Query 043952
Match_columns 181
No_of_seqs 112 out of 503
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 17:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043952.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043952hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rp4a_ a.227.1.1 (A:) Endopla 7.2 85 0.0062 24.7 1.7 27 36-62 171-197 (374)
2 d2odgc1 a.140.1.1 (C:2-47) Inn 4.4 2.4E+02 0.017 15.1 2.0 15 119-133 11-25 (46)
3 d2i5nh2 f.23.10.1 (H:1-36) Pho 4.0 2.8E+02 0.021 13.5 3.3 23 2-24 11-33 (36)
4 d1mkma1 a.4.5.33 (A:1-75) Tran 3.8 2E+02 0.014 16.3 1.5 28 113-140 17-44 (75)
5 d1zela1 a.4.5.83 (A:1-82) Hypo 3.1 1.6E+02 0.012 17.0 0.5 13 30-42 10-22 (82)
6 d1pgya_ a.5.2.1 (A:) Auxilin-l 2.7 2.1E+02 0.015 15.2 0.6 11 167-177 10-20 (47)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 2.5 3.3E+02 0.024 15.9 1.5 15 67-81 49-63 (75)
8 d1o82a_ a.64.2.1 (A:) Bacterio 2.0 2.9E+02 0.021 15.6 0.6 24 33-56 23-46 (70)
9 d1sgma1 a.4.1.9 (A:5-77) Putat 1.8 6.2E+02 0.045 13.4 2.0 18 118-135 24-41 (73)
10 d1umka2 c.25.1.1 (A:154-300) c 1.7 3.2E+02 0.023 16.9 0.5 22 113-134 122-145 (147)
No 1
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.16 E-value=85 Score=24.69 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=20.6
Q ss_pred eehhHHHHHHHHHHhhhhhcccCCCCc
Q 043952 36 SRLVSTIHATLAVTLTSPPFKTGDAQF 62 (181)
Q Consensus 36 ~r~vS~~Ha~i~~~~~~~~~~~~~~~~ 62 (181)
.|++|.+||.|++-++..-+....+.|
T Consensus 171 yrlISGlHsSIs~Hl~~~yl~~~~~~w 197 (374)
T d1rp4a_ 171 YRLVSGFHASIGTHLSKEYLNTKTGKW 197 (374)
T ss_dssp HHHHHHHHHHHHHHHHHSEEETTTTEE
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcCcc
Confidence 489999999999988866655344456
No 2
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.37 E-value=2.4e+02 Score=15.09 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=12.2
Q ss_pred HHHHHHHcCCCCChH
Q 043952 119 CREMLKELGYRDTGL 133 (181)
Q Consensus 119 ~R~~l~~~g~~~s~~ 133 (181)
++..|++.|.++.|+
T Consensus 11 l~~lL~~y~I~HGPv 25 (46)
T d2odgc1 11 LTTLLRRYNIPHGPV 25 (46)
T ss_dssp HHHHHHHTTCCCCCC
T ss_pred HHHHHHHhCCCCCCc
Confidence 578899999988664
No 3
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=3.96 E-value=2.8e+02 Score=13.53 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 043952 2 DDYILKLVVIVVVLWTAVFLFIR 24 (181)
Q Consensus 2 ~~~~~~~~~~s~~~w~~~~~~~~ 24 (181)
|+-++-+..-..+.|+.+-+..|
T Consensus 11 diaqlvwyaqwlviwtvvllylr 33 (36)
T d2i5nh2 11 DIAQLVWYAQWLVIWTVVLLYLR 33 (36)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc
Confidence 55566666667778887766554
No 4
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=3.75 E-value=2e+02 Score=16.34 Aligned_cols=28 Identities=7% Similarity=-0.035 Sum_probs=21.3
Q ss_pred ccHhHhHHHHHHHcCCCCChHHHHHHHH
Q 043952 113 SSPFLHCREMLKELGYRDTGLNLTADVT 140 (181)
Q Consensus 113 Stpfln~R~~l~~~g~~~s~~y~~n~~l 140 (181)
+.+.++.+.+-++.|+.++..|.....+
T Consensus 17 ~~~~~s~~eia~~~~~~~st~~rll~tL 44 (75)
