Query 043953
Match_columns 868
No_of_seqs 338 out of 2148
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 1E-151 2E-156 1375.2 85.1 784 23-834 17-802 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 1E-122 3E-127 1104.1 55.9 757 29-830 3-768 (769)
3 PRK03562 glutathione-regulated 100.0 8.9E-48 1.9E-52 456.4 49.5 417 48-505 4-421 (621)
4 PRK10669 putative cation:proto 100.0 7.2E-47 1.6E-51 447.2 49.2 422 50-503 7-436 (558)
5 PRK03659 glutathione-regulated 100.0 1E-46 2.2E-51 446.8 48.9 415 49-505 5-421 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 2.8E-44 6.1E-49 405.0 45.3 379 48-463 5-386 (397)
7 PRK05326 potassium/proton anti 100.0 1.4E-39 3E-44 384.9 37.4 383 46-463 3-389 (562)
8 COG4651 RosB Kef-type K+ trans 100.0 3.6E-35 7.7E-40 299.4 34.1 391 43-466 1-392 (408)
9 TIGR00932 2a37 transporter, mo 100.0 4.2E-35 9.1E-40 316.8 33.4 271 59-365 2-273 (273)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 3.2E-39 6.9E-44 365.8 -4.5 373 56-461 3-378 (380)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 3.6E-28 7.9E-33 284.3 41.1 373 36-433 2-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 8.9E-28 1.9E-32 280.7 39.2 369 55-461 4-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 100.0 3E-25 6.5E-30 252.5 40.7 382 49-461 6-406 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.9 9.2E-24 2E-28 246.8 36.7 379 58-462 18-417 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.9 1.5E-24 3.3E-29 232.0 26.8 354 46-437 4-360 (574)
16 KOG1965 Sodium/hydrogen exchan 99.8 3.8E-17 8.1E-22 184.0 24.3 392 51-463 37-456 (575)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 2.4E-16 5.2E-21 164.0 26.1 351 54-429 19-382 (467)
18 PRK14853 nhaA pH-dependent sod 99.7 2.3E-14 5E-19 159.4 34.2 293 118-455 63-388 (423)
19 PRK11175 universal stress prot 99.7 1.2E-15 2.5E-20 167.8 21.2 285 485-826 5-300 (305)
20 TIGR00773 NhaA Na+/H+ antiport 99.4 3.9E-11 8.6E-16 131.3 27.7 269 118-430 53-344 (373)
21 KOG1966 Sodium/hydrogen exchan 99.4 2.8E-13 6.2E-18 151.9 3.7 373 59-462 52-449 (670)
22 cd01988 Na_H_Antiporter_C The 99.2 8.9E-11 1.9E-15 111.9 12.9 131 485-640 1-131 (132)
23 PRK14856 nhaA pH-dependent sod 99.1 1.3E-08 2.8E-13 113.4 25.2 292 117-455 68-424 (438)
24 PRK09560 nhaA pH-dependent sod 99.0 7.3E-08 1.6E-12 105.9 26.3 269 118-430 60-353 (389)
25 PRK09561 nhaA pH-dependent sod 99.0 1.3E-07 2.8E-12 103.8 25.9 269 118-430 60-351 (388)
26 PRK14855 nhaA pH-dependent sod 99.0 1E-07 2.2E-12 105.8 24.6 282 118-448 64-401 (423)
27 PRK14854 nhaA pH-dependent sod 99.0 3.5E-07 7.5E-12 100.2 27.2 269 119-431 58-349 (383)
28 COG3004 NhaA Na+/H+ antiporter 98.8 1.8E-06 3.9E-11 91.0 23.2 258 127-431 72-355 (390)
29 PF06965 Na_H_antiport_1: Na+/ 98.7 7.6E-08 1.6E-12 105.6 13.0 286 117-446 55-367 (378)
30 cd01989 STK_N The N-terminal d 98.7 2.7E-07 5.9E-12 89.8 14.1 140 485-640 1-143 (146)
31 PRK15456 universal stress prot 98.7 2E-07 4.4E-12 90.4 12.6 134 485-640 4-141 (142)
32 PRK15005 universal stress prot 98.6 2.5E-07 5.4E-12 89.7 12.1 136 485-640 4-143 (144)
33 cd01987 USP_OKCHK USP domain i 98.6 1.8E-07 4E-12 88.3 10.6 122 485-640 1-123 (124)
34 cd01989 STK_N The N-terminal d 98.6 5.6E-07 1.2E-11 87.5 12.6 141 664-826 1-145 (146)
35 PF00582 Usp: Universal stress 98.6 2.4E-07 5.3E-12 87.9 9.1 137 484-640 3-139 (140)
36 PRK09982 universal stress prot 98.5 3.5E-07 7.6E-12 88.9 9.2 133 485-640 5-137 (142)
37 PRK15005 universal stress prot 98.5 2E-06 4.4E-11 83.3 13.8 140 662-825 2-144 (144)
38 cd01988 Na_H_Antiporter_C The 98.5 2.4E-06 5.2E-11 81.2 13.9 130 664-825 1-132 (132)
39 PRK15118 universal stress glob 98.4 1.8E-06 3.8E-11 83.9 11.7 133 485-640 5-137 (144)
40 PF00582 Usp: Universal stress 98.4 1.8E-06 3.9E-11 81.9 10.6 134 662-825 2-140 (140)
41 cd00293 USP_Like Usp: Universa 98.4 3.4E-06 7.5E-11 79.0 11.8 129 485-639 1-129 (130)
42 PRK09982 universal stress prot 98.3 2.1E-06 4.6E-11 83.4 8.6 135 662-825 3-138 (142)
43 PRK10116 universal stress prot 98.3 4.9E-06 1.1E-10 80.5 10.9 135 484-641 4-138 (142)
44 PRK11175 universal stress prot 98.3 4.6E-06 1E-10 91.7 11.7 143 484-645 153-303 (305)
45 PRK15456 universal stress prot 98.2 1.4E-05 3.1E-10 77.4 13.0 138 662-825 2-142 (142)
46 PRK15118 universal stress glob 98.2 4.1E-06 8.9E-11 81.3 8.2 136 662-826 3-139 (144)
47 cd01987 USP_OKCHK USP domain i 98.2 1.2E-05 2.6E-10 75.8 11.0 120 664-824 1-123 (124)
48 PRK10116 universal stress prot 98.1 9.3E-06 2E-10 78.5 8.8 135 662-825 3-138 (142)
49 PF05684 DUF819: Protein of un 98.0 0.017 3.8E-07 65.2 33.2 317 72-446 24-362 (378)
50 cd00293 USP_Like Usp: Universa 97.9 0.00013 2.8E-09 68.2 12.8 129 664-824 1-130 (130)
51 PRK12460 2-keto-3-deoxyglucona 97.9 0.0032 7E-08 67.9 22.8 252 126-463 51-306 (312)
52 COG0786 GltS Na+/glutamate sym 97.7 0.0067 1.5E-07 66.9 22.2 159 268-427 168-360 (404)
53 COG0589 UspA Universal stress 97.7 0.00056 1.2E-08 66.3 12.4 142 484-640 6-150 (154)
54 PF03616 Glt_symporter: Sodium 97.6 0.036 7.7E-07 62.6 27.3 94 318-413 247-343 (368)
55 TIGR00698 conserved hypothetic 97.5 0.12 2.6E-06 57.3 29.8 89 68-172 26-115 (335)
56 PF03812 KdgT: 2-keto-3-deoxyg 97.4 0.041 8.8E-07 59.3 23.4 91 124-215 49-140 (314)
57 PRK12652 putative monovalent c 97.4 0.0013 2.8E-08 73.4 12.2 125 662-816 5-145 (357)
58 TIGR00210 gltS sodium--glutama 97.2 0.16 3.4E-06 57.9 26.1 92 317-411 244-339 (398)
59 COG0798 ACR3 Arsenite efflux p 97.1 0.2 4.3E-06 54.6 24.8 243 118-426 49-296 (342)
60 COG0385 Predicted Na+-dependen 96.9 0.47 1E-05 51.9 25.7 149 117-287 35-191 (319)
61 PF13593 DUF4137: SBF-like CPA 96.9 0.61 1.3E-05 51.6 26.4 113 119-241 30-147 (313)
62 PF03601 Cons_hypoth698: Conse 96.9 0.26 5.7E-06 54.1 23.2 101 70-194 23-124 (305)
63 PF03390 2HCT: 2-hydroxycarbox 96.8 0.39 8.5E-06 54.2 24.1 267 135-436 109-395 (414)
64 COG0589 UspA Universal stress 96.6 0.026 5.6E-07 54.4 12.3 145 662-827 5-153 (154)
65 COG3493 CitS Na+/citrate sympo 96.6 1 2.2E-05 49.7 24.5 86 349-436 326-414 (438)
66 PRK12652 putative monovalent c 96.6 0.024 5.2E-07 63.4 12.7 132 484-638 6-147 (357)
67 PRK03562 glutathione-regulated 96.4 0.096 2.1E-06 63.5 17.6 118 298-418 9-127 (621)
68 TIGR00841 bass bile acid trans 96.3 2.2 4.7E-05 46.6 27.9 105 122-239 10-119 (286)
69 TIGR00793 kdgT 2-keto-3-deoxyg 96.2 0.25 5.3E-06 53.1 17.2 89 126-215 51-140 (314)
70 TIGR00932 2a37 transporter, mo 96.1 0.16 3.6E-06 54.9 16.2 127 305-436 3-131 (273)
71 PRK03659 glutathione-regulated 96.0 0.22 4.8E-06 60.2 17.8 113 299-415 10-124 (601)
72 PRK10669 putative cation:proto 95.9 0.23 5E-06 59.6 17.5 131 301-436 13-144 (558)
73 TIGR00832 acr3 arsenical-resis 95.7 2.5 5.5E-05 47.0 23.2 104 123-237 46-153 (328)
74 PF03601 Cons_hypoth698: Conse 95.6 0.4 8.7E-06 52.6 16.4 128 301-430 5-138 (305)
75 TIGR00783 ccs citrate carrier 95.5 1.2 2.7E-05 49.3 19.3 269 135-436 40-328 (347)
76 PRK05326 potassium/proton anti 95.3 0.35 7.5E-06 58.1 16.0 118 300-420 12-133 (562)
77 PF06826 Asp-Al_Ex: Predicted 95.3 0.75 1.6E-05 46.0 15.4 114 69-206 19-136 (169)
78 COG0475 KefB Kef-type K+ trans 95.2 0.67 1.5E-05 53.0 17.3 139 298-441 10-152 (397)
79 PF03956 DUF340: Membrane prot 95.2 0.19 4.1E-06 51.2 11.2 105 119-237 23-135 (191)
80 COG2855 Predicted membrane pro 95.0 0.3 6.6E-06 53.4 12.7 115 311-428 30-145 (334)
81 COG2855 Predicted membrane pro 94.8 7.9 0.00017 42.6 24.2 103 69-196 33-135 (334)
82 TIGR00844 c_cpa1 na(+)/h(+) an 94.8 0.65 1.4E-05 56.7 16.0 71 348-420 74-146 (810)
83 PF01758 SBF: Sodium Bile acid 94.8 1.7 3.8E-05 44.1 17.3 108 124-242 2-113 (187)
84 PLN03159 cation/H(+) antiporte 94.6 0.77 1.7E-05 57.5 16.7 40 662-701 458-499 (832)
85 PRK03818 putative transporter; 94.4 0.57 1.2E-05 55.9 14.5 123 55-205 12-141 (552)
86 PRK05274 2-keto-3-deoxyglucona 94.4 2.4 5.2E-05 47.0 18.2 47 127-173 54-100 (326)
87 PRK10490 sensor protein KdpD; 94.3 0.46 1E-05 60.2 14.2 125 481-641 248-373 (895)
88 TIGR00698 conserved hypothetic 94.1 1.4 3.1E-05 48.9 15.8 111 316-429 29-143 (335)
89 COG3180 AbrB Putative ammonia 94.1 12 0.00026 41.7 30.1 119 305-430 196-318 (352)
90 TIGR01625 YidE_YbjL_dupl AspT/ 93.0 0.69 1.5E-05 45.5 9.8 114 73-208 21-139 (154)
91 TIGR00831 a_cpa1 Na+/H+ antipo 93.0 1.1 2.4E-05 53.2 13.5 117 301-422 5-124 (525)
92 TIGR03802 Asp_Ala_antiprt aspa 92.8 0.88 1.9E-05 54.5 12.2 81 69-173 31-114 (562)
93 PRK04972 putative transporter; 92.5 1 2.2E-05 53.9 12.2 117 56-205 19-140 (558)
94 TIGR03802 Asp_Ala_antiprt aspa 91.8 1.6 3.4E-05 52.4 12.7 115 70-206 412-530 (562)
95 PF05145 AmoA: Putative ammoni 91.8 25 0.00053 39.1 28.5 126 300-432 158-287 (318)
96 COG2205 KdpD Osmosensitive K+ 91.5 1.5 3.2E-05 53.2 11.7 126 481-640 246-372 (890)
97 TIGR03082 Gneg_AbrB_dup membra 91.0 14 0.0003 36.5 16.4 96 57-174 3-100 (156)
98 TIGR03136 malonate_biotin Na+- 90.7 3.5 7.6E-05 45.5 12.7 117 346-467 101-217 (399)
99 TIGR00210 gltS sodium--glutama 90.0 13 0.00028 42.5 17.2 167 52-236 222-393 (398)
100 PF03977 OAD_beta: Na+-transpo 89.6 2.5 5.3E-05 46.1 10.3 114 348-467 67-180 (360)
101 TIGR00946 2a69 he Auxin Efflux 89.5 10 0.00022 42.0 15.8 135 71-235 180-315 (321)
102 TIGR03082 Gneg_AbrB_dup membra 88.8 13 0.00028 36.6 14.3 118 303-427 4-125 (156)
103 COG1346 LrgB Putative effector 88.6 31 0.00066 36.0 16.9 111 337-460 61-171 (230)
104 PRK04288 antiholin-like protei 87.3 42 0.00091 35.3 17.5 111 337-460 64-174 (232)
105 PRK10490 sensor protein KdpD; 87.3 6.6 0.00014 50.0 13.9 122 662-825 250-373 (895)
106 PRK12460 2-keto-3-deoxyglucona 86.7 7.3 0.00016 42.6 11.8 48 125-172 197-244 (312)
107 TIGR00808 malonate_madM malona 86.6 8.9 0.00019 38.9 11.3 106 55-175 22-134 (254)
108 PRK04972 putative transporter; 86.6 6.9 0.00015 46.9 12.8 114 71-206 408-525 (558)
109 COG2985 Predicted permease [Ge 85.8 6.4 0.00014 45.1 11.1 78 123-209 62-146 (544)
110 KOG2310 DNA repair exonuclease 85.1 1.4 3E-05 50.7 5.5 82 585-676 40-132 (646)
111 COG0025 NhaP NhaP-type Na+/H+ 83.6 26 0.00057 40.5 15.4 121 301-424 13-138 (429)
112 PF05145 AmoA: Putative ammoni 83.4 20 0.00043 39.8 13.8 100 52-173 155-256 (318)
113 PRK03818 putative transporter; 83.2 28 0.00061 41.7 15.8 106 76-203 403-513 (552)
114 COG3329 Predicted permease [Ge 81.4 33 0.00072 37.1 13.5 126 311-442 7-138 (372)
115 PF00999 Na_H_Exchanger: Sodiu 79.8 0.57 1.2E-05 53.1 0.0 113 303-418 5-123 (380)
116 COG4651 RosB Kef-type K+ trans 79.6 8.8 0.00019 41.4 8.6 116 299-420 11-130 (408)
117 TIGR01109 Na_pump_decarbB sodi 77.3 12 0.00026 40.9 8.9 116 346-467 59-180 (354)
118 COG5505 Predicted integral mem 77.3 1.2E+02 0.0025 33.2 28.0 84 349-436 275-358 (384)
119 PF03547 Mem_trans: Membrane t 76.6 14 0.0003 41.9 10.1 104 321-427 9-116 (385)
120 TIGR02432 lysidine_TilS_N tRNA 75.9 16 0.00036 36.8 9.4 36 664-699 1-36 (189)
121 PF03616 Glt_symporter: Sodium 75.4 39 0.00084 38.3 13.0 107 54-175 226-335 (368)
122 PRK09903 putative transporter 74.8 51 0.0011 36.4 13.7 90 115-214 197-287 (314)
123 COG3263 NhaP-type Na+/H+ and K 74.7 34 0.00073 39.1 11.7 78 344-422 59-136 (574)
124 COG2431 Predicted membrane pro 74.0 43 0.00093 35.9 11.7 56 118-173 130-189 (297)
125 cd01984 AANH_like Adenine nucl 73.7 3.5 7.6E-05 35.8 3.3 50 584-638 35-84 (86)
126 PF03956 DUF340: Membrane prot 73.2 6.2 0.00014 40.3 5.4 103 322-426 2-106 (191)
127 PRK15475 oxaloacetate decarbox 72.8 8.8 0.00019 42.5 6.6 117 346-467 130-251 (433)
128 PRK15477 oxaloacetate decarbox 72.5 9 0.00019 42.4 6.6 116 347-467 131-251 (433)
129 PRK15476 oxaloacetate decarbox 72.5 9 0.00019 42.4 6.6 117 346-467 130-251 (433)
130 PF01171 ATP_bind_3: PP-loop f 71.5 14 0.0003 37.3 7.5 38 664-701 1-38 (182)
131 PRK10711 hypothetical protein; 70.2 1.5E+02 0.0032 31.3 15.9 109 339-460 61-169 (231)
132 COG2205 KdpD Osmosensitive K+ 69.8 27 0.00059 42.8 10.4 122 662-824 248-372 (890)
133 PRK09903 putative transporter 69.3 1.2E+02 0.0026 33.5 15.0 133 320-461 174-310 (314)
134 COG0786 GltS Na+/glutamate sym 68.7 30 0.00065 38.9 9.7 108 53-175 226-336 (404)
135 TIGR00946 2a69 he Auxin Efflux 68.5 1.9E+02 0.0042 31.9 28.8 135 318-460 181-319 (321)
136 PRK12342 hypothetical protein; 67.2 19 0.00041 38.6 7.7 31 668-699 30-60 (254)
137 COG1346 LrgB Putative effector 66.6 1.7E+02 0.0037 30.6 20.2 107 115-233 61-168 (230)
138 PF04172 LrgB: LrgB-like famil 65.9 1.7E+02 0.0038 30.4 15.5 108 339-459 50-157 (215)
139 PRK03359 putative electron tra 65.5 15 0.00033 39.3 6.6 110 669-809 32-149 (256)
140 PF01012 ETF: Electron transfe 64.6 24 0.00053 34.7 7.6 27 673-699 15-41 (164)
141 COG2985 Predicted permease [Ge 63.7 28 0.00061 40.1 8.4 109 73-203 395-507 (544)
142 COG0679 Predicted permeases [G 63.3 2.4E+02 0.0052 31.1 29.3 137 317-460 166-306 (311)
143 TIGR01625 YidE_YbjL_dupl AspT/ 62.3 27 0.00058 34.4 7.1 91 321-413 24-121 (154)
144 COG1883 OadB Na+-transporting 62.0 4.1 9E-05 43.3 1.5 110 348-468 82-196 (375)
145 cd01992 PP-ATPase N-terminal d 61.3 44 0.00095 33.4 8.9 37 664-700 1-37 (185)
146 COG2035 Predicted membrane pro 60.9 2.4E+02 0.0053 30.4 14.5 41 45-87 57-97 (276)
147 TIGR00659 conserved hypothetic 59.9 2.3E+02 0.005 29.8 17.2 108 340-460 61-168 (226)
148 PRK04288 antiholin-like protei 58.4 2.5E+02 0.0054 29.7 16.5 102 115-232 64-166 (232)
149 TIGR00783 ccs citrate carrier 58.1 1.2E+02 0.0027 33.9 12.1 89 72-174 203-293 (347)
150 cd01993 Alpha_ANH_like_II This 57.6 81 0.0017 31.3 10.1 37 664-700 1-39 (185)
151 cd01984 AANH_like Adenine nucl 56.8 12 0.00026 32.3 3.4 33 665-698 1-33 (86)
152 TIGR00840 b_cpa1 sodium/hydrog 56.7 1E+02 0.0022 37.1 12.1 73 349-423 69-150 (559)
153 PF05982 DUF897: Domain of unk 53.9 86 0.0019 34.6 9.8 49 126-175 213-264 (327)
154 COG0679 Predicted permeases [G 53.1 2.6E+02 0.0056 30.8 13.9 100 320-422 11-113 (311)
155 PF02040 ArsB: Arsenical pump 52.8 4.2E+02 0.0092 30.7 21.9 36 197-232 117-152 (423)
156 PF03547 Mem_trans: Membrane t 52.7 1.5E+02 0.0033 33.4 12.5 86 319-405 244-335 (385)
157 KOG1650 Predicted K+/H+-antipo 52.4 1.7E+02 0.0037 36.6 13.5 87 123-217 313-401 (769)
158 PRK05253 sulfate adenylyltrans 51.9 60 0.0013 35.7 8.5 40 662-701 27-66 (301)
159 COG3969 Predicted phosphoadeno 50.8 37 0.00081 37.4 6.4 38 662-699 27-65 (407)
160 TIGR03136 malonate_biotin Na+- 49.7 4.3E+02 0.0093 29.8 22.2 71 299-372 233-303 (399)
161 PF13593 DUF4137: SBF-like CPA 49.6 1.7E+02 0.0037 32.3 11.7 90 321-413 7-98 (313)
162 PRK04125 murein hydrolase regu 49.1 2.6E+02 0.0056 27.1 11.7 104 48-168 7-113 (141)
163 PRK10660 tilS tRNA(Ile)-lysidi 48.9 1E+02 0.0022 35.8 10.3 39 662-700 15-54 (436)
164 PF06826 Asp-Al_Ex: Predicted 48.4 2E+02 0.0043 28.8 10.8 89 317-406 22-115 (169)
165 PF05684 DUF819: Protein of un 47.5 2.6E+02 0.0057 31.8 13.0 97 344-445 52-152 (378)
166 COG3180 AbrB Putative ammonia 47.1 2.9E+02 0.0062 31.1 12.7 122 298-426 10-135 (352)
167 TIGR00930 2a30 K-Cl cotranspor 45.7 7.9E+02 0.017 31.8 44.9 128 483-640 575-707 (953)
168 COG2086 FixA Electron transfer 45.2 77 0.0017 34.1 7.7 107 672-811 36-150 (260)
169 TIGR02039 CysD sulfate adenyly 45.0 77 0.0017 34.7 7.9 39 663-701 20-58 (294)
170 TIGR00793 kdgT 2-keto-3-deoxyg 44.4 1.3E+02 0.0029 32.8 9.4 74 78-172 176-249 (314)
171 PF09605 Trep_Strep: Hypotheti 42.2 3.8E+02 0.0083 27.1 15.4 127 270-401 38-181 (186)
172 COG1646 Predicted phosphate-bi 41.0 88 0.0019 32.8 7.1 64 572-643 15-79 (240)
173 PF03812 KdgT: 2-keto-3-deoxyg 40.9 1.2E+02 0.0025 33.4 8.3 74 78-172 176-249 (314)
174 COG3329 Predicted permease [Ge 40.8 5.3E+02 0.011 28.3 16.6 24 150-173 71-94 (372)
175 PF06181 DUF989: Protein of un 40.2 5.3E+02 0.011 28.1 13.1 40 349-389 229-268 (300)
176 TIGR02185 Trep_Strep conserved 40.2 4.2E+02 0.009 27.0 13.9 26 376-401 159-184 (189)
177 PF02601 Exonuc_VII_L: Exonucl 39.1 56 0.0012 36.1 6.0 52 734-786 28-87 (319)
178 TIGR01109 Na_pump_decarbB sodi 38.8 5.9E+02 0.013 28.3 18.6 72 299-372 195-266 (354)
179 KOG0573 Asparagine synthase [A 38.8 2.5E+02 0.0054 32.4 10.6 99 621-756 224-325 (520)
180 PF03652 UPF0081: Uncharacteri 37.6 1.3E+02 0.0028 28.9 7.3 61 583-646 37-98 (135)
181 PRK04125 murein hydrolase regu 37.1 3.5E+02 0.0076 26.3 10.1 41 353-394 69-111 (141)
182 PF04172 LrgB: LrgB-like famil 36.7 5.1E+02 0.011 27.0 18.5 87 132-231 63-149 (215)
183 PRK12563 sulfate adenylyltrans 36.5 83 0.0018 34.7 6.5 40 662-701 37-76 (312)
184 COG3296 Uncharacterized protei 36.5 3.8E+02 0.0083 25.5 11.5 16 272-287 35-50 (143)
185 cd01118 ArsB_permease Anion pe 34.5 7.4E+02 0.016 28.2 21.3 24 63-86 10-33 (416)
186 PRK01663 C4-dicarboxylate tran 33.6 8.1E+02 0.018 28.4 15.9 37 138-174 66-102 (428)
187 COG3371 Predicted membrane pro 33.3 2.7E+02 0.0059 28.1 8.9 89 40-152 46-135 (181)
188 PF03977 OAD_beta: Na+-transpo 33.0 7.3E+02 0.016 27.7 23.7 72 299-372 195-266 (360)
189 COG3748 Predicted membrane pro 31.6 4E+02 0.0086 29.4 10.3 40 349-389 226-265 (407)
190 COG1570 XseA Exonuclease VII, 31.3 69 0.0015 36.9 5.0 52 734-786 149-205 (440)
191 PF13194 DUF4010: Domain of un 30.9 6.2E+02 0.014 26.2 15.3 27 304-330 137-164 (211)
192 TIGR00832 acr3 arsenical-resis 30.9 7.8E+02 0.017 27.4 15.1 67 359-427 55-126 (328)
193 PRK10712 PTS system fructose-s 30.7 6E+02 0.013 30.6 12.9 212 227-475 242-462 (563)
194 PRK01821 hypothetical protein; 30.5 5E+02 0.011 25.0 11.3 104 48-168 9-115 (133)
195 TIGR00366 conserved hypothetic 30.2 9.3E+02 0.02 28.0 14.9 128 324-466 64-213 (438)
196 COG3763 Uncharacterized protei 29.6 2.5E+02 0.0055 23.7 6.6 32 256-287 5-36 (71)
197 PRK01658 holin-like protein; V 29.4 4.9E+02 0.011 24.6 11.9 105 48-169 4-111 (122)
198 PF01889 DUF63: Membrane prote 29.3 7.6E+02 0.017 26.8 16.3 28 207-234 169-196 (273)
199 TIGR00841 bass bile acid trans 27.6 6.1E+02 0.013 27.5 11.6 106 353-462 14-121 (286)
200 PF03686 UPF0146: Uncharacteri 27.2 1.1E+02 0.0024 29.0 4.8 37 574-610 72-108 (127)
201 KOG2718 Na+-bile acid cotransp 27.2 1.2E+02 0.0026 34.3 6.0 46 124-170 117-162 (371)
202 PF10136 SpecificRecomb: Site- 27.2 4.2E+02 0.009 32.4 10.8 26 38-64 461-486 (643)
203 PF04018 DUF368: Domain of unk 25.9 8.5E+02 0.018 26.2 15.7 44 43-88 54-97 (257)
204 PF02667 SCFA_trans: Short cha 25.6 1.1E+03 0.024 27.5 14.9 128 324-466 67-216 (453)
205 COG4858 Uncharacterized membra 25.4 7.3E+02 0.016 25.2 10.3 50 38-87 89-138 (226)
206 COG1055 ArsB Na+/H+ antiporter 25.3 1.1E+03 0.024 27.3 19.7 33 62-96 13-45 (424)
207 COG3493 CitS Na+/citrate sympo 25.1 1.1E+03 0.023 27.0 14.1 96 65-174 281-379 (438)
208 TIGR02359 thiW thiW protein. L 24.8 6.9E+02 0.015 24.8 11.0 15 75-89 34-48 (160)
209 COG0037 MesJ tRNA(Ile)-lysidin 24.6 2.3E+02 0.005 30.6 7.7 36 663-700 22-57 (298)
210 PRK05274 2-keto-3-deoxyglucona 24.5 9.4E+02 0.02 26.8 12.3 47 126-172 205-251 (326)
211 TIGR00347 bioD dethiobiotin sy 23.6 1.6E+02 0.0034 28.8 5.5 69 762-845 87-155 (166)
212 KOG2575 Glucosyltransferase - 23.3 1.2E+03 0.025 26.9 13.7 147 305-468 198-351 (510)
213 PRK09765 PTS system 2-O-a-mann 23.1 1.4E+03 0.031 27.9 17.8 27 261-287 418-444 (631)
214 TIGR02230 ATPase_gene1 F0F1-AT 22.9 2.3E+02 0.005 25.8 5.8 40 155-194 50-89 (100)
215 PRK00536 speE spermidine synth 22.4 3E+02 0.0066 29.6 7.7 73 732-836 108-181 (262)
216 PF00375 SDF: Sodium:dicarboxy 22.4 6.3E+02 0.014 28.8 10.9 120 117-237 179-304 (390)
217 TIGR00342 thiazole biosynthesi 22.2 2.6E+02 0.0056 31.7 7.6 36 662-701 172-207 (371)
218 PRK04148 hypothetical protein; 22.2 1.2E+02 0.0026 29.2 4.1 36 575-610 80-115 (134)
219 cd01713 PAPS_reductase This do 22.1 1.7E+02 0.0037 28.1 5.6 35 664-699 1-35 (173)
220 cd01985 ETF The electron trans 22.0 5.2E+02 0.011 25.7 9.1 26 672-698 18-43 (181)
221 PF01032 FecCD: FecCD transpor 22.0 3.4E+02 0.0073 30.0 8.3 28 63-90 33-60 (311)
222 KOG2722 Predicted membrane pro 21.6 1.3E+02 0.0027 33.9 4.6 95 337-434 39-137 (408)
223 PRK10334 mechanosensitive chan 21.4 9.8E+02 0.021 26.0 11.6 23 485-507 187-209 (286)
224 KOG1965 Sodium/hydrogen exchan 21.4 1.8E+02 0.0038 34.7 6.0 70 349-422 102-180 (575)
225 PF02665 Nitrate_red_gam: Nitr 21.3 9.3E+02 0.02 25.1 11.0 67 263-333 95-168 (222)
226 PRK00109 Holliday junction res 21.3 2E+02 0.0044 27.7 5.6 59 585-646 42-100 (138)
227 cd04734 OYE_like_3_FMN Old yel 20.7 7E+02 0.015 27.9 10.6 139 612-788 184-322 (343)
228 PF01507 PAPS_reduct: Phosphoa 20.6 2.1E+02 0.0046 27.8 5.9 32 664-699 1-32 (174)
229 COG1380 Putative effector of m 20.6 7.5E+02 0.016 23.6 10.8 105 47-168 4-111 (128)
230 PRK01844 hypothetical protein; 20.3 2.6E+02 0.0057 23.8 5.1 30 258-287 7-36 (72)
231 COG0385 Predicted Na+-dependen 20.0 1.2E+03 0.026 25.8 12.3 77 350-428 41-121 (319)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.1e-151 Score=1375.21 Aligned_cols=784 Identities=43% Similarity=0.772 Sum_probs=701.7
Q ss_pred ccccccccccCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhH
Q 043953 23 QVCYPEEFNKYDSPWQRQNPMMRAVPLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTI 102 (868)
Q Consensus 23 ~~c~~~~~~~s~g~~~~~~pl~~~l~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~ 102 (868)
.+|+.+.+.+|+|+|+|+||+++++|++++|+++++++++++++++||+|||++++||++|+++||+++|+++.
T Consensus 17 ~~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~------ 90 (832)
T PLN03159 17 VVCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEV------ 90 (832)
T ss_pred cccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChh------
Confidence 36996667899999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcch
Q 043953 103 VKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPN 182 (868)
Q Consensus 103 ~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~ 182 (868)
+.+.+||.++.+.+++++++|++|+||++|+|+|++.+|+++|+++.+|+.++++|+++|+++++++... .......
T Consensus 91 --~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~-~~~~~~~ 167 (832)
T PLN03159 91 --FANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQV-SRNVHQG 167 (832)
T ss_pred --hhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchh
Confidence 8899999988889999999999999999999999999999999999999999999999999888877432 1112223
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHH
Q 043953 183 LGALFWAISLTITSFPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAM 262 (868)
Q Consensus 183 ~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (868)
..++++|+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++.++... +.+. ...++.+
T Consensus 168 ~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~-----~~~~----~~~l~~~ 238 (832)
T PLN03159 168 TFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAEN-----DSTS----LASLWVL 238 (832)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcc----hhHHHHH
Confidence 567899999999999999999999999999999999999999999999999988776544 2222 3356667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHH
Q 043953 263 LPIICFILIFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIME 342 (868)
Q Consensus 263 ~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~ 342 (868)
+..+++++++.+++||++.|+.|++ +++++.++.++.+++++++++++++|.+|+|+++|||++|+++|++++++++.+
T Consensus 239 l~~~~f~~~~~~v~r~~~~~~~r~~-~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~e 317 (832)
T PLN03159 239 LSSVAFVLFCFYVVRPGIWWIIRRT-PEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIE 317 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-cCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHH
Confidence 7777888888999999999999999 888888999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHH
Q 043953 343 RTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMAL 422 (868)
Q Consensus 343 ~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~l 422 (868)
|+++++.++|+|+||+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++
T Consensus 318 kle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~L 397 (832)
T PLN03159 318 KLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEM 397 (832)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHH
Confidence 99999999999999999999999988865435666777788899999999999999999999999999999999999999
Q ss_pred HHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHhhhHhhHhhhhhhhhhccCCCCCCCeEEEeecCCCChhhHHHH
Q 043953 423 IVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLANKKAKRTRKYKQRTIQRRNPDTELRILTCIHSVGNLSGIINL 502 (868)
Q Consensus 423 il~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~L 502 (868)
++++++++.|+++++.|++++++++++|++++|++.++|+|+||+..|++|++++.++++|+|||+|+|++++++++++|
T Consensus 398 ii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~L 477 (832)
T PLN03159 398 IVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINL 477 (832)
T ss_pred HHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHHHHhhCCCeeEEEEEEEecC
Q 043953 503 LELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRHYQDRNDDITVQPLTAVSSF 582 (868)
Q Consensus 503 l~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~ 582 (868)
++++++++++|+++|++||||+++|++|++++|+.+++..+..++ ...++|+++++|+.|++++++++|+++|++|||
T Consensus 478 le~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~--~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~ 555 (832)
T PLN03159 478 LEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNR--TQAQSDHIINAFENYEQHAGCVSVQPLTAISPY 555 (832)
T ss_pred HHhcCCCCCCCceEEEEEEEeecCCCccceeeeeccccccccccc--ccccccHHHHHHHHHHhhcCceEEEEEEEEeCc
Confidence 999999999999999999999999999999999875433222211 234579999999999986458999999999999
Q ss_pred CCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecCCCCCccccccccccccCcc
Q 043953 583 TSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDRGIGSAVITSAQSSLHGRQG 662 (868)
Q Consensus 583 ~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~~~ 662 (868)
++||+|||++|+||++++||+||||+|+.||+++++++.+|.+|+|||++||||||||||||..+..+.+..+. .
T Consensus 556 ~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~-----~ 630 (832)
T PLN03159 556 STMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQV-----S 630 (832)
T ss_pred ccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCcccccccccc-----c
Confidence 99999999999999999999999999999999999999999999999999999999999999774322233333 6
Q ss_pred ceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCC-ccc-ccccccchhhhhhHHHHHHH
Q 043953 663 LKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTE-DED-LVDTARDVKEKELDDEFINE 740 (868)
Q Consensus 663 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~e~~~d~~~~~~ 740 (868)
+||+++|+|||||||||+||+|||+||++++||+||++.++..+.. .+....+ ++. .....+++.|+++||++++|
T Consensus 631 ~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~e 708 (832)
T PLN03159 631 HHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTA--SQPASSPSDPRIPTVETDGKKERQLDEEYINE 708 (832)
T ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEccccccccc--ccccccccccccccccccchhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999754322110 0000111 111 11111136788999999999
Q ss_pred HHhhcCCCCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCccc
Q 043953 741 FRFKTMYDSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHAS 820 (868)
Q Consensus 741 ~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~S 820 (868)
||.++..+++|.|.||+|+|++||+++||+|+++|||+||||+|+.+|++|+||+||+||||||+|||+|||+||.+++|
T Consensus 709 f~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~S 788 (832)
T PLN03159 709 FRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVS 788 (832)
T ss_pred HHHhcCCCCceEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCcee
Confidence 99999988999999999999999999999999999999999999878999999999999999999999999999999999
Q ss_pred EEEEecccccccch
Q 043953 821 VLVVQQSSSALFRS 834 (868)
Q Consensus 821 VLVvqq~~~~~~~~ 834 (868)
|||||||+.+.-..
T Consensus 789 VLVvQQ~~~~~~~~ 802 (832)
T PLN03159 789 VLVVQQYVGTGPQP 802 (832)
T ss_pred EEEEEeeccCCCCc
Confidence 99999999666544
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-122 Score=1104.13 Aligned_cols=757 Identities=39% Similarity=0.645 Sum_probs=688.1
Q ss_pred ccccCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhh
Q 043953 29 EFNKYDSPWQRQNPMMRAVPLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMK 108 (868)
Q Consensus 29 ~~~~s~g~~~~~~pl~~~l~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~ 108 (868)
++..+.|.|.|+||++|++|++++|+.+++++++++++++||+|||++++|+++||++||+.+|.+.. +.+.
T Consensus 3 ~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~--------~~~~ 74 (769)
T KOG1650|consen 3 VKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPS--------YMNT 74 (769)
T ss_pred CccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChh--------hhhc
Confidence 45688999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCc----chHH
Q 043953 109 LFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRES----PNLG 184 (868)
Q Consensus 109 lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~----~~~~ 184 (868)
+||.++...+++++.+|+.+++|+.|+|+|.+.+++++|++..+|+.++++|+..|..+...+......... ...+
T Consensus 75 ~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 154 (769)
T KOG1650|consen 75 IFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFE 154 (769)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHH
Confidence 999999999999999999999999999999999999999999999999999999999888777543321111 1126
Q ss_pred HHHHHHHHhhccHHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHH
Q 043953 185 ALFWAISLTITSFPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLP 264 (868)
Q Consensus 185 ~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (868)
..++..++|.|+||+++++|.|+|++++++||+++++++++|+++|.++++..++.... +.++ ....|.++.
T Consensus 155 ~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~----~~~~----~~~~~~~~~ 226 (769)
T KOG1650|consen 155 ILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSEL----KLSP----LRSVWDLVL 226 (769)
T ss_pred HHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccC----CCcc----hHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999998888877652 2233 556888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhc-hhhhHHHHHHHhhcCC-CchhhHHHH
Q 043953 265 IICFILIFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCG-MHSMAGGFIFGLIIPN-GELAINIME 342 (868)
Q Consensus 265 ~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g-~~~~lGafvaGl~l~~-~~~~~~l~~ 342 (868)
.+++++++.++.||.+.|+.||+ |++++.++.+...+++.+++++.+++.++ .|+++|||+.|+++|+ +|+++.+.+
T Consensus 227 ~~~~~l~~~~v~~p~~~wi~kr~-pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~e 305 (769)
T KOG1650|consen 227 VIGFVLFLFFVVRPLMKWIIKRT-PEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIE 305 (769)
T ss_pred HHHHHHheeeehhhhHHHHhhcC-CCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHH
Confidence 89999999999999999999998 99999999999999999999999999998 8999999999999999 999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHH
Q 043953 343 RTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMAL 422 (868)
Q Consensus 343 ~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~l 422 (868)
|+|+++.++|+|+||+.+|+++|+..+.. |......+...+++|++++..++.++|+|++|++.+|++|++||.+++
T Consensus 306 kle~~~~~~llPl~~~~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el 382 (769)
T KOG1650|consen 306 KLEDLVSGLLLPLYFAISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVEL 382 (769)
T ss_pred HHHHHHHHHHHHHHHHhhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999988876 777888888999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHhhhHhhHhhhhhhhhhccCCCCCCCeEEEeecCCCChhhHHHH
Q 043953 423 IVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLANKKAKRTRKYKQRTIQRRNPDTELRILTCIHSVGNLSGIINL 502 (868)
Q Consensus 423 il~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~L 502 (868)
++++.+.+.|+++++.|++++++++++|.+++|++..+|+|.+++..|++|++++.++++++|++.|+|+++++++++++
T Consensus 383 ~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~ 462 (769)
T KOG1650|consen 383 IVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINL 462 (769)
T ss_pred HHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHHHHhhC-CCeeEEEEEEEec
Q 043953 503 LELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRHYQDRN-DDITVQPLTAVSS 581 (868)
Q Consensus 503 l~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~ 581 (868)
++++.+++++|+++|++|+||+.+|+.|++++|+.++++.. + +....++++.++|+.|++.+ ..+.++++|+++|
T Consensus 463 le~~~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~--~--~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~ 538 (769)
T KOG1650|consen 463 LELSSGSLESPLSVYALHLVELVGRATPLLISHKLRKNGRV--E--SRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSP 538 (769)
T ss_pred HHHcCCCCCCCcceeeeeeeecccccchhhhhhhhcccccc--c--cccccchhhHHHHHHHHHhcCCcEEEEeehhhCC
Confidence 99999988889999999999999999999999987555311 1 13344578999999999954 6899999999999
Q ss_pred CCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecCCCCCccccccccccccCc
Q 043953 582 FTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDRGIGSAVITSAQSSLHGRQ 661 (868)
Q Consensus 582 ~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~~ 661 (868)
+++||+|||.+|.++++++|++||||+|+.++.+++.+..+|.+|++|+++|||||||+||||..+....+...+
T Consensus 539 ~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~----- 613 (769)
T KOG1650|consen 539 EKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGS----- 613 (769)
T ss_pred hhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccc-----
Confidence 999999999999999999999999999996668999999999999999999999999999998221111111223
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEF 741 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~ 741 (868)
.++|+++|+||+||||||+|++||++||.+++||+||++.++..+.. ..+++++.+|++..+++
T Consensus 614 ~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~----------------~~~~~~~~l~~~~~~~~ 677 (769)
T KOG1650|consen 614 SYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRK----------------VLVEVGKMLDQEGLEDF 677 (769)
T ss_pred eeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhccc----------------ccchhhhhhhhhHHHHH
Confidence 67999999999999999999999999999999999999765332110 01367788899888888
Q ss_pred -HhhcCCCCceEEE-EeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCcc
Q 043953 742 -RFKTMYDSSITYN-DKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHA 819 (868)
Q Consensus 742 -~~~~~~~~~v~y~-e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~ 819 (868)
+..+..+.++.|. ||+|+++.||.+++|+++++|||++|||+++.+++.+.|++||+||||||+|||.|+|+||+++.
T Consensus 678 ~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~ 757 (769)
T KOG1650|consen 678 VKSTRESNLDIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKV 757 (769)
T ss_pred HHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccccceEEEecccccccchhcCchhcccCccccccCccccccccCccc
Confidence 6666666788898 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccccc
Q 043953 820 SVLVVQQSSSA 830 (868)
Q Consensus 820 SVLVvqq~~~~ 830 (868)
||||+|||.+.
