BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043953
(868 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6B|A Chain A, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 2.4 Angstroms
pdb|3T6B|B Chain B, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 2.4 Angstroms
pdb|3T6J|A Chain A, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 3.0 Angstroms
Length = 726
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 466 RTRKYKQRTIQRRNPDTELRILTCIHSVGNLSGIINLLE-LSNATKKSPLCVFAVHLVEL 524
R + K R++ + + LR L + S G+++G L E + T P C + L
Sbjct: 604 RLDRSKIRSVGKPALERFLRRLQVLKSTGDVAGGRALYEGYATVTDAPPECFLTLRDTVL 663
Query: 525 TRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAF 561
R+ S LIV R + SD + A + +I +F
Sbjct: 664 LRKESRKLIVQPNTRLEGSDVQLLEYEASAAGLIRSF 700
>pdb|3FVY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iii
Length = 728
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 466 RTRKYKQRTIQRRNPDTELRILTCIHSVGNLSGIINLLE-LSNATKKSPLCVFAVHLVEL 524
R + K R++ + + LR L + S G+++G L E + T P C + L
Sbjct: 606 RLDRSKIRSVGKPALERFLRRLQVLKSTGDVAGGRALYEGYATVTDAPPECFLTLRDTVL 665
Query: 525 TRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAF 561
R+ S LIV R + SD + A + +I +F
Sbjct: 666 LRKESRKLIVQPNTRLEGSDVQLLEYEASAAGLIRSF 702
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 379 LLTTIVATSAKILSTVLVALCYGMPVRDGVALG 411
+L T++ K+LS +L AL YG P G+ALG
Sbjct: 513 ILATLLKEDVKMLSHLLQALDYGAPPHGGIALG 545
>pdb|1DWA|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 1:
Structure Prior To Irradiation
pdb|1DWF|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 2:
Structure After Irradiation With 9.110e15 PhotonsMM2
pdb|1DWG|M Chain M, Study On Radiation Damage On A Cryocooled Crystal: Part 3
Structure After Irradiation With 18.210e15 PhotonsMM2.
pdb|1DWH|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 4:
Structure After Irradiation With 27.210e15 PhotonsMM2
pdb|1DWI|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 5:
Structure After Irradiation With 54.010e15 PhotonsMM2
pdb|1DWJ|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Refined
Part 6: Structure After A Radiation Dose Of 5410e15
PhotonsMM2
Length = 499
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 79 ELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYM 130
E +GP T GT+ + DT+ +++ P E+ ++ ++ LGL +Y
Sbjct: 278 EFFLGWFMGPLTNGTYPQIMIDTVGERLPSFSPEESNLVKGSYDFLGLNYYF 329
>pdb|1E6Q|M Chain M, Myrosinase From Sinapis Alba With The Bound Transition
State Analogue Gluco-Tetrazole
pdb|1E6X|M Chain M, Myrosinase From Sinapis Alba With A Bound Transition State
Analogue,D-Glucono-1,5-Lactone
pdb|1E70|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba
pdb|1E71|M Chain M, Myrosinase From Sinapis Alba With Bound Ascorbate
pdb|1E72|M Chain M, Myrosinase From Sinapis Alba With Bound
Gluco-Hydroximolactam And Sulfate Or Ascorbate
pdb|1E73|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba With Bound
L-Ascorbate
pdb|1E6S|M Chain M, Myrosinase From Sinapis Alba With Bound
Gluco-Hydroximolactam And Sulfate
pdb|1E4M|M Chain M, Myrosinase From Sinapis Alba
pdb|1W9B|M Chain M, S. Alba Myrosinase In Complex With Carba-Glucotropaeolin
pdb|1W9D|M Chain M, S. Alba Myrosinase In Complex With S-Ethyl
Phenylacetothiohydroximate-O-Sulfate
pdb|2WXD|M Chain M, A Micromolar O-Sulfated Thiohydroximate Inhibitor Bound To
Plant Myrosinase
Length = 501
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 79 ELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYM 130
E +GP T GT+ + DT+ +++ P E+ ++ ++ LGL +Y
Sbjct: 280 EFFLGWFMGPLTNGTYPQIMIDTVGERLPSFSPEESNLVKGSYDFLGLNYYF 331
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 2 SKPRNVTFGNYTISRPG----GLEIQVCYPEEFNKYDSPWQRQN 41
+K N+TFGNYT G G + YP + S W N
Sbjct: 126 NKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYN 169
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 2 SKPRNVTFGNYTISRPG----GLEIQVCYPEEFNKYDSPWQRQNP 42
+K N+TFGNYT G G + YP + S W N
Sbjct: 126 NKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQ 170
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 2 SKPRNVTFGNYTISRPG----GLEIQVCYPEEFNKYDSPWQRQNP 42
+K N+TFGNYT G G + YP + S W N
Sbjct: 126 NKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQ 170
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 2 SKPRNVTFGNYTISRPG----GLEIQVCYPEEFNKYDSPWQRQN 41
+K N+TFGNYT G G + YP + S W N
Sbjct: 109 NKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYN 152
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 2 SKPRNVTFGNYTISRPG----GLEIQVCYPEEFNKYDSPWQRQN 41
+K N+TFGNYT G G + YP + S W N
Sbjct: 109 NKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYN 152
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 2 SKPRNVTFGNYTISRPG----GLEIQVCYPEEFNKYDSPWQRQN 41
+K N+TFGNYT G G + YP + S W N
Sbjct: 109 NKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYN 152
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 2 SKPRNVTFGNYTISRPG----GLEIQVCYPEEFNKYDSPWQRQN 41
+K N+TFGNYT G G + YP + S W N
Sbjct: 109 NKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYN 152
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 2 SKPRNVTFGNYTISRPG----GLEIQVCYPEEFNKYDSPWQRQN 41
+K N+TFGNYT G G + YP + S W N
Sbjct: 109 NKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYN 152
>pdb|3QFG|A Chain A, Structure Of A Putative Lipoprotein From Staphylococcus
Aureus Subsp. Aureus Nctc 8325
pdb|3QFG|B Chain B, Structure Of A Putative Lipoprotein From Staphylococcus
Aureus Subsp. Aureus Nctc 8325
Length = 242
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 533 IVHDAFRTKTSDQNSIRELADSDLIIN-AFRHYQDRNDDITVQPLTAVSSFT-------S 584
I HD D+N++ +L D L+ + ++ + + N D + TA + F +
Sbjct: 109 ISHDYINITQDDKNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAXFIYELRGDGN 168
Query: 585 IHEDIFEIAEDKVVALILIPFHKQPTAD 612
I+ ++ + +EDK V F K T D
Sbjct: 169 INLNVHKYSEDKTVDSKSFKFSKLKTED 196
>pdb|1MYR|A Chain A, Myrosinase From Sinapis Alba
Length = 501
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 79 ELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYM 130
+ +GP T GT+ + DT+ ++ P E ++ ++ LGL +Y
Sbjct: 280 QFFLGWFMGPLTNGTYPQIMIDTVGARLPTFSPEETNLVKGSYDFLGLNYYF 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,825,690
Number of Sequences: 62578
Number of extensions: 949405
Number of successful extensions: 1874
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1862
Number of HSP's gapped (non-prelim): 25
length of query: 868
length of database: 14,973,337
effective HSP length: 107
effective length of query: 761
effective length of database: 8,277,491
effective search space: 6299170651
effective search space used: 6299170651
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)