-1; trans 2.7 1.1E+03 0.036 14.1 4.3 18 7-24 14-31 (54)
8 1pgy_A SWA2P; UBA, ubiquitin, 2.6 4.7E+02 0.016 15.2 0.6 10 168-177 11-20 (47)
9 3ukx_C Bimax2 peptide; arm rep 2.5 5E+02 0.017 13.1 0.6 10 27-36 7-16 (28)
10 3bkd_A Transmembrane domain of 2.5 7.6E+02 0.026 12.4 1.3 13 164-176 2-14 (26)
No 1
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=21.03 E-value=97 Score=17.29 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhhCCC
Q 043952 11 IVVVLWTAVFLFIRKIFPN 29 (181)
Q Consensus 11 ~s~~~w~~~~~~~~~l~~~ 29 (181)
...+.|+..|.-.|++.++
T Consensus 17 iaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 17 IAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3678999999988877654
No 2
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=10.99 E-value=1.8e+02 Score=19.04 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=17.0
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHH
Q 043952 121 EMLKELGYRDTGLNLTADVTFAAIF 145 (181)
Q Consensus 121 ~~l~~~g~~~s~~y~~n~~l~~~~F 145 (181)
|++.+ +|+|+++..|+...++..
T Consensus 40 ~lltk--krrspiF~lN~~~L~l~i 62 (80)
T 2k9p_A 40 WITSR--SRKTPIFIINQVSLFLII 62 (80)
T ss_dssp HHHTC--CSCCCHHHHHHHHHHHHH
T ss_pred HHHhc--cccChhhHHHHHHHHHHH
Confidence 44443 678999999999886654
No 3
>3jqo_C TRAN protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli} PDB: 2ofq_B
Probab=9.19 E-value=96 Score=17.05 Aligned_cols=12 Identities=8% Similarity=0.205 Sum_probs=8.5
Q ss_pred CCCCccceeeeh
Q 043952 27 FPNRSFNFCSRL 38 (181)
Q Consensus 27 ~~~~~~~w~~r~ 38 (181)
.+++..||.||+
T Consensus 6 kp~pepd~~n~V 17 (34)
T 3jqo_C 6 KPPPEPDWSNTV 17 (34)
T ss_dssp CCCCCCCCSSEE
T ss_pred CCCCCCcccccc
Confidence 456777888775
No 4
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond, electron transport, endopl reticulum, FAD, flavoprotein, glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae} SCOP: a.227.1.1 PDB: 1rp4_A* 1rq1_A* 3nvj_A*
Probab=7.02 E-value=2.1e+02 Score=24.47 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=21.0
Q ss_pred eeehhHHHHHHHHHHhhhhhcccCCCCc
Q 043952 35 CSRLVSTIHATLAVTLTSPPFKTGDAQF 62 (181)
Q Consensus 35 ~~r~vS~~Ha~i~~~~~~~~~~~~~~~~ 62 (181)
-.|++|.+||.|++=++..-+....+.|
T Consensus 184 FyrLISGlHaSIs~Hl~~~yl~~~~~~w 211 (388)
T 3m31_A 184 FYRLVSGFHASIGTHLSKEYLNTKTGKW 211 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHSEECTTTCCE
T ss_pred HHHHhhhhHHHHHHHHHHHHhCccCCCc
Confidence 3689999999999999866554333456
No 5
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=5.16 E-value=2.2e+02 Score=14.57 Aligned_cols=10 Identities=10% Similarity=0.388 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q 043952 69 TWTLAYLIYD 78 (181)
Q Consensus 69 ~~s~GYF~~D 78 (181)
.-.+|||+++
T Consensus 12 Ga~~Gyf~F~ 21 (26)
T 2ls4_A 12 GAGTGYFLFS 21 (26)
Confidence 3457887764
No 6
>3ahq_A ERO1-like protein alpha; disulfide bond, PDI, redox, hyperactive human ERO1, oxidored; HET: FAD; 2.35A {Homo sapiens} PDB: 3ahr_A*
Probab=3.46 E-value=4.3e+02 Score=23.03 Aligned_cols=21 Identities=33% Similarity=0.505 Sum_probs=17.5
Q ss_pred eehhHHHHHHHHHHhhhhhcc
Q 043952 36 SRLVSTIHATLAVTLTSPPFK 56 (181)
Q Consensus 36 ~r~vS~~Ha~i~~~~~~~~~~ 56 (181)
.|++|.+||.|++=++..-+.
T Consensus 245 yRLISGLHaSIs~Hl~~~Yl~ 265 (465)
T 3ahq_A 245 YRLISGLHASINVHLSARYLL 265 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999876544
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=2.73 E-value=1.1e+03 Score=14.13 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043952 7 KLVVIVVVLWTAVFLFIR 24 (181)
Q Consensus 7 ~~~~~s~~~w~~~~~~~~ 24 (181)
.-++.+..+..++-....
T Consensus 14 ~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445556655544443
No 8
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=2.57 E-value=4.7e+02 Score=15.21 Aligned_cols=10 Identities=50% Similarity=0.830 Sum_probs=7.9
Q ss_pred hHhhhhhhhh
Q 043952 168 IIKAMALGLQ 177 (181)
Q Consensus 168 ~~k~~~~gl~ 177 (181)
+.|+|++||-
T Consensus 11 iAkLMSLGl~ 20 (47)
T 1pgy_A 11 IARLMSLGLS 20 (47)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHccCC
Confidence 7788888874
No 9
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=2.52 E-value=5e+02 Score=13.12 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=5.8
Q ss_pred CCCCccceee
Q 043952 27 FPNRSFNFCS 36 (181)
Q Consensus 27 ~~~~~~~w~~ 36 (181)
.++++.||+.
T Consensus 7 rrkrkrewdd 16 (28)
T 3ukx_C 7 RRKRKREWDD 16 (28)
T ss_dssp CCCCCCCCCC
T ss_pred HHHhhccccc
Confidence 3456667753
No 10
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=2.49 E-value=7.6e+02 Score=12.42 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=7.9
Q ss_pred CCchhHhhhhhhh
Q 043952 164 RNPIIIKAMALGL 176 (181)
Q Consensus 164 ~~~~~~k~~~~gl 176 (181)
+.|++.-+..+|+
T Consensus 2 sDplv~aa~iiGi 14 (26)
T 3bkd_A 2 SDPLVVAASIMGI 14 (26)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCcchhHHHHHHH
Confidence 4566666666665
Done!