T Consensus 758 svlvvqq~~~~ 768 (769)
T KOG1650|consen 758 SVLVVQQQLYS 768 (769)
T ss_pred eEEEEEeeecC
Confidence 99999999753
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=8.9e-48 Score=456.43 Aligned_cols=417 Identities=16% Similarity=0.223 Sum_probs=337.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHH
Q 043953 48 PLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLT 127 (868)
Q Consensus 48 ~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~ 127 (868)
..++.++.+++.++.++..++||+|+|+++|||++|+++||+++|++.+ .+.++.++++|++
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~------------------~~~i~~laelGvv 65 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD------------------VESILHFAEFGVV 65 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC------------------HHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999998865 4678999999999
Q ss_pred HHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhc
Q 043953 128 FYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILSDV 207 (868)
Q Consensus 128 ~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 207 (868)
|+||.+|+|+|++.+|+.+|+++.+|..++++|+++++.++++++..+ ..++++|.+++.||++++.++|+|+
T Consensus 66 ~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~-------~~al~ig~~la~SStaiv~~~L~e~ 138 (621)
T PRK03562 66 LMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRW-------QVALLIGLGLALSSTAIAMQAMNER 138 (621)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888887776543 6799999999999999999999999
Q ss_pred CcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043953 208 KLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKET 287 (868)
Q Consensus 208 ~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~ 287 (868)
|+++++.||.+++.++++|+++|++++++..+...+ ..... ....+.++..++++++.+++.|++++++.++.
T Consensus 139 ~~l~t~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~ 211 (621)
T PRK03562 139 NLMVTQMGRSAFAILLFQDIAAIPLVAMIPLLAASG----ASTTL---GAFALSALKVAGALALVVLGGRYVTRPALRFV 211 (621)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCC----Cccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887655431 11110 11112222222222222333344444444433
Q ss_pred hhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhcccccc
Q 043953 288 KKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFL 367 (868)
Q Consensus 288 ~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~ 367 (868)
.+ .+.+|.+...+++++++++++++.+|+|+.+|||++|+++++.++++++.++++++ .++|+|+||+++|+++|+.
T Consensus 212 -~~-~~~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~ 288 (621)
T PRK03562 212 -AR-SGLREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFG 288 (621)
T ss_pred -HH-hCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHH
Confidence 22 12577888889999999999999999999999999999999999999999999999 7999999999999999998
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHHHHHHHH
Q 043953 368 ELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAAMVFMLL 447 (868)
Q Consensus 368 ~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~l 447 (868)
.+.. .|+.++.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.++++++
T Consensus 289 ~l~~--~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~ 366 (621)
T PRK03562 289 TLLE--NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVA 366 (621)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 8765 34455566667899999999999999999999999999999999999999999999999999999999998665
Q ss_pred HHHHhHHHHHHHhhhHhh-HhhhhhhhhhccCCCCCCCeEEEeecCCCChhhHHHHHHh
Q 043953 448 LMTGLVGPIFFLANKKAK-RTRKYKQRTIQRRNPDTELRILTCIHSVGNLSGIINLLEL 505 (868)
Q Consensus 448 v~t~i~~plv~~l~~~~~-~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~Ll~~ 505 (868)
+ |++++|++..++++.. +....+ +. .+...+.+-|+++|.++. .+..+.+.++.
T Consensus 367 l-S~~~tP~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~vII~G~Gr-~G~~va~~L~~ 421 (621)
T PRK03562 367 L-SMAATPLLLVLLDRLEQSRTEEA-RE-ADEIDEQQPRVIIAGFGR-FGQIVGRLLLS 421 (621)
T ss_pred H-HHHHHHHHHHhhhHHHHHHhhhc-cc-ccccccccCcEEEEecCh-HHHHHHHHHHh
Confidence 5 7888888777765421 111111 11 111122357899999987 66666665554
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=7.2e-47 Score=447.19 Aligned_cols=422 Identities=20% Similarity=0.233 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHH
Q 043953 50 LATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFY 129 (868)
Q Consensus 50 lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~l 129 (868)
++..++++++++.+++.++||+|+|++++||++|+++||+++|.+.+ .+.++.++++|++|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~------------------~~~~~~la~lGli~l 68 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD------------------TKLAPELAELGVILL 68 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc------------------hHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999998655 467889999999999
Q ss_pred HHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcCc
Q 043953 130 MFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILSDVKL 209 (868)
Q Consensus 130 lF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l 209 (868)
||.+|+|+|++.+|+.++..+..++.++++|+++++++++.++..+ ..++++|+++|.||++++.++++|+|+
T Consensus 69 lF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~al~lg~~ls~tS~~vv~~~L~e~~~ 141 (558)
T PRK10669 69 MFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSL-------MTGIVFGLCLSTASTVVLLRALEERQL 141 (558)
T ss_pred HHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999888888888899999999988887776443 678899999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043953 210 LHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKETKK 289 (868)
Q Consensus 210 l~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~ 289 (868)
++++.||+++++++++|+.+|+++.++..+..... ++..+....+....+.++..+++++++.++.|++.+|+.++. +
T Consensus 142 l~s~~G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 219 (558)
T PRK10669 142 IDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMME-QGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARS-A 219 (558)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 99999999999999999999999988766543210 001111000012344556666777778888999999999998 7
Q ss_pred hCCCCchhHHHHHHHHHHHHHHH-HHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhccccccc
Q 043953 290 KAGKFSDTHISVILLGVVVCGFI-ADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFLE 368 (868)
Q Consensus 290 ~~~~~~e~~~~~il~~~~~~~~l-ae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~ 368 (868)
+.+ .+|.+...++++++++++. ++.+|+|+++|||++|+++|+++.++++.+...++ .++|+|+||+++|+++|+..
T Consensus 220 ~~~-~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~ 297 (558)
T PRK10669 220 ATG-SRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMI 297 (558)
T ss_pred HhC-CchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHH
Confidence 654 6788888888888888764 69999999999999999999988888888888887 78999999999999999987
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHHHHHHHHH
Q 043953 369 LFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAAMVFMLLL 448 (868)
Q Consensus 369 l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv 448 (868)
+.+ .+..++.++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+++++++++
T Consensus 298 l~~--~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~ 375 (558)
T PRK10669 298 LIQ--QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAIL 375 (558)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 765 344455667778999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhHHHHHHHhhhHhhHhhhhhhh-h---hcc---CCCCCCCeEEEeecCCCChhhHHHHH
Q 043953 449 MTGLVGPIFFLANKKAKRTRKYKQR-T---IQR---RNPDTELRILTCIHSVGNLSGIINLL 503 (868)
Q Consensus 449 ~t~i~~plv~~l~~~~~~~~~~~~r-~---i~~---~~~~~elriLv~v~~~~~~~~li~Ll 503 (868)
+++++|.+.++..+..++..+.+.+ . .++ .+.+.+.|+++|.+++ -+..+.+.+
T Consensus 376 t~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~-~G~~la~~L 436 (558)
T PRK10669 376 SIMLNPVLFTLLERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGR-VGSLLGEKL 436 (558)
T ss_pred HHHHHHHHHHHhhHHHHHhhhccccccccccccccccccccCCCEEEECCCh-HHHHHHHHH
Confidence 6666665666554433322211111 0 111 1223357899999877 455444433
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1e-46 Score=446.80 Aligned_cols=415 Identities=20% Similarity=0.271 Sum_probs=334.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHH
Q 043953 49 LLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTF 128 (868)
Q Consensus 49 ~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~ 128 (868)
.++.++.+++.++.++..+++|+|+|+++||+++|+++||+++|++++ .+.+..++++|+++
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~------------------~~~i~~laelGvv~ 66 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD------------------VDEILHFSELGVVF 66 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc------------------HHHHHHHHHHHHHH
Confidence 357788999999999999999999999999999999999999998865 45688999999999
Q ss_pred HHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcC
Q 043953 129 YMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILSDVK 208 (868)
Q Consensus 129 llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ 208 (868)
+||.+|+|+|++.+|+.+|+++.+|..++++|+++++.+.++++.. +..++++|++++.||++++.++|+|+|
T Consensus 67 LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~-------~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 67 LMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFS-------WQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999988877766665433 377889999999999999999999999
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043953 209 LLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKETK 288 (868)
Q Consensus 209 ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~ 288 (868)
+++++.||++++.++++|+.+|++++++..+... .... ..+....+.++..+ +..++.|++.+++.++.
T Consensus 140 ~~~t~~G~~~l~vll~~Di~~i~ll~l~~~l~~~-----~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~- 208 (601)
T PRK03659 140 MNRSESGQLGFSVLLFQDLAVIPALALVPLLAGS-----ADEH-FDWMKIGMKVLAFA----GMLIGGRYLLRPLFRFI- 208 (601)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcc-hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999888765533 1111 01112222222222 22223344444444443
Q ss_pred hhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhccccccc
Q 043953 289 KKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFLE 368 (868)
Q Consensus 289 ~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~ 368 (868)
.+ .+.+|.++..+++++++++++++.+|+|+++|||++|+++++.++++++.++++++ .++|+|+||+++|+++|+..
T Consensus 209 ~~-~~~~e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~ 286 (601)
T PRK03659 209 AA-SGVREVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGV 286 (601)
T ss_pred HH-cCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHH
Confidence 11 23578889999999999999999999999999999999999988999999999999 79999999999999999988
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHHHHHHHHH
Q 043953 369 LFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAAMVFMLLL 448 (868)
Q Consensus 369 l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv 448 (868)
+.. .|..++.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.++.++++
T Consensus 287 l~~--~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l 364 (601)
T PRK03659 287 LYT--HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL 364 (601)
T ss_pred HHH--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 765 455666777788999999999999999999999999999999999999999999999999999999999776665
Q ss_pred HHHhHHHHHHHhhhH--hhHhhhhhhhhhccCCCCCCCeEEEeecCCCChhhHHHHHHh
Q 043953 449 MTGLVGPIFFLANKK--AKRTRKYKQRTIQRRNPDTELRILTCIHSVGNLSGIINLLEL 505 (868)
Q Consensus 449 ~t~i~~plv~~l~~~--~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~Ll~~ 505 (868)
|++++|++..++++ .+++....+....+...+.+.++++|.+++ -+..+.+.++.
T Consensus 365 -s~~~tP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vII~G~Gr-~G~~va~~L~~ 421 (601)
T PRK03659 365 -SMMTTPLLMKLIDKWLARRLNGPEEEDEKPWVEDDKPQVIIVGFGR-FGQVIGRLLMA 421 (601)
T ss_pred -HHHHHHHHHHHhHHHHHHhhccccccccccccccccCCEEEecCch-HHHHHHHHHHh
Confidence 67888888877765 333211101000011112356899999887 56655555553
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-44 Score=404.96 Aligned_cols=379 Identities=25% Similarity=0.418 Sum_probs=324.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHH
Q 043953 48 PLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLT 127 (868)
Q Consensus 48 ~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~ 127 (868)
...+.|+.++++++.+++.++||+|+|+++||+++|+++||..++.... ..+.++.++++|++
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~-----------------~~~~i~~laelGvi 67 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIE-----------------SSEIIELLAELGVV 67 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCC-----------------chHHHHHHHHHhHH
Confidence 3578899999999999999999999999999999999999955544433 27899999999999
Q ss_pred HHHHHHhhccChHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHH-hhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHH
Q 043953 128 FYMFLVGLEMDVSAVKRMEKK-SLSIAFAGIVIPFCIGAALHFV-PIHEGITRESPNLGALFWAISLTITSFPDLARILS 205 (868)
Q Consensus 128 ~llF~~Gle~d~~~l~~~~k~-~~~ia~~~~llp~~~g~~~~~~-l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 205 (868)
++||.+|+|+|++++|+++|+ +...+..++..|+.++....+. ++..+ ..++++|.+++.||+++++++++
T Consensus 68 ~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-------~~al~lg~~l~~sS~~i~~~iL~ 140 (397)
T COG0475 68 FLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL-------IAALFLGAALALSSTAIVLKILM 140 (397)
T ss_pred HHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8888888888888888665543 44333 67999999999999999999999
Q ss_pred hcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 206 DVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIK 285 (868)
Q Consensus 206 el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~ 285 (868)
|+|.++++.|++++++++++|+.++++++++..+.+.+ .... ...+.......++.++..+..|++.+++.|
T Consensus 141 e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g-----~~~~---~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r 212 (397)
T COG0475 141 ELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGG-----SGSV---GFILGLLLAILAFLALLLLLGRYLLPPLFR 212 (397)
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CccH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887652 2210 123444555566666666667888888888
Q ss_pred HhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchh-hHHHHHHHHHHHHhHHHHHHHHhhccc
Q 043953 286 ETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELA-INIMERTEEFISGVWLPSFIVVSGLRT 364 (868)
Q Consensus 286 ~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~-~~l~~~l~~~~~~l~~plfFv~~Gl~~ 364 (868)
+. .+ .+.+|.....++++++++++++|.+|+|.++|||++|+++++.+.+ ++++++++++.+++|.|+||+.+|+++
T Consensus 213 ~~-~~-~~~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~ 290 (397)
T COG0475 213 RV-AK-TESSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSL 290 (397)
T ss_pred HH-Hh-ccchHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHc
Confidence 87 33 2468899999999999999999999999999999999999997777 799999999977799999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHHHHH
Q 043953 365 NFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAAMVF 444 (868)
Q Consensus 365 dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~ 444 (868)
|+..+... +..++.++.+..++|.+++++.++..|.+.+++...|+.+.++|+++++.++.+.. +.++++.+..++.
T Consensus 291 dl~~l~~~--~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~ 367 (397)
T COG0475 291 DLGVLLEN--LLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVI 367 (397)
T ss_pred CHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHH
Confidence 99999874 55578888899999999999999999999999999999999999999999998887 6788888888877
Q ss_pred HHHHHHHhHHHHHHHhhhH
Q 043953 445 MLLLMTGLVGPIFFLANKK 463 (868)
Q Consensus 445 ~~lv~t~i~~plv~~l~~~ 463 (868)
+++++|.+.+++...+++.
T Consensus 368 ~smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 368 LSMITTPILPLLTPILLKR 386 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777666655555555543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.4e-39 Score=384.93 Aligned_cols=383 Identities=17% Similarity=0.159 Sum_probs=313.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHH
Q 043953 46 AVPLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLG 125 (868)
Q Consensus 46 ~l~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lg 125 (868)
++..++++++++++++.+++.+++|+++|.+++++++|+++||+++|.+.. +..+..+.++++|
T Consensus 3 ~~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~----------------~~~~~~~~i~~l~ 66 (562)
T PRK05326 3 TINSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF----------------DNYPLAYLVGNLA 66 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc----------------CcHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999997543 1246789999999
Q ss_pred HHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHH
Q 043953 126 LTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGA-ALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARIL 204 (868)
Q Consensus 126 l~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~-~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 204 (868)
++++||..|+|+|++.+|+++++++.+++.++++|++++. +..++++.. +..++++|+++++||++++.+++
T Consensus 67 L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~-------~~~alllgai~s~Td~a~v~~iL 139 (562)
T PRK05326 67 LAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLD-------WLEGLLLGAIVGSTDAAAVFSLL 139 (562)
T ss_pred HHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------HHHHHHHhhhhccCchHHHHHHH
Confidence 9999999999999999999999999999999999987754 444455433 47899999999999999999999
Q ss_pred HhcCc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 205 SDVKL-LHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWM 283 (868)
Q Consensus 205 ~el~l-l~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l 283 (868)
+|.|+ +++++++++++++++||.++++++.++..+...+ ..+. . ...++.++..+++.++.+++.++++.|+
T Consensus 140 ~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~----~~~~--~-~~~~~~~~~~~~~g~~~G~~~g~l~~~l 212 (562)
T PRK05326 140 RGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGG----ETGL--S-WGFLLLFLQQFGLGALIGLLGGWLLVQL 212 (562)
T ss_pred hccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCC----CCcc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 6999999999999999999999988887766542 2111 0 2224455556666677778888999999
Q ss_pred HHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhc
Q 043953 284 IKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGL 362 (868)
Q Consensus 284 ~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl 362 (868)
.+|. .. ..++.+..+++.++++++++++.+|.|+++|+|++|+++++ ++..+...+++.+...+++.|+||+++|+
T Consensus 213 ~~~~-~~--~~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl 289 (562)
T PRK05326 213 LNRI-AL--PAEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGL 289 (562)
T ss_pred HHhc-cC--chhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 32 13456788889999999999999999999999999999998 43333334444444589999999999999
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCch-HHHHH
Q 043953 363 RTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDN-ILMAA 441 (868)
Q Consensus 363 ~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~-~~~~~ 441 (868)
.+|++.+.+. .+..+++.+++.+++|+++++++++.+++++||+..+||. ++||+++++++..+...++.+. ..|++
T Consensus 290 ~~~~~~l~~~-~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~ 367 (562)
T PRK05326 290 LVTPSRLLDI-ALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNV 367 (562)
T ss_pred HhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhh
Confidence 9999877642 3333334455678999999999999999999999999996 8999999999999999998864 56778
Q ss_pred HHHHHHHHHHhHHHHHHHhhhH
Q 043953 442 MVFMLLLMTGLVGPIFFLANKK 463 (868)
Q Consensus 442 lv~~~lv~t~i~~plv~~l~~~ 463 (868)
+.+++++++.+.++.+..+.++
T Consensus 368 ~~~vvl~S~~i~g~tl~~~a~~ 389 (562)
T PRK05326 368 VFFVVLVSLLLQGTTLPWAARK 389 (562)
T ss_pred hheeeHHHHHHHHhhHHHHHHH
Confidence 7777888777777777766543
No 8
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-35 Score=299.43 Aligned_cols=391 Identities=21% Similarity=0.301 Sum_probs=324.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHH
Q 043953 43 MMRAVPLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFS 122 (868)
Q Consensus 43 l~~~l~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la 122 (868)
|+++.|++- .+..-+..+++++.++.|+++|+.+||+++|+++||...|...+ ......++
T Consensus 1 m~h~tpli~-tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad------------------~~La~~LA 61 (408)
T COG4651 1 MHHDTPLIT-TIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVAD------------------QTLAPELA 61 (408)
T ss_pred CCCCchHHH-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccc------------------hhHHHHHH
Confidence 345555543 35556778899999999999999999999999999988887766 45666899
Q ss_pred HHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHH
Q 043953 123 SLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLAR 202 (868)
Q Consensus 123 ~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~ 202 (868)
++|++++||-+|++++++++.....-++--++.++.+....|....+.+++++ ...+.+|.++|..|+.|..|
T Consensus 62 elGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~-------~~glvfGlaLS~aSTVvllr 134 (408)
T COG4651 62 ELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF-------GTGIVFGLALSVASTVVLLR 134 (408)
T ss_pred HhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc-------ccceeeeehhhhHHHHHHHH
Confidence 99999999999999999999877666666677777888888888888888766 45788999999999999999
Q ss_pred HHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 203 ILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAW 282 (868)
Q Consensus 203 iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~ 282 (868)
.|+|.++.+++.||++++.-+++|+..++.+.+..++++..+. ......+......+...+...|.+++.++.|++.+|
T Consensus 135 aLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~-~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw 213 (408)
T COG4651 135 ALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQ-GDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPW 213 (408)
T ss_pred HHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhcc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888776654210 011111111234456678889999999999999999
Q ss_pred HHHHhhhhCCCCchhHHHHHHHHHHHHHH-HHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhh
Q 043953 283 MIKETKKKAGKFSDTHISVILLGVVVCGF-IADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSG 361 (868)
Q Consensus 283 l~~~~~~~~~~~~e~~~~~il~~~~~~~~-lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~G 361 (868)
+..+....| .+|.+...++..+++.++ .++.+|+++.+|||++|+++.+++..++..+..-++ .+.|.-+||+++|
T Consensus 214 ~le~~a~tG--srElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpL-rdaFaVlFFvsVG 290 (408)
T COG4651 214 ILERVAATG--SRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPL-RDAFAVLFFVSVG 290 (408)
T ss_pred HHHHHHHcC--cHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCH-HHHHHHHHHHHhh
Confidence 999983344 589999999999999887 668999999999999999999999999999888888 8999999999999
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHH
Q 043953 362 LRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAA 441 (868)
Q Consensus 362 l~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~ 441 (868)
|..|+..+.+. .+ .++..++...++|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++++..-..
T Consensus 291 mlf~P~~l~~~-pl-~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~L 368 (408)
T COG4651 291 MLFDPMILIQQ-PL-AVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDL 368 (408)
T ss_pred hhcCcHHhhcc-hH-HHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHH
Confidence 99999887764 33 45556667788999999999999999999999999999999999999999999999999665555
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHhhH
Q 043953 442 MVFMLLLMTGLVGPIFFLANKKAKR 466 (868)
Q Consensus 442 lv~~~lv~t~i~~plv~~l~~~~~~ 466 (868)
++.. -+.+++..|+.....++-++
T Consensus 369 vlag-ailsIl~nPllf~~~dr~~~ 392 (408)
T COG4651 369 VLAG-AILSILLNPLLFALLDRYQR 392 (408)
T ss_pred HHHH-HHHHHHHhHHHHHHHHHHhh
Confidence 5444 45588899988776654333
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=4.2e-35 Score=316.84 Aligned_cols=271 Identities=23% Similarity=0.351 Sum_probs=234.9
Q ss_pred HHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccC
Q 043953 59 VAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMD 138 (868)
Q Consensus 59 ~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d 138 (868)
+++.+++.++||+|+|++++++++|+++||+++|.+++ .+.++.++++|+++++|.+|+|+|
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~------------------~~~~~~l~~igl~~llF~~Gl~~d 63 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN------------------VEGVNHLAEFGVILLMFLIGLELD 63 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC------------------hHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46778899999999999999999999999999998765 467999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcCcccChhHHH
Q 043953 139 VSAVKRMEKKSLSIAFAGIVIP-FCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILSDVKLLHTDIGKT 217 (868)
Q Consensus 139 ~~~l~~~~k~~~~ia~~~~llp-~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l 217 (868)
++.+||++|++..+++.++++| +++++.++++++..+ ..++++|+++++||++++.++++|+|+.+++.|++
T Consensus 64 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l 136 (273)
T TIGR00932 64 LERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLGLAL-------GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQT 136 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHH
Confidence 9999999999999999999999 777777777766443 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchh
Q 043953 218 ALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKETKKKAGKFSDT 297 (868)
Q Consensus 218 ~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~e~ 297 (868)
+++++++||+.+++++.+........ +.+. ....+.+...+++.++.+++.++...|+.|+. ++.+ ..|.
T Consensus 137 ~l~~~~~~D~~~i~~l~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 206 (273)
T TIGR00932 137 VLGILLFQDIAVVPLLALLPLLATSA----STEH----VALALLLLKVFLAFLLLVLLGRWLLRPVLRLT-AELR-PSEL 206 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----Ccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC-CchH
Confidence 99999999999999998887765431 1111 22333444444455566677888999999988 6654 3578
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhcccc
Q 043953 298 HISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTN 365 (868)
Q Consensus 298 ~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~d 365 (868)
+...++.++++.++++|.+|.|+++|||++|+++++.+.++++.++++++. ++|.|+||+++|+++|
T Consensus 207 ~~~~~l~~~~~~~~la~~~g~s~~lgaf~aGl~~~~~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 207 FTAGSLLLMFGSAYFADLLGLSMALGAFLAGVVLSESEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcCCchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 888999999999999999999999999999999999666888999999997 9999999999999986
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=3.2e-39 Score=365.76 Aligned_cols=373 Identities=25% Similarity=0.424 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhh
Q 043953 56 FAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGL 135 (868)
Q Consensus 56 lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gl 135 (868)
++++.+.+.+.++||+++|.+++|+++|+++||.+++..++ + ....+.++++|+.+++|.+|+
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~----------------~-~~~~~~l~~i~l~~llF~~G~ 65 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP----------------D-NPSFELLAEIGLAFLLFEAGL 65 (380)
T ss_dssp --------------------------------------------------------------S-SSHHHHS--SSHHHHT
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc----------------h-hhHHHHHHHHHHHHHHHHHHH
Confidence 34555667777899999999999999999999998886655 0 367889999999999999999
Q ss_pred ccChHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHh-hhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcCcccCh
Q 043953 136 EMDVSAVKRMEKKSLSIAFAGIVIPFCI-GAALHFVP-IHEGITRESPNLGALFWAISLTITSFPDLARILSDVKLLHTD 213 (868)
Q Consensus 136 e~d~~~l~~~~k~~~~ia~~~~llp~~~-g~~~~~~l-~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 213 (868)
|+|.+.+|+++|+++.+++.++++|+++ ++.+++++ ...+ .+..++++|.+++.||++++.++++|.+..+++
T Consensus 66 ~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~ 140 (380)
T PF00999_consen 66 ELDIKELRRNWRRALALGLVGFLLPFILVGFLLSFFLFILGL-----SWAEALLLGAILSATSPAIVSPVLKELGLLPSR 140 (380)
T ss_dssp TGGGG------------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SST
T ss_pred hhcccccccccccccccccceeeehhhHHHHHHHHhhccchh-----hhHHHhhhHHhhhcccccchhhhhhhhhccccc
Confidence 9999999999999999999999999888 77776432 1111 237789999999999999999999998889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 043953 214 IGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKETKKKAGK 293 (868)
Q Consensus 214 ~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~ 293 (868)
.++++++++++||+++++++.+......... ..+. ......++..+....+.+++.+++..|+.|+. ++
T Consensus 141 ~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 209 (380)
T PF00999_consen 141 LGRLLLSESVINDIIAIILLSILISLAQASG---QSSL----GQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA----SP 209 (380)
T ss_dssp THHHHTTTTTTTTTTTTTTT------------------------------------------------------------
T ss_pred ccchhhhhchhhccchhhhhhhhhhhhcccc---cccc----cchhcchhhhhhhheeeecccchHHHHhhhhc----cc
Confidence 9999999999999999999988887762210 1111 12222223333333333333333333333331 24
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhccccccccc-ch
Q 043953 294 FSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELF-SK 372 (868)
Q Consensus 294 ~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~-~~ 372 (868)
.++.+..++++.++.+++++|.+|.|+++|+|++|+++++.+.++++.++++++.++++.|+||+.+|+++|++.+. +.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~ 289 (380)
T PF00999_consen 210 SSEIFILLVLALILLLYGLAEILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSP 289 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhHHHHHHHHhhhccccccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccch
Confidence 57888999999999999999999999999999999999998888889999999977999999999999999998885 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHHHHHHHHHHHHh
Q 043953 373 TKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAAMVFMLLLMTGL 452 (868)
Q Consensus 373 ~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i 452 (868)
..|...+.+++..+++|++++++.+++.|.++||++.+|+.|++||+++++++..+.+.|+++++.+++++.++++++.+
T Consensus 290 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii 369 (380)
T PF00999_consen 290 SVIILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIII 369 (380)
T ss_dssp ---------------------------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------
T ss_pred hhhhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHH
Confidence 25666777777788999999999999999999999999999999999999999999999999999999999988887666
Q ss_pred HHHHHHHhh
Q 043953 453 VGPIFFLAN 461 (868)
Q Consensus 453 ~~plv~~l~ 461 (868)
.++.++.+.
T Consensus 370 ~~~~~~~l~ 378 (380)
T PF00999_consen 370 AGIILSPLL 378 (380)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 666666544
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.97 E-value=3.6e-28 Score=284.27 Aligned_cols=373 Identities=13% Similarity=0.109 Sum_probs=267.0
Q ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcch
Q 043953 36 PWQRQNPMMRAVPLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENT 115 (868)
Q Consensus 36 ~~~~~~pl~~~l~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~ 115 (868)
.|..-++-+..+..+ +.-+++++++.+..++.+|+.+|.++.++++|+++||.+++++.+ .. + .....
T Consensus 2 ~w~~l~~~~~~l~~~-~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP--------~~-~--g~~d~ 69 (810)
T TIGR00844 2 IWEQLEVTKAHVAYS-CVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNP--------LS-W--GNTDS 69 (810)
T ss_pred CcccccccchhhHHH-HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCCh--------hh-c--ccchH
Confidence 355555555454222 222334444555555556999999999999999999999987765 10 0 00112
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhc
Q 043953 116 VLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTIT 195 (868)
Q Consensus 116 ~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 195 (868)
..++ ++++++.+.+|.+|++++.+.+++.|+.++.+++.++.++++++.++++++...+ .+..++++|+++++|
T Consensus 70 i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL-----~~~~ALLLGAILAPT 143 (810)
T TIGR00844 70 ITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL-----NFPASLLMGACITAT 143 (810)
T ss_pred HHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHhhhcCC
Confidence 3444 9999999999999999999999999999999999999999998888887664333 257899999999999
Q ss_pred cHHHHHHHHH---hcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 043953 196 SFPDLARILS---DVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIF 272 (868)
Q Consensus 196 s~~vv~~iL~---el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 272 (868)
++.....+++ ..+ ++.++..++.+++.+||.++++++.+++.+...... +......| .+..++..+++++++
T Consensus 144 DPVLAssV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~--g~~~~~~w--~l~~~L~~i~~Gili 218 (810)
T TIGR00844 144 DPVLAQSVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGR--GGEIVKDW--ICVTILWECIFGSIL 218 (810)
T ss_pred cHHHHHHHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCc--cccchhhH--HHHHHHHHHHHHHHH
Confidence 9877777776 234 578999999999999999999988777655532100 11110011 122333334444444
Q ss_pred HHHHHHHHHHHHHHhhhhC-CCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CchhhH-HHHHHHHHHH
Q 043953 273 WFVLRPCIAWMIKETKKKA-GKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GELAIN-IMERTEEFIS 349 (868)
Q Consensus 273 ~~v~r~~~~~l~~~~~~~~-~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~~~~-l~~~l~~~~~ 349 (868)
+++++++..|++++. .+. ....+.+..+.++++++++.+++.+|.++++++|++|+++.+ ..+.++ -...+.....
T Consensus 219 G~vvG~l~~~Ll~~l-~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie 297 (810)
T TIGR00844 219 GCIIGYCGRKAIRFA-EGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVID 297 (810)
T ss_pred HHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHH
Confidence 444455555555443 211 113456677788888899999999999999999999999998 432222 2233555567
Q ss_pred HhHHHHHHHHhhcccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhhhhhHHHH
Q 043953 350 GVWLPSFIVVSGLRTNFLELFS----KTKLFYLLLTTIVATSAKILSTVLVALCY--GMPVRDGVALGGLMNTKGVMALI 423 (868)
Q Consensus 350 ~l~~plfFv~~Gl~~dl~~l~~----~~~~~~~~~ii~~~~~~K~l~~~l~~~~~--~~~~~e~~~lg~~m~~rG~v~li 423 (868)
.++..++|+++|+.+....+.. ...|..+++.+++.++.|+.++++...+. ..+++|++++||. ++||..++.
T Consensus 298 ~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWF-GpRGIGSIy 376 (810)
T TIGR00844 298 VLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHF-GPIGVGAVF 376 (810)
T ss_pred HHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheee-ccccHHHHH
Confidence 8899999999999998766643 12466677777788889988888765544 4689999999997 999999999
Q ss_pred HHhhcccccc
Q 043953 424 VLNEGRSLKA 433 (868)
Q Consensus 424 l~~~~~~~~i 433 (868)
++.++++.+.
T Consensus 377 yl~~A~~~~~ 386 (810)
T TIGR00844 377 AAILSKSQLE 386 (810)
T ss_pred HHHHHHHhhh
Confidence 9998877654
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=8.9e-28 Score=280.70 Aligned_cols=369 Identities=12% Similarity=0.031 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHh
Q 043953 55 GFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVG 134 (868)
Q Consensus 55 ~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~G 134 (868)
..+++++.....+++|+++|.+++++++|+++||..++...+ ++ . +.+..+++.++||..|
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~-------------~~---~---~~~~~~~Lp~lLF~~g 64 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVP-------------LD---R---EIVLFLFLPPLLFEAA 64 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCC-------------CC---H---HHHHHHHHHHHHHHHH
Confidence 344556667788999999999999999999999854332111 00 1 2344588999999999
Q ss_pred hccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcCcccChh
Q 043953 135 LEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILSDVKLLHTDI 214 (868)
Q Consensus 135 le~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 214 (868)
+++|++.+|++++.+..+++.++++|++++..+.+++. .+ .+..++++|+++|+||++++.+++++.+. ++++
T Consensus 65 ~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~~~-~l-----~~~~alllGails~TDpvav~~il~~~~~-p~rl 137 (525)
T TIGR00831 65 MNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWIL-GI-----PLALALILGAVLSPTDAVAVLGTFKSIRA-PKKL 137 (525)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-----cHHHHHHHHHHhCCCCHHHHHHHHhcCCC-CHHH
Confidence 99999999999999999999999999888766665432 22 25889999999999999999999999886 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCC
Q 043953 215 GKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKETKKKAGKF 294 (868)
Q Consensus 215 g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~ 294 (868)
.+++.+++++||.++++++.++..+..+.. ..+. ......++..++.+++++++++++..|+.|+. .+ .
T Consensus 138 ~~il~gESllND~~alvlf~~~~~~~~~~~---~~~~----~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~-~~---~ 206 (525)
T TIGR00831 138 SILLEGESLLNDGAALVVFAIAVAVALGKG---VFDP----LNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK-ID---D 206 (525)
T ss_pred HHHHhhhhhhcchHHHHHHHHHHHHHhcCC---CCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc---c
Confidence 999999999999999999998887765310 2222 23333444444445555566666677776654 32 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Cch---hhH---HHHHHHHHHHHhHHHHHHHHhhcccccc
Q 043953 295 SDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GEL---AIN---IMERTEEFISGVWLPSFIVVSGLRTNFL 367 (868)
Q Consensus 295 ~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~---~~~---l~~~l~~~~~~l~~plfFv~~Gl~~dl~ 367 (868)
+.....+++++++++++++|.+|.|+++++|++|+++++ .+. ..+ -.+.+......++.+++|+++|++++..
T Consensus 207 ~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~ 286 (525)
T TIGR00831 207 PLVEIALTILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGT 286 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888999999999999999999999999999998 332 111 1223334457899999999999998642
Q ss_pred cc--cc-h---h---hHHH---HHHHHHHHHHHHHHHHHHHH--HH-----hCCChHHHHHHHHHHhhhhhHHHHHHhhc
Q 043953 368 EL--FS-K---T---KLFY---LLLTTIVATSAKILSTVLVA--LC-----YGMPVRDGVALGGLMNTKGVMALIVLNEG 428 (868)
Q Consensus 368 ~l--~~-~---~---~~~~---~~~ii~~~~~~K~l~~~l~~--~~-----~~~~~~e~~~lg~~m~~rG~v~lil~~~~ 428 (868)
.. .. . . .+.. .+++.....+.|++.++... ++ .+++||+.+.++|. +.||.++++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~-G~RG~vslA~al~~ 365 (525)
T TIGR00831 287 IFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWA-GLRGAIPLALALSF 365 (525)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheec-cchHHHHHHHHHHc
Confidence 11 10 0 0 0100 11222233445665443321 11 24789999999997 99999999988643
Q ss_pred cc---c-------ccCchHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043953 429 RS---L-------KAIDNILMAAMVFMLLLMTGLVGPIFFLAN 461 (868)
Q Consensus 429 ~~---~-------~ii~~~~~~~lv~~~lv~t~i~~plv~~l~ 461 (868)
.. . ..+-.-.+.+++++.++.+...+|+++++-
T Consensus 366 p~~~~~g~~~p~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 366 PNQLLSGMAFPARYELVFLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 21 1 122233455666677777767777777754
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3e-25 Score=252.53 Aligned_cols=382 Identities=18% Similarity=0.149 Sum_probs=292.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHH
Q 043953 49 LLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTF 128 (868)
Q Consensus 49 ~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~ 128 (868)
..++++.+++.++.+...+.+|+..|.+...++.|++.||.+++...++ ....-+.+..+.+..
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~----------------~~~~~el~~~l~l~i 69 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPD----------------LELDPELFLVLFLAI 69 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccc----------------ccCChHHHHHHHHHH
Confidence 4577888888999999999999999999999999999999888876651 111223333899999
Q ss_pred HHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcC
Q 043953 129 YMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILSDVK 208 (868)
Q Consensus 129 llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ 208 (868)
++|..|+++|.+.+|++++.+..+++.+++++.+......+++.+.+ .+..++.+|+++|+|++.++.+++++.+
T Consensus 70 lLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i-----~~~~a~l~gAilspTDPv~v~~i~~~~~ 144 (429)
T COG0025 70 LLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGI-----PLAAAFLLGAILSPTDPVAVSPIFKRVR 144 (429)
T ss_pred HHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----hHHHHHHHhHHhcCCCchhhHHHHhcCC
Confidence 99999999999999999999999999999999776666666664332 3578999999999999999999999977
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043953 209 LLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKETK 288 (868)
Q Consensus 209 ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~ 288 (868)
. +.++.+++.+++++||..+++++.+...+..... ..+. ......++..+..++.++++.+.+..|+.++..
T Consensus 145 v-p~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~---~~~~----~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~ 216 (429)
T COG0025 145 V-PKRIRTILEGESLLNDGVGIVLFKVALAALLGTG---AFSL----GWALLLFLIEALGGILLGLLLGYLLGRLLRRLD 216 (429)
T ss_pred C-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccC---CCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 9999999999999999999999999988876420 1111 233334444444444555555555556655551
Q ss_pred hhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcC---C---Cchh-hHHHHHHHHHHHHhHHHHHHHHhh
Q 043953 289 KKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIP---N---GELA-INIMERTEEFISGVWLPSFIVVSG 361 (868)
Q Consensus 289 ~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~---~---~~~~-~~l~~~l~~~~~~l~~plfFv~~G 361 (868)
..+.........+.+..++..+.++|.+|.|++++++++|++.. . .+.. +...+.+......++.-+.|++.|
T Consensus 217 ~~~~~~~~~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG 296 (429)
T COG0025 217 RRGWTSPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLG 296 (429)
T ss_pred HccccchHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112356678899999999999999999999999999998773 1 2212 233333445558899999999999
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChHHHHHHHHHHhhhhhHHHHHHhhcccc----
Q 043953 362 LRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYG------MPVRDGVALGGLMNTKGVMALIVLNEGRSL---- 431 (868)
Q Consensus 362 l~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~------~~~~e~~~lg~~m~~rG~v~lil~~~~~~~---- 431 (868)
++++....... .+..+++.++..+++|++++++..+..+ .+++++++++|. ++||.++++++......
T Consensus 297 ~~i~~~~~~~~-~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p~~~~~~ 374 (429)
T COG0025 297 AQLPLSLLLAL-GLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIPLELPGP 374 (429)
T ss_pred HhhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHchhhccch
Confidence 99998887664 4667888888999999999999998853 799999999998 99999999998865522
Q ss_pred --ccCchHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043953 432 --KAIDNILMAAMVFMLLLMTGLVGPIFFLAN 461 (868)
Q Consensus 432 --~ii~~~~~~~lv~~~lv~t~i~~plv~~l~ 461 (868)
..+-.-.+.++++++++.+...+|+.++..
T Consensus 375 ~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~ 406 (429)
T COG0025 375 ARELILFIVFLVILFSLLVQGLTLPPLAKKLE 406 (429)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 123334455556666666666666666544
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.94 E-value=9.2e-24 Score=246.77 Aligned_cols=379 Identities=10% Similarity=0.066 Sum_probs=262.0
Q ss_pred HHHHHHHHHhh-ccc-CCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhh
Q 043953 58 IVAIRLFIILL-KPL-HQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGL 135 (868)
Q Consensus 58 l~~~~l~~~l~-~rl-~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gl 135 (868)
..++.+...+. |+. ++|..+..++.|+++|+...+....+ ..-+ .-+.+-.+.+..++|..|+
T Consensus 18 ~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~---------~~~l------~~~lf~~~~LPpIlFe~g~ 82 (559)
T TIGR00840 18 ASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHID---------PPTL------DSSYFFLYLLPPIVLDAGY 82 (559)
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCc---------cCCc------CHHHHHHHHHHHHHHHHHh
Confidence 33344444433 444 49999999999999998543321110 0001 1245556678889999999
Q ss_pred ccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCCCcchHHHHHHHHHHhhccHHHHHHHHHhcCcccCh
Q 043953 136 EMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEG--ITRESPNLGALFWAISLTITSFPDLARILSDVKLLHTD 213 (868)
Q Consensus 136 e~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~--~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 213 (868)
++|.+.++++.+.++.+|+.+++++.++.....+++.... ......+..++.+|+++|+|++.++..++++.+. +.+
T Consensus 83 ~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v-~~~ 161 (559)
T TIGR00840 83 FMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHV-NEK 161 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCC-Ccc
Confidence 9999999999999999999999999665555444332211 1111246889999999999999999999999996 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 043953 214 IGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKETKKKAGK 293 (868)
Q Consensus 214 ~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~ 293 (868)
+-.++.++|++||.++++++.++..+...+.. ..+. .++......++...+.+++++++.+.+..++.|+. ...
T Consensus 162 L~~ll~gESllNDavaIVLf~~~~~~~~~~~~--~~~~-~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~-~~~-- 235 (559)
T TIGR00840 162 LYIIIFGESLLNDAVTVVLYNTFIKFHKTADE--PVTI-VDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFT-HHI-- 235 (559)
T ss_pred hhhheehhhhhhccHHHHHHHHHHHHHhcCCC--CccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--
Confidence 99999999999999999999888876642100 1111 11112222222222335566666777777888876 322
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC------CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccc
Q 043953 294 FSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN------GELAINIMERTEEFISGVWLPSFIVVSGLRTNFL 367 (868)
Q Consensus 294 ~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~------~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~ 367 (868)
+.....+++++++++++++|.+|.|++++++++|+++.+ .+..+.-.+.+......++..+.|+++|+.+...
T Consensus 236 -~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~ 314 (559)
T TIGR00840 236 -RQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTE 314 (559)
T ss_pred -chhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346677888999999999999999999999999999964 2222222233444447888999999999976322
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHhhhhhHHHHHHhhccccccCch-----
Q 043953 368 ELFSKTKLFYLLLTTIVATSAKILSTVLVALCY------GMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDN----- 436 (868)
Q Consensus 368 ~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~------~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~----- 436 (868)
. ..+.|..+++.+++.+++|+++++..++.. +++++|.+.++|. +.||.++++++....+.+.-..