T d1mkma1 17 NPGDVSVSEIAEKFNMSVSNAYKYMVVL 44 (75)
T ss_dssp CSSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3456788888999999888888765544
No 5
>d1zela1 a.4.5.83 (A:1-82) Hypothetical protein Rv2827c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.08 E-value=1.6e+02 Score=17.03 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=8.8
Q ss_pred CccceeeehhHHH
Q 043952 30 RSFNFCSRLVSTI 42 (181)
Q Consensus 30 ~~~~w~~r~vS~~ 42 (181)
+-+.|.+|+||.+
T Consensus 10 riptwasrvvsgl 22 (82)
T d1zela1 10 RIPTWASRVVSGL 22 (82)
T ss_dssp CCCGGGHHHHHHH
T ss_pred ccchHHHHHHhhh
Confidence 3457888887754
No 6
>d1pgya_ a.5.2.1 (A:) Auxilin-like protein Swa2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.67 E-value=2.1e+02 Score=15.23 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=8.5
Q ss_pred hhHhhhhhhhh
Q 043952 167 IIIKAMALGLQ 177 (181)
Q Consensus 167 ~~~k~~~~gl~ 177 (181)
=+.|+|++||-
T Consensus 10 EiAkLMSLGL~ 20 (47)
T d1pgya_ 10 EIARLMSLGLS 20 (47)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHcccC
Confidence 37788888874
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.48 E-value=3.3e+02 Score=15.94 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 043952 67 EITWTLAYLIYDLVC 81 (181)
Q Consensus 67 ~~~~s~GYF~~Dl~~ 81 (181)
+--+.++|.+||-..
T Consensus 49 ~PPfi~~Y~iy~W~~ 63 (75)
T d1ppjg_ 49 APPFVAFYLVYTWGT 63 (75)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 334779999998765
No 8
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=2.03 E-value=2.9e+02 Score=15.59 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=19.2
Q ss_pred ceeeehhHHHHHHHHHHhhhhhcc
Q 043952 33 NFCSRLVSTIHATLAVTLTSPPFK 56 (181)
Q Consensus 33 ~w~~r~vS~~Ha~i~~~~~~~~~~ 56 (181)
.|...+||.+-|+-++.+++..--
T Consensus 23 g~vttivsil~avgsgglsllaaa 46 (70)
T d1o82a_ 23 GWVTTIVSILTAVGSGGLSLLAAA 46 (70)
T ss_dssp CCHHHHHHHHHHHCHHHHHHHHHT
T ss_pred cchhhHHHHHHHHccccHHHHHHh
Confidence 588889999999888888876544
No 9
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=1.75 E-value=6.2e+02 Score=13.39 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=12.0
Q ss_pred hHHHHHHHcCCCCChHHH
Q 043952 118 HCREMLKELGYRDTGLNL 135 (181)
Q Consensus 118 n~R~~l~~~g~~~s~~y~ 135 (181)
.+|.+-+..|.+.+.+|.
T Consensus 24 si~~Ia~~agvs~~~iy~ 41 (73)
T d1sgma1 24 GLNQIVKESGAPKGSLYH 41 (73)
T ss_dssp CHHHHHHHHCCCSCHHHH
T ss_pred CHHHHHHHhCCCHHHHHH
Confidence 356777777877766653
No 10
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.71 E-value=3.2e+02 Score=16.90 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=15.5
Q ss_pred ccHhHh--HHHHHHHcCCCCChHH
Q 043952 113 SSPFLH--CREMLKELGYRDTGLN 134 (181)
Q Consensus 113 Stpfln--~R~~l~~~g~~~s~~y 134 (181)
+.++++ .+..|++.|.++.++|
T Consensus 122 P~~m~~~~~~~~L~~~G~~~e~i~ 145 (147)
T d1umka2 122 PPPMIQYACLPNLDHVGHPTERCF 145 (147)
T ss_dssp CHHHHHHTTHHHHHHHTCCGGGEE
T ss_pred CHHHHHHHHHHHHHHcCCCHHHEE
Confidence 455665 3788999998876653
Done!