T Consensus 315 ~--~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~-GlRGaVa~aLAl~l~~~~~~~~~~i~~ 391 (559)
T TIGR00840 315 N--HEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYA-GLRGAVAFALALLLDEKIFPYKFLFVT 391 (559)
T ss_pred h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheeee-ccccHHHHHHHHhCCCCCcchHHHHHH
Confidence 1 112455555566677889999988776543 5799999999997 9999999998876544332222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhh
Q 043953 437 ILMAAMVFMLLLMTGLVGPIFFLANK 462 (868)
Q Consensus 437 ~~~~~lv~~~lv~t~i~~plv~~l~~ 462 (868)
.++.++++++++....++|+++++.-
T Consensus 392 ~t~~VVl~TvlvqG~T~~pl~~~L~l 417 (559)
T TIGR00840 392 TTLVVVFFTVIFQGGTIKPLVEVLKV 417 (559)
T ss_pred HHHeeehHHHHHHHhhHHHHHHHhCC
Confidence 33444455666666667888887653
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=232.03 Aligned_cols=354 Identities=16% Similarity=0.149 Sum_probs=296.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHH
Q 043953 46 AVPLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLG 125 (868)
Q Consensus 46 ~l~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lg 125 (868)
++..+++.-.++++++.+.+.++.|+|.|..+-++..|++.|--++|.+.- ++.+....+++++
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f----------------dNy~~Ay~vg~lA 67 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF----------------DNYPFAYMVGNLA 67 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc----------------CccHHHHHHHHHH
Confidence 344455555577788889999999999999999999999999999986654 2367788999999
Q ss_pred HHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHH
Q 043953 126 LTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCI-GAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARIL 204 (868)
Q Consensus 126 l~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~-g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 204 (868)
+++++|-.|+.+.++.+|...++++.++.++++++-.+ |.+..|.+... |.+++++|+++..|+.+.+..+|
T Consensus 68 LaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~-------wle~~LiGAiVgSTDAAAVF~lL 140 (574)
T COG3263 68 LAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLD-------WLEGLLIGAIVGSTDAAAVFSLL 140 (574)
T ss_pred HHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHhhccccHHHHHHHH
Confidence 99999999999999999999999999999999998555 44555555554 48999999999999999999999
Q ss_pred HhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 205 SDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMI 284 (868)
Q Consensus 205 ~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~ 284 (868)
.+.++ +.+++.++.-++--||-+++++....+.+...+ +.+. + ...+..++..++++++.++..+++..|++
T Consensus 141 ~~~nl-~erv~stLEiESGtNDPmAvfLTitlieli~~g----et~l--~-~~~ll~f~~q~glG~l~G~~gg~l~~~~I 212 (574)
T COG3263 141 GGKNL-NERVASTLEIESGSNDPMAVFLTITLIELIAGG----ETNL--S-WGFLLGFLQQFGLGLLLGLGGGKLLLQLI 212 (574)
T ss_pred ccCCh-hhhhhhhEEeecCCCCceeeehhHHHHHHHhcc----cccc--C-HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 98887 999999999999999999998877666665552 2211 0 22333466777788888888999999999
Q ss_pred HHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCc--hhhHHHHHHHHHHHHhHHHHHHHHhhc
Q 043953 285 KETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGE--LAINIMERTEEFISGVWLPSFIVVSGL 362 (868)
Q Consensus 285 ~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~--~~~~l~~~l~~~~~~l~~plfFv~~Gl 362 (868)
+|+ . -.+..+..+++...+..+.+++.+|.|++++.+++|+++.|.| .++.+.+..+.+ .++..-+.|...|+
T Consensus 213 nr~-n---Ld~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGL 287 (574)
T COG3263 213 NRI-N---LDSGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGL 287 (574)
T ss_pred Hhh-c---cccchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 998 2 2356788999999999999999999999999999999999944 456777888888 89999999999999
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchH
Q 043953 363 RTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNI 437 (868)
Q Consensus 363 ~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~ 437 (868)
.+.++++... ....+++.+.+.+++|++++|+...-++.+++|.++++|. +-||.++++++-...-.|.-+.+
T Consensus 288 LvtPsql~~i-avPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSWv-GLRGAv~IilAifpm~aglena~ 360 (574)
T COG3263 288 LVTPSQLLPI-AIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSWV-GLRGAVPIILAIFPMMAGLENAR 360 (574)
T ss_pred hcCHhhhhHh-hHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeehh-hcccchhhhHhhhHHhcCCccce
Confidence 9999888764 5666777888899999999999999999999999999997 99999999999876666655443
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.8e-17 Score=184.01 Aligned_cols=392 Identities=13% Similarity=0.118 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccC---CCchHHHHHHHHhhCcccccCcCCCCchhHHhh-hhhcCCCcchHHHHHHHHHHH
Q 043953 51 ATELGFAIVAIRLFIILLKPLH---QPRFIPELLTSILIGPSTFGTFESLSPDTIVKQ-MMKLFPYENTVLLETFSSLGL 126 (868)
Q Consensus 51 ll~i~lil~~~~l~~~l~~rl~---~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~-~~~lfp~~~~~~l~~la~lgl 126 (868)
++-.+++++++.+.++++++-| +|.-+.-++.|+++|-..... +...-. .. ....|.+ +.+-.+-+
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~-~~~~s~---~~~~~~~f~~------~~ff~vLL 106 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYS-SGGKSS---RGKRILVFSP------DLFFLVLL 106 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhc-CCCccc---ccceeEEecc------cHHHHHhh
Confidence 4445566777888899998888 999999999999998533211 110000 00 0001111 12222334
Q ss_pred HHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHH
Q 043953 127 TFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIP-FCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILS 205 (868)
Q Consensus 127 ~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp-~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 205 (868)
-.++|..|.+++.+.++++.......++.|..+. .++|.++.++.. ........+..++++|+++|.|++..+..++.
T Consensus 107 Ppiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfn 185 (575)
T KOG1965|consen 107 PPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFN 185 (575)
T ss_pred chhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHH
Confidence 4488999999999999999999999999988887 566666655533 22223335689999999999999999999999
Q ss_pred hcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 206 DVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIK 285 (868)
Q Consensus 206 el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~ 285 (868)
|++- ...+-.++-+++++||..+++++..+...... +.+... ....+..++..+..-..++...+.+-..+.|
T Consensus 186 el~v-d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~-----~~~~~~-~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK 258 (575)
T KOG1965|consen 186 ELGV-DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLG-----SLNDWT-AFSAIGNFLYTFFGSLGLGVAIGLISALVLK 258 (575)
T ss_pred HhCC-CcceeeeeecchhccchhHHHHHHHHHHHccC-----Cchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 77888999999999999999999988876554 222100 0112223333332223333334444444555
Q ss_pred HhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-C-----chhhHHHHHHHHHHHHhHHHHHHHH
Q 043953 286 ETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-G-----ELAINIMERTEEFISGVWLPSFIVV 359 (868)
Q Consensus 286 ~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~-----~~~~~l~~~l~~~~~~l~~plfFv~ 359 (868)
.+ .-+ +....+..+++++....+++||.+|+++++..+.+|+.+++ . +..+.-.+..-.+...+..-+-|.+
T Consensus 259 ~~-~l~-~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y 336 (575)
T KOG1965|consen 259 FL-YLR-RTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIY 336 (575)
T ss_pred HH-Hhc-CCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 322 34667789999999999999999999999999999999997 2 2333334444444578888889999
Q ss_pred hhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CChHHHHHHHHHHhhhhhHHHHHHhhc
Q 043953 360 SGLR-TNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYG----------MPVRDGVALGGLMNTKGVMALIVLNEG 428 (868)
Q Consensus 360 ~Gl~-~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~----------~~~~e~~~lg~~m~~rG~v~lil~~~~ 428 (868)
+|+. ++....... ....+....++.+++|.+-.+..+.+.+ ++.++-..++|.-..||.++++++..-
T Consensus 337 ~Gl~~f~~~k~~~~-~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~ 415 (575)
T KOG1965|consen 337 LGLSAFDFQKHVYK-SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGD 415 (575)
T ss_pred HhHHHhcccceeee-chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhh
Confidence 9963 333332221 1234556667778888888776666553 345556677776458999999988642
Q ss_pred c-c-----cccCchHHHHHHHHHHHHHHHhHHHHHHHhhhH
Q 043953 429 R-S-----LKAIDNILMAAMVFMLLLMTGLVGPIFFLANKK 463 (868)
Q Consensus 429 ~-~-----~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~~ 463 (868)
. + .+.+-..+..++++++++....+.|+++++...
T Consensus 416 ~~~~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~ 456 (575)
T KOG1965|consen 416 FTDSPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMIS 456 (575)
T ss_pred ccccccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccc
Confidence 2 1 134444555666677777788899999987753
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.4e-16 Score=164.00 Aligned_cols=351 Identities=15% Similarity=0.126 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 043953 54 LGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLV 133 (868)
Q Consensus 54 i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~ 133 (868)
-+.+.+++...-.+-+++-+...+--.+.|+++||+++++..+. .+ .+......-++.+-+-.=.|.+
T Consensus 19 g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~------~w------gn~d~it~ei~RvvLcvqvfav 86 (467)
T KOG4505|consen 19 GGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPN------SW------GNKDYITYEISRVVLCVQVFAV 86 (467)
T ss_pred hhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCc------cc------cCcchhhhhhhhhhHhHHHHHH
Confidence 34445555555566677777777777899999999999987762 01 1122344556777777788999
Q ss_pred hhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcC---cc
Q 043953 134 GLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILSDVK---LL 210 (868)
Q Consensus 134 Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~---ll 210 (868)
++|+....+.++|+..+++-..-++.-++..+...|.+.+.. ....++.+++++++|++.....+..+-+ ..
T Consensus 87 a~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~l-----nf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrv 161 (467)
T KOG4505|consen 87 AMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNL-----NFLTSLLIAACITATDPILSSSIVGGGKFAKRV 161 (467)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHccCCchhHHHHHhcCchHhhhC
Confidence 999999999999998887766655555666666666665443 2367899999999999766666666543 35
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043953 211 HTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTEL--GAFLMAMLPIICFILIFWFVLRPCIAWMIKETK 288 (868)
Q Consensus 211 ~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~ 288 (868)
+.++..++.+++..||.++++++-+.+-+..... .-..+.+| ...++.....++++.+++++.|..+++.-|+.
T Consensus 162 PeriR~lL~AESGcNDGMaipflflai~Ll~h~~---~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkr- 237 (467)
T KOG4505|consen 162 PERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKP---RRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKR- 237 (467)
T ss_pred hHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCc---hhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 6678889999999999999999988887765521 00111122 23344444444555556666665555544443
Q ss_pred hhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CchhhHHH-HHHHHHHHHhHHHHHHHHhhccccc
Q 043953 289 KKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GELAINIM-ERTEEFISGVWLPSFIVVSGLRTNF 366 (868)
Q Consensus 289 ~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~~~~l~-~~l~~~~~~l~~plfFv~~Gl~~dl 366 (868)
--..|+++.+-+++++.|+.+.+.+|.+.++-.|.||.+++. .-+.++.. .++..+...++.-.||++.|..+++
T Consensus 238 ---lid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipw 314 (467)
T KOG4505|consen 238 ---LIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPW 314 (467)
T ss_pred ---cccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccch
Confidence 234688999999999999999999999999999999999998 66655444 4677777788888999999999998
Q ss_pred ccccch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHhhhhhHHHHHHhhcc
Q 043953 367 LELFSK----TKLFYLLLTTIVATSAKILSTVLVALCYG--MPVRDGVALGGLMNTKGVMALIVLNEGR 429 (868)
Q Consensus 367 ~~l~~~----~~~~~~~~ii~~~~~~K~l~~~l~~~~~~--~~~~e~~~lg~~m~~rG~v~lil~~~~~ 429 (868)
+.++.. +.|-++++-+...+.-|+-.+++.-.+.. .+|||++++|+. +|.|.-++..+..+.
T Consensus 315 sqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGhF-GPIGVgAly~allar 382 (467)
T KOG4505|consen 315 SQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGHF-GPIGVGALYYALLAR 382 (467)
T ss_pred hhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhccC-CCccHHHHHHHHHHH
Confidence 887643 14655555555555556655554433321 379999999996 999998888776654
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.71 E-value=2.3e-14 Score=159.43 Aligned_cols=293 Identities=17% Similarity=0.209 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHhhccChH-------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHH
Q 043953 118 LETFSSLGLTFYMFLVGLEMDVS-------AVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAI 190 (868)
Q Consensus 118 l~~la~lgl~~llF~~Gle~d~~-------~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~ 190 (868)
.+-+-+.-..+|.|.+|+|+..+ ..||..-+ ..-++.|+++|.++-+++. ...+ ...--+ .
T Consensus 63 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~~~n----~~~~------~~~~GW-~ 130 (423)
T PRK14853 63 GTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYVAVN----LAGG------GALRGW-A 130 (423)
T ss_pred HHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHHHHh----CCch------hhhhhh-h
Confidence 34445555667889999999544 33333322 4577888999965544432 1110 111112 3
Q ss_pred HHhhccHHHHHHHHHhcCc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHH
Q 043953 191 SLTITSFPDLARILSDVKL-LHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFI 269 (868)
Q Consensus 191 ~ls~Ts~~vv~~iL~el~l-l~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 269 (868)
+-+.||.+....+|..+|. .++.++..+++.|++||+.++++++++. .. +.+ ..+...... .
T Consensus 131 Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~-----~i~-------~~~L~~a~~--~ 193 (423)
T PRK14853 131 IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TS-----ELN-------LEALLLALV--P 193 (423)
T ss_pred hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CC-----CCC-------HHHHHHHHH--H
Confidence 5577889999999999875 4889999999999999999999988776 11 222 122111111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-C-----------chh
Q 043953 270 LIFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-G-----------ELA 337 (868)
Q Consensus 270 ~~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~-----------~~~ 337 (868)
+++ .|+.+|. ++++.+.++++. +++.+..+..|+|+.+|+|++|+++|. + +..
T Consensus 194 ~~~--------l~~l~~~-----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~ 258 (423)
T PRK14853 194 LAL--------FWLLVQK-----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLA 258 (423)
T ss_pred HHH--------HHHHHHc-----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHH
Confidence 111 1233332 134455555553 355678899999999999999999994 2 235
Q ss_pred hHHHHHHHHHHHHhHHHHH-HHHhhccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChH
Q 043953 338 INIMERTEEFISGVWLPSF-IVVSGLRTNF-LELFSKTKLFYLLLTTIVATSAKILSTVLVALCY----------GMPVR 405 (868)
Q Consensus 338 ~~l~~~l~~~~~~l~~plf-Fv~~Gl~~dl-~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~----------~~~~~ 405 (868)
+++++++++++..+++|+| |+.+|.++|. ..+.+...-.....+++..+++|.+|.+..++.. +++|+
T Consensus 259 ~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~ 338 (423)
T PRK14853 259 EHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWI 338 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHH
Confidence 7899999999999999999 9999999986 4342211112566788889999999998887764 46899
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhccc-cccCchHHHHHHHHHHHHHHHhHHH
Q 043953 406 DGVALGGLMNTKGVMALIVLNEGRS-LKAIDNILMAAMVFMLLLMTGLVGP 455 (868)
Q Consensus 406 e~~~lg~~m~~rG~v~lil~~~~~~-~~ii~~~~~~~lv~~~lv~t~i~~p 455 (868)
+-..+|++-+.-=++++.+++.+++ .....++.-..+.+.+++ +.+.+.
T Consensus 339 ~l~gv~~L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~-s~~~G~ 388 (423)
T PRK14853 339 DVFGVALLAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLI-AALLAS 388 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHH
Confidence 9999988744444688888898884 232233333344444444 334443
No 19
>PRK11175 universal stress protein UspE; Provisional
Probab=99.69 E-value=1.2e-15 Score=167.80 Aligned_cols=285 Identities=16% Similarity=0.116 Sum_probs=167.5
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHH-HHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIIN-AFRH 563 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-af~~ 563 (868)
|||+|++..+.....++.+..++...+ .+++++|+++-.....+....... .+ ...+ +..+..++.++ ..+.
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~-~~--~~~~--~~~~~~~~~l~~~~~~ 77 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQRNG--GKITAFLPIYDFSYEMTTLLSPDE-RE--AMRQ--GVISQRTAWIREQAKP 77 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHhcC--CCEEEEEeccCchhhhhcccchhH-HH--HHHH--HHHHHHHHHHHHHHHH
Confidence 699999999999999988888876544 356889987533221110000000 00 0000 00011122222 2222
Q ss_pred HHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecC
Q 043953 564 YQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDR 643 (868)
Q Consensus 564 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 643 (868)
+.. .+++++...... .+.+++|++.|+++++||||+|+|++....+.+-+ ...+++++++||||.++.++
T Consensus 78 ~~~--~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~g------s~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 78 YLD--AGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFT------PTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred Hhh--cCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccC------hhHHHHHhcCCCCEEEeccc
Confidence 322 356666644432 58899999999999999999999987654444333 33489999999999887543
Q ss_pred CCCCccccccccccccCccceEEEeeccCcch-------HHHHHHHHHhhcCC-CeEEEEEEeeecCCCCCCcccccCCC
Q 043953 644 GIGSAVITSAQSSLHGRQGLKLCMLFIGGPDD-------REALFYAWRMAGKP-GVNLTVVRYVYNKDGESGILVEDLNN 715 (868)
Q Consensus 644 g~~~~~~~~~~~~~~~~~~~~I~v~f~GG~dd-------reAL~~A~rma~~~-~v~ltvl~~~~~~~~~~~~~~~~~~~ 715 (868)
... . .++|+++..|++++ ..|+.+|.++|+.. +++++++|+.+........ .....
T Consensus 148 ~~~---------~-----~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~--~~~~~ 211 (305)
T PRK11175 148 DWP---------E-----GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAI--ELPEF 211 (305)
T ss_pred ccC---------C-----CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccc--ccccc
Confidence 111 1 46899999998653 67999999999887 9999999997543110000 00000
Q ss_pred CCcccccccccchhhhhhHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccC
Q 043953 716 TEDEDLVDTARDVKEKELDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMG 793 (868)
Q Consensus 716 ~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~g 793 (868)
..++ . .+..++.-++.++++.++.... ..+..+..|.. .+.|.+. +.+.||+|+|.+++ ++
T Consensus 212 ~~~~-~-----~~~~~~~~~~~l~~~~~~~~~~----~~~~~v~~G~~-~~~I~~~a~~~~~DLIVmG~~~~------~~ 274 (305)
T PRK11175 212 DPSV-Y-----NDAIRGQHLLAMKALRQKFGID----EEQTHVEEGLP-EEVIPDLAEHLDAELVILGTVGR------TG 274 (305)
T ss_pred chhh-H-----HHHHHHHHHHHHHHHHHHhCCC----hhheeeccCCH-HHHHHHHHHHhCCCEEEECCCcc------CC
Confidence 0000 0 0111111223445555443211 11122333322 2223222 45799999999875 33
Q ss_pred CCCCCCCCccccchhhhccCCCCCcccEEEEec
Q 043953 794 LSGWVDNPELGPVGETLVSSNSTAHASVLVVQQ 826 (868)
Q Consensus 794 l~~w~e~~eLG~igd~las~d~~~~~SVLVvqq 826 (868)
+.+|- +|..++.++. ..+++||||..
T Consensus 275 ~~~~l----lGS~a~~v~~---~~~~pVLvv~~ 300 (305)
T PRK11175 275 LSAAF----LGNTAEHVID---HLNCDLLAIKP 300 (305)
T ss_pred Cccee----ecchHHHHHh---cCCCCEEEEcC
Confidence 33333 8999999999 78999999963
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.45 E-value=3.9e-11 Score=131.31 Aligned_cols=269 Identities=15% Similarity=0.185 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHH
Q 043953 118 LETFSSLGLTFYMFLVGLEMDVSAVK---RMEKKS---LSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAIS 191 (868)
Q Consensus 118 l~~la~lgl~~llF~~Gle~d~~~l~---~~~k~~---~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ 191 (868)
.+-+.+.-..+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=..+. ...+.....| | +
T Consensus 53 ~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n----~~~~~~~~GW------~-I 121 (373)
T TIGR00773 53 LHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFN----ANDPITREGW------A-I 121 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhhee----cCCCcccCcc------c-c
Confidence 34445555677889999999877663 333333 5567788888854433322 1111000011 1 1
Q ss_pred HhhccHHHHHHHHHhc-CcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 043953 192 LTITSFPDLARILSDV-KLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFIL 270 (868)
Q Consensus 192 ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 270 (868)
-..|+.+-..-++.=+ +..+..+...+++-|++||+.++++.++... . +.+ ..+......++.
T Consensus 122 P~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~-----~i~-------~~~L~~a~~~~~- 185 (373)
T TIGR00773 122 PAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---N-----DLS-------MAALLVAAVAIA- 185 (373)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---C-----CCC-------HHHHHHHHHHHH-
Confidence 1223332222222222 2347777889999999999999988877652 1 222 222222211111
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Cch----hhHHHHHHH
Q 043953 271 IFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GEL----AINIMERTE 345 (868)
Q Consensus 271 ~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~----~~~l~~~l~ 345 (868)
..++.+|. . +++...+..+..++. +.+ ...|+|+.+|+|++|+++|. .+. .+++++.++
T Consensus 186 ---------~l~~~~~~-~----v~~~~~y~~lgvllW-~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~ 249 (373)
T TIGR00773 186 ---------VLAVLNRC-G----VRRLGPYMLVGVILW-FAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLH 249 (373)
T ss_pred ---------HHHHHHHc-C----CchhhHHHHHHHHHH-HHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHH
Confidence 11333443 1 334444444433333 333 79999999999999999998 333 345666677
Q ss_pred HHHHHhHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHH
Q 043953 346 EFISGVWLPSF-IVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCY----------GMPVRDGVALGGLM 414 (868)
Q Consensus 346 ~~~~~l~~plf-Fv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~----------~~~~~e~~~lg~~m 414 (868)
+.+..+++|+| |+..|.++|...+... .......+++..+++|.++++..++.. +++|++-..+|++-
T Consensus 250 p~v~~lilPlFAFanAGv~l~~~~~~~~-~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~ 328 (373)
T TIGR00773 250 PWVAYLILPLFAFANAGVSLQGVSLNGL-TSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLC 328 (373)
T ss_pred HHHHHHHHHHHHHHhcCeeeecCcchhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 77889999999 9999999987554332 233477888899999999999998765 46899998888874
Q ss_pred hhhhhHHHHHHhhccc
Q 043953 415 NTKGVMALIVLNEGRS 430 (868)
Q Consensus 415 ~~rG~v~lil~~~~~~ 430 (868)
+.-=++++.+.+.+++
T Consensus 329 GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 329 GIGFTMSIFIASLAFG 344 (373)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4444678888888884
No 21
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.36 E-value=2.8e-13 Score=151.90 Aligned_cols=373 Identities=12% Similarity=0.089 Sum_probs=247.8
Q ss_pred HHHHHHHHhhcccC--CCchHHHHHHHHhhCcccccC--cCC--CCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHH
Q 043953 59 VAIRLFIILLKPLH--QPRFIPELLTSILIGPSTFGT--FES--LSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFL 132 (868)
Q Consensus 59 ~~~~l~~~l~~rl~--~P~iv~~IlaGilLGPs~Lg~--~~~--~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~ 132 (868)
.++.+...+..+++ +|.-...|+.|+++|-.+.+. ..+ -.+|+ |+-++.| -++|-
T Consensus 52 sLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~v---FFlyLLP----------------PIvlD 112 (670)
T KOG1966|consen 52 SLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLESDV---FFLYLLP----------------PIVLD 112 (670)
T ss_pred HHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccccccc---hhhhhcC----------------HHHhc
Confidence 34444444555555 788888999999998654322 111 00111 2222223 27789
Q ss_pred HhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh--hhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcCcc
Q 043953 133 VGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVP--IHEGITRESPNLGALFWAISLTITSFPDLARILSDVKLL 210 (868)
Q Consensus 133 ~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l--~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll 210 (868)
+|+-|.-+.+..|...++..|+.|.+.-.+.-.+..|.+ ...++.. ......++.|...|..++..+..+..|...
T Consensus 113 AGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEihV- 190 (670)
T KOG1966|consen 113 AGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIHV- 190 (670)
T ss_pred ccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhcc-
Confidence 999999999999999999999999888633322222222 1222211 234677889999999999999999999987
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043953 211 HTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKETKKK 290 (868)
Q Consensus 211 ~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~ 290 (868)
|.-+=-++-+++++||.+.+++.-+...+..-+.. +.... +.......+....+++++++.+...+.....|.+ .
T Consensus 191 Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~--n~~~~-d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft--~ 265 (670)
T KOG1966|consen 191 NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSD--NLTTI-DYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT--K 265 (670)
T ss_pred ccEEEeeeehhhhhcCceEEehHHHHHHHHHhccc--ceeEe-eeecceeEEEEEecCchhHHHHHHHHHHHHHHhh--c
Confidence 77677888999999999999999888877654210 11110 0011112222222233344444444455555555 2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC---Cchhh---HHHHHHHHHHHHhHHHHHHHHhhccc
Q 043953 291 AGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN---GELAI---NIMERTEEFISGVWLPSFIVVSGLRT 364 (868)
Q Consensus 291 ~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~---~~~~~---~l~~~l~~~~~~l~~plfFv~~Gl~~ 364 (868)
.++-...++++++.+.+|..+|.+++|++++-.++|+.+.. ..... .-++..--+.+..-.++.|++.|..+
T Consensus 266 --~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~ 343 (670)
T KOG1966|consen 266 --HVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVST 343 (670)
T ss_pred --ceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhh
Confidence 24556778999999999999999999999999999999986 33332 33333334456777888999999886
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHhhhhhHHHHHHhhccccc-----c
Q 043953 365 NFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCY------GMPVRDGVALGGLMNTKGVMALIVLNEGRSLK-----A 433 (868)
Q Consensus 365 dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~------~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~-----i 433 (868)
--. ...++|..+.+-++...+.|.+++...+++. +++..|-+.++.+ +.||.+++.+....-... .
T Consensus 344 v~~--~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~ 420 (670)
T KOG1966|consen 344 VSS--NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNM 420 (670)
T ss_pred cCC--cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccc
Confidence 432 3334666677777778888999988888776 4688898999887 889998887654433222 2
Q ss_pred CchHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 043953 434 IDNILMAAMVFMLLLMTGLVGPIFFLANK 462 (868)
Q Consensus 434 i~~~~~~~lv~~~lv~t~i~~plv~~l~~ 462 (868)
.-..++.++.+++.+..+..-|+++|+--
T Consensus 421 Fvttti~VIfFTVflQGiTIkplvk~L~V 449 (670)
T KOG1966|consen 421 FVTTTIAVIFFTVFLQGITIKPLVKFLKV 449 (670)
T ss_pred eEeeeeEEEeeeeeecccchHHHHHHHcc
Confidence 22344555556677777778899999764
No 22
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.23 E-value=8.9e-11 Score=111.85 Aligned_cols=131 Identities=15% Similarity=0.319 Sum_probs=98.4
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRHY 564 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 564 (868)
|||+|++++++...+++.+..++... +.+++++|+++......+ +.. . . ..+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~--~~~v~ll~v~~~~~~~~~----~~~---~---~----~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQ--NGEIIPLNVIEVPNHSSP----SQL---E---V----NVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcC--CCeEEEEEEEecCCCCCc----chh---H---H----HHHHHHHHHHHHHHH
Confidence 69999999999999999999999764 457899999987654322 100 0 0 122345666666666
Q ss_pred HhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 565 QDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 565 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
... .++.+++....+ .+..++||+.|++.++|+|+||+|+++...+.+ +++++++|++++||||+|+
T Consensus 65 ~~~-~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~------lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 65 AAS-LGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRL------FGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhh-cCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcccee------cCchHHHHHhcCCCCEEEe
Confidence 555 466777777665 579999999999999999999999987654433 4445699999999999876
No 23
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.13 E-value=1.3e-08 Score=113.37 Aligned_cols=292 Identities=14% Similarity=0.145 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHH
Q 043953 117 LLETFSSLGLTFYMFLVGLEMDVSAVK---RMEKKS---LSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAI 190 (868)
Q Consensus 117 ~l~~la~lgl~~llF~~Gle~d~~~l~---~~~k~~---~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~ 190 (868)
..+-+.+.-..+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=.+ +.... +... -+|
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~----~n~~~-~~~~------GWg- 135 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFF----LNADT-PSQH------GFG- 135 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhh----eecCC-CccC------ccc-
Confidence 334455566677899999999877663 233333 55677888888544333 22111 1111 111
Q ss_pred HHhhccHHHHHHHHHhc-CcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHH
Q 043953 191 SLTITSFPDLARILSDV-KLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFI 269 (868)
Q Consensus 191 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 269 (868)
+-..|+.+...-++.=+ +..+..+...+++-|++||+.++++.+++.. . +.+ ..+..+..+++.
T Consensus 136 IPmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~-----~i~-------~~~L~~a~~~~~ 200 (438)
T PRK14856 136 IPMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---T-----NLK-------FAWLLGALGVVL 200 (438)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---C-----CCc-------HHHHHHHHHHHH
Confidence 12233433333333322 2246678888999999999999988877652 1 222 233322222111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Cch------------
Q 043953 270 LIFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GEL------------ 336 (868)
Q Consensus 270 ~~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~------------ 336 (868)
+ .++.+|. . ++....++++..++.. ....-|+|+.++..++|+++|. ++.
T Consensus 201 --~--------l~~ln~~-~----v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~ 263 (438)
T PRK14856 201 --V--------LAVLNRL-N----VRSLIPYLLLGVLLWF--CVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGK 263 (438)
T ss_pred --H--------HHHHHHc-C----CccccHHHHHHHHHHH--HHHHccCcHHHHHHHHHheeecccccccchhhhhhhhh
Confidence 1 1233433 1 2334455555444443 3347899999999999999997 322
Q ss_pred --------------------------------hhHHHHHHHHHHHHhHHHHH-HHHhhcccccccccchhhHHHHHHHHH
Q 043953 337 --------------------------------AINIMERTEEFISGVWLPSF-IVVSGLRTNFLELFSKTKLFYLLLTTI 383 (868)
Q Consensus 337 --------------------------------~~~l~~~l~~~~~~l~~plf-Fv~~Gl~~dl~~l~~~~~~~~~~~ii~ 383 (868)
.+++++.+.+.+..+.+|+| |+-.|..++...... .-.....+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~ 341 (438)
T PRK14856 264 RYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVIL 341 (438)
T ss_pred hhhccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHH
Confidence 13466677788889999999 899999997542211 1234556777
Q ss_pred HHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhhhhHHHHHHhhcccc--ccCchHHHHHHHHHHHHHHH
Q 043953 384 VATSAKILSTVLVALCY----------GMPVRDGVALGGLMNTKGVMALIVLNEGRSL--KAIDNILMAAMVFMLLLMTG 451 (868)
Q Consensus 384 ~~~~~K~l~~~l~~~~~----------~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~--~ii~~~~~~~lv~~~lv~t~ 451 (868)
..++||.+|++..++.. +++|++-.-+|.+-+.-=++++.+++.+++. ....++.-..+.+.+++ +.
T Consensus 342 GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~l-sa 420 (438)
T PRK14856 342 GLCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLI-SG 420 (438)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH-HH
Confidence 88899999999888764 4689998888887444445788888888843 32333344444444444 33
Q ss_pred hHHH
Q 043953 452 LVGP 455 (868)
Q Consensus 452 i~~p 455 (868)
+.+.
T Consensus 421 i~G~ 424 (438)
T PRK14856 421 IIGA 424 (438)
T ss_pred HHHH
Confidence 3443
No 24
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.05 E-value=7.3e-08 Score=105.94 Aligned_cols=269 Identities=16% Similarity=0.155 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHH
Q 043953 118 LETFSSLGLTFYMFLVGLEMDVSAVK---RMEKKS---LSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAIS 191 (868)
Q Consensus 118 l~~la~lgl~~llF~~Gle~d~~~l~---~~~k~~---~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ 191 (868)
.+-+.+.-..+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=+++. ...+.....| | +
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n----~g~~~~~~GW------g-I 128 (389)
T PRK09560 60 LHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFN----YNNPETLRGW------A-I 128 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheee----cCCCcccCcc------c-c
Confidence 34445555677889999999877663 233333 5567788888855433322 1100000011 1 1
Q ss_pred HhhccHHHHHHHHHhc-CcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 043953 192 LTITSFPDLARILSDV-KLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFIL 270 (868)
Q Consensus 192 ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 270 (868)
-..|+.+-...+++=+ +..+..+...+++-|++||+.++++.++... . +.+ ..+......++.
T Consensus 129 PmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~-----~i~-------~~~L~~a~~~~~- 192 (389)
T PRK09560 129 PAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---S-----DLS-------LPALALAAIAIA- 192 (389)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---C-----CCC-------HHHHHHHHHHHH-
Confidence 1223333333333322 2246777888999999999999988877652 1 222 222222221111
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Cch------hhHHHHH
Q 043953 271 IFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GEL------AINIMER 343 (868)
Q Consensus 271 ~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~------~~~l~~~ 343 (868)
+ .++.+|. . ++....++.+..++..+ -..-|+|+.++..++|+++|. .+. .++++++
T Consensus 193 -~--------l~~ln~~-~----v~~~~~Y~~~G~~lW~~--~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~ 256 (389)
T PRK09560 193 -V--------LFLLNRL-G----VTKLTPYLIVGAILWFA--VLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHA 256 (389)
T ss_pred -H--------HHHHHHc-C----CccchHHHHHHHHHHHH--HHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHH
Confidence 1 1223333 1 23445555555444433 347899999999999999997 221 3578889
Q ss_pred HHHHHHHhHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHH
Q 043953 344 TEEFISGVWLPSF-IVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCY----------GMPVRDGVALGG 412 (868)
Q Consensus 344 l~~~~~~l~~plf-Fv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~----------~~~~~e~~~lg~ 412 (868)
+++.+..+.+|+| |...|..++-..+... .-.....+++..+++|.+|.++.++.. +++|++-..+|.
T Consensus 257 L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~-~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~ 335 (389)
T PRK09560 257 LHPWVAFAILPLFAFANAGVSLAGISLSSL-TSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV 335 (389)
T ss_pred hhhhhhhhhHHHHHhhcCCeeecCCcHHhc-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 9999988999999 8889988843222221 122455677788899999999888764 468999888888
Q ss_pred HHhhhhhHHHHHHhhccc
Q 043953 413 LMNTKGVMALIVLNEGRS 430 (868)
Q Consensus 413 ~m~~rG~v~lil~~~~~~ 430 (868)
+-+.-=++++.+++.+..
T Consensus 336 L~GIGFTmSLFIa~LAF~ 353 (389)
T PRK09560 336 LCGIGFTMSLFIGSLAFG 353 (389)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 744444678888888883
No 25
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.00 E-value=1.3e-07 Score=103.81 Aligned_cols=269 Identities=16% Similarity=0.155 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHH
Q 043953 118 LETFSSLGLTFYMFLVGLEMDVSAVK---RMEKKS---LSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAIS 191 (868)
Q Consensus 118 l~~la~lgl~~llF~~Gle~d~~~l~---~~~k~~---~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ 191 (868)
.+-+.+.-..+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=.+ +....+.....| | +
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~----~n~~~~~~~~GW------a-I 128 (388)
T PRK09561 60 LLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLL----FNYADPVTREGW------A-I 128 (388)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhh----eecCCCcccCcc------c-c
Confidence 34445555667889999999877663 333333 55677888888544333 221110000011 1 1
Q ss_pred HhhccHHHHHHHHHhc-CcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 043953 192 LTITSFPDLARILSDV-KLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFIL 270 (868)
Q Consensus 192 ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 270 (868)
-..|+.+-..-++.=+ +..+..+...+++-|++||+.++++.++... . +.+ ..+..+...++
T Consensus 129 P~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~-----~i~-------~~~L~~a~~~~-- 191 (388)
T PRK09561 129 PAATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---S-----DLS-------MVSLGVAAVAI-- 191 (388)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---C-----Ccc-------HHHHHHHHHHH--
Confidence 1223333333333222 2247777888999999999999988877652 1 222 22222221111
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Cch----hhHHHHHHH
Q 043953 271 IFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GEL----AINIMERTE 345 (868)
Q Consensus 271 ~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~----~~~l~~~l~ 345 (868)
.+ .++.+|. .++....++++..++.. ....-|+|+.++..+.|+.+|. .+. -++++++++
T Consensus 192 ~~--------l~~ln~~-----~v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~ 256 (388)
T PRK09561 192 AV--------LAVLNLC-----GVRRTSVYILVGVVLWV--AVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLH 256 (388)
T ss_pred HH--------HHHHHHc-----CCccchHHHHHHHHHHH--HHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhh
Confidence 11 1233333 12344455555544443 3347899999999999999997 221 367889999
Q ss_pred HHHHHhHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHH
Q 043953 346 EFISGVWLPSF-IVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCY----------GMPVRDGVALGGLM 414 (868)
Q Consensus 346 ~~~~~l~~plf-Fv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~----------~~~~~e~~~lg~~m 414 (868)
+.+..+.+|+| |+-.|..++-..+... .-.....+++..+++|.+|.+..++.. +++|++-..+|.+-
T Consensus 257 p~v~~~IlPlFAfaNAGV~l~~~~~~~~-~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~ 335 (388)
T PRK09561 257 PWVAFLILPLFAFANAGVSLQGVTLDGL-TSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLC 335 (388)
T ss_pred hhhhheeHHHHHhhcCCeeeccCcHHhh-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999 8888988832222211 112455677788899999999888764 46899988888874
Q ss_pred hhhhhHHHHHHhhccc
Q 043953 415 NTKGVMALIVLNEGRS 430 (868)
Q Consensus 415 ~~rG~v~lil~~~~~~ 430 (868)
+.-=++++.+++.+++
T Consensus 336 GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 336 GIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4444578888888885
No 26
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.98 E-value=1e-07 Score=105.85 Aligned_cols=282 Identities=16% Similarity=0.150 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHH
Q 043953 118 LETFSSLGLTFYMFLVGLEMDVSAVK---RMEKKS---LSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAIS 191 (868)
Q Consensus 118 l~~la~lgl~~llF~~Gle~d~~~l~---~~~k~~---~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ 191 (868)
.+-+.+--..+|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++=.+ +.... +.. --+| +
T Consensus 64 ~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~----~n~~~-~~~------~GWg-I 131 (423)
T PRK14855 64 EHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTA----LNAGG-PGA------SGWG-V 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHhe----eecCC-Ccc------Cccc-c
Confidence 33445555667889999999877663 333333 45677788888544332 22111 111 1111 2
Q ss_pred HhhccHHHHHHHHHhcC-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 043953 192 LTITSFPDLARILSDVK-LLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFIL 270 (868)
Q Consensus 192 ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 270 (868)
-..|+.+....+++=+| ..+..+...+++-|++||+.++++.+++.. . +.+ ..+..+..+++.
T Consensus 132 PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~-----~i~-------~~~L~~a~~~~~- 195 (423)
T PRK14855 132 PMATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---S-----GLN-------LLALLLAALTWA- 195 (423)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---C-----CCC-------HHHHHHHHHHHH-
Confidence 22344433333333232 246677888999999999999988877652 1 222 222222211111
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-c-h------------
Q 043953 271 IFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNG-E-L------------ 336 (868)
Q Consensus 271 ~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~-~-~------------ 336 (868)
..++.+|. .++....++.+..++.. .-..-|+|+.++..+.|+++|.. + .
T Consensus 196 ---------~l~~ln~~-----~v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~ 259 (423)
T PRK14855 196 ---------LALLAGRL-----GVTSLKIYAVLGALLWF--FVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAA 259 (423)
T ss_pred ---------HHHHHHHc-----CCccccHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhh
Confidence 11233333 13334455555444443 33478999999999999999862 1 1
Q ss_pred ------------------------hhHHHHHHHHHHHHhHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHH
Q 043953 337 ------------------------AINIMERTEEFISGVWLPSF-IVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKIL 391 (868)
Q Consensus 337 ------------------------~~~l~~~l~~~~~~l~~plf-Fv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l 391 (868)
.+++++.+++.+..+.+|+| |+-.|..++-.. .. .....+++..+++|.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~l 334 (423)
T PRK14855 260 PGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPL 334 (423)
T ss_pred cccchhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchH
Confidence 24577788888888999999 888998885332 22 2455677788899999
Q ss_pred HHHHHHHHh----------CCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHHHHHHHHH
Q 043953 392 STVLVALCY----------GMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAAMVFMLLL 448 (868)
Q Consensus 392 ~~~l~~~~~----------~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv 448 (868)
|+++.++.. +++|++-..+|++-+.-=++++.+++.+++....-++.-..+.+.+++
T Consensus 335 GI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~ 401 (423)
T PRK14855 335 GVVGGAWLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVL 401 (423)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHH
Confidence 999888764 468999988888744444678888888885332333333333344444
No 27
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.96 E-value=3.5e-07 Score=100.17 Aligned_cols=269 Identities=16% Similarity=0.132 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHH
Q 043953 119 ETFSSLGLTFYMFLVGLEMDVSAVK---RMEKKS---LSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISL 192 (868)
Q Consensus 119 ~~la~lgl~~llF~~Gle~d~~~l~---~~~k~~---~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l 192 (868)
+-+.+.-..+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=..+.. +.....+| | +-
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~~~~GW---------~-IP 125 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIKVINGW---------A-IP 125 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCcccCcc---------c-cc
Confidence 3344555667889999999876653 333333 55677888888655444322 11100111 1 11
Q ss_pred hhccHHHHHHHHHhc-CcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 043953 193 TITSFPDLARILSDV-KLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILI 271 (868)
Q Consensus 193 s~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 271 (868)
..|+.+-...++.=+ +..+..+.-.+++-|++||+.++++.++... + +.+ ..+...... +..
T Consensus 126 ~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~-----~i~-------~~~L~~A~~--~~~ 188 (383)
T PRK14854 126 SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---K-----SLS-------LLSLSLGTL--FIL 188 (383)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---C-----Ccc-------HHHHHHHHH--HHH
Confidence 223332222222222 2247777788888899999999988877652 1 222 122211111 111
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-C-ch---hhHHHHHHHH
Q 043953 272 FWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-G-EL---AINIMERTEE 346 (868)
Q Consensus 272 ~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~-~~---~~~l~~~l~~ 346 (868)
+.+ .+.|+. .++....++++..++. +....-|+|+.++..+.|+++|. . +. .+++++++++
T Consensus 189 ~l~-------~~nr~~-----~v~~~~~Y~~~G~~lW--~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p 254 (383)
T PRK14854 189 AMI-------ICNRIF-----KINRSSVYVVLGFFAW--FCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHP 254 (383)
T ss_pred HHH-------HHHHhc-----CCceehHHHHHHHHHH--HHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhc
Confidence 111 122221 1233444544444443 23347899999999999999997 2 11 3578888999
Q ss_pred HHHHhHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHh
Q 043953 347 FISGVWLPSF-IVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCY----------GMPVRDGVALGGLMN 415 (868)
Q Consensus 347 ~~~~l~~plf-Fv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~----------~~~~~e~~~lg~~m~ 415 (868)
.+..+.+|+| |+..|..++-..+... .......+++..+++|.+|.+..++.. +++|++-..+|++-+
T Consensus 255 ~v~~~IlPlFA~aNAGV~l~~~~~~~~-~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~G 333 (383)
T PRK14854 255 WIIYFILPVFAFANAGISFSGISFSIL-FEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCG 333 (383)
T ss_pred hHHHhhHHHHHhhcCCeeeccCcHHhh-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999 8889988842222211 123455677788899999999888764 468999998888744
Q ss_pred hhhhHHHHHHhhcccc
Q 043953 416 TKGVMALIVLNEGRSL 431 (868)
Q Consensus 416 ~rG~v~lil~~~~~~~ 431 (868)
.-=++++.+++.+.+.
T Consensus 334 IGFTmSLFIa~LAF~~ 349 (383)
T PRK14854 334 IGFTMSLFIGVLAFND 349 (383)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 4446888888888853
No 28
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.76 E-value=1.8e-06 Score=91.05 Aligned_cols=258 Identities=14% Similarity=0.145 Sum_probs=159.3
Q ss_pred HHHHHHHhhccChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHH
Q 043953 127 TFYMFLVGLEMDVSAVK---RMEKKS---LSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDL 200 (868)
Q Consensus 127 ~~llF~~Gle~d~~~l~---~~~k~~---~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv 200 (868)
.+|.+.+|+|+..+.+. ++++++ ..-++.|++.|.++ +..+....+.....| ++-+.|+.+..
T Consensus 72 AvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~~GW-------aIP~ATDiAFA 140 (390)
T COG3004 72 AVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATLEGW-------AIPMATDIAFA 140 (390)
T ss_pred HHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhhcCc-------CcccHHHHHHH
Confidence 34667899999988774 334443 34556667777432 222222211000001 12233444444
Q ss_pred HHHHHhc-CcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 201 ARILSDV-KLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPC 279 (868)
Q Consensus 201 ~~iL~el-~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~ 279 (868)
..+++=+ +..++.+.-.+++-+++||+-++++.++... . +.+ ..+.....+ .+...
T Consensus 141 lGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~-----~Ls-------~~al~~a~~--~i~vL------ 197 (390)
T COG3004 141 LGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---T-----DLS-------MAALGIAAL--AIAVL------ 197 (390)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---C-----Ccc-------HHHHHHHHH--HHHHH------
Confidence 4443333 3457788888999999999999988777652 2 222 111111111 11111
Q ss_pred HHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Cc----hhhHHHHHHHHHHHHhHHH
Q 043953 280 IAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GE----LAINIMERTEEFISGVWLP 354 (868)
Q Consensus 280 ~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~----~~~~l~~~l~~~~~~l~~p 354 (868)
..++|. .++....++++..++..+.+ .-|+|..++..+.|+.+|- .+ .-+++++.+.+.+..+.+|
T Consensus 198 --~~lN~~-----~v~~l~~Y~~~gviLW~~vl--kSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlP 268 (390)
T COG3004 198 --AVLNRL-----GVRRLSPYLLVGVILWIAVL--KSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILP 268 (390)
T ss_pred --HHHHHh-----CchhhhHHHHHHHHHHHHHH--HhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHH
Confidence 112222 12233455555555554443 6799999999999999996 32 3467788888889999999
Q ss_pred HH-HHHhhcccc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhhhhH
Q 043953 355 SF-IVVSGLRTN---FLELFSKTKLFYLLLTTIVATSAKILSTVLVALCY----------GMPVRDGVALGGLMNTKGVM 420 (868)
Q Consensus 355 lf-Fv~~Gl~~d---l~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~----------~~~~~e~~~lg~~m~~rG~v 420 (868)
+| |.-.|..++ ...+.+ .+.+.+++..+++|.++++..++.. +.+|++-...+++-+.-=++
T Consensus 269 lFaFaNAGvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTM 344 (390)
T COG3004 269 LFAFANAGVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTM 344 (390)
T ss_pred HHHHccCCccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHH
Confidence 99 899998877 444333 3456677888999999999888764 46899988888875544467
Q ss_pred HHHHHhhcccc
Q 043953 421 ALIVLNEGRSL 431 (868)
Q Consensus 421 ~lil~~~~~~~ 431 (868)
++.+...+++.
T Consensus 345 SlFI~~LAf~~ 355 (390)
T COG3004 345 SLFIASLAFGS 355 (390)
T ss_pred HHHHHHHhcCC
Confidence 88888887765
No 29
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.75 E-value=7.6e-08 Score=105.64 Aligned_cols=286 Identities=19% Similarity=0.200 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHH---hhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHH
Q 043953 117 LLETFSSLGLTFYMFLVGLEMDVSAVK---RMEKK---SLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAI 190 (868)
Q Consensus 117 ~l~~la~lgl~~llF~~Gle~d~~~l~---~~~k~---~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~ 190 (868)
..+-+.+.-..+|.|.+|+|+..+.+. ++.|+ ...-++.|+++|.++=. .+.... + ...--+|
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl----~~n~~~-~-----~~~~GW~- 123 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYL----AFNAGG-P-----EAAHGWA- 123 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GG--SS-T-----THHHHTS-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHh----eeecCC-C-----CcCceEE-
Confidence 444555666677889999999877663 23333 34566777777744322 222111 0 0111111
Q ss_pred HHhhccHHHHHHHHHhc-CcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHH
Q 043953 191 SLTITSFPDLARILSDV-KLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFI 269 (868)
Q Consensus 191 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 269 (868)
+-..|+.+....++.=+ +..+..+...+++-|++||+.++++.+++.. . +.+ ..+.....+ ..
T Consensus 124 IP~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~-----~i~-------~~~L~~a~~-~~ 187 (378)
T PF06965_consen 124 IPMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---D-----GIS-------LLWLLLAAA-AL 187 (378)
T ss_dssp SSS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------------------HHHHHHHHH-HH
T ss_pred ecccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---C-----CCC-------HHHHHHHHH-HH
Confidence 22334444444444333 2246677889999999999999988887752 1 121 222222211 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Cch--------hhHH
Q 043953 270 LIFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GEL--------AINI 340 (868)
Q Consensus 270 ~~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~--------~~~l 340 (868)
++ .+..+|. . ++....+..+..++. +....-|+|+.++..+.|+.+|. ++. -+++
T Consensus 188 ~~---------l~~l~r~-~----v~~~~~Y~~~G~~lW--~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rl 251 (378)
T PF06965_consen 188 LL---------LFVLNRL-G----VRSLWPYLLLGILLW--YAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERL 251 (378)
T ss_dssp HH---------HHHHHHT-T-------THHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHH
T ss_pred HH---------HHHHHHC-C----CceehHHHHHHHHHH--HHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHH
Confidence 11 1233443 1 223344444433322 23357899999999999999998 333 2478
Q ss_pred HHHHHHHHHHhHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHH
Q 043953 341 MERTEEFISGVWLPSF-IVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCY----------GMPVRDGVA 409 (868)
Q Consensus 341 ~~~l~~~~~~l~~plf-Fv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~----------~~~~~e~~~ 409 (868)
++.+++.+..+.+|+| |+..|..++-..+... .-.....+++..+++|.++.+..++.. +++|++-..
T Consensus 252 e~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~g 330 (378)
T PF06965_consen 252 EHALHPWVAFVILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYG 330 (378)
T ss_dssp HHHHHHHHHHTHHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTT
T ss_pred HHHhhhhhhhhhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 8889999999999999 8999999886554432 223345677788899999998887654 367888777
Q ss_pred HHHHHhhhhhHHHHHHhhccccccCchHHHHHHHHHH
Q 043953 410 LGGLMNTKGVMALIVLNEGRSLKAIDNILMAAMVFML 446 (868)
Q Consensus 410 lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~ 446 (868)
+|.+-+.-=++++.+++.+++.....++.-..+.+.+
T Consensus 331 v~~LaGIGFTmSLFIa~LAF~~~~~~~~aK~gIL~~S 367 (378)
T PF06965_consen 331 VGLLAGIGFTMSLFIAGLAFDDPALQNAAKLGILIGS 367 (378)
T ss_dssp HHHHTT--HHHHHHHHHHHSTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhHHHHHHHHHH
Confidence 8876444445888888988887544444444443333
No 30
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.70 E-value=2.7e-07 Score=89.78 Aligned_cols=140 Identities=12% Similarity=0.205 Sum_probs=88.6
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhh-hhhhccccCCCccchhhhccchHHHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAML-IVHDAFRTKTSDQNSIRELADSDLIINAFRH 563 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 563 (868)
.||+|++..++....++.+..++...+ ..++++|+++......... ..... ....+ +..+..++.++.+..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~--~~l~ll~v~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~l~~~~~ 72 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKG--QTIVLVHVHPPITSIPSSSGKLEVA----SAYKQ--EEDKEAKELLLPYRC 72 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCC--CcEEEEEeccCcccCCCCccchHHH----HHHHH--HHHHHHHHHHHHHHH
Confidence 489999999999999999998876544 4669999987543211000 00000 00000 011223334443333
Q ss_pred HHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCC--cceEEE
Q 043953 564 YQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAP--CSIGIL 640 (868)
Q Consensus 564 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~Ap--CsVgIl 640 (868)
..+. .++.++...... .+..+.|++.|++.++|+|+||-|++......+.++ .+-++|+++|| |||.|.
T Consensus 73 ~~~~-~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gs-----sva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 73 FCSR-KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKS-----DVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred HHhh-cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCC-----chhHHHHhcCCCCceEEEE
Confidence 2222 356666555443 478999999999999999999999987655444322 13489999999 999765
No 31
>PRK15456 universal stress protein UspG; Provisional
Probab=98.68 E-value=2e-07 Score=90.42 Aligned_cols=134 Identities=11% Similarity=0.108 Sum_probs=83.7
Q ss_pred eEEEeecCCC--ChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHH
Q 043953 485 RILTCIHSVG--NLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFR 562 (868)
Q Consensus 485 riLv~v~~~~--~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 562 (868)
|||+|++.++ +....++.+..++.. . -.++++|+++...... . .... .+...+. ....++..+.++
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la~~-~--~~l~llhv~~~~~~~~-~--~~~~-~~~~~~~-----~~~~~~~~~~l~ 71 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLAQD-D--GVIHLLHVLPGSASLS-L--HRFA-ADVRRFE-----EHLQHEAEERLQ 71 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHHhc-C--CeEEEEEEecCccccc-c--cccc-cchhhHH-----HHHHHHHHHHHH
Confidence 7999999974 778888888887753 2 2689999987542210 0 0000 0000000 001122222233
Q ss_pred HHHhhC--CCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 563 HYQDRN--DDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 563 ~~~~~~--~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
.+.+.. ..+.+++..... +..++|++.|++.++||||||.|++. ..+.+.++.. ++|++++||||.|.
T Consensus 72 ~~~~~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a------~~v~~~a~~pVLvV 141 (142)
T PRK15456 72 TMVSHFTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNA------SSVIRHANLPVLVV 141 (142)
T ss_pred HHHHHhCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccH------HHHHHcCCCCEEEe
Confidence 333221 355666665554 88999999999999999999999864 4444444444 89999999999875
No 32
>PRK15005 universal stress protein F; Provisional
Probab=98.65 E-value=2.5e-07 Score=89.74 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=80.8
Q ss_pred eEEEeecCCCC--hhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHH
Q 043953 485 RILTCIHSVGN--LSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFR 562 (868)
Q Consensus 485 riLv~v~~~~~--~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 562 (868)
+||+|++++++ ....++.+..++...+ ..++++|+++............. ....+. ....++..+.++
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~~~~--~~l~ll~v~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~l~ 73 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAKIDD--AEVHFLTVIPSLPYYASLGLAYS-----AELPAM---DDLKAEAKSQLE 73 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHhccC--CeEEEEEEEccCccccccccccc-----ccchHH---HHHHHHHHHHHH
Confidence 69999999887 3567777777665443 46799999975332111000000 000000 001111222333
Q ss_pred HHHhhC--CCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 563 HYQDRN--DDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 563 ~~~~~~--~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
++.+.. ..+.++..... .+..+.|++.|++.++|+|+||.|+ ....+.+.++ +..+|++++||||.|.
T Consensus 74 ~~~~~~~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS------~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 74 EIIKKFKLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHR-PDITTYLLGS------NAAAVVRHAECSVLVV 143 (144)
T ss_pred HHHHHhCCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecc------hHHHHHHhCCCCEEEe
Confidence 333221 34455555443 4789999999999999999999884 3344433333 3489999999999875
No 33
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.64 E-value=1.8e-07 Score=88.27 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=85.6
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRHY 564 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 564 (868)
|||+|+++++....+++.+..++...+. .++++|+++-... + ..+..++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~--~l~ll~v~~~~~~--~-------------------~~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKA--PWYVVYVETPRLN--R-------------------LSEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCC--CEEEEEEecCccc--c-------------------CCHHHHHHHHHHHHH
Confidence 6899999999999999999988866544 5699999763211 0 001123445555554
Q ss_pred HhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccC-CcceEEE
Q 043953 565 QDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKA-PCSIGIL 640 (868)
Q Consensus 565 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~A-pCsVgIl 640 (868)
.++ .++. ..+..+ .+..+.|++.+++.++|+|+||+|++......+ ++++.++|+++| ||+|.|.
T Consensus 58 ~~~-~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~------~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 58 AEE-LGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELF------RGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHH-cCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHh------cccHHHHHHHhCCCCeEEEe
Confidence 443 2333 333334 578999999999999999999999886654433 334459999999 9999774
No 34
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.58 E-value=5.6e-07 Score=87.53 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=85.7
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHHHh
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEFRF 743 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~ 743 (868)
+|++++.|++..+.|+.+|.+++..++.+++++|++++....... .... +. .. ...++.++..++.++++..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~---~~~~--~~--~~-~~~~~~~~~~~~~l~~~~~ 72 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSS---SGKL--EV--AS-AYKQEEDKEAKELLLPYRC 72 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCC---ccch--HH--HH-HHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999998653221100 0000 00 00 0001222334556666654
Q ss_pred hcCCCCceEEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccc-cchhhhccCCCCCc--c
Q 043953 744 KTMYDSSITYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELG-PVGETLVSSNSTAH--A 819 (868)
Q Consensus 744 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG-~igd~las~d~~~~--~ 819 (868)
.... ..+.+...++..+.....+++.. +.+.||+|+|++++ .|+..+ -+| .+.+.++. .++ |
T Consensus 73 ~~~~-~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~------~~l~~~----~~gssva~~Vi~---~a~~~c 138 (146)
T cd01989 73 FCSR-KGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD------NHFSMK----FKKSDVASSVLK---EAPDFC 138 (146)
T ss_pred HHhh-cCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC------Cceeec----ccCCchhHHHHh---cCCCCc
Confidence 4322 23444444443322222233321 34589999999975 233222 266 69999999 677 9
Q ss_pred cEEEEec
Q 043953 820 SVLVVQQ 826 (868)
Q Consensus 820 SVLVvqq 826 (868)
+||||+.
T Consensus 139 ~Vlvv~~ 145 (146)
T cd01989 139 TVYVVSK 145 (146)
T ss_pred eEEEEeC
Confidence 9999985
No 35
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.56 E-value=2.4e-07 Score=87.87 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=86.6
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRH 563 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 563 (868)
-|||+|+++.++...+++.+..++... ...++++|+++.............. . .... ..........+ ..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~--~~~i~~l~v~~~~~~~~~~~~~~~~---~--~~~~--~~~~~~~~~~~-~~ 72 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRS--GAEITLLHVIPPPPQYSFSAAEDEE---S--EEEA--EEEEQARQAEA-EE 72 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEESCHCHHHHHHHHHH---H--HHHH--HHHHHHHHHHH-HH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhh--CCeEEEEEeeccccccccccccccc---c--cccc--chhhhhhhHHH-HH
Confidence 379999999999999988888877553 3577999999877654322111110 0 0000 00000000000 11
Q ss_pred HHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 564 YQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 564 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
.... ........ ..+ .+..++|++.+++.++|+||+|.|++....+.+ ++++.+++++++||||.|+
T Consensus 73 ~~~~-~~~~~~~~-~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 73 AEAE-GGIVIEVV-IES--GDVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHH-TTSEEEEE-EEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred Hhhh-ccceeEEE-EEe--eccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence 1111 23333333 333 589999999999999999999999865555433 5666799999999999875
No 36
>PRK09982 universal stress protein UspD; Provisional
Probab=98.52 E-value=3.5e-07 Score=88.90 Aligned_cols=133 Identities=9% Similarity=0.006 Sum_probs=80.8
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRHY 564 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 564 (868)
+||++++++++....++.+..++... ...++++|+++......+.. ... ..... .....++..+.++..
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~~~--~a~l~llhV~~~~~~~~~~~--~~~--~~~~~-----~~~~~~~~~~~l~~~ 73 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELARHN--DAHLTLIHIDDGLSELYPGI--YFP--ATEDI-----LQLLKNKSDNKLYKL 73 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHh--CCeEEEEEEccCcchhchhh--hcc--chHHH-----HHHHHHHHHHHHHHH
Confidence 69999999999999888888877544 35679999986432111000 000 00000 000111112223333
Q ss_pred HhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 565 QDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 565 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
.+..+...++..... .+..+.||+.|++.++|||+||.| +...+ ..+ .+.++|+++|+|||.|.
T Consensus 74 ~~~~~~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~-~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 74 TKNIQWPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLM-PAYRGMINKMSADLLIV 137 (142)
T ss_pred HHhcCCCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHH-HHHHHHHhcCCCCEEEe
Confidence 322122234444444 489999999999999999999965 32222 123 26799999999999886
No 37
>PRK15005 universal stress protein F; Provisional
Probab=98.49 E-value=2e-06 Score=83.31 Aligned_cols=140 Identities=12% Similarity=0.029 Sum_probs=83.4
Q ss_pred cceEEEeeccCcch--HHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHH
Q 043953 662 GLKLCMLFIGGPDD--REALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFIN 739 (868)
Q Consensus 662 ~~~I~v~f~GG~dd--reAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~ 739 (868)
.++|++++.|++++ +.|+++|.++|+..+++++++|++++....... ......+. .+.+..++.-++.++
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~l~ 73 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASL---GLAYSAEL-----PAMDDLKAEAKSQLE 73 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccc---cccccccc-----hHHHHHHHHHHHHHH
Confidence 46899999999884 799999999999999999999999643111000 00000000 000111222334455
Q ss_pred HHHhhcCCCCceEEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCc
Q 043953 740 EFRFKTMYDSSITYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAH 818 (868)
Q Consensus 740 ~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~ 818 (868)
++.++... ..+.+.. .+..|.....+++.. +.++||+|+|++++ |+.+| -+|...+.+.. .++
T Consensus 74 ~~~~~~~~-~~~~~~~-~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~---~a~ 137 (144)
T PRK15005 74 EIIKKFKL-PTDRVHV-HVEEGSPKDRILELAKKIPADMIIIASHRP-------DITTY----LLGSNAAAVVR---HAE 137 (144)
T ss_pred HHHHHhCC-CCCceEE-EEeCCCHHHHHHHHHHHcCCCEEEEeCCCC-------Cchhe----eecchHHHHHH---hCC
Confidence 55554432 2222332 233343333333321 45799999998731 23222 38999999999 799
Q ss_pred ccEEEEe
Q 043953 819 ASVLVVQ 825 (868)
Q Consensus 819 ~SVLVvq 825 (868)
++||||.
T Consensus 138 cpVlvVr 144 (144)
T PRK15005 138 CSVLVVR 144 (144)
T ss_pred CCEEEeC
Confidence 9999984
No 38
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.49 E-value=2.4e-06 Score=81.17 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=81.1
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHHHh
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEFRF 743 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~ 743 (868)
||+++..|+++.+.++++|.+||+.++.+++++|+.+....... .. .+.+++..++.++.+.+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~---------~~--------~~~~~~~~~~~~~~~~~ 63 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP---------SQ--------LEVNVQRARKLLRQAER 63 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc---------ch--------hHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999975422100 00 01112223344444433
Q ss_pred hcCCCCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCcccE
Q 043953 744 KTMYDSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHASV 821 (868)
Q Consensus 744 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~SV 821 (868)
..... .+.....+..++ +..+.|.++ +.++||+|+|.+++. ++ ...-+|...+.+.. .++++|
T Consensus 64 ~~~~~-g~~~~~~~~~~~-~~~~~I~~~a~~~~~dlIV~G~~~~~------~~----~~~~lGs~~~~v~~---~~~~pv 128 (132)
T cd01988 64 IAASL-GVPVHTIIRIDH-DIASGILRTAKERQADLIIMGWHGST------SL----RDRLFGGVIDQVLE---SAPCDV 128 (132)
T ss_pred Hhhhc-CCceEEEEEecC-CHHHHHHHHHHhcCCCEEEEecCCCC------Cc----cceecCchHHHHHh---cCCCCE
Confidence 32211 122222222222 222333322 346999999999753 11 23348999999998 789999
Q ss_pred EEEe
Q 043953 822 LVVQ 825 (868)
Q Consensus 822 LVvq 825 (868)
|||+
T Consensus 129 lvv~ 132 (132)
T cd01988 129 AVVK 132 (132)
T ss_pred EEeC
Confidence 9985
No 39
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.44 E-value=1.8e-06 Score=83.95 Aligned_cols=133 Identities=10% Similarity=0.052 Sum_probs=81.1
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRHY 564 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 564 (868)
|||+|++..++....++.+..++...+ ..++++|+.+......+... .. ...+ ......++....++.+
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~--~~-----~~~~--~~~~~~~~~~~~l~~~ 73 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMARPYN--AKVSLIHVDVNYSDLYTGLI--DV-----NLGD--MQKRISEETHHALTEL 73 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHHHhhC--CEEEEEEEccChhhhhhhhh--hc-----chHH--HHHHHHHHHHHHHHHH
Confidence 699999999998888888887775433 46799998421111000000 00 0000 0111112233344555
Q ss_pred HhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 565 QDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 565 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
.+. .++.+...... ..+.++.||+.|++.++||||||.|++ . . . .++++..+|+++|||||.|.
T Consensus 74 ~~~-~~~~~~~~~~~--~G~p~~~I~~~a~~~~~DLIV~Gs~~~-~----~---~-~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 74 STN-AGYPITETLSG--SGDLGQVLVDAIKKYDMDLVVCGHHQD-F----W---S-KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred HHh-CCCCceEEEEE--ecCHHHHHHHHHHHhCCCEEEEeCccc-H----H---H-HHHHHHHHHHhhCCCCEEEe
Confidence 443 34443222222 247899999999999999999999853 1 1 1 14567799999999999886
No 40
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.40 E-value=1.8e-06 Score=81.86 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=81.0
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHH--
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFIN-- 739 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~-- 739 (868)
.+||++++.|+++++.|+.+|.++|++++.+++++|+.+........ .. .. .+.+...++....
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~---------~~-~~----~~~~~~~~~~~~~~~ 67 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFS---------AA-ED----EESEEEAEEEEQARQ 67 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHH---------HH-HH----HHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccc---------cc-cc----cccccccchhhhhhh
Confidence 46999999999999999999999999999999999999764221100 00 00 0000000000000
Q ss_pred ---HHHhhcCCCCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCC
Q 043953 740 ---EFRFKTMYDSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNST 816 (868)
Q Consensus 740 ---~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~ 816 (868)
+.... ......+......+..+.+....+ ..++||+|+|+++. +++.+| -+|.+.+.++. .
T Consensus 68 ~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~-~~~~dliv~G~~~~------~~~~~~----~~gs~~~~l~~---~ 131 (140)
T PF00582_consen 68 AEAEEAEA--EGGIVIEVVIESGDVADAIIEFAE-EHNADLIVMGSRGR------SGLERL----LFGSVAEKLLR---H 131 (140)
T ss_dssp HHHHHHHH--HTTSEEEEEEEESSHHHHHHHHHH-HTTCSEEEEESSST------TSTTTS----SSHHHHHHHHH---H
T ss_pred HHHHHHhh--hccceeEEEEEeeccchhhhhccc-cccceeEEEeccCC------CCccCC----CcCCHHHHHHH---c
Confidence 00111 112233333334444333222222 56799999999974 222222 38999999999 7
Q ss_pred CcccEEEEe
Q 043953 817 AHASVLVVQ 825 (868)
Q Consensus 817 ~~~SVLVvq 825 (868)
+.++||||.
T Consensus 132 ~~~pVlvv~ 140 (140)
T PF00582_consen 132 APCPVLVVP 140 (140)
T ss_dssp TSSEEEEEE
T ss_pred CCCCEEEeC
Confidence 899999983
No 41
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.38 E-value=3.4e-06 Score=79.01 Aligned_cols=129 Identities=18% Similarity=0.228 Sum_probs=86.8
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRHY 564 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 564 (868)
+||+|+++++....+++.+..++...+ ..++++|+.+..+.... .... . .....++.++.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~--~~i~~l~v~~~~~~~~~---~~~~-------~----~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLG--AELVLLHVVDPPPSSAA---ELAE-------L----LEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCCCCcch---hHHH-------H----HHHHHHHHHHHHHHH
Confidence 589999999899999999999887654 56699999765444221 0000 0 111223444444433
Q ss_pred HhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEE
Q 043953 565 QDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGI 639 (868)
Q Consensus 565 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgI 639 (868)
... .+++++.....+ +..++|++.+++.++|++++|++++....+.+.++ .-+++++++||+|.+
T Consensus 65 ~~~-~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~------~~~~ll~~~~~pvli 129 (130)
T cd00293 65 LAE-AGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGS------VAERVLRHAPCPVLV 129 (130)
T ss_pred Hhc-CCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccceeeecc------HHHHHHhCCCCCEEe
Confidence 222 456666655544 44899999999999999999999876543333333 348999999999975
No 42
>PRK09982 universal stress protein UspD; Provisional
Probab=98.30 E-value=2.1e-06 Score=83.42 Aligned_cols=135 Identities=10% Similarity=0.027 Sum_probs=80.4
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEF 741 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~ 741 (868)
.++|+++..|+++.+.|+++|.+||+.++++++++|++++...... .....+. . ...+..++..++.+++.
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~-----~~~~~~~--~--~~~~~~~~~~~~~l~~~ 73 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYP-----GIYFPAT--E--DILQLLKNKSDNKLYKL 73 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhch-----hhhccch--H--HHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999864311000 0000000 0 00012223334556666
Q ss_pred HhhcCCCCceEEEEeecCChHHHHHHHHh-hcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCccc
Q 043953 742 RFKTMYDSSITYNDKMVSNVEELVESITT-MYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHAS 820 (868)
Q Consensus 742 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~-~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~S 820 (868)
+.+... ..+.+ .+..|..-..+++. .+.++||+|+|++ + +|++.| +| +.+-+.. .++++
T Consensus 74 ~~~~~~-~~~~~---~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~------~~~~~~-----~~-va~~V~~---~s~~p 133 (142)
T PRK09982 74 TKNIQW-PKTKL---RIERGEMPETLLEIMQKEQCDLLVCGHH-H------SFINRL-----MP-AYRGMIN---KMSAD 133 (142)
T ss_pred HHhcCC-CcceE---EEEecCHHHHHHHHHHHcCCCEEEEeCC-h------hHHHHH-----HH-HHHHHHh---cCCCC
Confidence 654322 22222 22223222222221 1557999999975 3 233222 35 7788887 79999
Q ss_pred EEEEe
Q 043953 821 VLVVQ 825 (868)
Q Consensus 821 VLVvq 825 (868)
||||.
T Consensus 134 VLvv~ 138 (142)
T PRK09982 134 LLIVP 138 (142)
T ss_pred EEEec
Confidence 99994
No 43
>PRK10116 universal stress protein UspC; Provisional
Probab=98.29 E-value=4.9e-06 Score=80.49 Aligned_cols=135 Identities=7% Similarity=0.045 Sum_probs=84.2
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRH 563 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 563 (868)
-+||++++..++....++.+..++...+ ..++++|+++............ . ... .....++..+.+++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~-~----~~~-----~~~~~~~~~~~l~~ 71 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVN--GKISLITLASDPEMYNQFAAPM-L----EDL-----RSVMQEETQSFLDK 71 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhC--CEEEEEEEccCcccchhhhHHH-H----HHH-----HHHHHHHHHHHHHH
Confidence 3799999999988888888888875543 4568999986532111100000 0 000 11111223334444
Q ss_pred HHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEe
Q 043953 564 YQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILV 641 (868)
Q Consensus 564 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlv 641 (868)
+.+. .++....... ...+..+.|++.|++.++||||+|-|++...... ..+-.+|+++|||||.|+-
T Consensus 72 ~~~~-~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~--------~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 72 LIQD-ADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA--------SCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHh-cCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH--------HHHHHHHHhcCCCCEEEEe
Confidence 4444 3443322222 3468899999999999999999999977543321 1345899999999998873
No 44
>PRK11175 universal stress protein UspE; Provisional
Probab=98.28 E-value=4.6e-06 Score=91.71 Aligned_cols=143 Identities=12% Similarity=0.072 Sum_probs=86.9
Q ss_pred CeEEEeecCCCCh-------hhHHHHHHhhccCC-CCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchH
Q 043953 484 LRILTCIHSVGNL-------SGIINLLELSNATK-KSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSD 555 (868)
Q Consensus 484 lriLv~v~~~~~~-------~~li~Ll~~~~~~~-~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (868)
-+||++++..+.. ..+++.+..++... + ..++++|+.+.............. ...+ .....+
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~~~~~~~~~---~~~~-----~~~~~~ 222 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNH--AEVHLVNAYPVTPINIAIELPEFD---PSVY-----NDAIRG 222 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcC--CceEEEEEecCcchhccccccccc---hhhH-----HHHHHH
Confidence 4799999976543 35777777766443 3 356999998654321100000000 0000 011112
Q ss_pred HHHHHHHHHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCc
Q 043953 556 LIINAFRHYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPC 635 (868)
Q Consensus 556 ~i~~af~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApC 635 (868)
+..+.++.+.+. .++......... .+..+.|++.|+++++|+|+||.|++....+.+-++. .++|++++||
T Consensus 223 ~~~~~l~~~~~~-~~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~------a~~v~~~~~~ 293 (305)
T PRK11175 223 QHLLAMKALRQK-FGIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNT------AEHVIDHLNC 293 (305)
T ss_pred HHHHHHHHHHHH-hCCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecch------HHHHHhcCCC
Confidence 233344555444 233332222222 4788999999999999999999999877666554444 4999999999
Q ss_pred ceEEEecCCC
Q 043953 636 SIGILVDRGI 645 (868)
Q Consensus 636 sVgIlvdrg~ 645 (868)
||.++..+|+
T Consensus 294 pVLvv~~~~~ 303 (305)
T PRK11175 294 DLLAIKPDGY 303 (305)
T ss_pred CEEEEcCCCC
Confidence 9998866664
No 45
>PRK15456 universal stress protein UspG; Provisional
Probab=98.24 E-value=1.4e-05 Score=77.38 Aligned_cols=138 Identities=13% Similarity=-0.003 Sum_probs=82.4
Q ss_pred cceEEEeeccCc--chHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHH
Q 043953 662 GLKLCMLFIGGP--DDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFIN 739 (868)
Q Consensus 662 ~~~I~v~f~GG~--ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~ 739 (868)
.++|++++.|++ .++.|+++|.++|+.. .+++++|++++...... .......++ + .+..++..++.++
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~---~~~~~~~~~---~---~~~~~~~~~~~l~ 71 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSL---HRFAADVRR---F---EEHLQHEAEERLQ 71 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccc---cccccchhh---H---HHHHHHHHHHHHH
Confidence 469999999984 7999999999999875 58999999865311000 000000000 0 0122333445566
Q ss_pred HHHhhcCCCCceEEEEeecCChHHHHHHHH-hhcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCc
Q 043953 740 EFRFKTMYDSSITYNDKMVSNVEELVESIT-TMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAH 818 (868)
Q Consensus 740 ~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~-~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~ 818 (868)
++.++... +...+. ..+..|....++++ ..+.+.||+|+|++++ + +..- -+|...+.++. .++
T Consensus 72 ~~~~~~~~-~~~~v~-~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~--~-~~~~--------llGS~a~~v~~---~a~ 135 (142)
T PRK15456 72 TMVSHFTI-DPSRIK-QHVRFGSVRDEVNELAEELGADVVVIGSRNP--S-ISTH--------LLGSNASSVIR---HAN 135 (142)
T ss_pred HHHHHhCC-CCcceE-EEEcCCChHHHHHHHHhhcCCCEEEEcCCCC--C-ccce--------ecCccHHHHHH---cCC
Confidence 66654332 222222 22333322222232 1145799999999863 2 2222 38999999999 799
Q ss_pred ccEEEEe
Q 043953 819 ASVLVVQ 825 (868)
Q Consensus 819 ~SVLVvq 825 (868)
++||||.
T Consensus 136 ~pVLvV~ 142 (142)
T PRK15456 136 LPVLVVR 142 (142)
T ss_pred CCEEEeC
Confidence 9999984
No 46
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.20 E-value=4.1e-06 Score=81.33 Aligned_cols=136 Identities=12% Similarity=0.072 Sum_probs=80.7
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEF 741 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~ 741 (868)
.+||+++..|.++++.|+.+|..+|+..+++++++|+..+....... . .... .++ ..+..++.-.+.++++
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-~-~~~~-~~~------~~~~~~~~~~~~l~~~ 73 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTG-L-IDVN-LGD------MQKRISEETHHALTEL 73 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhh-h-hhcc-hHH------HHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999995321010000 0 0000 000 0011111122333444
Q ss_pred HhhcCCCCceEEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCccc
Q 043953 742 RFKTMYDSSITYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHAS 820 (868)
Q Consensus 742 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~S 820 (868)
..+. .+...+..+..|....++++.. +.++||+|+|++++ ++ . .+|...+.++. .++++
T Consensus 74 ~~~~----~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-------~~---~---~lgSva~~v~~---~a~~p 133 (144)
T PRK15118 74 STNA----GYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQD-------FW---S---KLMSSARQLIN---TVHVD 133 (144)
T ss_pred HHhC----CCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCccc-------HH---H---HHHHHHHHHHh---hCCCC
Confidence 3321 1222333443343333344422 45799999999942 11 1 27889999999 79999
Q ss_pred EEEEec
Q 043953 821 VLVVQQ 826 (868)
Q Consensus 821 VLVvqq 826 (868)
||||..
T Consensus 134 VLvv~~ 139 (144)
T PRK15118 134 MLIVPL 139 (144)
T ss_pred EEEecC
Confidence 999975
No 47
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.19 E-value=1.2e-05 Score=75.76 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=76.8
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHHHh
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEFRF 743 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~ 743 (868)
||++++.|++.+++|+.+|.++|++.+.+++++++.+++... . .+. .++.++++++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~-~-------------------~~~----~~~~l~~~~~ 56 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR-L-------------------SEA----ERRRLAEALR 56 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc-C-------------------CHH----HHHHHHHHHH
Confidence 689999999999999999999999999999999998654211 0 011 1223333333
Q ss_pred hcCCCCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCC-ccc
Q 043953 744 KTMYDSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTA-HAS 820 (868)
Q Consensus 744 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~-~~S 820 (868)
.... ..+.+. .+.++. ..+.|.+. +.+.||+|+|.++.. .+..- -+|...+.++. .. +++
T Consensus 57 ~~~~-~~~~~~--~~~~~~-~~~~I~~~~~~~~~dllviG~~~~~--~~~~~--------~~Gs~~~~v~~---~a~~~~ 119 (124)
T cd01987 57 LAEE-LGAEVV--TLPGDD-VAEAIVEFAREHNVTQIVVGKSRRS--RWREL--------FRGSLVDRLLR---RAGNID 119 (124)
T ss_pred HHHH-cCCEEE--EEeCCc-HHHHHHHHHHHcCCCEEEeCCCCCc--hHHHH--------hcccHHHHHHH---hCCCCe
Confidence 2221 122332 222222 22323322 456899999999752 22122 48999999999 45 899
Q ss_pred EEEE
Q 043953 821 VLVV 824 (868)
Q Consensus 821 VLVv 824 (868)
|||+
T Consensus 120 v~v~ 123 (124)
T cd01987 120 VHIV 123 (124)
T ss_pred EEEe
Confidence 9997
No 48
>PRK10116 universal stress protein UspC; Provisional
Probab=98.12 E-value=9.3e-06 Score=78.54 Aligned_cols=135 Identities=11% Similarity=0.136 Sum_probs=81.2
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEF 741 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~ 741 (868)
.++|++++.+..+.+.|+++|.++|+..+++|+++++++........ . ....++ + .+..++.-+++++++
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~---~-~~~~~~-~-----~~~~~~~~~~~l~~~ 72 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQF---A-APMLED-L-----RSVMQEETQSFLDKL 72 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhh---h-HHHHHH-H-----HHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998542110000 0 000000 0 011112223445555
Q ss_pred HhhcCCCCceEEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCccc
Q 043953 742 RFKTMYDSSITYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHAS 820 (868)
Q Consensus 742 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~S 820 (868)
..+. .+......+..|.....+++.. ..++||+|+|+++. ++++.| +..++.++. .++++
T Consensus 73 ~~~~----~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~------~~~~~~------~s~a~~v~~---~~~~p 133 (142)
T PRK10116 73 IQDA----DYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNH------SFFSRA------SCSAKRVIA---SSEVD 133 (142)
T ss_pred HHhc----CCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcc------hHHHHH------HHHHHHHHh---cCCCC
Confidence 4432 1222223344444444444432 45799999999975 233222 345778887 79999
Q ss_pred EEEEe
Q 043953 821 VLVVQ 825 (868)
Q Consensus 821 VLVvq 825 (868)
||||.
T Consensus 134 VLvv~ 138 (142)
T PRK10116 134 VLLVP 138 (142)
T ss_pred EEEEe
Confidence 99994
No 49
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.01 E-value=0.017 Score=65.17 Aligned_cols=317 Identities=13% Similarity=0.098 Sum_probs=161.2
Q ss_pred CCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHH
Q 043953 72 HQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLS 151 (868)
Q Consensus 72 ~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ 151 (868)
.+|.++--++.|+++.. +|.+++ +...+..+.+.+..+-+-+++.=++.|+++++|.+++.+.
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~~---------------p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~ 86 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLIDS---------------PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL 86 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcCC---------------CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH
Confidence 37888888888898886 555521 1124566677777776667777788999999999887764
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-cCCCcchHHHHHHHHHHhhcc------HHHHHHHHHhcCcccChhHHHHHHHHHH
Q 043953 152 IAFAGIVIPFCIGAALHFVPIHEG-ITRESPNLGALFWAISLTITS------FPDLARILSDVKLLHTDIGKTALSSAIV 224 (868)
Q Consensus 152 ia~~~~llp~~~g~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts------~~vv~~iL~el~ll~s~~g~l~ls~a~v 224 (868)
++..-.+..++|..+++++.... ++ +..-++.+++.|- +..+... ++. + ..+.-+....
T Consensus 87 -~F~~~~~g~viG~~va~~l~~~~l~~------~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~---~-~~~~~a~~aa 152 (378)
T PF05684_consen 87 -AFLIGAVGTVIGAVVAFLLFGGFLGP------EGWKIAGMLAGSYIGGSVNFVAVAEA---LGV---S-DSLFAAALAA 152 (378)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhcccc------hHHHHHHHHHhcccCchhHHHHHHHH---HCC---C-HHHHHHHHHH
Confidence 34444455566666666554432 21 2222333333322 2222222 232 1 2333333444
Q ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhCCCCchhHHHHH
Q 043953 225 NDLSSWFLLVLVIVAFNHYSK-HRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKET-KKKAGKFSDTHISVI 302 (868)
Q Consensus 225 ~D~~~~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~-~~~~~~~~e~~~~~i 302 (868)
|.+..-+.+.+...+...... .+...+...-..... ....+.. .++.++.. ......
T Consensus 153 Dnv~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~-~~l~~~ 211 (378)
T PF05684_consen 153 DNVVMALWFAFLLALPPFARKFDRWTKADTSSIEALE--------------------EEIEAEEAEWARKPIS-QDLAFL 211 (378)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhccCCCccccchhh--------------------hhhhhhhhccccCCcH-hHHHHH
Confidence 555554555555444331000 000000000000000 0000000 00000000 112222
Q ss_pred HHHHHHHHHHHHHhch-------------hhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccc
Q 043953 303 LLGVVVCGFIADGCGM-------------HSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFLEL 369 (868)
Q Consensus 303 l~~~~~~~~lae~~g~-------------~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l 369 (868)
+.+.+....+++.++- -.++-....|++...+|..+.+ .--+.+ ..+++-+||+.+|++.|+..+
T Consensus 212 la~a~~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l 289 (378)
T PF05684_consen 212 LAVAFAVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATSFPPFRKLL-RGASEL-GTFLLYLFFAVIGASADISEL 289 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhccchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHH
Confidence 2222222222221111 1223334455555445555554 334455 577888899999999999888
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHHHHHHH
Q 043953 370 FSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAAMVFML 446 (868)
Q Consensus 370 ~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~ 446 (868)
.+. . ..+++.++.+..-.+..++.++++|+|..+...-+-. |.-|..+......+++..+..+-+...++-.+
T Consensus 290 ~~a--p-~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~A-nIGGpaTA~a~A~a~~~~Lv~pgvL~gvlGya 362 (378)
T PF05684_consen 290 LDA--P-SLFLFGFIILAIHLLLMLILGKLFKIDLFELLVASNA-NIGGPATAPAVAAAKGPSLVPPGVLMGVLGYA 362 (378)
T ss_pred HHh--H-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhhc-ccCCcchHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 763 2 2334445556778888889999999999886666654 77776666655556665555554444444333
No 50
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.95 E-value=0.00013 Score=68.16 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=81.4
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHHHh
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEFRF 743 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~ 743 (868)
+|++++.+++..+.++.+|.+||...+.++|++++.++...... + .++.+.+..++.+++++.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~-----------~------~~~~~~~~~~~~l~~~~~ 63 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA-----------E------LAELLEEEARALLEALRE 63 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch-----------h------HHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999865422100 0 001222334566677666
Q ss_pred hcCCCCceEEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCcccEE
Q 043953 744 KTMYDSSITYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHASVL 822 (868)
Q Consensus 744 ~~~~~~~v~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~SVL 822 (868)
.... ..+.+..+++.. ....++++.. +.++|++|+|.++.. .+.+ --.|.+.+.|.. .++++||
T Consensus 64 ~~~~-~~~~~~~~~~~~-~~~~~i~~~~~~~~~dlvvig~~~~~------~~~~----~~~~~~~~~ll~---~~~~pvl 128 (130)
T cd00293 64 ALAE-AGVKVETVVLEG-DPAEAILEAAEELGADLIVMGSRGRS------GLRR----LLLGSVAERVLR---HAPCPVL 128 (130)
T ss_pred HHhc-CCCceEEEEecC-CCHHHHHHHHHHcCCCEEEEcCCCCC------ccce----eeeccHHHHHHh---CCCCCEE
Confidence 5311 223333333332 2222333322 456899999998642 1111 147999999998 5788888
Q ss_pred EE
Q 043953 823 VV 824 (868)
Q Consensus 823 Vv 824 (868)
+|
T Consensus 129 iv 130 (130)
T cd00293 129 VV 130 (130)
T ss_pred eC
Confidence 75
No 51
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.86 E-value=0.0032 Score=67.93 Aligned_cols=252 Identities=16% Similarity=0.175 Sum_probs=144.4
Q ss_pred HHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHH
Q 043953 126 LTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILS 205 (868)
Q Consensus 126 l~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 205 (868)
+..++|-.|-++|++...+..||...+-+.-++++.+++.+++.+++..- ......+.+-++++.|--..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g----~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG----IFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc----ccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 45688899999999999888888888888888888888888888886431 12355666667777777777777778
Q ss_pred hcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 206 DVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIK 285 (868)
Q Consensus 206 el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~ 285 (868)
|++- ++|.|-..+. .++|.=-+.++++... ++ .
T Consensus 127 ~yG~-~~d~gA~~~~--sl~~GPf~tm~aLga~-------------------------------------------gL-A 159 (312)
T PRK12460 127 EFGD-ERDVGAISIL--SLNDGPFFTMLALGAA-------------------------------------------GL-A 159 (312)
T ss_pred HcCC-HhhhhHHhhh--hhccCcHHHHHHHHHH-------------------------------------------HH-h
Confidence 8775 5555532211 1222111111111100 11 0
Q ss_pred HhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhccc
Q 043953 286 ETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLRT 364 (868)
Q Consensus 286 ~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~ 364 (868)
+. | ..... +.+=+++.|+++.| .+ .+.+.+++- ..+.+|+|-+..|.++
T Consensus 160 ~i-p-------~~~lv------------------~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~l 209 (312)
T PRK12460 160 NI-P-------IMALV------------------AALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGI 209 (312)
T ss_pred cC-C-------hHHHH------------------HHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCe
Confidence 11 1 00000 02224556666666 22 223334433 3458899999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH--HHHhhhhhHHHHHHhhccccccCchHHHHHH
Q 043953 365 NFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALG--GLMNTKGVMALIVLNEGRSLKAIDNILMAAM 442 (868)
Q Consensus 365 dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg--~~m~~rG~v~lil~~~~~~~~ii~~~~~~~l 442 (868)
|++.+.+. .+. .+++.+...+.-....+...+++|.+.+-++.+| ..-+.-|...++-+. ...+.. .+.-++.
T Consensus 210 nl~~I~~~-G~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAad--P~~~~~-~~~Ataq 284 (312)
T PRK12460 210 NLSMLLQA-GLA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAAD--PSLAPV-AAAATAQ 284 (312)
T ss_pred eHHHHHHh-ChH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhc--hhHHHH-HHHHHHH
Confidence 99888764 232 2333333444455555666688899888887777 442222322222222 111211 2345555
Q ss_pred HHHHHHHHHhHHHHHH-HhhhH
Q 043953 443 VFMLLLMTGLVGPIFF-LANKK 463 (868)
Q Consensus 443 v~~~lv~t~i~~plv~-~l~~~ 463 (868)
+.++++.|.+..|++. |++|+
T Consensus 285 vaa~vivTail~P~~t~~~~k~ 306 (312)
T PRK12460 285 VAASVIVTAILTPLLTSWVAKK 306 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777888877665 44544
No 52
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.69 E-value=0.0067 Score=66.86 Aligned_cols=159 Identities=17% Similarity=0.224 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCCch------------------------hH-HHHHHHHHHHHHHHHHHhc-----
Q 043953 268 FILIFWFVLRPCIAWMIKETKKKAGKFSD------------------------TH-ISVILLGVVVCGFIADGCG----- 317 (868)
Q Consensus 268 ~~~~~~~v~r~~~~~l~~~~~~~~~~~~e------------------------~~-~~~il~~~~~~~~lae~~g----- 317 (868)
..+....+..|+.+|+++|..-+.++.++ .. +.++.+.+.+.+++.+.++
T Consensus 168 Glv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~ 247 (404)
T COG0786 168 GLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLA 247 (404)
T ss_pred HHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455667889999999876211111111 01 2233333344455777666
Q ss_pred hhhhHHHHHHHhhcCC-Cc--hhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 043953 318 MHSMAGGFIFGLIIPN-GE--LAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTV 394 (868)
Q Consensus 318 ~~~~lGafvaGl~l~~-~~--~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~ 394 (868)
+....++++.|+++.+ -+ ...++.++.-+.+.++-+.+|.+..=|++.+.++.+. ...+++++.+-..+.-+.+.+
T Consensus 248 lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l-~lpl~viL~vQ~i~m~lfa~f 326 (404)
T COG0786 248 LPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL-ALPLLVILAVQTIVMALFAIF 326 (404)
T ss_pred ccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHH
Confidence 5667899999999998 22 1222444444555788899999888899999888764 333344444444555566667
Q ss_pred HHHHHhCCChHHHHHHHHHHhh-hhhHHHHHHhh
Q 043953 395 LVALCYGMPVRDGVALGGLMNT-KGVMALIVLNE 427 (868)
Q Consensus 395 l~~~~~~~~~~e~~~lg~~m~~-rG~v~lil~~~ 427 (868)
...+.+|-++..+...+.-++. -|...-++++.
T Consensus 327 vtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 327 VTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 7778888877776664554433 44555566654
No 53
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.66 E-value=0.00056 Score=66.26 Aligned_cols=142 Identities=12% Similarity=0.181 Sum_probs=86.6
Q ss_pred CeEEEeec-CCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHH
Q 043953 484 LRILTCIH-SVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFR 562 (868)
Q Consensus 484 lriLv~v~-~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 562 (868)
-++++.++ +.+......+.+...+..... .++++++++..+........... .. ............++..+..+
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~ 80 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLGA--PLILLVVIDPLEPTALVSVALAD--AP-IPLSEEELEEEAEELLAEAK 80 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcCC--eEEEEEEeccccccccccccccc--ch-hhhhHHHHHHHHHHHHHHHH
Confidence 47888888 777777777777776655444 34677777655533221111000 00 00000001223355566555
Q ss_pred HHHhhCCCee-EEEEEEEecCCCc-hhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 563 HYQDRNDDIT-VQPLTAVSSFTSI-HEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 563 ~~~~~~~~v~-v~~~t~vs~~~~m-~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
...+. ..+. ++...... +. .+.|+..|.+.++|+|+||.+++++.++.+ ++++-++|++++||||.++
T Consensus 81 ~~~~~-~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~l------lGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 81 ALAEA-AGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRLL------LGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHHH-cCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCcccccee------eehhHHHHHhcCCCCEEEE
Confidence 55544 2333 23333333 45 699999999999999999999887766643 3344499999999999876
No 54
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.60 E-value=0.036 Score=62.57 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHhhcCC-Cc-hh-hHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 043953 318 MHSMAGGFIFGLIIPN-GE-LA-INIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTV 394 (868)
Q Consensus 318 ~~~~lGafvaGl~l~~-~~-~~-~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~ 394 (868)
+....+|++.|+++.+ .+ .+ .++..+.-+...++.+-+|.+..=+.+++..+.+. ..++++++++-.++.=+...+
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~-a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADY-ALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999987 22 11 11333333334666777777777788888888764 233333333333444445556
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 043953 395 LVALCYGMPVRDGVALGGL 413 (868)
Q Consensus 395 l~~~~~~~~~~e~~~lg~~ 413 (868)
+..+.+|-++ |+..+++.
T Consensus 326 v~fr~~gkdy-daavm~~G 343 (368)
T PF03616_consen 326 VTFRVMGKDY-DAAVMSAG 343 (368)
T ss_pred HhhhhhCCCh-hHHHHhhh
Confidence 6677788775 66666554
No 55
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.55 E-value=0.12 Score=57.35 Aligned_cols=89 Identities=9% Similarity=0.094 Sum_probs=58.7
Q ss_pred hcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhh
Q 043953 68 LKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEK 147 (868)
Q Consensus 68 ~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k 147 (868)
.++.+++.++--|+.|+++|+......+. ..-| .....-+.+-.+|+++ .|.++++.++.+.+.
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~-----------~~~~-Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~ 89 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE-----------EKKR-GVLFAKPFLLRIGITL----YGFRLTFPYIADVGP 89 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh-----------hccc-hHHHHHHHHHHHHHHH----HCccccHHHHHHhhH
Confidence 35568889998899999999853211111 0000 0112344666777665 599999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHhh
Q 043953 148 KSLSIAFAGIVIPFCIGAALH-FVPI 172 (868)
Q Consensus 148 ~~~~ia~~~~llp~~~g~~~~-~~l~ 172 (868)
+.+.+....+..++.++..++ ..++
T Consensus 90 ~~l~~~~~~v~~~~~~~~~~g~k~l~ 115 (335)
T TIGR00698 90 NEIVADTLILTSTFFLTVFLGSSRLK 115 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888777777777777666665 3554
No 56
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.43 E-value=0.041 Score=59.32 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCCcchHHHHHHHHHHhhccHHHHHH
Q 043953 124 LGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGI-TRESPNLGALFWAISLTITSFPDLAR 202 (868)
Q Consensus 124 lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~-~~~~~~~~~l~lg~~ls~Ts~~vv~~ 202 (868)
--+..++|-.|-++|++...+..||...+-+.-+++..+++.+++.+++..-- .+.......+.+-++++.+-...=..
T Consensus 49 ~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~a 128 (314)
T PF03812_consen 49 PIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLA 128 (314)
T ss_pred HHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHH
Confidence 34566889999999999999999999999999999999999999888875410 01112356677777788888777777
Q ss_pred HHHhcCcccChhH
Q 043953 203 ILSDVKLLHTDIG 215 (868)
Q Consensus 203 iL~el~ll~s~~g 215 (868)
+..|++- ++|.|
T Consensus 129 L~~~yGd-~~D~g 140 (314)
T PF03812_consen 129 LMGQYGD-EEDVG 140 (314)
T ss_pred HHHHhCC-HHHhH
Confidence 7788775 45544
No 57
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.39 E-value=0.0013 Score=73.41 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=76.4
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCC--CeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKP--GVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFIN 739 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~--~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~ 739 (868)
.+||++++.|++..+.|+++|..+|+.. +++|+++|+++....... . +...+..++.++
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~---------~----------~~~~~~~eelle 65 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE---------G----------QDELAAAEELLE 65 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc---------h----------hHHHHHHHHHHH
Confidence 6799999999999999999999999884 699999999875321100 0 001111222333
Q ss_pred HHHhhcC-----CCCceEEEEeecC---------ChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCcccc
Q 043953 740 EFRFKTM-----YDSSITYNDKMVS---------NVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGP 805 (868)
Q Consensus 740 ~~~~~~~-----~~~~v~y~e~~v~---------~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~ 805 (868)
+.++... ....+.++.+++. +..+++-...+ +.++||+|+|......+ + -|-|-+
T Consensus 66 ~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Ae-e~~aDLIVm~~~~~~~~--~--------~~~~~~ 134 (357)
T PRK12652 66 RVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAE-EHGIDRVVLDPEYNPGG--T--------APMLQP 134 (357)
T ss_pred HHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHH-HcCCCEEEECCCCCCCC--C--------Ccccch
Confidence 3332211 1134555555543 33333322222 55799999999864322 1 234788
Q ss_pred chhhhccCCCC
Q 043953 806 VGETLVSSNST 816 (868)
Q Consensus 806 igd~las~d~~ 816 (868)
+.-.|++.+..
T Consensus 135 ~~~~~~~~~~~ 145 (357)
T PRK12652 135 LERELARAGIT 145 (357)
T ss_pred HHHHHHhcCCc
Confidence 88888887654
No 58
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.19 E-value=0.16 Score=57.86 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=59.6
Q ss_pred chhhhHHHHHHHhhcCC-Cc-hh-hHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHH-HH
Q 043953 317 GMHSMAGGFIFGLIIPN-GE-LA-INIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKI-LS 392 (868)
Q Consensus 317 g~~~~lGafvaGl~l~~-~~-~~-~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~-l~ 392 (868)
.+....+|++.|+++.+ .+ .+ .++.++.-+...++.+-+|.+..=+.++++.+.+. +.-.+++++..++.-. ..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~--a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADL--AGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 36778999999999998 22 11 12333344445788888888888899999988773 4444444444444444 44
Q ss_pred HHHHHHHhCCChHHHHHHH
Q 043953 393 TVLVALCYGMPVRDGVALG 411 (868)
Q Consensus 393 ~~l~~~~~~~~~~e~~~lg 411 (868)
.++.-+.+|-+ .|+-.++
T Consensus 322 ~fv~fr~mg~~-ydaaV~~ 339 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVLC 339 (398)
T ss_pred HHHhHHhccch-HHHHHHh
Confidence 45566667766 7776643
No 59
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.2 Score=54.63 Aligned_cols=243 Identities=13% Similarity=0.185 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHH---HHHHHH-HHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHh
Q 043953 118 LETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIA---FAGIVI-PFCIGAALHFVPIHEGITRESPNLGALFWAISLT 193 (868)
Q Consensus 118 l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia---~~~~ll-p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls 193 (868)
++.--.+|+++.|+=.=+++|++++++..|..-.+. ....++ |+.+ +++++++.+..+ ......+.+|.+=+
T Consensus 49 ~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm-~~la~~fl~~~p---ey~~GlILlglApC 124 (342)
T COG0798 49 VSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLM-FALAWFFLPDEP---EYRAGLILLGLAPC 124 (342)
T ss_pred eehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHHHhCCCH---HHHHHHHHHHhhhh
Confidence 444556778888887888999999987765532222 222222 3333 333333332211 01122333333322
Q ss_pred hccHHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 043953 194 ITSFPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFW 273 (868)
Q Consensus 194 ~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 273 (868)
. |-..+-.-|+ +.+. ..++..-.+||++.+++++....+.-+. .+. .-.++.++..++..+.+-
T Consensus 125 ~-aMVivw~~La-----~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v-----~~~----~v~~~~i~~Sv~lyl~iP 188 (342)
T COG0798 125 I-AMVIVWSGLA-----KGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGV-----ISI----SVPFWTIAKSVLLYLGIP 188 (342)
T ss_pred H-HHHHHHHhhc-----cCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhh-----ccc----cccHHHHHHHHHHHHHHH
Confidence 2 2222333222 2222 4455666789999999887665544331 111 123455555555555555
Q ss_pred HHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHH-HHhH
Q 043953 274 FVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFI-SGVW 352 (868)
Q Consensus 274 ~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~-~~l~ 352 (868)
++.+.+.+++..|. +|+..-|.. ...+++++. -+++
T Consensus 189 li~G~lTR~i~~k~--kg~~~~~~~-----------------------------------------f~p~ispi~ligLl 225 (342)
T COG0798 189 LIAGVLTRYILIKK--KGREWYESR-----------------------------------------FLPKISPIALIGLL 225 (342)
T ss_pred HHHHHHHHHHHHHh--ccchHHHHH-----------------------------------------HHhhcChHHHHHHH
Confidence 66666666666665 332111111 111112110 0111
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHh
Q 043953 353 LPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLN 426 (868)
Q Consensus 353 ~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~ 426 (868)
.- .++....+-+.- ..+..+...+++-.+.-+...+..+++.++..|+|.+++..+++....+ -+|++++.
T Consensus 226 ~T-ivliF~~qg~~I-v~~p~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSN-nfeLAiAv 296 (342)
T COG0798 226 LT-IVLIFAFQGEQI-VEQPLDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASN-NFELAIAV 296 (342)
T ss_pred HH-HHHHHHHhHHHH-HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccc-cHHHHHHH
Confidence 11 111222222210 1111123333444444556677778888999999999998888874443 24444443
No 60
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.95 E-value=0.47 Score=51.87 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHH-
Q 043953 117 LLETFSSLGLTFYMFLVGLEMDVSAVKRM---EKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISL- 192 (868)
Q Consensus 117 ~l~~la~lgl~~llF~~Gle~d~~~l~~~---~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l- 192 (868)
+++..-.+++.++||..|+.+..+++++. +|........++.+-=++++++++++. . ..-+..|..+
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l-------~~~l~~Gl~ll 105 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--L-------PPELAVGLLLL 105 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--C-------CHHHHHhHHhe
Confidence 34434578899999999999999998755 445555555666665556666666554 1 2234444444
Q ss_pred ----hhccHHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHH
Q 043953 193 ----TITSFPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICF 268 (868)
Q Consensus 193 ----s~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (868)
+.|+. .+...+.. .++ -++++.+.++.+++.++.-+...+..++.. +... +..++.++..++.
T Consensus 106 ~~~Pggv~S-~~~t~lAk-----GnV-alsV~~tsvStll~~f~tPllv~l~~~~~v--~~~~----~~m~~~i~~~vll 172 (319)
T COG0385 106 GCCPGGVAS-NAMTYLAK-----GNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGV--PVDV----GGMFLSILLQVLL 172 (319)
T ss_pred eeCCCchhH-HHHHHHhc-----CcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCch----HHHHHHHHHHHHH
Confidence 33333 33333332 222 456677778888888777666655444200 1122 4555666555555
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 043953 269 ILIFWFVLRPCIAWMIKET 287 (868)
Q Consensus 269 ~~~~~~v~r~~~~~l~~~~ 287 (868)
=.+.+-+.|+......++.
T Consensus 173 P~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 173 PFVLGQLLRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666777776655554
No 61
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.85 E-value=0.61 Score=51.59 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhc
Q 043953 119 ETFSSLGLTFYMFLVGLEMDVSAVKRMEKKS---LSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTIT 195 (868)
Q Consensus 119 ~~la~lgl~~llF~~Gle~d~~~l~~~~k~~---~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 195 (868)
|....+++..+.|..|+.++.+++++..++. ...-...+++.=++++.+...+.... ...+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-------~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-------PPELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CHHHHHHHHHHhh
Confidence 4566777888888999999999998655443 33333333333334555554443221 1224444333222
Q ss_pred cHHH-HHH-HHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043953 196 SFPD-LAR-ILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFN 241 (868)
Q Consensus 196 s~~v-v~~-iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~ 241 (868)
-++. .+. .+...---|. ..++..+.++.++++++.-+...+..
T Consensus 103 lPtTv~S~v~~T~~AgGN~---a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 103 LPTTVSSSVVLTRLAGGNV---ALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred CCchhhHHHHHHHHcCCCH---HHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 1111 111 1222222222 45677778888888888766665544
No 62
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.85 E-value=0.26 Score=54.08 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=67.0
Q ss_pred ccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhH
Q 043953 70 PLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKS 149 (868)
Q Consensus 70 rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~ 149 (868)
...++.++--|+.|+++|+..++.-+. +.. .....-+.+-.+|+++ .|.++++..+.+.+.+.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~--------~~~-----Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~ 85 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPAR--------FKP-----GIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKG 85 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHH--------HHh-----HHHHHHHHHHHHHHHH----HCccccHHHHHHhCccH
Confidence 467888888899999999733332221 110 0112234666777765 59999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhcccCCCcchHHHHHHHHHHhh
Q 043953 150 LSIAFAGIVIPFCIGAALH-FVPIHEGITRESPNLGALFWAISLTI 194 (868)
Q Consensus 150 ~~ia~~~~llp~~~g~~~~-~~l~~~~~~~~~~~~~~l~lg~~ls~ 194 (868)
+.+....+.+.+.++..++ .+++.+. ..+.++++-.|+
T Consensus 86 ~~~~~~~v~~~~~~~~~lg~r~~~l~~-------~~~~Lia~GtsI 124 (305)
T PF03601_consen 86 LLIIIIVVILTFLLTYWLGRRLFGLDR-------KLAILIAAGTSI 124 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHhhccc
Confidence 8888888888888877777 6665432 345555544433
No 63
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.78 E-value=0.39 Score=54.23 Aligned_cols=267 Identities=11% Similarity=0.107 Sum_probs=143.5
Q ss_pred hccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHH-----hhccHHHHHHHHHhcCc
Q 043953 135 LEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISL-----TITSFPDLARILSDVKL 209 (868)
Q Consensus 135 le~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l-----s~Ts~~vv~~iL~el~l 209 (868)
+.||.+.+.|...|.+...+.+.+..++++.+++.+++..+. ...+.++.=. ..-+.|...-.-+-.+.
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~------~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~ 182 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK------DAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQ 182 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------HHHHHHHhhhcCCCccccHhHHHHHHHHHhCC
Confidence 489999999999998888888888889999999888876541 2222222211 11122211111112333
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCc--hhh---H------HHHHHHHHHHHHHHHHHHHHHH
Q 043953 210 LHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSK-HRHGPA--LTE---L------GAFLMAMLPIICFILIFWFVLR 277 (868)
Q Consensus 210 l~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~-~~~~~~--~~~---~------~~~l~~~~~~~~~~~~~~~v~r 277 (868)
-..+.-..++.+.++..+++++.-++.--+.....+ ++++.. ..+ . ...-..-...-++.+..+|+.+
T Consensus 183 ~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G 262 (414)
T PF03390_consen 183 DAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILG 262 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344555666777777788777776666544322100 000000 000 0 0000111122223333444444
Q ss_pred HHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHH
Q 043953 278 PCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFI 357 (868)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfF 357 (868)
.+...++ . .+ .+.+.++..+ +...+|+ + |+.-++-.+++..+...-+.+...
T Consensus 263 ~ll~~~i-~-------ih-~~a~mIi~~~-----i~K~~~l------------v--P~~~e~~a~~~~~f~~~~lt~~lL 314 (414)
T PF03390_consen 263 VLLSKLI-G-------IH-AYAWMIILVA-----IVKAFGL------------V--PESLEEGAKQWYKFFSKNLTWPLL 314 (414)
T ss_pred HHHHHhc-C-------Cc-HHHHHHHHHH-----HHHHhCc------------C--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 1 11 1222221111 1111111 1 333333344555665666777777
Q ss_pred HHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHhhhh-hHHHHHHhhccccccC
Q 043953 358 VVSGLR-TNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDG-VALGGLMNTKG-VMALIVLNEGRSLKAI 434 (868)
Q Consensus 358 v~~Gl~-~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~-~~lg~~m~~rG-~v~lil~~~~~~~~ii 434 (868)
+-+|+. +|+..+....++. .+++++...++-.++.++.+++.|+-+-|+ +..|+.|+.+| .-++++++.+...+++
T Consensus 315 vgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lm 393 (414)
T PF03390_consen 315 VGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELM 393 (414)
T ss_pred HHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcccc
Confidence 888888 9988887654555 345555667778888999999999866555 55566776655 4678887777776666
Q ss_pred ch
Q 043953 435 DN 436 (868)
Q Consensus 435 ~~ 436 (868)
+-
T Consensus 394 pF 395 (414)
T PF03390_consen 394 PF 395 (414)
T ss_pred cH
Confidence 54
No 64
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.63 E-value=0.026 Score=54.43 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=85.3
Q ss_pred cceEEEeec-cCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHH
Q 043953 662 GLKLCMLFI-GGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINE 740 (868)
Q Consensus 662 ~~~I~v~f~-GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~ 740 (868)
..+|++.+. |.+..+.|++.|...+...+..++++.+++........... ...... ... ....+...++.+++
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~-~~~---~~~~~~~~~~~~~~ 78 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVA--LADAPI-PLS---EEELEEEAEELLAE 78 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccc--cccchh-hhh---HHHHHHHHHHHHHH
Confidence 568999999 99999999999999999999999988887653221110000 000000 000 01123334555555
Q ss_pred HHhhcCCCCceEEEEeec--CCh-HHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCC
Q 043953 741 FRFKTMYDSSITYNDKMV--SNV-EELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTA 817 (868)
Q Consensus 741 ~~~~~~~~~~v~y~e~~v--~~~-~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~ 817 (868)
.+......+ +...+..+ .++ .+.+....+ ..++||+++|.++. +.+.. =-||...+.++. .+
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~g~~~~~~i~~~a~-~~~adliV~G~~g~--~~l~~--------~llGsvs~~v~~---~~ 143 (154)
T COG0589 79 AKALAEAAG-VPVVETEVVEGSPSAEEILELAE-EEDADLIVVGSRGR--SGLSR--------LLLGSVAEKVLR---HA 143 (154)
T ss_pred HHHHHHHcC-CCeeEEEEecCCCcHHHHHHHHH-HhCCCEEEECCCCC--ccccc--------eeeehhHHHHHh---cC
Confidence 555433322 22122222 333 233332222 34799999999743 12211 258999999999 79
Q ss_pred cccEEEEecc
Q 043953 818 HASVLVVQQS 827 (868)
Q Consensus 818 ~~SVLVvqq~ 827 (868)
+++|||+...
T Consensus 144 ~~pVlvv~~~ 153 (154)
T COG0589 144 PCPVLVVRSE 153 (154)
T ss_pred CCCEEEEccC
Confidence 9999999753
No 65
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.58 E-value=1 Score=49.68 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=57.5
Q ss_pred HHhHHHHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH-HHHHHhhhhh-HHHHHH
Q 043953 349 SGVWLPSFIVVSGLR-TNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVA-LGGLMNTKGV-MALIVL 425 (868)
Q Consensus 349 ~~l~~plfFv~~Gl~-~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~-lg~~m~~rG~-v~lil~ 425 (868)
+.+.-|+.+ .+|.. +|+..+.+..+|..+ ++.+...++-.++.++.+|+.|+-+-|+.. -|+.|+.+|. -+++++
T Consensus 326 k~~t~~Lm~-giGv~ytdl~ev~~alt~~~v-ii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVL 403 (438)
T COG3493 326 KNLTWPLMA-GIGVAYTDLNEVAAALTWQNV-IIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVL 403 (438)
T ss_pred HhhHHHHHH-hhhhccccHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHh
Confidence 445555544 45655 888887765456543 444556667788889999999986666554 4588877765 577777
Q ss_pred hhccccccCch
Q 043953 426 NEGRSLKAIDN 436 (868)
Q Consensus 426 ~~~~~~~ii~~ 436 (868)
+.+-..++++-
T Consensus 404 sAa~RM~LmpF 414 (438)
T COG3493 404 SAADRMELMPF 414 (438)
T ss_pred hhcchhccccH
Confidence 77666666654
No 66
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.56 E-value=0.024 Score=63.43 Aligned_cols=132 Identities=12% Similarity=0.128 Sum_probs=82.2
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRH 563 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 563 (868)
-|||+|++++++....++-+..++...+...+++++|+++....... .+ . .....+++++..++
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~----~~------~------~~~~~eelle~~~~ 69 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE----GQ------D------ELAAAEELLERVEV 69 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc----hh------H------HHHHHHHHHHHHHH
Confidence 47999999999999998888888854322358899999874321100 00 0 11222444554444
Q ss_pred HHhh-----CCCeeEEEEEEEe-----cCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccC
Q 043953 564 YQDR-----NDDITVQPLTAVS-----SFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKA 633 (868)
Q Consensus 564 ~~~~-----~~~v~v~~~t~vs-----~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~A 633 (868)
..+. ..+++++...... ...+.++.|++.|++.++|+|+|+=..+... +.+..|.+-.. |.++
T Consensus 70 ~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~------~~~~~~~~~~~-~~~~ 142 (357)
T PRK12652 70 WATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGG------TAPMLQPLERE-LARA 142 (357)
T ss_pred HHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCC------CCcccchHHHH-HHhc
Confidence 4322 1367777665542 1158999999999999999999996544321 23334444433 5666
Q ss_pred CcceE
Q 043953 634 PCSIG 638 (868)
Q Consensus 634 pCsVg 638 (868)
-|++-
T Consensus 143 ~~~~~ 147 (357)
T PRK12652 143 GITYE 147 (357)
T ss_pred CCcee
Confidence 66653
No 67
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.40 E-value=0.096 Score=63.45 Aligned_cols=118 Identities=19% Similarity=0.099 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhh-HHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHH
Q 043953 298 HISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAI-NIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLF 376 (868)
Q Consensus 298 ~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~-~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~ 376 (868)
.+.+.++.+.++..++..+|+++++|=.++|+++...-++- .-.+.++.+ .++-+.++...+|+.+|+..+... ..
T Consensus 9 ~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~--~~ 85 (621)
T PRK03562 9 QALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHF-AEFGVVLMLFVIGLELDPQRLWKL--RR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH--HH
Confidence 34555666677778888999999999999999986411110 112345555 677788888899999999887652 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhh
Q 043953 377 YLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKG 418 (868)
Q Consensus 377 ~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG 418 (868)
.++.+....++.-.+..+..++++|.+|..++.+|..+..-.
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 222222222223333444566778999999999998865443
No 68
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.32 E-value=2.2 Score=46.60 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhccChHHHHhhhh--hHHHHHHH-HH-HHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHH-hhcc
Q 043953 122 SSLGLTFYMFLVGLEMDVSAVKRMEK--KSLSIAFA-GI-VIPFCIGAALHFVPIHEGITRESPNLGALFWAISL-TITS 196 (868)
Q Consensus 122 a~lgl~~llF~~Gle~d~~~l~~~~k--~~~~ia~~-~~-llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l-s~Ts 196 (868)
.-..+.+.||..|+.++.+++++..+ +....++. .+ +.|.+. +..+.+++.. .....|..+ +.+.
T Consensus 10 ~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l~---------~~~~~glvL~~~~P 79 (286)
T TIGR00841 10 LLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKLP---------PELAVGVLIVGCCP 79 (286)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCCC---------HHHHHHHHheeeCC
Confidence 33448889999999999999988776 23334333 34 345443 5555554321 123333333 2222
Q ss_pred HHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 197 FPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVA 239 (868)
Q Consensus 197 ~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~ 239 (868)
.++.+.++.+.--.|. .++.+...++-+.+.+.+-+...+
T Consensus 80 ~~~~s~v~t~~~~gn~---~la~~~~~~stlls~vt~Pl~l~~ 119 (286)
T TIGR00841 80 GGTASNVFTYLLKGDM---ALSISMTTCSTLLALGMMPLLLYI 119 (286)
T ss_pred CchHHHHHHHHhCCCH---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2223334444332233 445555556666666665544443
No 69
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.23 E-value=0.25 Score=53.14 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=63.2
Q ss_pred HHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCCCcchHHHHHHHHHHhhccHHHHHHHH
Q 043953 126 LTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEG-ITRESPNLGALFWAISLTITSFPDLARIL 204 (868)
Q Consensus 126 l~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 204 (868)
+..++|-.|-++|++...+..||...+-..-+++..+++.+++.+++..- ..........+.+-++++.|--..=+.+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45688899999999998888888888878888888889988888887531 00111234566666677777766666777
Q ss_pred HhcCcccChhH
Q 043953 205 SDVKLLHTDIG 215 (868)
Q Consensus 205 ~el~ll~s~~g 215 (868)
.|++- ++|.|
T Consensus 131 ~qyGd-~~D~g 140 (314)
T TIGR00793 131 QQYGT-KEEAG 140 (314)
T ss_pred HHcCC-Hhhhh
Confidence 77775 44554
No 70
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.14 E-value=0.16 Score=54.85 Aligned_cols=127 Identities=13% Similarity=0.219 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhh-HHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHH
Q 043953 305 GVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAI-NIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTI 383 (868)
Q Consensus 305 ~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~-~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~ 383 (868)
.....+.+++.++++.++|-.++|+++...-++. .-.+.++.+ ..+-..++....|+++|++.+.+. +.....+.+
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~~ 79 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL--RKAAFGVGV 79 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHHH
Confidence 3455678899999999999999999997521110 111235555 567777888899999999888763 333333333
Q ss_pred HHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCch
Q 043953 384 VATSAK-ILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDN 436 (868)
Q Consensus 384 ~~~~~K-~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~ 436 (868)
..++.- ++..+..+++++.++.+++.+|..+.+-. .-++..+..|.+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~ 131 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKT 131 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccC
Confidence 444444 44445566778999999999999877543 2333444455555443
No 71
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.98 E-value=0.22 Score=60.15 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC--chhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHH
Q 043953 299 ISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNG--ELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLF 376 (868)
Q Consensus 299 ~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~--~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~ 376 (868)
..+.++...++..++..+|+++++|=.++|+++... ..-+. .+.++.+ .++-+.++...+|+.+|+..+... ..
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~--~~ 85 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQL--RR 85 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHH--HH
Confidence 344455555666788889999999999999998641 11111 1335555 577778888888999999887652 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 043953 377 YLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMN 415 (868)
Q Consensus 377 ~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~ 415 (868)
.++.+....++.-.+.....+.++|+++..++.+|..+.
T Consensus 86 ~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la 124 (601)
T PRK03659 86 SIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA 124 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 122222222222222222344556899999988887654
No 72
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.92 E-value=0.23 Score=59.60 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhh-HHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHH
Q 043953 301 VILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAI-NIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLL 379 (868)
Q Consensus 301 ~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~-~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~ 379 (868)
.+++.+++++.++..++++.++|=.++|+++...-++. .-.+.++.+ .++-+.++...+|+++|+..+... .....
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~--~~~~~ 89 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPEL-AELGVILLMFGVGLHFSLKDLMAV--KSIAI 89 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH--hhHHH
Confidence 44556667778888889999999999999986521111 011334444 677777788888999999887542 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCch
Q 043953 380 LTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDN 436 (868)
Q Consensus 380 ~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~ 436 (868)
...+..++.=++..+.....+++++.+++.+|..++.-.. .+++....+.|.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s 144 (558)
T PRK10669 90 PGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDS 144 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccC
Confidence 1122222223334444556778999999999987666332 344555566666554
No 73
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.68 E-value=2.5 Score=47.03 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhccChHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccH-H
Q 043953 123 SLGLTFYMFLVGLEMDVSAVKRMEKK---SLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSF-P 198 (868)
Q Consensus 123 ~lgl~~llF~~Gle~d~~~l~~~~k~---~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~-~ 198 (868)
.++++++||-.|++++++++++..|+ ....-+.++++-=++++.+++.+... ...+.+|..+-...+ .
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~--------~p~l~~GliLv~~~Pgg 117 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRD--------LFEYIAGLILLGLARCI 117 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CHHHHHHHHHHHhcchH
Confidence 34666899999999999988876554 33333344444333455555544222 122455544422222 2
Q ss_pred HHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 199 DLARILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVI 237 (868)
Q Consensus 199 vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~ 237 (868)
+.+.+++.+.. .+. .++++...++-+++.++.-...
T Consensus 118 ~~S~v~T~lAk--Gnv-alsv~lt~~stLl~~~~~P~l~ 153 (328)
T TIGR00832 118 AMVFVWNQLAK--GDP-EYTLVLVAVNSLFQVFLYAPLA 153 (328)
T ss_pred HHHHHHHHHcC--CCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444433 333 3555666777777766664443
No 74
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.62 E-value=0.4 Score=52.65 Aligned_cols=128 Identities=18% Similarity=0.170 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHH----HhchhhhHHHHHHHhhcCC--CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhh
Q 043953 301 VILLGVVVCGFIAD----GCGMHSMAGGFIFGLIIPN--GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTK 374 (868)
Q Consensus 301 ~il~~~~~~~~lae----~~g~~~~lGafvaGl~l~~--~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~ 374 (868)
+.+++.....++++ ..++++.+=|.+.|+++.| ....+.+..-++.. ...++.+=.+..|.++++..+.+. .
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-G 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-C
Confidence 33444444445554 3577888889999999997 33444555545543 567888889999999999888764 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccc
Q 043953 375 LFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRS 430 (868)
Q Consensus 375 ~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~ 430 (868)
+..++..++...+.=.++.++..+.+|++.+.+..++...+.=|.-+++...-..+
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~ 138 (305)
T PF03601_consen 83 WKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIK 138 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHccccc
Confidence 43333444444444444444555999999999999999977777666655544433
No 75
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.46 E-value=1.2 Score=49.31 Aligned_cols=269 Identities=15% Similarity=0.106 Sum_probs=137.4
Q ss_pred hccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHH-----HhhccHHHHHHHHH-hcC
Q 043953 135 LEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAIS-----LTITSFPDLARILS-DVK 208 (868)
Q Consensus 135 le~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~-----ls~Ts~~vv~~iL~-el~ 208 (868)
+.||.+.+.|...+-+...+.+.+..++.+.+++.+++..+. ...+++..= ...-+.|. +.+-+ -.+
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~------~~~~~i~lPIm~GG~GaGavPL-S~~Y~~~~g 112 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD------HSLMYIVMPIMAGGVGAGIVPL-SIIYSAITG 112 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh------HhhheeeehhcCCCcccchhhH-HHHHHHHhC
Confidence 489999999998888888888888888888888888776541 111111110 00111111 11111 123
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 043953 209 LLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSK-HRHGPALTELGAFLMAMLPIICFILIFWFVLRPC-IAWMIKE 286 (868)
Q Consensus 209 ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~-~~~l~~~ 286 (868)
....+.-..++.+.++..+++++.-++.--+.....+ +++... .|.- -.-..+.
T Consensus 113 ~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L------------------------~~~~~~~~~~~~ 168 (347)
T TIGR00783 113 RSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGEL------------------------VRSEKREDAEKA 168 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceE------------------------eecCCcchhhhc
Confidence 3333444455566666666666655544333211000 000000 0000 0000000
Q ss_pred hhhh-CCCCchhHHHHHHHHHHHHHH---HHHHh-chhhhHHHHHHHhhcCC-CchhhHHHHHHHHH---HHHhHHHHHH
Q 043953 287 TKKK-AGKFSDTHISVILLGVVVCGF---IADGC-GMHSMAGGFIFGLIIPN-GELAINIMERTEEF---ISGVWLPSFI 357 (868)
Q Consensus 287 ~~~~-~~~~~e~~~~~il~~~~~~~~---lae~~-g~~~~lGafvaGl~l~~-~~~~~~l~~~l~~~---~~~l~~plfF 357 (868)
. ++ ..+.+-.....-+++++..+. +.+.+ ++|+..-+.++|.++.. .-..+++.++...+ ...-+.+..+
T Consensus 169 ~-~~~~~~~~~~~~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll 247 (347)
T TIGR00783 169 K-EITEIKIDVKLMGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLM 247 (347)
T ss_pred c-ccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 001111112222222222211 22222 56777777777777776 43444555544433 3333444445
Q ss_pred HHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHhhhhh-HHHHHHhhccccccC
Q 043953 358 VVSGLR-TNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDG-VALGGLMNTKGV-MALIVLNEGRSLKAI 434 (868)
Q Consensus 358 v~~Gl~-~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~-~~lg~~m~~rG~-v~lil~~~~~~~~ii 434 (868)
+-+|+. +|+..+.+..+|. .+++++...++=.++.++.+++.|+-+-|+ +..|+.|+.+|. -++++++.+...+++
T Consensus 248 ~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lm 326 (347)
T TIGR00783 248 VGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLI 326 (347)
T ss_pred HHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcccc
Confidence 555766 7887776642343 455666777788889999999999855555 555677766554 677777777766666
Q ss_pred ch
Q 043953 435 DN 436 (868)
Q Consensus 435 ~~ 436 (868)
.-
T Consensus 327 pf 328 (347)
T TIGR00783 327 PF 328 (347)
T ss_pred cH
Confidence 53
No 76
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.33 E-value=0.35 Score=58.11 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchh---hHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHH
Q 043953 300 SVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELA---INIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLF 376 (868)
Q Consensus 300 ~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~---~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~ 376 (868)
.+++++..+++.+++.+|++.+++-.++|+++....++ ..-.+-.+.+ ..+.++++....|+++|+..+.. .+.
T Consensus 12 ~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~ 88 (562)
T PRK05326 12 ALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALG 88 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHH
Confidence 34445555666778888889899999999888762211 1111233444 78889999999999999988876 344
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCCChHHHHHHHHHHhhhhhH
Q 043953 377 YLLLTTIVATSAKILS-TVLVALCYGMPVRDGVALGGLMNTKGVM 420 (868)
Q Consensus 377 ~~~~ii~~~~~~K~l~-~~l~~~~~~~~~~e~~~lg~~m~~rG~v 420 (868)
..+.+....++.-.+. .+...++++++|.+++.+|..+++-...
T Consensus 89 ~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 89 PALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 4444434443333333 4455567899999999999887765543
No 77
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.25 E-value=0.75 Score=46.00 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=76.5
Q ss_pred cccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHH---Hhh
Q 043953 69 KPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAV---KRM 145 (868)
Q Consensus 69 ~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l---~~~ 145 (868)
+++++-...+-+++|+++|- ++...+ .. .| ....+.+.++|+.+|++.+|++--++-+ |+.
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~--~~~~~~--------~~---~~---~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~ 82 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGA--LGRTGP--------IF---LP---ISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRG 82 (169)
T ss_pred cceeccccHHHHHHHHHHHH--hhhccC--------CC---CC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777788999999985 222222 11 12 4567789999999999999998877544 566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHH-HHHhhccHHHHHHHHHh
Q 043953 146 EKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWA-ISLTITSFPDLARILSD 206 (868)
Q Consensus 146 ~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 206 (868)
+.+...+++.-.++|.++++.+++++.+. ......| .+=+.|++|.+....+.
T Consensus 83 G~~~~~~~~~i~~~~~~~~~~~~~~~~~l--------~~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 83 GLKLLLLGVIITLVPLLIALVIGRYLFKL--------NPGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CHHHHHHHHHccccCcHHHHHHHHh
Confidence 66777777777778888888877743322 1233334 34477888877766544
No 78
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.67 Score=53.03 Aligned_cols=139 Identities=20% Similarity=0.230 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Cc-hhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhH
Q 043953 298 HISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-GE-LAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKL 375 (868)
Q Consensus 298 ~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~~-~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~ 375 (868)
.+.++++.+...+.+.+.+|+++++|=.++|+++.. .- .-.+-.+.++.+ .++=.-++...+|+.+|+..+......
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~l-aelGvi~LlF~~GLE~~~~~l~~~~~~ 88 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELL-AELGVVFLLFLIGLEFDLERLKKVGRS 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHH-HHHhHHHHHHHHHHCcCHHHHHHhchh
Confidence 455666666777799999999999999999999986 22 122222333333 455566667789999999888764222
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHH
Q 043953 376 FYLLLTTIVATSAKILST--VLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAA 441 (868)
Q Consensus 376 ~~~~~ii~~~~~~K~l~~--~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~ 441 (868)
. ........+..=++.. +... .++.++..++.+|..+..-.. -+.+.+..|.|....+.-..
T Consensus 89 ~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~ 152 (397)
T COG0475 89 V-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQL 152 (397)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHH
Confidence 1 2222222222222222 2222 589999999999988655332 13334445555555444333
No 79
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.17 E-value=0.19 Score=51.24 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhhccCh-----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHH-
Q 043953 119 ETFSSLGLTFYMFLVGLEMDV-----SAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISL- 192 (868)
Q Consensus 119 ~~la~lgl~~llF~~Gle~d~-----~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l- 192 (868)
+...+..+.+++|.+|+++-- +.+++.+++++.+.+..++-+++.+.+++.++...+ .+++.+++-+
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~~-------~~~lav~sG~G 95 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLSL-------KESLAVASGFG 95 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHccCc
Confidence 667788899999999998844 356677789999999999999999988888885443 4555555444
Q ss_pred --hhccHHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 193 --TITSFPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVI 237 (868)
Q Consensus 193 --s~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~ 237 (868)
|.|+ .++.|++ +.+.|.++.-+=++-+++++++.-++.
T Consensus 96 wYSlsg-----~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 96 WYSLSG-----VLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHhHH-----HHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 2334433 568899888888888888877665443
No 80
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.01 E-value=0.3 Score=53.36 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=84.1
Q ss_pred HHHHHhchhhhHHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 043953 311 FIADGCGMHSMAGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAK 389 (868)
Q Consensus 311 ~lae~~g~~~~lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K 389 (868)
...+..|+++..=|.+.|+++.. .+.+.+...-++.. ...++.+=.++.|++++++++.+. .+. .+.+.+..+..-
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t 106 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSST 106 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHH
Confidence 34455666788889999999987 55555555555554 677788888999999999988764 222 444555566667
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhc
Q 043953 390 ILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEG 428 (868)
Q Consensus 390 ~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~ 428 (868)
++.++...+++|++++.+..+|..-+.=|.-+++..+-.
T Consensus 107 ~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pv 145 (334)
T COG2855 107 FLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPV 145 (334)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCc
Confidence 777888888999999999999998777776666554433
No 81
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.82 E-value=7.9 Score=42.64 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=70.8
Q ss_pred cccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhh
Q 043953 69 KPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKK 148 (868)
Q Consensus 69 ~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~ 148 (868)
...++|..+--|+.||++|. +...+. ... ..-...-..+-++|+++ .|.++++..+...+.+
T Consensus 33 ~~~~l~al~lAIllGi~l~~--l~~~~~-----------~~~-~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~ 94 (334)
T COG2855 33 IHLGLSALTLAILLGILLGI--LPQIPA-----------QTS-AGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGS 94 (334)
T ss_pred hhcCchHHHHHHHHHHHHhc--cccchh-----------hhc-cchhhhHHHHHHHHHHH----HcceeeHHHHHHcCcc
Confidence 45778999999999999993 222111 000 01123345556667665 4999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhcc
Q 043953 149 SLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITS 196 (868)
Q Consensus 149 ~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts 196 (868)
.+.+-...+..++++++.++.+++.+. ..++++|+--|+..
T Consensus 95 ~v~~~~~~l~~t~~~~~~lg~~lgld~-------~~a~Lia~GssICG 135 (334)
T COG2855 95 GVLIIAITLSSTFLFAYFLGKLLGLDK-------KLALLIAAGSSICG 135 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHccchhhH
Confidence 998888888888888888888666543 55666665544433
No 82
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.82 E-value=0.65 Score=56.73 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=52.8
Q ss_pred HHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChHHHHHHHHHHhhhhhH
Q 043953 348 ISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALC--YGMPVRDGVALGGLMNTKGVM 420 (868)
Q Consensus 348 ~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~--~~~~~~e~~~lg~~m~~rG~v 420 (868)
++.+.+++-....|++++...+.. .|..+..+++.+...-++.+.+.+++ .+++|..++.+|.++.+-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 367788888889999999988876 46555555555555555555555554 499999999999999887754
No 83
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.82 E-value=1.7 Score=44.12 Aligned_cols=108 Identities=17% Similarity=0.257 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhccChHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccH-HH
Q 043953 124 LGLTFYMFLVGLEMDVSAVKRMEKKSLSIA---FAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSF-PD 199 (868)
Q Consensus 124 lgl~~llF~~Gle~d~~~l~~~~k~~~~ia---~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~-~v 199 (868)
+.+.+.||..|++++++++++..|+...+. +.++++.=++++++++.+... ...+..|..+...++ +.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~--------~~~~~~Gl~l~~~~P~~~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPL--------SPALALGLLLVAACPGGP 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHhcCCcHH
Confidence 457789999999999999998876644332 233444334444444222221 122333333322111 22
Q ss_pred HHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043953 200 LARILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNH 242 (868)
Q Consensus 200 v~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~ 242 (868)
.+.....+. +.+. .++.+...++.+.+.++.-+...+..+
T Consensus 74 ~s~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 74 ASNVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 333344333 2222 356666777777777776666555443
No 84
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.60 E-value=0.77 Score=57.54 Aligned_cols=40 Identities=8% Similarity=-0.026 Sum_probs=29.8
Q ss_pred cceEEEeeccCcchHHHHHHHHHhh--cCCCeEEEEEEeeec
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMA--GKPGVNLTVVRYVYN 701 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma--~~~~v~ltvl~~~~~ 701 (868)
..||++.+-+-.|-+-.+.++.-.. +.+...+.++|+++-
T Consensus 458 elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL 499 (832)
T PLN03159 458 ELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVEL 499 (832)
T ss_pred ceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEee
Confidence 5699988886666677777766653 445689999999864
No 85
>PRK03818 putative transporter; Validated
Probab=94.45 E-value=0.57 Score=55.87 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhh-cccCCCchHHHHHHHHhhCccc--ccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHH
Q 043953 55 GFAIVAIRLFIILL-KPLHQPRFIPELLTSILIGPST--FGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMF 131 (868)
Q Consensus 55 ~lil~~~~l~~~l~-~rl~~P~iv~~IlaGilLGPs~--Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF 131 (868)
++.+.++.+++.+- +.+++- +.|-+++|+++|-.. +|.. .| ......+.++|+.+|+|
T Consensus 12 ~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~~~~~---------------~~---~~~~~~~~~~gl~lFv~ 72 (552)
T PRK03818 12 ALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQFGLT---------------LD---SDMLHFIQEFGLILFVY 72 (552)
T ss_pred HHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccccCcc---------------cC---hHHHHHHHHHHHHHHHH
Confidence 33344444444321 223333 378888999988521 1111 11 45677799999999999
Q ss_pred HHhhccChHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHH-HHHhhccHHHHHHHHH
Q 043953 132 LVGLEMDVSAV---KRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWA-ISLTITSFPDLARILS 205 (868)
Q Consensus 132 ~~Gle~d~~~l---~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~ 205 (868)
.+|++.-+..+ |+.+.+...+++...+++.++++.+.++++... ....| .+=+.|++|.+.....
T Consensus 73 ~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 73 TIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL---------PVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHhhccccccHHHHHHHH
Confidence 99999988765 455556666777777777777666655554322 23333 3447777777766554
No 86
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=94.44 E-value=2.4 Score=47.00 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=38.0
Q ss_pred HHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043953 127 TFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIH 173 (868)
Q Consensus 127 ~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~ 173 (868)
..++|..|-.+|++...+..||...+.+.-+.+..+++..++.+++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 36888999999999988888888888777777777777777766654
No 87
>PRK10490 sensor protein KdpD; Provisional
Probab=94.34 E-value=0.46 Score=60.22 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=84.8
Q ss_pred CCCCeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHH
Q 043953 481 DTELRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINA 560 (868)
Q Consensus 481 ~~elriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 560 (868)
....|||||+....+...+++-+..++...+.+. +++|+.....+.. ..+..+++.+.
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~--~~l~V~~~~~~~~--------------------~~~~~~~l~~~ 305 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARLGSVW--HAVYVETPRLHRL--------------------PEKKRRAILSA 305 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhcCCCE--EEEEEecCCcCcC--------------------CHHHHHHHHHH
Confidence 4567899999999999999999998887765555 9999853211100 11122456666
Q ss_pred HHHHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCC-cceEE
Q 043953 561 FRHYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAP-CSIGI 639 (868)
Q Consensus 561 f~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~Ap-CsVgI 639 (868)
++ .+++.|. .+... +.+++.+.|.+.|++++++.||||-.++.+. +. .+++.+++++.+| -+|-|
T Consensus 306 ~~-lA~~lGa-~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~~-----~~s~~~~l~r~~~~idi~i 371 (895)
T PRK10490 306 LR-LAQELGA-ETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW---WR-----RESFADRLARLGPDLDLVI 371 (895)
T ss_pred HH-HHHHcCC-EEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC---cc-----CCCHHHHHHHhCCCCCEEE
Confidence 65 4444233 33322 2379999999999999999999997665432 10 1245689999999 77777
Q ss_pred Ee
Q 043953 640 LV 641 (868)
Q Consensus 640 lv 641 (868)
+-
T Consensus 372 v~ 373 (895)
T PRK10490 372 VA 373 (895)
T ss_pred Ee
Confidence 64
No 88
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.15 E-value=1.4 Score=48.93 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=72.3
Q ss_pred hchhhhHHHHHHHhhcCC-C--chhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 043953 316 CGMHSMAGGFIFGLIIPN-G--ELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILS 392 (868)
Q Consensus 316 ~g~~~~lGafvaGl~l~~-~--~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~ 392 (868)
.++++.+=|.+.|+++.+ . +..+....-++ +....++-+=.+..|+++++.++... .+. .+.+.+.....-+..
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~-G~~-~l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADV-GPN-EIVADTLILTSTFFL 105 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHh-hHH-HHHHHHHHHHHHHHH
Confidence 467888888999999988 2 22233332233 33566677778899999999888653 333 233333333344444
Q ss_pred -HHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhcc
Q 043953 393 -TVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGR 429 (868)
Q Consensus 393 -~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~ 429 (868)
.++..+.+|++++.+..++...+.=|.-+++...-..
T Consensus 106 ~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i 143 (335)
T TIGR00698 106 TVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI 143 (335)
T ss_pred HHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc
Confidence 4455589999999999999987777766665554433
No 89
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=94.10 E-value=12 Score=41.66 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhch--hhhHHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchh-hHHHHHH
Q 043953 305 GVVVCGFIADGCGM--HSMAGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKT-KLFYLLL 380 (868)
Q Consensus 305 ~~~~~~~lae~~g~--~~~lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~-~~~~~~~ 380 (868)
..++.+.+...+++ ..++|+++.|..+.- .....++-+-+. .+..-+.-..+|.++|-..+.... .....++
T Consensus 196 ~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v 271 (352)
T COG3180 196 AALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILREAKRLLPAILV 271 (352)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHHhHhhcchHHH
Confidence 33344444444444 234566666666554 211112211111 223334556789998866655432 2223445
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccc
Q 043953 381 TTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRS 430 (868)
Q Consensus 381 ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~ 430 (868)
.++..++.-....++..++.+.++.++. + ...|-|.-+++....+.+
T Consensus 272 ~ii~l~~~~~~~a~ll~~~~~i~~~ta~-L--a~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 272 SIIALMAIAAGMAGLLSWLTGIDLNTAY-L--ATSPGGLDTMAAIAAALG 318 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHH-H--HcCCCcHHHHHHHHHHcC
Confidence 5555666667777778888888887753 3 347878777766665554
No 90
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.03 E-value=0.69 Score=45.48 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhh----h
Q 043953 73 QPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEK----K 148 (868)
Q Consensus 73 ~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k----~ 148 (868)
+-...+-+++|+++|- ++...+ +.-. .| ......+.++|+.+|++.+|++--.+.+..-.+ .
T Consensus 21 LG~~~G~L~vgL~~G~--~~~~~p--------~~~~-~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~ 86 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGH--FGATGP--------LTWY-IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLL 86 (154)
T ss_pred ecccHHHHHHHHHHHh--ccccCC--------ccee-cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHH
Confidence 3347788999999996 343322 1111 12 346778899999999999999988765543222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHH-HHhhccHHHHHHHHHhcC
Q 043953 149 SLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAI-SLTITSFPDLARILSDVK 208 (868)
Q Consensus 149 ~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el~ 208 (868)
...++..-.++|.+++..+...+.+. ......|+ +=+.|++|.+....+..+
T Consensus 87 ~~~~g~~v~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 87 RINGGALITVVPTLLVAVALIKLLRI--------NYALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHhccccChHHHHHHHHHhc
Confidence 33344444445544444444333221 12344443 457888888777655443
No 91
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.01 E-value=1.1 Score=53.21 Aligned_cols=117 Identities=13% Similarity=0.212 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhH--HHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHH
Q 043953 301 VILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAIN--IMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYL 378 (868)
Q Consensus 301 ~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~--l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~ 378 (868)
..++.+.+...+++.++++..++-+++|+++...+.... +.. + ....+++|......|+++|...+.. .+..+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~-~~~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i 79 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--E-IVLFLFLPPLLFEAAMNTDLRELRE--NFRPI 79 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--H-HHHHHHHHHHHHHHHhcCCHHHHHH--HHHHH
Confidence 334444555667778888888888888888774221111 111 1 1245788999999999999998876 34444
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhCCChHHHHHHHHHHhhhhhHHH
Q 043953 379 LLTTIVATSAKILS-TVLVALCYGMPVRDGVALGGLMNTKGVMAL 422 (868)
Q Consensus 379 ~~ii~~~~~~K~l~-~~l~~~~~~~~~~e~~~lg~~m~~rG~v~l 422 (868)
..+.+...+.-.+. ++...+..++|+..++.+|..+++-..+..
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 44433333333333 333334679999999999999988876654
No 92
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.78 E-value=0.88 Score=54.45 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=52.7
Q ss_pred cccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhh-
Q 043953 69 KPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEK- 147 (868)
Q Consensus 69 ~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k- 147 (868)
+.+++-.+.+-+++|+++|-. |.--+ +.+.++|+++|+|.+|++.-+.-++.-.|
T Consensus 31 ~~~~LG~~~gvLfvgl~~G~~--g~~i~----------------------~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~ 86 (562)
T TIGR03802 31 GSFQLGGVAGSLIVAVLIGQL--GIQID----------------------PGVKAVFFALFIFAIGYEVGPQFFASLKKD 86 (562)
T ss_pred eeeecchHHHHHHHHHHHHhc--CCCCC----------------------hHHHHHHHHHHHHHhhhccCHHHHHHHHhc
Confidence 446677788999999999963 22111 12667999999999999999887754444
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043953 148 --KSLSIAFAGIVIPFCIGAALHFVPIH 173 (868)
Q Consensus 148 --~~~~ia~~~~llp~~~g~~~~~~l~~ 173 (868)
+-..+++..+++.+++.++++++++.
T Consensus 87 g~~~~~~a~~~~~~~~~~~~~~~~~~g~ 114 (562)
T TIGR03802 87 GLREIILALVFAVSGLITVYALAKIFGL 114 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444444444445555555555443
No 93
>PRK04972 putative transporter; Provisional
Probab=92.54 E-value=1 Score=53.92 Aligned_cols=117 Identities=21% Similarity=0.180 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhh-cccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHh
Q 043953 56 FAIVAIRLFIILL-KPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVG 134 (868)
Q Consensus 56 lil~~~~l~~~l~-~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~G 134 (868)
+.+.+..+++.+- +.+++-...|-+++|+++|-.... .+ ..+.++|+.+|+|.+|
T Consensus 19 ~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~--~~----------------------~~~~~~gl~lF~~~vG 74 (558)
T PRK04972 19 VVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS--IN----------------------TDALNLGFMLFIFCVG 74 (558)
T ss_pred HHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC--CC----------------------hHHHHHHHHHHHHHHh
Confidence 3344444444332 556677778999999999963221 11 1235799999999999
Q ss_pred hccChHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHH-HHHhhccHHHHHHHHH
Q 043953 135 LEMDVSAV---KRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWA-ISLTITSFPDLARILS 205 (868)
Q Consensus 135 le~d~~~l---~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~ 205 (868)
++.-+..+ |+.+.+...+++...++++++++.++++++... ....| .+=+.|++|.+.....
T Consensus 75 ~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 75 VEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI---------GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHhhccccCcHHHHHHHH
Confidence 99987755 455556666777777777777777666654332 23333 3346677777666544
No 94
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.83 E-value=1.6 Score=52.37 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=74.9
Q ss_pred ccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHH---Hhhh
Q 043953 70 PLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAV---KRME 146 (868)
Q Consensus 70 rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l---~~~~ 146 (868)
++.+-...|-+++|+++|- ++...+ ..- -.| ......+.++|+.+|++.+|+.--...+ ++.+
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~--------~~~-~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G 477 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHP--------TFG-NIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMG 477 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCC--------cce-ecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 3444556678899999985 332222 000 022 4566789999999999999998877644 5566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHH-HHHhhccHHHHHHHHHh
Q 043953 147 KKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWA-ISLTITSFPDLARILSD 206 (868)
Q Consensus 147 k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 206 (868)
.+...+++.-.++|.++++.+++++.+. .....+| ++=+.|++|.+......
T Consensus 478 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 478 LTLFLLGIVVTILPLIITMLIGKYVLKY--------DPALLLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CHHHHHHHhhccCCCcHHHHHHHHh
Confidence 6677777777777877777777433322 1234444 44588888887776543
No 95
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=91.77 E-value=25 Score=39.06 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHhch--hhhHHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchh-hH
Q 043953 300 SVILLGVVVCGFIADGCGM--HSMAGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKT-KL 375 (868)
Q Consensus 300 ~~il~~~~~~~~lae~~g~--~~~lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~-~~ 375 (868)
.+.+..+.+.+++.+.+++ ..++|+++.+.++.. ......+-+.+ ..+..-+.=..+|.+++...+.... .+
T Consensus 158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l----~~~aqv~iG~~iG~~f~~~~l~~~~~~~ 233 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWL----VNAAQVLIGASIGSRFTRETLRELRRLL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 3444555666677777766 456777777766654 11111111122 2223333456788898876665432 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccc
Q 043953 376 FYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLK 432 (868)
Q Consensus 376 ~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ 432 (868)
...++..+..++.-.+..++..++.++++.+++ +.+.|-|.-|+.+.....+.+
T Consensus 234 ~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 234 PPALLSTLLLLALCALFAWLLSRLTGIDFLTAL---LATAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCCC
Confidence 445555666667778888888999999987753 335788888887766655544
No 96
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.49 E-value=1.5 Score=53.16 Aligned_cols=126 Identities=14% Similarity=0.137 Sum_probs=83.8
Q ss_pred CCCCeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHH
Q 043953 481 DTELRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINA 560 (868)
Q Consensus 481 ~~elriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 560 (868)
....|||+|+........+++-+..++...+.|. +++|+..-..+.. .....+++...
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~--~av~v~~~~~~~~--------------------~~~~~~~l~~~ 303 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLHAKW--TAVYVETPELHRL--------------------SEKEARRLHEN 303 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhCCCe--EEEEEeccccccc--------------------cHHHHHHHHHH
Confidence 4557999999998889999999988887776666 8999843222111 11122445555
Q ss_pred HHHHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCC-cceEE
Q 043953 561 FRHYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAP-CSIGI 639 (868)
Q Consensus 561 f~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~Ap-CsVgI 639 (868)
++-.++. |. +..+..+ .++.+.|.+.|++.++.-||+|-+.+.+..... .+++.+++++++| -+|-|
T Consensus 304 ~~Lae~l-Ga---e~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~------~~~l~~~L~~~~~~idv~i 371 (890)
T COG2205 304 LRLAEEL-GA---EIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLF------KGSLADRLAREAPGIDVHI 371 (890)
T ss_pred HHHHHHh-CC---eEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh------cccHHHHHHhcCCCceEEE
Confidence 5544443 33 2223344 699999999999999999999977664332111 1445688888888 55555
Q ss_pred E
Q 043953 640 L 640 (868)
Q Consensus 640 l 640 (868)
+
T Consensus 372 i 372 (890)
T COG2205 372 V 372 (890)
T ss_pred e
Confidence 4
No 97
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.97 E-value=14 Score=36.48 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcccCCC--chHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHh
Q 043953 57 AIVAIRLFIILLKPLHQP--RFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVG 134 (868)
Q Consensus 57 il~~~~l~~~l~~rl~~P--~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~G 134 (868)
.+.++.+.+.+++++|+| ..+|-++++.++.- .+..+. -+ .. .+.+++.+++-..+|
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~~------------~~----P~---~~~~~~qviiG~~iG 61 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLEI------------TL----PP---WLLALAQVVIGILIG 61 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCccC------------CC----CH---HHHHHHHHHHHHHHH
Confidence 456777888999999998 55555555555542 121111 01 12 344555666667789
Q ss_pred hccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043953 135 LEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHE 174 (868)
Q Consensus 135 le~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~ 174 (868)
.+++.+.+++..+-. ..++...++.++++...++++.+.
T Consensus 62 ~~f~~~~l~~~~~~~-~~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 62 SRFTREVLAELKRLW-PAALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred ccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887665433 334445555555666666655543
No 98
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=90.72 E-value=3.5 Score=45.50 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=73.0
Q ss_pred HHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHH
Q 043953 346 EFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVL 425 (868)
Q Consensus 346 ~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~ 425 (868)
.+.++++=|+.|.-+|..+|+..+... ....++.-..+-++- ..+++.+..+|++.+|+-.+|.+=+.-|-.++.+.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllan--P~~~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILAR--PWASITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhC--hHHHHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 445788889999999999999887653 221211122333333 33556667789999999999998777777777666
Q ss_pred hhccccccCchHHHHHHHHHHHHHHHhHHHHHHHhhhHhhHh
Q 043953 426 NEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLANKKAKRT 467 (868)
Q Consensus 426 ~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~ 467 (868)
+... -+++.+-.-.+---|+++ -.+-||+++.+-.+++|.
T Consensus 178 ~kLA-p~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER~ 217 (399)
T TIGR03136 178 LILA-KDLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYRG 217 (399)
T ss_pred Hhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHHc
Confidence 5422 222332222222233443 567788888877655553
No 99
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=90.01 E-value=13 Score=42.54 Aligned_cols=167 Identities=9% Similarity=0.049 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHhhcc--cCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHH
Q 043953 52 TELGFAIVAIRLFIILLKP--LHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFY 129 (868)
Q Consensus 52 l~i~lil~~~~l~~~l~~r--l~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~l 129 (868)
..+.+.+.++..+...++. +.+|..++-+++|+++.... ..... . .-..+.++.++++.+-++
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~~~---------~-----~~~~~~i~~I~~~sLdlf 286 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFKKF---------P-----WVAERAVSVIGNVSLSLF 286 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHhCc---------c-----ccchHHHHHHHHHHHHHH
Confidence 3455555566666666654 77999999999999998631 11111 0 011458999999999999
Q ss_pred HHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHhhhcccCCCcchHHHHHHHHHHhhccHHHH--HHHHHh
Q 043953 130 MFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALH-FVPIHEGITRESPNLGALFWAISLTITSFPDL--ARILSD 206 (868)
Q Consensus 130 lF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~-~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv--~~iL~e 206 (868)
+..+=..+++..+....-+.+.+.+.++++..+....+. ..+++.++. .-..+-++|..+-.|+.++. -.+-++
T Consensus 287 l~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yda---aV~~ag~~G~~lGatptaianm~av~~~ 363 (398)
T TIGR00210 287 LAIALMSLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDA---AVLCAGHCGFGLGATPTAIANMQAVTER 363 (398)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHH---HHHhcccccccccchHHHHHHHHHHHhc
Confidence 988888999999999999999999999998876554443 344444310 00112345555555544332 333344
Q ss_pred cCcccChhHHHHHHHHHHHHHHHHHHHHHH
Q 043953 207 VKLLHTDIGKTALSSAIVNDLSSWFLLVLV 236 (868)
Q Consensus 207 l~ll~s~~g~l~ls~a~v~D~~~~~ll~~~ 236 (868)
.|-.+.-.=-.=+-.+.+-|+...++....
T Consensus 364 yg~s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 364 FGPSHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred cCCCCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 554333333334556788888777666544
No 100
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=89.61 E-value=2.5 Score=46.15 Aligned_cols=114 Identities=24% Similarity=0.325 Sum_probs=72.3
Q ss_pred HHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhh
Q 043953 348 ISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNE 427 (868)
Q Consensus 348 ~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~ 427 (868)
.++++=|+-|.-+|..+|+..+... .+. +++-..+-++ +..+++.+..+|++.+|+..+|.+=+.-|-.++.+.+.
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~ 142 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSK 142 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHh
Confidence 4688888899999999999887653 222 2222223333 34466677778999999999999877777777766654
Q ss_pred ccccccCchHHHHHHHHHHHHHHHhHHHHHHHhhhHhhHh
Q 043953 428 GRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLANKKAKRT 467 (868)
Q Consensus 428 ~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~ 467 (868)
.. -+++.+-.-.+-.-|+++ -.+-||+++.+-.+++|.
T Consensus 143 LA-p~LlgpIaVaAYsYMaLv-PiiqPpimklLttkkeR~ 180 (360)
T PF03977_consen 143 LA-PHLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKKERK 180 (360)
T ss_pred hh-HHHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHHHHh
Confidence 22 122222222222223443 567888888877655543
No 101
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=89.46 E-value=10 Score=42.03 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=78.4
Q ss_pred cCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHH
Q 043953 71 LHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSL 150 (868)
Q Consensus 71 l~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~ 150 (868)
++.|.+++. ++|+++... |.-- |.--.+.++.+++...-+-||..|+.++.+.+++.++...
T Consensus 180 ~~nP~iia~-i~Gl~~~~~--~i~l---------------P~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~ 241 (321)
T TIGR00946 180 IKFPPLWAP-LLSVILSLV--GFKM---------------PGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAI 241 (321)
T ss_pred HhCCChHHH-HHHHHHHHH--hhcC---------------cHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHH
Confidence 567877774 455766642 2211 2222678999999999999999999999988887767766
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcCcccChhHHHHHHHHHHHHHHH
Q 043953 151 SIAFAGIVI-PFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILSDVKLLHTDIGKTALSSAIVNDLSS 229 (868)
Q Consensus 151 ~ia~~~~ll-p~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~ 229 (868)
...+.-.++ |.+. +.+..+++.. ....-....++...+++...++.+.--.+. +.+-+...++-+++
T Consensus 242 ~~~~~klil~P~i~-~~~~~~~~l~--------~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls 309 (321)
T TIGR00946 242 LALIVRFLVQPAVM-AGISKLIGLR--------GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLS 309 (321)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhCCC--------hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHH
Confidence 665555544 4443 4444444321 223344455555555556666554322233 33444444444444
Q ss_pred HHHHHH
Q 043953 230 WFLLVL 235 (868)
Q Consensus 230 ~~ll~~ 235 (868)
++.+.+
T Consensus 310 ~~tlp~ 315 (321)
T TIGR00946 310 LISLPL 315 (321)
T ss_pred HHHHHH
Confidence 444433
No 102
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=88.83 E-value=13 Score=36.62 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhchh--hhHHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchh-hHHHH
Q 043953 303 LLGVVVCGFIADGCGMH--SMAGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKT-KLFYL 378 (868)
Q Consensus 303 l~~~~~~~~lae~~g~~--~~lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~-~~~~~ 378 (868)
+......+++.+.+|+. .++|+++++.++.- ....-++-+.+. .+..-+.=..+|.+++...+.... .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~----~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLL----ALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHH----HHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34455556677777775 77888888887764 222112222222 223334456789999876665433 34445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhh
Q 043953 379 LLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNE 427 (868)
Q Consensus 379 ~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~ 427 (868)
+...+..++.-++..++..++.++++.+++ ++ ..|-|.-+......
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHH
Confidence 566666677788888889999999998875 34 47777777766554
No 103
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=88.57 E-value=31 Score=36.00 Aligned_cols=111 Identities=17% Similarity=0.109 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh
Q 043953 337 AINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNT 416 (868)
Q Consensus 337 ~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~ 416 (868)
++.+..-+++-+-.+..|+| =++..+.. .|..+..-++++.+.-++..++.++++|.+.. +-..+.+
T Consensus 61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~P 127 (230)
T COG1346 61 GQWINFLLGPATVALAVPLY-------KQRHLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLP 127 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHH-------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhcc
Confidence 45555666666667777765 23444554 57777777888888889999999999998764 2344689
Q ss_pred hhhHHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHh
Q 043953 417 KGVMALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLA 460 (868)
Q Consensus 417 rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l 460 (868)
|....-+...+..+.|-+++-+-..++++-++-..+.+++++++
T Consensus 128 kSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 128 KSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988888888888888877666666666666444455555554
No 104
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=87.27 E-value=42 Score=35.30 Aligned_cols=111 Identities=17% Similarity=0.105 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh
Q 043953 337 AINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNT 416 (868)
Q Consensus 337 ~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~ 416 (868)
++.+..-+.+-+-.+..|+| -+...+.. .|..+++-+++..+.-++++++.++++|.+.. +-..|.+
T Consensus 64 ~~~l~~lLgPAtVALAvPLY-------~q~~~lk~--~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~p 130 (232)
T PRK04288 64 GDIISFFLEPATIAFAIPLY-------KKRDVLKK--YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLP 130 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhh
Confidence 33444455666666677765 23344444 56666667777777888888999999998763 3445689
Q ss_pred hhhHHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHh
Q 043953 417 KGVMALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLA 460 (868)
Q Consensus 417 rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l 460 (868)
|....-+...+..+.|-+.+-.-..++++-++-..+.+++++++
T Consensus 131 KSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 131 QAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988888888888887766555555666666444455555554
No 105
>PRK10490 sensor protein KdpD; Provisional
Probab=87.25 E-value=6.6 Score=50.01 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=78.3
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEF 741 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~ 741 (868)
..||+|...|+|..+-.+..|.|||+.-++.+++++|.+++..... .+..+.+.+. + ++
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~-------------------~~~~~~l~~~-~-~l 308 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLP-------------------EKKRRAILSA-L-RL 308 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCC-------------------HHHHHHHHHH-H-HH
Confidence 5689999999999999999999999999999999999765321100 0222222222 2 24
Q ss_pred HhhcCCCCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCcc
Q 043953 742 RFKTMYDSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHA 819 (868)
Q Consensus 742 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~ 819 (868)
.++... .+.... +.++.+.|-+. ..+.+.+|+|++.+. -| + -.|.+.|.|... ..+.
T Consensus 309 A~~lGa----~~~~~~---~~dva~~i~~~A~~~~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~--~~~i 367 (895)
T PRK10490 309 AQELGA----ETATLS---DPAEEKAVLRYAREHNLGKIIIGRRASR---------RW--W-RRESFADRLARL--GPDL 367 (895)
T ss_pred HHHcCC----EEEEEe---CCCHHHHHHHHHHHhCCCEEEECCCCCC---------CC--c-cCCCHHHHHHHh--CCCC
Confidence 443322 122222 33444444433 456899999999763 24 1 247899988885 4556
Q ss_pred cEEEEe
Q 043953 820 SVLVVQ 825 (868)
Q Consensus 820 SVLVvq 825 (868)
.|.||-
T Consensus 368 di~iv~ 373 (895)
T PRK10490 368 DLVIVA 373 (895)
T ss_pred CEEEEe
Confidence 888883
No 106
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=86.74 E-value=7.3 Score=42.57 Aligned_cols=48 Identities=8% Similarity=0.119 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043953 125 GLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPI 172 (868)
Q Consensus 125 gl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~ 172 (868)
++.|+.|..|..+|++.+.+.+.+.+.+++..+.+++..++.+..+++
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg 244 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVG 244 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788889999999999999999999999999999999999988887774
No 107
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=86.62 E-value=8.9 Score=38.90 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHH-------
Q 043953 55 GFAIVAIRLFIILLKPLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLT------- 127 (868)
Q Consensus 55 ~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~------- 127 (868)
+++..++.++..-+.+=|++.----|+.|+++...+ |.... -.+....+..++.+|++
T Consensus 22 G~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg--------------G~kGlaDi~lfsGiglmGGaMlRD 86 (254)
T TIGR00808 22 GLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG--------------GEKGLADIAIFGGFGLMGGAMLRD 86 (254)
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC--------------CccccchhhhhcchhhhhhHHHHH
Confidence 333334444444344445666666788888876421 11111 01223334455555443
Q ss_pred HHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043953 128 FYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEG 175 (868)
Q Consensus 128 ~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~ 175 (868)
|-.-..+.|.|.+++||.+..-..--+.+.++||+.|..+++.++...
T Consensus 87 fAIvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 87 LAIVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred HHHHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 233457889999999999988888888999999999999999987653
No 108
>PRK04972 putative transporter; Provisional
Probab=86.62 E-value=6.9 Score=46.88 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=76.4
Q ss_pred cCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHH---Hhhhh
Q 043953 71 LHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAV---KRMEK 147 (868)
Q Consensus 71 l~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l---~~~~k 147 (868)
+++-.--|-+++|+++|- ++...+ .... .| ......+.++|+.+|+..+|+.--.+.+ ++.+.
T Consensus 408 ~~LG~agG~L~~gl~~g~--~~~~~~--------~~~~-~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~ 473 (558)
T PRK04972 408 FGIGNAAGLLFAGIMLGF--LRANHP--------TFGY-IP---QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGG 473 (558)
T ss_pred eeccccHHHHHHHHHHHh--ccccCC--------Ccee-eC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhH
Confidence 344455678999999985 444433 1111 22 4667889999999999999998766543 55566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHH-HHHhhccHHHHHHHHHh
Q 043953 148 KSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWA-ISLTITSFPDLARILSD 206 (868)
Q Consensus 148 ~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 206 (868)
+.+.++..-.++|.++++.+++++.+. .....+| ++=+.|++|.+......
T Consensus 474 ~~~~~g~~~t~~~~~~~~~~~~~~~k~--------~~~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 474 QMLIAGLIVSLVPVVICFLFGAYVLRM--------NRALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHhCCCCCcHHHHHHHhh
Confidence 777777888888888888888555433 1234444 45578888877665443
No 109
>COG2985 Predicted permease [General function prediction only]
Probab=85.80 E-value=6.4 Score=45.10 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhccChHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHH-HHHhhccHH
Q 043953 123 SLGLTFYMFLVGLEMDVSA---VKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWA-ISLTITSFP 198 (868)
Q Consensus 123 ~lgl~~llF~~Gle~d~~~---l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~ 198 (868)
++|+++|.+.+|+|--+.. +|+.+++-..++++- ++.+..+++++...+.. ...+..| .+-+.||+|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~~-----~~~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFGI-----DLGLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcCC-----CHHHhhhhhcccccCCc
Confidence 8999999999999998764 467777776666554 33444444444443321 1222222 223555555
Q ss_pred HH---HHHHHhcCc
Q 043953 199 DL---ARILSDVKL 209 (868)
Q Consensus 199 vv---~~iL~el~l 209 (868)
.. ..+|+|++.
T Consensus 133 ~L~aa~~~L~~lg~ 146 (544)
T COG2985 133 GLGAAQDILRELGA 146 (544)
T ss_pred hhHHHHHHHHhhcc
Confidence 54 445777765
No 110
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=85.08 E-value=1.4 Score=50.69 Aligned_cols=82 Identities=23% Similarity=0.417 Sum_probs=56.8
Q ss_pred chhHHHHHHHhcCccEEEec---CCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecCCCC-Ccc-----cccccc
Q 043953 585 IHEDIFEIAEDKVVALILIP---FHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDRGIG-SAV-----ITSAQS 655 (868)
Q Consensus 585 m~~dI~~~A~e~~adlIIlp---~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~-~~~-----~~~~~~ 655 (868)
-.++||.+|+++++|+|++| ||........+ +..++.+-+.-+..-||..-++-|.+.- +.. +...+
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L---~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~Dp- 115 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSRKTL---HRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDP- 115 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccHHHH---HHHHHHHHHHccCCCceeeEEecccceeccccccceecccCC-
Confidence 36899999999999999999 78765443322 3345556677788899999999888643 111 11111
Q ss_pred ccccCccceEEEeecc--CcchH
Q 043953 656 SLHGRQGLKLCMLFIG--GPDDR 676 (868)
Q Consensus 656 ~~~~~~~~~I~v~f~G--G~ddr 676 (868)
-.+|.+|.|+ |.||.
T Consensus 116 ------NlNIsIPVFsIHGNHDD 132 (646)
T KOG2310|consen 116 ------NLNISIPVFSIHGNHDD 132 (646)
T ss_pred ------CcceeeeeEEeecCCCC
Confidence 3488888886 76664
No 111
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=83.63 E-value=26 Score=40.55 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC---CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHH
Q 043953 301 VILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN---GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFY 377 (868)
Q Consensus 301 ~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~---~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~ 377 (868)
+++.+..+++.+++.+..+.+....+.|++..- ........-.-|.+ ..+++|+-....|+++|...+.. .|..
T Consensus 13 lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~-~~l~l~ilLf~~g~~l~~~~l~~--~~~~ 89 (429)
T COG0025 13 LILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELF-LVLFLAILLFAGGLELDLRELRR--VWRS 89 (429)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHH-HHHHHHHHHHHhHhcCCHHHHHH--hHHH
Confidence 333444444455555555444444444443331 11111111111222 26778888888899999999877 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhhhhhHHHHH
Q 043953 378 LLLTTIVATSAKILSTVLVALCY--GMPVRDGVALGGLMNTKGVMALIV 424 (868)
Q Consensus 378 ~~~ii~~~~~~K~l~~~l~~~~~--~~~~~e~~~lg~~m~~rG~v~lil 424 (868)
+..+.....+...++.....++. ++|+..++.+|..+++-.-+.+.-
T Consensus 90 I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 90 ILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 55555566666666666666665 899999999999988877665543
No 112
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=83.39 E-value=20 Score=39.77 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCc--hHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHH
Q 043953 52 TELGFAIVAIRLFIILLKPLHQPR--FIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFY 129 (868)
Q Consensus 52 l~i~lil~~~~l~~~l~~rl~~P~--iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~l 129 (868)
.++.+++.++.+.+++++++|+|. ++|-++++.++.-. +.... -+ ...+..++++ ++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~--~~~~~------------~~----P~~l~~~aqv---~i 213 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLF--GGPSF------------SL----PPWLVNAAQV---LI 213 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--hCCCC------------CC----CHHHHHHHHH---HH
Confidence 345566677888999999999875 45555555554432 11111 11 2344444444 45
Q ss_pred HHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043953 130 MFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIH 173 (868)
Q Consensus 130 lF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~ 173 (868)
=-.+|.+++...+++..| .+..++...++-+.++.+.++.+..
T Consensus 214 G~~iG~~f~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~ 256 (318)
T PF05145_consen 214 GASIGSRFTRETLRELRR-LLPPALLSTLLLLALCALFAWLLSR 256 (318)
T ss_pred HHHHHccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556799999988876554 3334444444444445555554443
No 113
>PRK03818 putative transporter; Validated
Probab=83.17 E-value=28 Score=41.71 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=70.6
Q ss_pred hHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHh----hhhhHHH
Q 043953 76 FIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKR----MEKKSLS 151 (868)
Q Consensus 76 iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~----~~k~~~~ 151 (868)
.-|-+++|+++|- ++...+ .. +-.| ......+.++|+.+|+..+|+.--...+.. .+.+...
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~--------~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~ 468 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGK--------LY-WFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIG 468 (552)
T ss_pred chHHHHHHHHHHh--ccCCCC--------ce-eecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHH
Confidence 4578999999985 333222 11 1123 456778899999999999999887765533 3556677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHH-HHHhhccHHHHHHH
Q 043953 152 IAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWA-ISLTITSFPDLARI 203 (868)
Q Consensus 152 ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~i 203 (868)
+|....++|.++++.+++++.+. .....+| .+=+.|++|.+...
T Consensus 469 ~g~~v~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 469 YGFLITAVPLLIVGILARMLAKM--------NYLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHhccCCCcHHHHHH
Confidence 77777788888888886544332 1234444 45588888877665
No 114
>COG3329 Predicted permease [General function prediction only]
Probab=81.39 E-value=33 Score=37.10 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=78.4
Q ss_pred HHHHHhc--hhhhHHHHHHHhhcCC--Cc--hhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHH
Q 043953 311 FIADGCG--MHSMAGGFIFGLIIPN--GE--LAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIV 384 (868)
Q Consensus 311 ~lae~~g--~~~~lGafvaGl~l~~--~~--~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~ 384 (868)
++.+..| +++.+.-|+.|++++- .. +...+.+.+. -.++-..=.--|+.+.-+.+.. ....++.-+.+
T Consensus 7 fl~~f~~nL~sP~llFf~~Gmlia~~ksdl~iP~~i~~~ls----lyLL~aIG~kGGveir~snl~a--~v~~~~~~~aL 80 (372)
T COG3329 7 FLMDFVGNLLSPTLLFFILGMLIAAFKSDLEIPEAIYQALS----LYLLLAIGFKGGVEIRNSNLTA--MVLPVALGVAL 80 (372)
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHhccccCchHHHHHHH----HHHHHHHhcccceeeecCCcch--hHHHHHHHHHH
Confidence 4444444 4778888888888775 22 2222222221 1111111222344444444444 34445555666
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccccCchHHHHHH
Q 043953 385 ATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLKAIDNILMAAM 442 (868)
Q Consensus 385 ~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~l 442 (868)
.++.-++..++..++.+++..|+...+-..+.-..++++.+...++..-+..+.|...
T Consensus 81 ~~li~~ia~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 81 GFLIVFIAYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHHHHHHHHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 6777788888888888999999999998888888888888877777666666666544
No 115
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=79.85 E-value=0.57 Score=53.13 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchh--hHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHH
Q 043953 303 LLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELA--INIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLL 380 (868)
Q Consensus 303 l~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~--~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ 380 (868)
++.+++...+.+.++++.++|-.++|+++....+. +.-.+..+.+ ..+.+++.....|+++|...+... +.....
T Consensus 5 i~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~--~~~~~~ 81 (380)
T PF00999_consen 5 ILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRN--WRRALA 81 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred eehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccccc--cccccc
Confidence 33444555578899999999999999999884333 1113444555 688888888899999999988763 444444
Q ss_pred HHHHHHHHHHHH-HHHHHH---HhCCChHHHHHHHHHHhhhh
Q 043953 381 TTIVATSAKILS-TVLVAL---CYGMPVRDGVALGGLMNTKG 418 (868)
Q Consensus 381 ii~~~~~~K~l~-~~l~~~---~~~~~~~e~~~lg~~m~~rG 418 (868)
..+..++.-++. .+.... ..++++.+++.+|..+.+-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp --------------------------------TTHHHHTT--
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 444444444444 444442 46888999988888876543
No 116
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=79.59 E-value=8.8 Score=41.40 Aligned_cols=116 Identities=12% Similarity=0.142 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC--Cch--hhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhh
Q 043953 299 ISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN--GEL--AINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTK 374 (868)
Q Consensus 299 ~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~--~~~--~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~ 374 (868)
....+.++|+.+.++..+.+++..|=.++|++... +.+ .+.+...+..+ =.-+....+|+++.+..+.....
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAel----GViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAEL----GVILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHh----hHHHHHHhcchheeHHHHhhHHH
Confidence 44556778889999999999999999999999885 333 24455455554 34445567899988877765434
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhH
Q 043953 375 LFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVM 420 (868)
Q Consensus 375 ~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v 420 (868)
|.+-..+ .-+..-..-.+..++..|+++...+..|+.++.-.++
T Consensus 87 iAipgAl--~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV 130 (408)
T COG4651 87 IAIPGAL--AQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTV 130 (408)
T ss_pred HhcchHH--HHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHH
Confidence 4321111 1111111122334566788888888888887766554
No 117
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=77.33 E-value=12 Score=40.89 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=69.4
Q ss_pred HHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHHhhhhh
Q 043953 346 EFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGM------PVRDGVALGGLMNTKGV 419 (868)
Q Consensus 346 ~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~------~~~e~~~lg~~m~~rG~ 419 (868)
.+.++++=|+.|.-+|..+|+..+...+ + ..++-..+-++- ..+++.+.++|+ +.+|+..+|.+=+.-|-
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP-~--~~llGaaAQ~Gi-F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANP-R--TLLLGAAAQFGI-FATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhCh-H--HHHHHHHHHhhH-HHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 4457888899999999999998876642 1 222223333333 335566666788 77999999887666776
Q ss_pred HHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHhhhHhhHh
Q 043953 420 MALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLANKKAKRT 467 (868)
Q Consensus 420 v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~ 467 (868)
.++.+.+... -+++.+-.-.+---|+++ -.+-||+++.+-.+++|.
T Consensus 135 t~If~s~~la-p~Llg~IaVAAYsYMaLv-PiiqPpimklLttkkeR~ 180 (354)
T TIGR01109 135 TAIYLSGKLA-PELLAAIAVAAYSYMALV-PIIQPPIMKALTSEKERK 180 (354)
T ss_pred hhhhhHhhhh-hHHHHHHHHHHHHHHHHH-hcccchHHHhhcChHHhc
Confidence 6666554322 122222222222223333 566788888877554443
No 118
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=77.29 E-value=1.2e+02 Score=33.20 Aligned_cols=84 Identities=10% Similarity=0.107 Sum_probs=58.7
Q ss_pred HHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhc
Q 043953 349 SGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEG 428 (868)
Q Consensus 349 ~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~ 428 (868)
..+++=.|++.++.-.|++.+...+.|. +..+...+...+..+..++.++.+..+-...++. |.-|-.+.-....+
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~taP~~i---~~gf~il~~h~~v~f~~~KlF~~dL~~i~~AslA-niGG~~sAp~~A~A 350 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIVTAPLII---LFGFIILISHLAVSFAAGKLFRVDLEEILLASLA-NIGGPTSAPAMAIA 350 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-ccCCccchhHHHhh
Confidence 4556677899999999998887643332 3333444556677778889999988776655554 88888888777777
Q ss_pred cccccCch
Q 043953 429 RSLKAIDN 436 (868)
Q Consensus 429 ~~~~ii~~ 436 (868)
.+...+..
T Consensus 351 ~nr~lv~~ 358 (384)
T COG5505 351 KNRELVAP 358 (384)
T ss_pred cCchhcch
Confidence 77655544
No 119
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=76.64 E-value=14 Score=41.95 Aligned_cols=104 Identities=17% Similarity=0.299 Sum_probs=58.8
Q ss_pred hHHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 321 MAGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLR-TNFLELFSKTKLFYLLLTTIVATSAKILSTVLVAL 398 (868)
Q Consensus 321 ~lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~-~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~ 398 (868)
++...++|.+..+ .-+..+-.+.+..++..+++|.+....=.+ .+...+.+ ++.+.+..++..+.-++..++..+
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS---LWFIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666665 556677778888899999999985444444 33433333 333444444444444556666677
Q ss_pred HhCCChHHHHH--HHHHHhhhhhHHHHHHhh
Q 043953 399 CYGMPVRDGVA--LGGLMNTKGVMALIVLNE 427 (868)
Q Consensus 399 ~~~~~~~e~~~--lg~~m~~rG~v~lil~~~ 427 (868)
+++.+.+++.. ++...+.-|.+.+-+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~ 116 (385)
T PF03547_consen 86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQA 116 (385)
T ss_pred hcCCCcccceEEEecccCCcchhhHHHHHHH
Confidence 77776655433 232334445555544443
No 120
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=75.92 E-value=16 Score=36.78 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=32.1
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEee
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYV 699 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~ 699 (868)
||++.+.||.|+--++.++.+.++..+.+++++++.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 589999999999999999999887777788888885
No 121
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=75.45 E-value=39 Score=38.34 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhc--ccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHH
Q 043953 54 LGFAIVAIRLFIILLK--PLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMF 131 (868)
Q Consensus 54 i~lil~~~~l~~~l~~--rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF 131 (868)
+.+.+.++..+...++ .+.+|..++-+++|+++.... ..... .+ -..+..+.++++.+-+++.
T Consensus 226 i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~-~~~~~---------~~-----id~~~i~~I~~~sL~~fl~ 290 (368)
T PF03616_consen 226 ILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNIL-DKTGK---------YK-----IDRKTIDRISGISLDLFLA 290 (368)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHH-HHhCc---------cc-----CCHHHHHHHHHHHHHHHHH
Confidence 3444444555544444 366899999999999987521 11111 00 1257789999999999998
Q ss_pred HHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHhhhcc
Q 043953 132 LVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAAL-HFVPIHEG 175 (868)
Q Consensus 132 ~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~-~~~l~~~~ 175 (868)
.+=..+++..+.+..-+.+.+-+.+.++..+....+ ...+++.+
T Consensus 291 ~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdy 335 (368)
T PF03616_consen 291 MALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDY 335 (368)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCh
Confidence 888899999999998888887777777775554443 33554443
No 122
>PRK09903 putative transporter YfdV; Provisional
Probab=74.76 E-value=51 Score=36.37 Aligned_cols=90 Identities=9% Similarity=0.009 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHh
Q 043953 115 TVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGI-VIPFCIGAALHFVPIHEGITRESPNLGALFWAISLT 193 (868)
Q Consensus 115 ~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~-llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls 193 (868)
.+.++.+++...-+-||..|..+....++.. ++.+...+.-. +.|++. +...++++. + ....-....++
T Consensus 197 ~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~P~i~-~~~~~~~~l--~------~~~~~v~vl~a 266 (314)
T PRK09903 197 DPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILMPLAL-LLVGMACHL--N------SEHLQMMVLAG 266 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHH-HHHHHHcCC--C------cHHHHHHHHHH
Confidence 6788999999999999999998877665443 33333333333 346544 333333321 1 23344556666
Q ss_pred hccHHHHHHHHHhcCcccChh
Q 043953 194 ITSFPDLARILSDVKLLHTDI 214 (868)
Q Consensus 194 ~Ts~~vv~~iL~el~ll~s~~ 214 (868)
.+.+++.+.++.+.--.+.+.
T Consensus 267 a~P~a~~~~i~A~~y~~~~~~ 287 (314)
T PRK09903 267 ALPPAFSGIIIASRFNVYTRT 287 (314)
T ss_pred cccHHHHHHHHHHHHcccHHH
Confidence 666666777765533234443
No 123
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=74.66 E-value=34 Score=39.05 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=54.5
Q ss_pred HHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHH
Q 043953 344 TEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMAL 422 (868)
Q Consensus 344 l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~l 422 (868)
+..++..+.+.+...-.|++++++.+... .|..+.+-.+..++.-.+....+.+.++++|-|++.+|...+..-..++
T Consensus 59 ~Ay~vg~lALaiILfdgG~~T~lss~r~a-~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAV 136 (574)
T COG3263 59 FAYMVGNLALAIILFDGGFGTQLSSFRVA-AGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAV 136 (574)
T ss_pred HHHHHHHHHHHHHhhcCccCCcHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHH
Confidence 34445666777777778999998877654 4554445555555566666677788899999999999988665544333
No 124
>COG2431 Predicted membrane protein [Function unknown]
Probab=74.03 E-value=43 Score=35.90 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhccC---hHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043953 118 LETFSSLGLTFYMFLVGLEMD---VSAVK-RMEKKSLSIAFAGIVIPFCIGAALHFVPIH 173 (868)
Q Consensus 118 l~~la~lgl~~llF~~Gle~d---~~~l~-~~~k~~~~ia~~~~llp~~~g~~~~~~l~~ 173 (868)
.+...+..+.+++|.+|.++. ....+ .--|+....++...+-..+.|...++++..
T Consensus 130 ~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ilssliGG~iaa~~l~l 189 (297)
T COG2431 130 PENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLLSSLIGGLIAAFLLDL 189 (297)
T ss_pred chhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678889999999999887 22111 223666777776666666666666666653
No 125
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=73.70 E-value=3.5 Score=35.81 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=38.3
Q ss_pred CchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceE
Q 043953 584 SIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIG 638 (868)
Q Consensus 584 ~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVg 638 (868)
.+++.+.+.|++.++|.|++|.|.....+..+.+. ....++.++++|+|.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~-----~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS-----ANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch-----hhhhhcccccCCcee
Confidence 78999999999999999999999876554443320 223688899999873
No 126
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=73.23 E-value=6.2 Score=40.29 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=58.3
Q ss_pred HHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 322 AGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKT-KLFYLLLTTIVATSAKILSTVLVALC 399 (868)
Q Consensus 322 lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~-~~~~~~~ii~~~~~~K~l~~~l~~~~ 399 (868)
++++++|+++.. ........++.... .+..-+|++-+.+.-|-..+.+-. .-...+.+-+...++-+++.++.+++
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~~~~~~~--~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLIDKISTY--ALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhcccccccccHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665 22111222232222 233334444433333422222211 11235667777888999999999999
Q ss_pred hCCChHHHHHHHHHHhhhhhHHHHHHh
Q 043953 400 YGMPVRDGVALGGLMNTKGVMALIVLN 426 (868)
Q Consensus 400 ~~~~~~e~~~lg~~m~~rG~v~lil~~ 426 (868)
.+++++|++.++..++=-..-...+..
T Consensus 80 l~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred hcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 999999999998876555544444443
No 127
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=72.85 E-value=8.8 Score=42.47 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=68.5
Q ss_pred HHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHhhhhhH
Q 043953 346 EFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALC-----YGMPVRDGVALGGLMNTKGVM 420 (868)
Q Consensus 346 ~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~-----~~~~~~e~~~lg~~m~~rG~v 420 (868)
.+.++++=|+.|.-+|..+|+..+...+ ..+++-..+-++-+.....+..+ .|++.+|+..+|.+=+.-|-.
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP---~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15475 130 AIGSGVAPLVIFMGVGAMTDFGPLLANP---RTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCH---HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 3456888889999999999998876532 12222233333333322222222 389999999999886777777
Q ss_pred HHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHhhhHhhHh
Q 043953 421 ALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLANKKAKRT 467 (868)
Q Consensus 421 ~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~ 467 (868)
++.+.+... -+++.+-.-.+---|+++ -.+-||+++.+-.+++|.
T Consensus 207 sIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~ 251 (433)
T PRK15475 207 AIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTETERK 251 (433)
T ss_pred HHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhC
Confidence 776665322 122222222222223444 567788888877555443
No 128
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=72.48 E-value=9 Score=42.39 Aligned_cols=116 Identities=19% Similarity=0.178 Sum_probs=67.9
Q ss_pred HHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHhhhhhHH
Q 043953 347 FISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALC-----YGMPVRDGVALGGLMNTKGVMA 421 (868)
Q Consensus 347 ~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~-----~~~~~~e~~~lg~~m~~rG~v~ 421 (868)
+.++++=|+.|.-+|..+|+..+...+ ..+++-..+-++-++....+..+ .|++.+|+..+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP---~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANP---RTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCH---HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Confidence 356788888999999999998876532 12222233333333322222222 3899999999998867777777
Q ss_pred HHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHhhhHhhHh
Q 043953 422 LIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLANKKAKRT 467 (868)
Q Consensus 422 lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~ 467 (868)
+.+.+... -+++.+-.-.+---|+++ -.+-||+++.+-.+++|.
T Consensus 208 IfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~ 251 (433)
T PRK15477 208 IYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKERK 251 (433)
T ss_pred HHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhC
Confidence 76665322 122222222222223443 567788888877554443
No 129
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=72.47 E-value=9 Score=42.39 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=68.3
Q ss_pred HHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHhhhhhH
Q 043953 346 EFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALC-----YGMPVRDGVALGGLMNTKGVM 420 (868)
Q Consensus 346 ~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~-----~~~~~~e~~~lg~~m~~rG~v 420 (868)
.+.++++=|+.|.-+|..+|+..+...+ ..+++-..+-++-++....+..+ .|++.+|+..+|.+=+.-|-.
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP---~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15476 130 AIGSGVAPLVIFMGVGAMTDFGPLLANP---RTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCH---HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 3356888889999999999998876532 12222233333333322222222 389999999999886777777
Q ss_pred HHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHhhhHhhHh
Q 043953 421 ALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLANKKAKRT 467 (868)
Q Consensus 421 ~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~ 467 (868)
++.+.+... -+++.+-.-.+---|+++ -.+-||+++.+-.+++|.
T Consensus 207 sIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~ 251 (433)
T PRK15476 207 AIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKERK 251 (433)
T ss_pred HHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhC
Confidence 776665322 122222222222223443 567788888877554443
No 130
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=71.51 E-value=14 Score=37.30 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=32.3
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeec
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYN 701 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~ 701 (868)
+|+|-+.||+|+--.|.+..++.+..+.+++++++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~ 38 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHG 38 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-S
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 58999999999999999999999998999999999643
No 131
>PRK10711 hypothetical protein; Provisional
Probab=70.16 E-value=1.5e+02 Score=31.26 Aligned_cols=109 Identities=13% Similarity=0.203 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhh
Q 043953 339 NIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKG 418 (868)
Q Consensus 339 ~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG 418 (868)
-+..-+.+-+-.+..|+| =+...+.. .|..+++-++++.+.-++++++.++++|.+.. +...|.+|.
T Consensus 61 ~l~~lLgPAtVALAvPLY-------~q~~~lk~--~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkS 127 (231)
T PRK10711 61 VLNDLLQPAVVALAFPLY-------EQLHQIRA--RWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKS 127 (231)
T ss_pred HHHhhhhHHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhh
Confidence 333445555556666654 23334444 46666666677777888888999999998654 344568999
Q ss_pred hHHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHh
Q 043953 419 VMALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLA 460 (868)
Q Consensus 419 ~v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l 460 (868)
...-+...+..+.|-+.+-.-..++++-++-..+.+++++++
T Consensus 128 VTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 128 VTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888887888888777655555555555555444445555554
No 132
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=69.79 E-value=27 Score=42.84 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=76.2
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhh-hhhHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKE-KELDDEFINE 740 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~d~~~~~~ 740 (868)
..||+|-..|++...--+..|.|||+.-++..|++++..++..... +.+ +.+++ .+ +
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~--------------------~~~~~~l~~-~~-~ 305 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLS--------------------EKEARRLHE-NL-R 305 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccccc--------------------HHHHHHHHH-HH-H
Confidence 4699999999999999999999999999999999999876532111 222 22222 11 2
Q ss_pred HHhhcCCCCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCc
Q 043953 741 FRFKTMYDSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAH 818 (868)
Q Consensus 741 ~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~ 818 (868)
+.++.... . +.+. +.++...|-+- ..+.--+|+||+++. .|-+.-. |.+.|.|+.. ...
T Consensus 306 Lae~lGae----~--~~l~-~~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~--~~~ 366 (890)
T COG2205 306 LAEELGAE----I--VTLY-GGDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLFK-GSLADRLARE--APG 366 (890)
T ss_pred HHHHhCCe----E--EEEe-CCcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhc--CCC
Confidence 22222221 1 1222 34444444433 345778999999864 3432222 8999999984 334
Q ss_pred ccEEEE
Q 043953 819 ASVLVV 824 (868)
Q Consensus 819 ~SVLVv 824 (868)
..|-+|
T Consensus 367 idv~ii 372 (890)
T COG2205 367 IDVHIV 372 (890)
T ss_pred ceEEEe
Confidence 455555
No 133
>PRK09903 putative transporter YfdV; Provisional
Probab=69.29 E-value=1.2e+02 Score=33.47 Aligned_cols=133 Identities=9% Similarity=0.024 Sum_probs=73.2
Q ss_pred hhHHHHHHHhhcCC--CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 320 SMAGGFIFGLIIPN--GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVA 397 (868)
Q Consensus 320 ~~lGafvaGl~l~~--~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~ 397 (868)
+.+-+.++|+++.- -+..+.+.+-++.+ .+...|+-...+|+++....+.. .+. .....+...+.-++.+++.+
T Consensus 174 P~iia~~~gl~~~l~~i~lP~~i~~~l~~l-g~~~~PlaL~~iG~~L~~~~~~~--~~~-~~~~~~~Kli~~P~i~~~~~ 249 (314)
T PRK09903 174 PVVWAPVLATILVLVGVKIPAAWDPTFNLI-AKANSGVAVFAAGLTLAAHKFEF--SAE-IAYNTFLKLILMPLALLLVG 249 (314)
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccc--cHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332 23334556666666 78889999999999986554432 121 12223334444455666666
Q ss_pred HHhCCChHHHHHHHHHH--hhhhhHHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043953 398 LCYGMPVRDGVALGGLM--NTKGVMALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLAN 461 (868)
Q Consensus 398 ~~~~~~~~e~~~lg~~m--~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~ 461 (868)
..++++..+.. ...++ .|-+....+++. +.| .+++.-+..+..+++.+.++-|+.-++.
T Consensus 250 ~~~~l~~~~~~-v~vl~aa~P~a~~~~i~A~---~y~-~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 250 MACHLNSEHLQ-MMVLAGALPPAFSGIIIAS---RFN-VYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHcCCCcHHHH-HHHHHHcccHHHHHHHHHH---HHc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777654332 22222 344544444443 333 3555556666666666888888877654
No 134
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=68.65 E-value=30 Score=38.93 Aligned_cols=108 Identities=9% Similarity=0.138 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhcc--cCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHH
Q 043953 53 ELGFAIVAIRLFIILLKP--LHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYM 130 (868)
Q Consensus 53 ~i~lil~~~~l~~~l~~r--l~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~ll 130 (868)
-+++.+.++.....+++. +.+|..++-+++|+++.... ..... .+ + ..+..+.++++++.+++
T Consensus 226 ~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~-~~~~~---------~~-v----~~~~v~~ig~vsL~lfl 290 (404)
T COG0786 226 IIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL-DLLKK---------YR-V----FRRAVDVIGNVSLSLFL 290 (404)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH-HHhcc---------cc-c----cHHHHHHHhhhHHHHHH
Confidence 344444455555555553 66899999999999998521 11111 01 1 26788999999999998
Q ss_pred HHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHHhhhcc
Q 043953 131 FLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAA-LHFVPIHEG 175 (868)
Q Consensus 131 F~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~-~~~~l~~~~ 175 (868)
=.+=+.+.+-.+-..+-..+++-..+.++..+..+. +...+++.+
T Consensus 291 amALmSlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~Y 336 (404)
T COG0786 291 AMALMSLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLMGKNY 336 (404)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 777778888888777777777777777766444443 334455444
No 135
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=68.51 E-value=1.9e+02 Score=31.85 Aligned_cols=135 Identities=14% Similarity=0.104 Sum_probs=84.0
Q ss_pred hhhhHHHHHHHhhcCC--CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 043953 318 MHSMAGGFIFGLIIPN--GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVL 395 (868)
Q Consensus 318 ~~~~lGafvaGl~l~~--~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l 395 (868)
.++.+=|.++|+++.- -+....+.+-++.+ .+...|+-...+|+.++...... .+.......+..++.-++.++.
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~ 257 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAG 257 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHH
Confidence 4666777788887775 33445666666666 78899999999999998766643 3444555566667677777777
Q ss_pred HHHHhCCChHHHH--HHHHHHhhhhhHHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHh
Q 043953 396 VALCYGMPVRDGV--ALGGLMNTKGVMALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLA 460 (868)
Q Consensus 396 ~~~~~~~~~~e~~--~lg~~m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l 460 (868)
....++.+..... .+-.. .|-+....+++. +.+ .+++..+..+....+.++++-|+..++
T Consensus 258 ~~~~~~l~~~~~~~~vl~aa-~P~a~~~~i~A~---~y~-~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 258 ISKLIGLRGLELSVAILQAA-LPGGAVAAVLAT---EYE-VDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHhCCChHHHHHHHHHHc-CChhhHHHHHHH---HhC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777654432 22222 344444444333 333 245555555555555577777776554
No 136
>PRK12342 hypothetical protein; Provisional
Probab=67.17 E-value=19 Score=38.55 Aligned_cols=31 Identities=16% Similarity=-0.043 Sum_probs=25.6
Q ss_pred eeccCcchHHHHHHHHHhhcCCCeEEEEEEee
Q 043953 668 LFIGGPDDREALFYAWRMAGKPGVNLTVVRYV 699 (868)
Q Consensus 668 ~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~ 699 (868)
++.=.|.|+-|++.|.|+.+ .+.++|++.+=
T Consensus 30 ~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~G 60 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLAT-DGDEIAALTVG 60 (254)
T ss_pred CccCChhhHHHHHHHHHHhh-cCCEEEEEEeC
Confidence 33446999999999999995 57899999984
No 137
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=66.63 E-value=1.7e+02 Score=30.62 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHH-h
Q 043953 115 TVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISL-T 193 (868)
Q Consensus 115 ~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~l-s 193 (868)
.++++.+ +|-.-.-|..-+=-+++.+||+|+......+.+..+.+..+.+++.+++... .+.....- |
T Consensus 61 ~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~---------~~~~Sl~PkS 129 (230)
T COG1346 61 GQWINFL--LGPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSP---------ELILSLLPKS 129 (230)
T ss_pred cHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHhcccc
Confidence 4555554 2333344555665678999999999998888888888888888888876542 22222222 4
Q ss_pred hccHHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHH
Q 043953 194 ITSFPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFLL 233 (868)
Q Consensus 194 ~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll 233 (868)
+|. |+...+-+++|-.+.=..-.++-.+++.-+++-.++
T Consensus 130 vTT-piAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~ll 168 (230)
T COG1346 130 VTT-PIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLL 168 (230)
T ss_pred ccc-HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 567777777776444333333334444444444333
No 138
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=65.92 E-value=1.7e+02 Score=30.44 Aligned_cols=108 Identities=18% Similarity=0.133 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhh
Q 043953 339 NIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKG 418 (868)
Q Consensus 339 ~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG 418 (868)
-+..-+.+-+-.+..|+|= +...+.. +|..++..++...+.-++.+++.++++|.+..- ...+.+|.
T Consensus 50 ~l~~lLgPatVALAvPLY~-------~~~~l~~--~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~----~~Sl~pkS 116 (215)
T PF04172_consen 50 ILSFLLGPATVALAVPLYR-------QRRLLKK--NWIPILVGVLVGSLVSIFSAVLLARLLGLSPEI----ILSLAPKS 116 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHHHHH
Confidence 3334444444455555541 2333443 466666666777777888888889999986632 34457899
Q ss_pred hHHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHH
Q 043953 419 VMALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFL 459 (868)
Q Consensus 419 ~v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~ 459 (868)
...-+...+..+.|-...-.-..++++-++-..+.++++++
T Consensus 117 VTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~ 157 (215)
T PF04172_consen 117 VTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKL 157 (215)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhH
Confidence 88777777777777665544444445555544444455555
No 139
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=65.50 E-value=15 Score=39.34 Aligned_cols=110 Identities=8% Similarity=0.022 Sum_probs=60.7
Q ss_pred eccCcchHHHHHHHHHhhcCCC-eEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHHHhhcCC
Q 043953 669 FIGGPDDREALFYAWRMAGKPG-VNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEFRFKTMY 747 (868)
Q Consensus 669 f~GG~ddreAL~~A~rma~~~~-v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~ 747 (868)
+.=.|.|+-|++.|.|+.++.+ .++|++.+=+++ . + +++.+++-.. .+
T Consensus 32 ~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~-a-----------------------~-----~~~~lr~aLA--mG 80 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKA-L-----------------------T-----NAKGRKDVLS--RG 80 (256)
T ss_pred cccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcc-h-----------------------h-----hHHHHHHHHH--cC
Confidence 3336899999999999998754 899999984322 0 0 1223333222 22
Q ss_pred CCceEEEE-e--ecCChHHHHHHHHhh--cCCccEEEEccCCCC-CCcc-ccCCCCCCCCCccccchhh
Q 043953 748 DSSITYND-K--MVSNVEELVESITTM--YGEYELYIIGRGDNV-KSPL-TMGLSGWVDNPELGPVGET 809 (868)
Q Consensus 748 ~~~v~y~e-~--~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~-~s~~-~~gl~~w~e~~eLG~igd~ 809 (868)
.++....+ . .-.|...|..+|.+. ..+|||++-|+..-. .+-+ -..+.+|-..|-+..+-++
T Consensus 81 aD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 81 PDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred CCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 23322221 1 112444555444433 235999999998632 2212 1223455566666666554
No 140
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=64.61 E-value=24 Score=34.73 Aligned_cols=27 Identities=37% Similarity=0.259 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHhhcCCCeEEEEEEee
Q 043953 673 PDDREALFYAWRMAGKPGVNLTVVRYV 699 (868)
Q Consensus 673 ~ddreAL~~A~rma~~~~v~ltvl~~~ 699 (868)
+.|+|+|+.|+++++..+.+++++-+=
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 889999999999999989999988763
No 141
>COG2985 Predicted permease [General function prediction only]
Probab=63.66 E-value=28 Score=40.11 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=69.6
Q ss_pred CCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHH---HHhhhhhH
Q 043953 73 QPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSA---VKRMEKKS 149 (868)
Q Consensus 73 ~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~---l~~~~k~~ 149 (868)
+-..-|.+++|++||- +|.+.+ +. +..| ......+.++|+++||--+|++---+. +-..+-..
T Consensus 395 LG~aGGpLivaLiLG~--ig~iGp--------l~-w~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ 460 (544)
T COG2985 395 LGNAGGPLIVALILGF--IGAIGP--------LT-WFMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQI 460 (544)
T ss_pred ecccccHHHHHHHHHH--hcccCc--------eE-EEcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhh
Confidence 3344567888998884 555544 21 2223 467888999999998877777654332 23444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHH-HHHhhccHHHHHHH
Q 043953 150 LSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWA-ISLTITSFPDLARI 203 (868)
Q Consensus 150 ~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~i 203 (868)
...+.+-.++|.+.+++++.++.+. ......| ++-+.|++|.+.-.
T Consensus 461 ig~g~lit~vp~i~~~llg~~v~km--------n~~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 461 IGYGALVTLVPVIIVFLLGRYVLKM--------NWLLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc--------cHHHHhhHHhcCCCChHHHHHH
Confidence 6666666777888888888776554 2344444 44588998865543
No 142
>COG0679 Predicted permeases [General function prediction only]
Probab=63.34 E-value=2.4e+02 Score=31.10 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=84.1
Q ss_pred chhhhHHHHHHHhhcCC--CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 043953 317 GMHSMAGGFIFGLIIPN--GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTV 394 (868)
Q Consensus 317 g~~~~lGafvaGl~l~~--~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~ 394 (868)
=.+|.+=|+++|+++.. -+....+.+-++.+ .+...|+=++..|+.++....... ....+......-.+..++..+
T Consensus 166 ~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~~-~~~~~~~~~~~kll~~Pl~~~ 243 (311)
T COG0679 166 LTNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKGS-KPPIILIALSLKLLLAPLVAL 243 (311)
T ss_pred HhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhccc-cchhHHHHHHHHHHHHHHHHH
Confidence 34677777778877774 23344566666666 788999999999999998544432 333333444445777888888
Q ss_pred HHHHHhCCChHHHHHHHHH--HhhhhhHHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHh
Q 043953 395 LVALCYGMPVRDGVALGGL--MNTKGVMALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLA 460 (868)
Q Consensus 395 l~~~~~~~~~~e~~~lg~~--m~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l 460 (868)
+.++.++++.-+.. ...+ ..|-+....+++.. .+ .+++..+..+....+.+.++-|...+.
T Consensus 244 ~~~~~~~l~~~~~~-v~vl~~a~P~A~~~~v~a~~---~~-~~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 244 LVAKLLGLSGLALQ-VLVLLSAMPTAVNAYVLARQ---YG-GDPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHHHcCCChHHHH-HHHHHhhCcHHhHHHHHHHH---hC-CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999998776652 2222 25556555555443 33 333444444444444466666655443
No 143
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=62.32 E-value=27 Score=34.43 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=54.7
Q ss_pred hHHHHHHHhhcCC-C---chhhHHHHHHHHHHHHhHHHHHHHHhhcccccccc---cchhhHHHHHHHHHHHHHHHHHHH
Q 043953 321 MAGGFIFGLIIPN-G---ELAINIMERTEEFISGVWLPSFIVVSGLRTNFLEL---FSKTKLFYLLLTTIVATSAKILST 393 (868)
Q Consensus 321 ~lGafvaGl~l~~-~---~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l---~~~~~~~~~~~ii~~~~~~K~l~~ 393 (868)
.-|++++|+++.+ . |..-.+-.....+..++-+-+|...+|++.=...+ .....+....+..++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 4577788887776 3 33334444455666888999999999999764333 332112233333444444456666
Q ss_pred HHHHHHhCCChHHHHHHHHH
Q 043953 394 VLVALCYGMPVRDGVALGGL 413 (868)
Q Consensus 394 ~l~~~~~~~~~~e~~~lg~~ 413 (868)
++..+++|+++.. ..|..
T Consensus 104 ~~~~~~~~~~~~~--~~G~~ 121 (154)
T TIGR01625 104 VALIKLLRINYAL--TAGML 121 (154)
T ss_pred HHHHHHhCCCHHH--HHHHH
Confidence 6667788998754 44443
No 144
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=62.05 E-value=4.1 Score=43.33 Aligned_cols=110 Identities=25% Similarity=0.331 Sum_probs=67.1
Q ss_pred HHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhh
Q 043953 348 ISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNE 427 (868)
Q Consensus 348 ~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~ 427 (868)
.++++=++.|.-+|..+|+..+...+ . .+++-..+-++ +..+++.+...|+..+|+..+|.+=+.-|-.++.+.+.
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanP--k-tllLGaAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~ 157 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANP--K-TLLLGAAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNK 157 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCc--H-HHHhhhHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEeccc
Confidence 46778888899999999998776532 1 11111222222 23455667778999999999998766666655544432
Q ss_pred ccccccCchHHHHHH-----HHHHHHHHHhHHHHHHHhhhHhhHhh
Q 043953 428 GRSLKAIDNILMAAM-----VFMLLLMTGLVGPIFFLANKKAKRTR 468 (868)
Q Consensus 428 ~~~~~ii~~~~~~~l-----v~~~lv~t~i~~plv~~l~~~~~~~~ 468 (868)
+.++....+ -.|+++ -++-||+.+.+-.+++|..
T Consensus 158 ------LAP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ERkI 196 (375)
T COG1883 158 ------LAPELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEERKI 196 (375)
T ss_pred ------cCHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHHHh
Confidence 223322222 223444 5677888888776665543
No 145
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=61.28 E-value=44 Score=33.39 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.9
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeee
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVY 700 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~ 700 (868)
+|++.+.||.|+--++.++.+...+.+.+++++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5889999999999999999998876567888888853
No 146
>COG2035 Predicted membrane protein [Function unknown]
Probab=60.91 E-value=2.4e+02 Score=30.39 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhC
Q 043953 45 RAVPLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIG 87 (868)
Q Consensus 45 ~~l~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLG 87 (868)
+=.|+..--..-++.++++..++.+. .|.++-...+|+++|
T Consensus 57 fLi~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~ 97 (276)
T COG2035 57 FLIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILG 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHH
Confidence 34456666666677788888888877 677777778899988
No 147
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=59.94 E-value=2.3e+02 Score=29.80 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhh
Q 043953 340 IMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGV 419 (868)
Q Consensus 340 l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~ 419 (868)
+..-+++-+-.+..|+| -+...+.. +|..+++.++++.+.-+.+.++.++++|.+.. .. ..+.+|..
T Consensus 61 l~~lLgPAtVALAvPLY-------~~~~~lk~--~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~--~Sl~pkSv 127 (226)
T TIGR00659 61 INDLLGPAVVALAIPLY-------KQLPQIKK--YWKEIILNVAVGSVIAIISGTLLALLLGLGPE--II--ASLLPKSV 127 (226)
T ss_pred HHHhhHHHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHhhhHHh
Confidence 33444555555666654 23334443 45555556666667777888888999998742 23 35689998
Q ss_pred HHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHh
Q 043953 420 MALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLA 460 (868)
Q Consensus 420 v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l 460 (868)
..-+...+..+.|-..+-.-..++++-++-..+.+++++++
T Consensus 128 TtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 128 TTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88777777777776655444445555555444445555554
No 148
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=58.44 E-value=2.5e+02 Score=29.68 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHH-Hh
Q 043953 115 TVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAIS-LT 193 (868)
Q Consensus 115 ~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~-ls 193 (868)
.+++..+ +|-.-.-|..-+=-+.+.+||+++....--+.+.++.++.+..++.+++... .+..+.+ -|
T Consensus 64 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~---------~~~~Sl~pKS 132 (232)
T PRK04288 64 GDIISFF--LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN---------AVMASMLPQA 132 (232)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH---------HHHHHHhhHh
Confidence 3444444 2333333444555678899999999888888888888888888888776532 2233322 24
Q ss_pred hccHHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHH
Q 043953 194 ITSFPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFL 232 (868)
Q Consensus 194 ~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~l 232 (868)
+|. |+...+-++.|-.+ .++....+++-+++.++
T Consensus 133 VTt-PIAm~is~~iGG~p----sLtA~~ViitGi~Gai~ 166 (232)
T PRK04288 133 ATT-AIALPVSAGIGGIK----EITSFAVIFNAVIIYAL 166 (232)
T ss_pred hhH-HHHHHHHHHhCCcH----HHHHHHHHHHHHHHHHH
Confidence 443 66777766666533 33333444444444433
No 149
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=58.08 E-value=1.2e+02 Score=33.87 Aligned_cols=89 Identities=17% Similarity=0.057 Sum_probs=55.7
Q ss_pred CCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhc-cChHHHHhhh-hhH
Q 043953 72 HQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLE-MDVSAVKRME-KKS 149 (868)
Q Consensus 72 ~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle-~d~~~l~~~~-k~~ 149 (868)
++|..+..++.|+++-- +|.+++. +.+. ...+-+++..--...+|+-.|+. +|++++.+.. .+.
T Consensus 203 ~Ih~~v~mII~~vi~k~--~gllp~~-------i~~~-----a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 203 GIPAYAFMILIAAALKA--FGLVPKE-------IEEG-----AKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred cCCHHHHHHHHHHHHHH--hCCCCHH-------HHHH-----HHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 68999999999999874 5666551 2111 11222233333344455557886 8999998887 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 043953 150 LSIAFAGIVIPFCIGAALHFVPIHE 174 (868)
Q Consensus 150 ~~ia~~~~llp~~~g~~~~~~l~~~ 174 (868)
+.+.+.+++--.+.+++++.+++.+
T Consensus 269 vviiv~~Vlg~ii~s~lvGKllG~Y 293 (347)
T TIGR00783 269 VVICLSVVVAMILGGAFLGKLMGMY 293 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 5555555555566666777777655
No 150
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=57.65 E-value=81 Score=31.34 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=31.4
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCC--CeEEEEEEeee
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKP--GVNLTVVRYVY 700 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~--~v~ltvl~~~~ 700 (868)
||++.+.||.|+--++.++.+..++. +.+++.+++..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999999999999999887654 77888888864
No 151
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=56.79 E-value=12 Score=32.32 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.6
Q ss_pred EEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEe
Q 043953 665 LCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRY 698 (868)
Q Consensus 665 I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~ 698 (868)
|++++.||+|+..++.+|.+.+ ..+.+++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 44567777777
No 152
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=56.65 E-value=1e+02 Score=37.07 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=49.4
Q ss_pred HHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCChHHHHHHHHHHhhhhh
Q 043953 349 SGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALC---------YGMPVRDGVALGGLMNTKGV 419 (868)
Q Consensus 349 ~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~---------~~~~~~e~~~lg~~m~~rG~ 419 (868)
..+++|....-.|..++...+.. ++..++.+.+.+++.-.+.+....++ .++++.+++.+|.++++-.-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 56788888889999999988876 34444444444444433333333221 25699999999999998887
Q ss_pred HHHH
Q 043953 420 MALI 423 (868)
Q Consensus 420 v~li 423 (868)
++..
T Consensus 147 VAVl 150 (559)
T TIGR00840 147 VAVL 150 (559)
T ss_pred HHHH
Confidence 7665
No 153
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=53.86 E-value=86 Score=34.64 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=29.0
Q ss_pred HHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHhhhcc
Q 043953 126 LTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFC---IGAALHFVPIHEG 175 (868)
Q Consensus 126 l~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~---~g~~~~~~l~~~~ 175 (868)
+.+||...|++-- ++++..+|..+.+...+++.|.+ +|..++++++.+.
T Consensus 213 L~lFLLeMGl~A~-~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~ 264 (327)
T PF05982_consen 213 LCLFLLEMGLVAA-RRLRDLRKVGWFLIAFGILMPLINALIGIGLGWLLGLSP 264 (327)
T ss_pred HHHHHHHhhHHHH-HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4567777777652 44555555555566666667754 5555666665443
No 154
>COG0679 Predicted permeases [General function prediction only]
Probab=53.13 E-value=2.6e+02 Score=30.80 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=63.3
Q ss_pred hhHHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 320 SMAGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVAL 398 (868)
Q Consensus 320 ~~lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~ 398 (868)
+++.-...|..+.+ .....+-.+-+..++..+.+|..+...=.+.+.+.. . .+.......+..++.=+...++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-A--DLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-h--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777766 666667777888999999999987777777776554 1 3444555555555556666666667
Q ss_pred HhCCChHHHHH--HHHHHhhhhhHHH
Q 043953 399 CYGMPVRDGVA--LGGLMNTKGVMAL 422 (868)
Q Consensus 399 ~~~~~~~e~~~--lg~~m~~rG~v~l 422 (868)
..+.+.+++.. .+...+.-|-+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~ 113 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGL 113 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhH
Confidence 77777776532 3333344444443
No 155
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=52.78 E-value=4.2e+02 Score=30.67 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHH
Q 043953 197 FPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFL 232 (868)
Q Consensus 197 ~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~l 232 (868)
+|++..+.+.+|+-+.+.--.+.+++.+.|..+.++
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 577888888888855544567889999999988865
No 156
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=52.69 E-value=1.5e+02 Score=33.37 Aligned_cols=86 Identities=16% Similarity=0.057 Sum_probs=53.0
Q ss_pred hhhHHHHHHHhhcCC-Cchh-----hHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 043953 319 HSMAGGFIFGLIIPN-GELA-----INIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILS 392 (868)
Q Consensus 319 ~~~lGafvaGl~l~~-~~~~-----~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~ 392 (868)
++.+=+.++|+++.- ++.. ..+.+-++.+ .....|+-.+.+|..+..........+......++..++.-++.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 444445555555554 2222 4555556665 78889999999999887543332213333444566777777777
Q ss_pred HHHHHHHhCCChH
Q 043953 393 TVLVALCYGMPVR 405 (868)
Q Consensus 393 ~~l~~~~~~~~~~ 405 (868)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7777778786554
No 157
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=52.39 E-value=1.7e+02 Score=36.61 Aligned_cols=87 Identities=13% Similarity=0.065 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHH--HH
Q 043953 123 SLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFP--DL 200 (868)
Q Consensus 123 ~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~--vv 200 (868)
++-+-++....|++.|+..+.+ +.............-++.+...+.+..-. +..++.+|.+++.=..- ++
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p-------~~~~l~l~~lm~~kgl~el~~ 384 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLP-------LRDSLALGLLMSTKGLVELIV 384 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHHHHHhhhHHHHHH
Confidence 4445556678899999999988 33333333333334455555555533322 36788888888765542 23
Q ss_pred HHHHHhcCcccChhHHH
Q 043953 201 ARILSDVKLLHTDIGKT 217 (868)
Q Consensus 201 ~~iL~el~ll~s~~g~l 217 (868)
...-.|.|..+.+.-.+
T Consensus 385 ~~~~~~~~~~~~~~f~~ 401 (769)
T KOG1650|consen 385 LNTGLDRKILSDEGFTV 401 (769)
T ss_pred HHHHhhcCCcccchHHH
Confidence 33445666666654433
No 158
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=51.86 E-value=60 Score=35.73 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=31.9
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeec
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYN 701 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~ 701 (868)
..++++.|.||+|+--.|.+|.+.-...+..+.++++.+.
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG 66 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTG 66 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCC
Confidence 3489999999999999999998876544566788877543
No 159
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=50.81 E-value=37 Score=37.37 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=32.0
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCe-EEEEEEee
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGV-NLTVVRYV 699 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v-~ltvl~~~ 699 (868)
.-+|||-|.||+|+-.-|.++.+.++..+- .+.|+++-
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 459999999999999999999999866554 78888874
No 160
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=49.67 E-value=4.3e+02 Score=29.82 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccch
Q 043953 299 ISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSK 372 (868)
Q Consensus 299 ~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~ 372 (868)
+.+-+....+++++. =.-.+++|.+.+|-.+.+... +++.+..+.-...+..-+.=..+|...+-..+.+.
T Consensus 233 ilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsGv-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~ 303 (399)
T TIGR03136 233 FVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQI-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDP 303 (399)
T ss_pred hHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 444444444444431 234688999999999998444 66666555444444444455678888877666554
No 161
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=49.64 E-value=1.7e+02 Score=32.35 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=50.8
Q ss_pred hHHHHHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 321 MAGGFIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKT-KLFYLLLTTIVATSAKILSTVLVAL 398 (868)
Q Consensus 321 ~lGafvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~-~~~~~~~ii~~~~~~K~l~~~l~~~ 398 (868)
++.+.++|...|. +..+..+. .|.. ......+.|...|++++..++...- .|...+......++.=.+..+...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888 44333332 1222 3344677778899999988776532 4555555555555555555555555
Q ss_pred HhCCChHHHHHHHHH
Q 043953 399 CYGMPVRDGVALGGL 413 (868)
Q Consensus 399 ~~~~~~~e~~~lg~~ 413 (868)
..+-...+.+..|+.
T Consensus 84 l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 84 LFPAFLPPELALGLL 98 (313)
T ss_pred HhhccCCHHHHHHHH
Confidence 543212233455544
No 162
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=49.06 E-value=2.6e+02 Score=27.14 Aligned_cols=104 Identities=9% Similarity=0.047 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCch---HHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHH
Q 043953 48 PLLATELGFAIVAIRLFIILLKPLHQPRF---IPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSL 124 (868)
Q Consensus 48 ~~lll~i~lil~~~~l~~~l~~rl~~P~i---v~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~l 124 (868)
..++.|+++++.+..+...+.+-+++|-+ +|.++.=++| .++....+ ..+ ...--.+.++
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L---~~~~vk~~-------~v~-------~~a~~LL~~m 69 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLL---CTKVVKLE-------QVE-------SLGTALTNNI 69 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcCHH-------HHH-------HHHHHHHHHH
Confidence 45788999999998888888888876643 3333221111 12333320 000 1111223444
Q ss_pred HHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043953 125 GLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALH 168 (868)
Q Consensus 125 gl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~ 168 (868)
++.|+=-.+|+=..++.++.++-+.+..-+.+.++.++....+.
T Consensus 70 ~LfFVPagVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~ 113 (141)
T PRK04125 70 GFLFVPSGISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFS 113 (141)
T ss_pred HHHHhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445777777778888877776666666666655444443
No 163
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=48.93 E-value=1e+02 Score=35.83 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=32.7
Q ss_pred cceEEEeeccCcchHHHHHHHHHhh-cCCCeEEEEEEeee
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMA-GKPGVNLTVVRYVY 700 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma-~~~~v~ltvl~~~~ 700 (868)
..+|++.+.||+|+--.|.+..++. ..++.+++++|+..
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnh 54 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHH 54 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeC
Confidence 4589999999999988888887776 45688999999964
No 164
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=48.41 E-value=2e+02 Score=28.82 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=51.2
Q ss_pred chhhhHHHHHHHhhcCC-Cch-hhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchh--hHHHHHHHHHHHHHHHHHH
Q 043953 317 GMHSMAGGFIFGLIIPN-GEL-AINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKT--KLFYLLLTTIVATSAKILS 392 (868)
Q Consensus 317 g~~~~lGafvaGl~l~~-~~~-~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~--~~~~~~~ii~~~~~~K~l~ 392 (868)
.+...-|+++.|+++.+ .+. ...+......+..++.+-+|...+|++.-...+.... .+... ++.++.++.-.+.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~-~~~~~i~~~~~~~ 100 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLL-LLGVIITLVPLLI 100 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHH
Confidence 33444577777777766 211 1113444555668888999999999997643332211 33333 3333444445555
Q ss_pred HHHHHH-HhCCChHH
Q 043953 393 TVLVAL-CYGMPVRD 406 (868)
Q Consensus 393 ~~l~~~-~~~~~~~e 406 (868)
++..++ ++|+++-.
T Consensus 101 ~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 101 ALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHcCCCHHH
Confidence 566666 88988654
No 165
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=47.49 E-value=2.6e+02 Score=31.83 Aligned_cols=97 Identities=19% Similarity=0.289 Sum_probs=56.6
Q ss_pred HHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHHHH-HHh--hhhh
Q 043953 344 TEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMP-VRDGVALGG-LMN--TKGV 419 (868)
Q Consensus 344 l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~-~~e~~~lg~-~m~--~rG~ 419 (868)
+.+.++..++|+-....=++.|++.+... . .-.+...+.+.++-++++.++.+.++.. -.|.+.+.- +.+ .-|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~-g-~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRL-G-GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHh-h-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 34445677777777777788999888764 3 2345555566677777777777766643 234443332 222 2455
Q ss_pred HHHHHHhhccccccCchHHHHHHHHH
Q 043953 420 MALIVLNEGRSLKAIDNILMAAMVFM 445 (868)
Q Consensus 420 v~lil~~~~~~~~ii~~~~~~~lv~~ 445 (868)
+.++....+++ .+++.++..+.+
T Consensus 130 ~N~~Av~~al~---~~~~~~~a~~aa 152 (378)
T PF05684_consen 130 VNFVAVAEALG---VSDSLFAAALAA 152 (378)
T ss_pred hHHHHHHHHHC---CCHHHHHHHHHH
Confidence 66655544443 346666665443
No 166
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=47.12 E-value=2.9e+02 Score=31.05 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHhchh--hhHH-HHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchh-
Q 043953 298 HISVILLGVVVCGFIADGCGMH--SMAG-GFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKT- 373 (868)
Q Consensus 298 ~~~~il~~~~~~~~lae~~g~~--~~lG-afvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~- 373 (868)
+....+.+.+..+++.+..|+. -++| ..++|++..-....-.+-..+... -.-+-=..+|.++..+.+....
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P~~l~~~----~q~ilG~~ig~~~t~s~l~~l~~ 85 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLPRGLFKA----GQVILGIMIGASLTPSVLDTLKS 85 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCChHHHHH----HHHHHHHHHhhhcCHHHHHHHHH
Confidence 4455556666777888877763 4567 555555544311111111222222 1222334577777776665433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHh
Q 043953 374 KLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLN 426 (868)
Q Consensus 374 ~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~ 426 (868)
.|...+++.++.+..-++..|+..++.+.|..+++ |...|-|.-++....
T Consensus 86 ~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~iA 135 (352)
T COG3180 86 NWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSIA 135 (352)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHHH
Confidence 57777788888888888888888888877665543 344666666655443
No 167
>TIGR00930 2a30 K-Cl cotransporter.
Probab=45.66 E-value=7.9e+02 Score=31.76 Aligned_cols=128 Identities=8% Similarity=0.097 Sum_probs=74.7
Q ss_pred CCeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHH
Q 043953 483 ELRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFR 562 (868)
Q Consensus 483 elriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 562 (868)
.-++|+.+.+|+.-+.+++++..+.+.+ .+ ..+.|+++-+.+... .+ .++..+..+
T Consensus 575 rPqiLvl~~~p~~~~~Ll~f~~~l~~~~--gl-~i~~~v~~~~~~~~~----~~-----------------~~~~~~~~~ 630 (953)
T TIGR00930 575 RPQCLVLTGPPVCRPALLDFASQFTKGK--GL-MICGSVIQGPRLECV----KE-----------------AQAAEAKIQ 630 (953)
T ss_pred CCeEEEEeCCCcCcHHHHHHHHHhccCC--cE-EEEEEEecCchhhhH----HH-----------------HHHHHHHHH
Confidence 3579999999999999999999999433 23 456688764322110 00 011112222
Q ss_pred HHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhc-----CccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcce
Q 043953 563 HYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDK-----VVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSI 637 (868)
Q Consensus 563 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~-----~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsV 637 (868)
.+-+. .+ ++.|..+.--.++.+.+.++.+.- +++.++|||...|+.+... . -..|-.+.+.. -++-..|
T Consensus 631 ~~~~~-~~--~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~-~-~~~y~~~i~~a-~~~~~~v 704 (953)
T TIGR00930 631 TWLEK-NK--VKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR-A-WETYIGIIHDA-FDAHLAV 704 (953)
T ss_pred HHHHH-hC--CCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch-h-HHHHHHHHHHH-HHcCCcE
Confidence 22222 12 333443333469999999999875 5999999999988754321 1 12233333333 2445566
Q ss_pred EEE
Q 043953 638 GIL 640 (868)
Q Consensus 638 gIl 640 (868)
.|+
T Consensus 705 ~i~ 707 (953)
T TIGR00930 705 VVV 707 (953)
T ss_pred EEE
Confidence 555
No 168
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=45.19 E-value=77 Score=34.07 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=63.9
Q ss_pred CcchHHHHHHHHHhhc-CCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHHHhhcCCCCc
Q 043953 672 GPDDREALFYAWRMAG-KPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEFRFKTMYDSS 750 (868)
Q Consensus 672 G~ddreAL~~A~rma~-~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~ 750 (868)
-+.|+-|++.|.|+.+ ..+.++|++.+=++. .++.+.+-. .++-++
T Consensus 36 n~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~-------------------------------a~~~lr~aL--AmGaDr 82 (260)
T COG2086 36 NPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ-------------------------------AEEALREAL--AMGADR 82 (260)
T ss_pred ChhhHHHHHHHHHhhccCCCceEEEEEecchh-------------------------------hHHHHHHHH--hcCCCe
Confidence 5889999999999999 699999999983322 111222211 123333
Q ss_pred eEEEE---eecCChHHHHHHHHhh--cCCccEEEEccCCCCC-Cccc-cCCCCCCCCCccccchhhhc
Q 043953 751 ITYND---KMVSNVEELVESITTM--YGEYELYIIGRGDNVK-SPLT-MGLSGWVDNPELGPVGETLV 811 (868)
Q Consensus 751 v~y~e---~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~-s~~~-~gl~~w~e~~eLG~igd~la 811 (868)
..-.+ ---.|+..+..+|.+. ..++||++.|+..... +-++ ..+.+|-..|..+.+-+.-.
T Consensus 83 aili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~ 150 (260)
T COG2086 83 AILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEI 150 (260)
T ss_pred EEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEE
Confidence 32222 1123455566666654 3458999999986432 2222 34446666677777666553
No 169
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=45.03 E-value=77 Score=34.74 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=31.3
Q ss_pred ceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeec
Q 043953 663 LKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYN 701 (868)
Q Consensus 663 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~ 701 (868)
.+.++.|.||+|+--.|.+|.+.-...+..+.++++-+.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG 58 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTG 58 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecC
Confidence 356788999999999999999886544567888888543
No 170
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=44.40 E-value=1.3e+02 Score=32.81 Aligned_cols=74 Identities=9% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHH
Q 043953 78 PELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGI 157 (868)
Q Consensus 78 ~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~ 157 (868)
--++.|+++|. .++ |+.+++-|. ..+-..|+-|..|-.+|++.+.+.+-.-+.+++..+
T Consensus 176 lPlliG~ilGN-----LD~-------~~r~fl~~~---------~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~ 234 (314)
T TIGR00793 176 LPFLVGFALGN-----LDP-------ELRDFFSKA---------VQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVI 234 (314)
T ss_pred HHHHHHHHHhc-----CCH-------HHHHHhccC---------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHH
Confidence 35678899886 333 244444332 223355788999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHhh
Q 043953 158 VIPFCIGAALHFVPI 172 (868)
Q Consensus 158 llp~~~g~~~~~~l~ 172 (868)
+++....++...++.
T Consensus 235 ~vtG~~~~~~dr~~~ 249 (314)
T TIGR00793 235 ILTGIPLILADKFIG 249 (314)
T ss_pred HHHhHHHHHHHHHhc
Confidence 777777777666664
No 171
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=42.24 E-value=3.8e+02 Score=27.14 Aligned_cols=127 Identities=13% Similarity=0.161 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHH--HhchhhhHHHHHHHhhcCCCchhhHHHHHHHHH
Q 043953 270 LIFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIAD--GCGMHSMAGGFIFGLIIPNGELAINIMERTEEF 347 (868)
Q Consensus 270 ~~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae--~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~ 347 (868)
.+...+.+++.-.+..|. |+. -......++..+......+ ..-...+++++++=++.....+++.....+...
T Consensus 38 ~i~ali~g~vyml~~~KV-~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~ 112 (186)
T PF09605_consen 38 AIAALICGIVYMLMVAKV-PKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYA 112 (186)
T ss_pred HHHHHHHHHHHHHHHHHc-Cch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 334445566666777777 432 1222222222222112221 233455566777777775555444333332211
Q ss_pred -----HHHhHHHHHHHHhhcc---------cc-cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043953 348 -----ISGVWLPSFIVVSGLR---------TN-FLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYG 401 (868)
Q Consensus 348 -----~~~l~~plfFv~~Gl~---------~d-l~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~ 401 (868)
..+-..|++|..-... -+ ...+.+..+.+..++.++..+++=++|+++..+.++
T Consensus 113 vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 113 VFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1266777776544333 11 111111112344556666777788888888877654
No 172
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=41.00 E-value=88 Score=32.81 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=50.7
Q ss_pred eEEEEEEEecCC-CchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecC
Q 043953 572 TVQPLTAVSSFT-SIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDR 643 (868)
Q Consensus 572 ~v~~~t~vs~~~-~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 643 (868)
...++|-+.|.+ ...++|.+.+.+-++|.|++| |+..-+....+.+.+++-++..-||-++...
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIG--------GS~gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIG--------GSDGVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEEC--------CcccccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 356888999999 999999999999999999999 3332233457778888888999998777433
No 173
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=40.88 E-value=1.2e+02 Score=33.39 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHH
Q 043953 78 PELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGI 157 (868)
Q Consensus 78 ~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~ 157 (868)
--++.|+++|. .++ |+.+++-|. ..+-+-|+-|..|-.+|+..+.+.+-.-+.+++..+
T Consensus 176 lP~iiG~iLGN-----LD~-------~~r~fl~~~---------~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~ 234 (314)
T PF03812_consen 176 LPIIIGMILGN-----LDP-------DFRKFLAPG---------VPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVV 234 (314)
T ss_pred HHHHHHHHHhc-----CCH-------HHHHHHhcC---------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHH
Confidence 35678999886 333 244444332 223355788999999999999999998888888877
Q ss_pred HHHHHHHHHHHHHhh
Q 043953 158 VIPFCIGAALHFVPI 172 (868)
Q Consensus 158 llp~~~g~~~~~~l~ 172 (868)
+++....+.+..++.
T Consensus 235 ~vtg~~~~~~dr~i~ 249 (314)
T PF03812_consen 235 VVTGIPLYLADRLIL 249 (314)
T ss_pred HHHhHHHHHHHHHHc
Confidence 777666666666553
No 174
>COG3329 Predicted permease [General function prediction only]
Probab=40.80 E-value=5.3e+02 Score=28.35 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 043953 150 LSIAFAGIVIPFCIGAALHFVPIH 173 (868)
Q Consensus 150 ~~ia~~~~llp~~~g~~~~~~l~~ 173 (868)
+.-...++.+.+++++...+++.+
T Consensus 71 v~~~~~~~aL~~li~~ia~f~l~k 94 (372)
T COG3329 71 VLPVALGVALGFLIVFIAYFLLRK 94 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555444444433
No 175
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.19 E-value=5.3e+02 Score=28.13 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 043953 349 SGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAK 389 (868)
Q Consensus 349 ~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K 389 (868)
+-+-+|+.|..+.-+-.+..-.. .+|..+.++.+...+.|
T Consensus 229 ~ylTlPvLf~MiSnHyp~~y~~~-~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 229 NYLTLPVLFLMISNHYPMTYGHP-YNWLILALIMLAGALIR 268 (300)
T ss_pred ceeHHHHHHHHHhccCccccccc-hhHHHHHHHHHHHHHHH
Confidence 46678998888765555433222 27766666666555555
No 176
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=40.18 E-value=4.2e+02 Score=26.97 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043953 376 FYLLLTTIVATSAKILSTVLVALCYG 401 (868)
Q Consensus 376 ~~~~~ii~~~~~~K~l~~~l~~~~~~ 401 (868)
+...+.++...++-++|+++..+.++
T Consensus 159 ~~~~~~~~~t~v~~~iG~~iG~kllk 184 (189)
T TIGR02185 159 IWAVIMIVLTAVAGIAGVLIGKKLLK 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556667777888888877764
No 177
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=39.14 E-value=56 Score=36.10 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeec---CChHHHHHHHHhhcC-----CccEEEEccCCCC
Q 043953 734 DDEFINEFRFKTMYDSSITYNDKMV---SNVEELVESITTMYG-----EYELYIIGRGDNV 786 (868)
Q Consensus 734 d~~~~~~~~~~~~~~~~v~y~e~~v---~~~~e~~~~i~~~~~-----~~DL~iVGr~~~~ 786 (868)
-.+|++....++.. -++.+....| +...+++.+|+..+. +||++|++||+|.
T Consensus 28 ~~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 28 IQDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 45677777766543 3455555666 456788888887742 5999999999974
No 178
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=38.78 E-value=5.9e+02 Score=28.31 Aligned_cols=72 Identities=7% Similarity=0.138 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccch
Q 043953 299 ISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSK 372 (868)
Q Consensus 299 ~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~ 372 (868)
+.+-+....+++++. =.-.+++|.+.+|-.+.+...-+++.+..+.-...+..-+.=..+|...+-..+.+.
T Consensus 195 i~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrEsGv~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~ 266 (354)
T TIGR01109 195 ILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRESGVVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTP 266 (354)
T ss_pred hHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 444444444444431 234688999999999998554445554444433344444445677888876666553
No 179
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=38.77 E-value=2.5e+02 Score=32.44 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=62.1
Q ss_pred hhHHHHHHHhccCC--cceEEEecCCCCCccccccccccccCccceEEEeeccCcchHHHHHHHHHhh-cCCCeEEEEEE
Q 043953 621 QIREVNNNLLAKAP--CSIGILVDRGIGSAVITSAQSSLHGRQGLKLCMLFIGGPDDREALFYAWRMA-GKPGVNLTVVR 697 (868)
Q Consensus 621 ~~r~vn~~Vl~~Ap--CsVgIlvdrg~~~~~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~A~rma-~~~~v~ltvl~ 697 (868)
..-.+|++|+-.+| |.- |+-++- . ..+|||+|.||-|.---..++.+.. +|+.+.|-=+-
T Consensus 224 l~ds~k~rvl~i~~rl~~~-i~~~c~-----------~-----~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVa 286 (520)
T KOG0573|consen 224 LRDSLKDRVLVIPPRLCAN-ILLRCI-----------H-----ESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVA 286 (520)
T ss_pred HHHHHhhhhhccChhHhhh-cccccc-----------c-----cCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEee
Confidence 35567788877776 322 221111 1 3499999999999999999999988 66666555555
Q ss_pred eeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHHHhhcCCCCceEEEEe
Q 043953 698 YVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEFRFKTMYDSSITYNDK 756 (868)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~e~ 756 (868)
|-.+.... + ++-++++....-++|++..+.. ....+.|.
T Consensus 287 F~n~e~~~-----------~--------~~~PDRktgr~g~~eL~s~~P~-R~~nlV~v 325 (520)
T KOG0573|consen 287 FGNPEGSK-----------E--------QNVPDRKTGRRGLEELQSLYPK-RSWNLVEV 325 (520)
T ss_pred ccCCCccc-----------c--------cCCccHHHHHHHHHHHHHhCCc-ceEEEEec
Confidence 53221110 0 1246778888888999876543 34555543
No 180
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=37.61 E-value=1.3e+02 Score=28.93 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred CCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccC-CcceEEEecCCCC
Q 043953 583 TSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKA-PCSIGILVDRGIG 646 (868)
Q Consensus 583 ~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~A-pCsVgIlvdrg~~ 646 (868)
....+.+.+++++++++.||+|...+. ||.........+.+-+++-++- +++|- ++|-.+.
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV~-~~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPVI-LVDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEEE-EEECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcEE-EECCChh
Confidence 588999999999999999999987654 5554444556788888887776 89984 5665443
No 181
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=37.10 E-value=3.5e+02 Score=26.26 Aligned_cols=41 Identities=2% Similarity=-0.072 Sum_probs=18.3
Q ss_pred HHHHHHH--hhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 043953 353 LPSFIVV--SGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTV 394 (868)
Q Consensus 353 ~plfFv~--~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~ 394 (868)
+|+||+= +|.-..+..+.+. .|.+++++++..++.=.+..+
T Consensus 69 m~LfFVPagVGim~~~~ll~~~-~~~Il~~ivvSTllvl~vtg~ 111 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQY-PVQIIGVIIVATILLLACTGL 111 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5667754 4444445555543 343333333333333333333
No 182
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=36.74 E-value=5.1e+02 Score=27.02 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=52.8
Q ss_pred HHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhhccHHHHHHHHHhcCccc
Q 043953 132 LVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTITSFPDLARILSDVKLLH 211 (868)
Q Consensus 132 ~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~ 211 (868)
..-+-=+.+.+||+++....--+.+.++.++.+..++++++.. ..+..+.+-=...+|+...+-++++-..
T Consensus 63 AvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~---------~~~~~Sl~pkSVTtpiAi~is~~iGG~~ 133 (215)
T PF04172_consen 63 AVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLS---------PEIILSLAPKSVTTPIAIEISEQIGGIP 133 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC---------HHHHHHHHHHHhhHHHHHHHHHHhCChH
Confidence 3344456788999999988888888888888888877777643 2333333332333467777777766532
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q 043953 212 TDIGKTALSSAIVNDLSSWF 231 (868)
Q Consensus 212 s~~g~l~ls~a~v~D~~~~~ 231 (868)
.++....+++-+++.+
T Consensus 134 ----sLta~~VvitGi~Ga~ 149 (215)
T PF04172_consen 134 ----SLTAVFVVITGILGAV 149 (215)
T ss_pred ----HHHHHHHHHHhhHHHH
Confidence 3333344444444433
No 183
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=36.55 E-value=83 Score=34.75 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=32.0
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeec
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYN 701 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~ 701 (868)
..++++.|.||+|+--.|.+|.+.....+..+.++++-+.
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG 76 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT 76 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC
Confidence 3468899999999999999999987554556788888543
No 184
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.49 E-value=3.8e+02 Score=25.45 Aligned_cols=16 Identities=38% Similarity=0.820 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 043953 272 FWFVLRPCIAWMIKET 287 (868)
Q Consensus 272 ~~~v~r~~~~~l~~~~ 287 (868)
.+-+.+|++.|..|+-
T Consensus 35 fg~llGPlivW~~kK~ 50 (143)
T COG3296 35 FGSLLGPLIVWLLKKD 50 (143)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4556679999988883
No 185
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=34.49 E-value=7.4e+02 Score=28.21 Aligned_cols=24 Identities=17% Similarity=0.502 Sum_probs=16.0
Q ss_pred HHHHhhcccCCCchHHHHHHHHhh
Q 043953 63 LFIILLKPLHQPRFIPELLTSILI 86 (868)
Q Consensus 63 l~~~l~~rl~~P~iv~~IlaGilL 86 (868)
+..++.++.++|.-+.-+++.+++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 444666777788777777666554
No 186
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=33.58 E-value=8.1e+02 Score=28.39 Aligned_cols=37 Identities=24% Similarity=0.132 Sum_probs=26.1
Q ss_pred ChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043953 138 DVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHE 174 (868)
Q Consensus 138 d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~ 174 (868)
|.+++.|.+.+.+..-+....+..++|..++.++.+.
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~pg 102 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQPG 102 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6677777777776666666666777777777776654
No 187
>COG3371 Predicted membrane protein [Function unknown]
Probab=33.30 E-value=2.7e+02 Score=28.09 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=51.6
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHhhc-ccCCCchHHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHH
Q 043953 40 QNPMMRAVPLLATELGFAIVAIRLFIILLK-PLHQPRFIPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLL 118 (868)
Q Consensus 40 ~~pl~~~l~~lll~i~lil~~~~l~~~l~~-rl~~P~iv~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l 118 (868)
.+++-++..+++.-+..++... . +.| |.+-+.-.-++++|+.+.- .|..+. + ...
T Consensus 46 p~~~ifN~glIl~Gll~i~~s~-~---l~r~k~~~~g~~ll~is~lfLaL--VGVFpE----------------g--t~p 101 (181)
T COG3371 46 PYGWIFNTGLILLGLLVILFSI-L---LIRNKIENYGGALLIISGLFLAL--VGVFPE----------------G--TPP 101 (181)
T ss_pred CcceEEechHHHHHHHHHHHHH-H---HHHHHhhhcchHHHHHHHHHHHh--eeeCCC----------------C--CCc
Confidence 4445566555555444333222 2 222 5565666667788877662 333322 1 134
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHH
Q 043953 119 ETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSI 152 (868)
Q Consensus 119 ~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~i 152 (868)
..+..+...+++|.+.+-+..+..+++.+....+
T Consensus 102 H~~vs~~ffll~fi~~~i~si~~~~~~~~~~~~~ 135 (181)
T COG3371 102 HVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGLI 135 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 5667777888899998888888877755544433
No 188
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=33.01 E-value=7.3e+02 Score=27.70 Aligned_cols=72 Identities=8% Similarity=0.173 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccch
Q 043953 299 ISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSK 372 (868)
Q Consensus 299 ~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~ 372 (868)
+.+-++...+++++. =.-.+++|.+.+|-.+.+....+++.+..+.-...+..-+.=..+|...+-..+.+.
T Consensus 195 iiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rEsgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~ 266 (360)
T PF03977_consen 195 IIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRESGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNP 266 (360)
T ss_pred HHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCH
Confidence 444444444444431 234688999999999998544455554444333344444445677888776666553
No 189
>COG3748 Predicted membrane protein [Function unknown]
Probab=31.57 E-value=4e+02 Score=29.43 Aligned_cols=40 Identities=8% Similarity=-0.028 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 043953 349 SGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAK 389 (868)
Q Consensus 349 ~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K 389 (868)
+.+-+|+.|..+-=+..+..-.. .+|.++.++.++++..|
T Consensus 226 nylTLPVlF~MlSNHyp~~~gt~-fnWii~alv~l~gV~IR 265 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAFGTQ-FNWIIAALVFLMGVLIR 265 (407)
T ss_pred ceehHHHHHHHHhccCcccccCc-hhHHHHHHHHHHHHHHH
Confidence 57789999998777766544333 37887777766666655
No 190
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=31.34 E-value=69 Score=36.85 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeecC---ChHHHHHHHHhhc--CCccEEEEccCCCC
Q 043953 734 DDEFINEFRFKTMYDSSITYNDKMVS---NVEELVESITTMY--GEYELYIIGRGDNV 786 (868)
Q Consensus 734 d~~~~~~~~~~~~~~~~v~y~e~~v~---~~~e~~~~i~~~~--~~~DL~iVGr~~~~ 786 (868)
-.+.+.-.+.+...-+-+.| ...|. .+.|++++|+..+ +++|.+||||++|.
T Consensus 149 irDIl~~~~rR~P~~~viv~-pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 149 LRDILHTLSRRFPSVEVIVY-PTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHHHHhhCCCCeEEEE-eccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 44566667777654333444 33442 3688899999763 34999999999874
No 191
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=30.94 E-value=6.2e+02 Score=26.25 Aligned_cols=27 Identities=15% Similarity=0.034 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhchhhhH-HHHHHHhh
Q 043953 304 LGVVVCGFIADGCGMHSMA-GGFIFGLI 330 (868)
Q Consensus 304 ~~~~~~~~lae~~g~~~~l-GafvaGl~ 330 (868)
++.+...+..+++|-.++. .+++.|++
T Consensus 137 ~i~~~~~~~~~~~G~~Gl~~~a~isGl~ 164 (211)
T PF13194_consen 137 VILLLSRAAQRWFGDSGLYALAAISGLA 164 (211)
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHhh
Confidence 3445556677889888775 67788863
No 192
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=30.87 E-value=7.8e+02 Score=27.35 Aligned_cols=67 Identities=10% Similarity=-0.019 Sum_probs=38.2
Q ss_pred Hhhcccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHH---hhhhhHHHHHHhh
Q 043953 359 VSGLRTNFLELFSKT-KLFYLLLTTIVATSAKILSTVLVALCY-GMPVRDGVALGGLM---NTKGVMALIVLNE 427 (868)
Q Consensus 359 ~~Gl~~dl~~l~~~~-~~~~~~~ii~~~~~~K~l~~~l~~~~~-~~~~~e~~~lg~~m---~~rG~v~lil~~~ 427 (868)
..|+++++.++.+.. .+....+..+.-++...+.++..++.+ +.+.. +.+|+.+ +|-|..+.+...+
T Consensus 55 ~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~l 126 (328)
T TIGR00832 55 PPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQL 126 (328)
T ss_pred HhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHH
Confidence 334666655554321 455566666677777888888777754 66543 5556554 4445444444443
No 193
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=30.66 E-value=6e+02 Score=30.62 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHH
Q 043953 227 LSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFILIFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGV 306 (868)
Q Consensus 227 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~ 306 (868)
+.+=+++++...+... .......+...+..+....+|.+..-.+..++..-+..|- -++-.
T Consensus 242 v~gGil~ai~~~~g~~-----~~~~~~~~~~~~~~~gg~~~~~lmvpvla~yia~sia~rp--------------glapg 302 (563)
T PRK10712 242 VAGGLCIALSFAFGIE-----AFKEPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRP--------------GLTPG 302 (563)
T ss_pred HHhHHHHHHHHHhCcc-----ccCCccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCc--------------cchHH
Q ss_pred HHHHHHHHHhchhhhHHHHHHHhhcCC--CchhhH--HHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHH
Q 043953 307 VVCGFIADGCGMHSMAGGFIFGLIIPN--GELAIN--IMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTT 382 (868)
Q Consensus 307 ~~~~~lae~~g~~~~lGafvaGl~l~~--~~~~~~--l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii 382 (868)
|..++++...| ++++|+.++|++... .-+.+. +-+.++.+..-++.|++-++ ....+.+.
T Consensus 303 ~i~g~~a~~~~-~GFlG~Ilag~lagyv~~~l~K~~~lP~~l~~l~piliiPllt~l---------------i~~~l~~~ 366 (563)
T PRK10712 303 LIGGMLAVSTG-SGFIGGIIAGFLAGYVAKLISTKLKLPQSMEALKPILIIPLISSL---------------VVGLAMIY 366 (563)
T ss_pred HHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhccCcHHHHhcCceeehhHHHHH---------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHH----HhhccccccCchHHHHHHHHHHHHHHHhHHHHHH
Q 043953 383 IVATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIV----LNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFF 458 (868)
Q Consensus 383 ~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil----~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~ 458 (868)
++.-.+-++..++..++..+.-...+.+|.+++.--.+++-- +......+.+.+..|..+. .......++|+-.
T Consensus 367 viGpp~~~l~~~l~~~l~~l~~~~~~l~G~ilGam~~fdmggpvnkaa~~~~~~~la~~g~~p~~--a~~~a~~vpp~G~ 444 (563)
T PRK10712 367 LIGKPVAGILEGLTHWLQTMGTANAVLLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYAPMA--AIMAAGMVPPLAM 444 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHhcCchHHH--HHHHHHHhHHHHH
Q ss_pred HhhhHh-hHhhhhhhhhh
Q 043953 459 LANKKA-KRTRKYKQRTI 475 (868)
Q Consensus 459 ~l~~~~-~~~~~~~~r~i 475 (868)
.+---- |++...+.|+.
T Consensus 445 alA~~l~k~kf~k~er~~ 462 (563)
T PRK10712 445 GLATMVARRKFDKAQQEG 462 (563)
T ss_pred HHHHHHHHhcCCHHHHHH
No 194
>PRK01821 hypothetical protein; Provisional
Probab=30.45 E-value=5e+02 Score=24.95 Aligned_cols=104 Identities=9% Similarity=-0.030 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCch---HHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHH
Q 043953 48 PLLATELGFAIVAIRLFIILLKPLHQPRF---IPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSL 124 (868)
Q Consensus 48 ~~lll~i~lil~~~~l~~~l~~rl~~P~i---v~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~l 124 (868)
..++.|+++++.+..+...+.+-+++|-+ +|.++.=+.+ .++.+..+ +.+ ...--.++++
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L---~~~~vk~~-------~v~-------~~a~~LL~~m 71 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLL---ALQILPAK-------WVK-------PGCSLLIRYM 71 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcCHH-------HHH-------HHHHHHHHHH
Confidence 35677888888888888888887776533 3332211111 12333320 100 0111223444
Q ss_pred HHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043953 125 GLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALH 168 (868)
Q Consensus 125 gl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~ 168 (868)
++.|+=-.+|+=...+.++.++-+....-+.+.++.++....+.
T Consensus 72 ~LfFVPa~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~ 115 (133)
T PRK01821 72 ALLFVPIGVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSS 115 (133)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445677666777777777766666666666554444433
No 195
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=30.19 E-value=9.3e+02 Score=28.01 Aligned_cols=128 Identities=10% Similarity=0.075 Sum_probs=66.9
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHH----HhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 324 GFIFGLIIPNGELAINIMERTEEFIS----GVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALC 399 (868)
Q Consensus 324 afvaGl~l~~~~~~~~l~~~l~~~~~----~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~ 399 (868)
..+.|.++...|.-+++.+++..+.. .+.+-.+...++.-+ +|++ .+++.++++|-++- +.
T Consensus 64 ilvtG~~lA~sp~v~r~l~~la~~p~t~~~ai~~v~~vs~~~s~i---------nWG~--gLV~gallAre~Ar----~~ 128 (438)
T TIGR00366 64 ILVTGYALAYSPIVYKLLKTIASLPKTPKQAVALVTFIGSIACWI---------NWGF--GLVVGAIFAREVAR----RV 128 (438)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCCCCCCceeehHHHHHHHHHHH---------HHhH--HHHHHHHHHHHHHH----hc
Confidence 56788999997777777777776522 222222222222111 3432 34445566665432 11
Q ss_pred hCCChHHH---HH---HHHHHhhhhhHHHHHHhhccc----------ccc--CchHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043953 400 YGMPVRDG---VA---LGGLMNTKGVMALIVLNEGRS----------LKA--IDNILMAAMVFMLLLMTGLVGPIFFLAN 461 (868)
Q Consensus 400 ~~~~~~e~---~~---lg~~m~~rG~v~lil~~~~~~----------~~i--i~~~~~~~lv~~~lv~t~i~~plv~~l~ 461 (868)
-|++.|-. -+ +-|-++.-|.+.+..++-+.. .++ +++..|+-.-+.+++..+++.|++.++.
T Consensus 129 ~~vdY~lliAaaY~G~~~W~~GlS~S~pl~~at~g~~l~~~~~~~~~~~vIp~s~Tif~~~nl~~~~~~~v~~~l~~~~~ 208 (438)
T TIGR00366 129 KGSDYPLLIACAYIGFLTWHGGLSGSMPLLAATPNNPLKHIFVELFGRETIPLNETIFSGYNLIITAIIIVFLPFITYMM 208 (438)
T ss_pred cCCCHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCChhhhhhhccccCCeeCCchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 12333221 11 222234445555555554421 123 3566777666666666778889999888
Q ss_pred hHhhH
Q 043953 462 KKAKR 466 (868)
Q Consensus 462 ~~~~~ 466 (868)
.|+++
T Consensus 209 ~P~~~ 213 (438)
T TIGR00366 209 MPKRG 213 (438)
T ss_pred CCCCC
Confidence 77554
No 196
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.56 E-value=2.5e+02 Score=23.70 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043953 256 GAFLMAMLPIICFILIFWFVLRPCIAWMIKET 287 (868)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~ 287 (868)
...++..++.+++++.++|+.|+.+...++.+
T Consensus 5 lail~ivl~ll~G~~~G~fiark~~~k~lk~N 36 (71)
T COG3763 5 LAILLIVLALLAGLIGGFFIARKQMKKQLKDN 36 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33455556666667777888888887777766
No 197
>PRK01658 holin-like protein; Validated
Probab=29.43 E-value=4.9e+02 Score=24.56 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCch---HHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHH
Q 043953 48 PLLATELGFAIVAIRLFIILLKPLHQPRF---IPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSL 124 (868)
Q Consensus 48 ~~lll~i~lil~~~~l~~~l~~rl~~P~i---v~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~l 124 (868)
..++.|+++++.+..+...+.+-+++|-+ +|.++.=+.+ .++.+..+ +.+ ...--.++++
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L---~~~~ik~~-------~v~-------~~a~~Ll~~m 66 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLL---SFKILKLK-------WIE-------LGAETLLAEL 66 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---HhCCcCHH-------HHH-------HHHHHHHHHH
Confidence 35678888888888888888887776543 3333211111 12333320 100 1111223444
Q ss_pred HHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043953 125 GLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHF 169 (868)
Q Consensus 125 gl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~ 169 (868)
++.|.=-.+|+=...+.+++++-+....-+.+.++.++....+..
T Consensus 67 ~llFVPa~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~ 111 (122)
T PRK01658 67 PLFFIPSAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQ 111 (122)
T ss_pred HHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444457777777788888877776666666666555444433
No 198
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=29.34 E-value=7.6e+02 Score=26.77 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=18.7
Q ss_pred cCcccChhHHHHHHHHHHHHHHHHHHHH
Q 043953 207 VKLLHTDIGKTALSSAIVNDLSSWFLLV 234 (868)
Q Consensus 207 l~ll~s~~g~l~ls~a~v~D~~~~~ll~ 234 (868)
.+....+++..++-+=++|-....+-.-
T Consensus 169 ~~~~~~~~~~~vv~aH~lDa~sT~vGid 196 (273)
T PF01889_consen 169 VNILTDPLGLLVVFAHLLDASSTFVGID 196 (273)
T ss_pred hhhhccchhHHHHHHHHHhHHHHhhhee
Confidence 4556667788888887777666554443
No 199
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=27.58 E-value=6.1e+02 Score=27.50 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=53.3
Q ss_pred HHHHHHHhhcccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-hhhhhHHHHHHhhccc
Q 043953 353 LPSFIVVSGLRTNFLELFSKT-KLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLM-NTKGVMALIVLNEGRS 430 (868)
Q Consensus 353 ~plfFv~~Gl~~dl~~l~~~~-~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m-~~rG~v~lil~~~~~~ 430 (868)
+.+-+...|++++...+.... .+......++.-++.-++..+..+..++.+......+-+.. .|-|..+.++......
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~~g 93 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLLKG 93 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHhCC
Confidence 444556778888877665421 12234444445566667777777777776544332222221 3444444444333221
Q ss_pred cccCchHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 043953 431 LKAIDNILMAAMVFMLLLMTGLVGPIFFLANK 462 (868)
Q Consensus 431 ~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~~ 462 (868)
|.+.-..++....+.+.++.|+.-.++.
T Consensus 94 ----n~~la~~~~~~stlls~vt~Pl~l~~~~ 121 (286)
T TIGR00841 94 ----DMALSISMTTCSTLLALGMMPLLLYIYA 121 (286)
T ss_pred ----CHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333334446666776665553
No 200
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=27.22 E-value=1.1e+02 Score=29.01 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=27.4
Q ss_pred EEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCC
Q 043953 574 QPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPT 610 (868)
Q Consensus 574 ~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~ 610 (868)
.-..++=|...||..|.++|++.++|++|-|......
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGESP 108 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB--
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCCC
Confidence 4566777889999999999999999999999876643
No 201
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=27.19 E-value=1.2e+02 Score=34.25 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043953 124 LGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFV 170 (868)
Q Consensus 124 lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~ 170 (868)
.|..+.++..|.+.|++.+++..++...+++.-+. .+.+.-..++.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~-q~~i~pl~~f~ 162 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVP-QYLIMPLLGFL 162 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHH-HHHHHHHHHHh
Confidence 67778889999999999999999888766543222 34444333333
No 202
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=27.18 E-value=4.2e+02 Score=32.44 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=15.4
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHH
Q 043953 38 QRQNPMMRAVPLLATELGFAIVAIRLF 64 (868)
Q Consensus 38 ~~~~pl~~~l~~lll~i~lil~~~~l~ 64 (868)
..-||+ ...+.+-...++.++++.+.
T Consensus 461 ~sl~p~-s~al~~AAiaGV~LF~SglI 486 (643)
T PF10136_consen 461 HSLDPF-SPALLYAAIAGVWLFLSGLI 486 (643)
T ss_pred HhcCcc-ccHHHHHHHHHHHHHHHHHH
Confidence 457888 55555555556666555554
No 203
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=25.87 E-value=8.5e+02 Score=26.16 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=30.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhCc
Q 043953 43 MMRAVPLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIGP 88 (868)
Q Consensus 43 l~~~l~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLGP 88 (868)
+.+=+|+.+-...-++..+++..++++. .|..+-....|+++|.
T Consensus 54 ~~fL~~l~~G~~~gi~~~s~~i~~ll~~--yp~~t~~fF~GLIlgS 97 (257)
T PF04018_consen 54 LKFLLPLGIGILIGILLFSKVISYLLEN--YPIPTYSFFFGLILGS 97 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHH
Confidence 4445566666666677777777777775 4566677777777773
No 204
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=25.57 E-value=1.1e+03 Score=27.47 Aligned_cols=128 Identities=11% Similarity=0.094 Sum_probs=64.5
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHH----HhHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043953 324 GFIFGLIIPNGELAINIMERTEEFIS----GVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALC 399 (868)
Q Consensus 324 afvaGl~l~~~~~~~~l~~~l~~~~~----~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~ 399 (868)
..+.|.++.+.|.-+++.+|+..+-+ .+.+-.++..+..-+ +|+ +.+++.++++|-++ -+.
T Consensus 67 ilvtG~~lA~sp~v~r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~i---------nWG--~gLV~gallArela----rr~ 131 (453)
T PF02667_consen 67 ILVTGYALASSPPVKRLLDRLASLPKTPRQAIVLVALVSMIASWI---------NWG--FGLVVGALLARELA----RRV 131 (453)
T ss_pred HHHHHHHHhCChHHHHHHHHHHhcCCCCcceeeHHHHHHHHHHHH---------Hhh--HHHHHHHHHHHHHH----Hhc
Confidence 56788999997777777777776522 222222222222211 343 23445556666442 122
Q ss_pred hCCChHHH---HH---HHHHHhhhhhHHHHHHhhccc----cc------cC--chHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043953 400 YGMPVRDG---VA---LGGLMNTKGVMALIVLNEGRS----LK------AI--DNILMAAMVFMLLLMTGLVGPIFFLAN 461 (868)
Q Consensus 400 ~~~~~~e~---~~---lg~~m~~rG~v~lil~~~~~~----~~------ii--~~~~~~~lv~~~lv~t~i~~plv~~l~ 461 (868)
-+++.+-- -+ +.|-++.-|...+..++-+.. .+ +| ++..|+-.-+...+..+++.|++.++.
T Consensus 132 ~~vdYpllvAaaY~g~~vWh~GlSgS~pL~~At~g~~l~~~~~~~~~~~vIP~seTif~~~nli~~~~~~v~~pli~~~m 211 (453)
T PF02667_consen 132 KGVDYPLLVAAAYSGFVVWHGGLSGSAPLLVATPGHFLEKIIGGLVITGVIPTSETIFSPYNLIIVVVLLVVLPLINYLM 211 (453)
T ss_pred cCCcHHHHHHHHHHHHHHHhccccchhHHHhcCCCCcHHHHhcccccCCccCcchhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 23333211 11 222234444455555543221 12 33 456666555555555677889888877
Q ss_pred hHhhH
Q 043953 462 KKAKR 466 (868)
Q Consensus 462 ~~~~~ 466 (868)
.|+++
T Consensus 212 ~P~~~ 216 (453)
T PF02667_consen 212 APKPE 216 (453)
T ss_pred CCCCc
Confidence 77654
No 205
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=25.38 E-value=7.3e+02 Score=25.24 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=29.4
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHhhC
Q 043953 38 QRQNPMMRAVPLLATELGFAIVAIRLFIILLKPLHQPRFIPELLTSILIG 87 (868)
Q Consensus 38 ~~~~pl~~~l~~lll~i~lil~~~~l~~~l~~rl~~P~iv~~IlaGilLG 87 (868)
+++||+--.+-.-++-++++-+++.+-.++.+.-..=.++..++.|++-|
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgG 138 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGG 138 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhh
Confidence 35777322221223334555566667777777755666777778877766
No 206
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=25.31 E-value=1.1e+03 Score=27.30 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=21.7
Q ss_pred HHHHHhhcccCCCchHHHHHHHHhhCcccccCcCC
Q 043953 62 RLFIILLKPLHQPRFIPELLTSILIGPSTFGTFES 96 (868)
Q Consensus 62 ~l~~~l~~rl~~P~iv~~IlaGilLGPs~Lg~~~~ 96 (868)
.+...+-++.++|+-..-.+++++.= .+|...+
T Consensus 13 ~l~~~~~~p~~~~~~~~a~~Ga~l~l--~~giv~~ 45 (424)
T COG1055 13 TLVYVLIRPRKLPRAWAALLGALLAL--FLGIVTP 45 (424)
T ss_pred HHHHHhhhcCcCchHHHHHHHHHHHH--HHcCCCH
Confidence 34455556788999999888876653 3444444
No 207
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=25.15 E-value=1.1e+03 Score=27.00 Aligned_cols=96 Identities=16% Similarity=-0.025 Sum_probs=56.7
Q ss_pred HHhhcccCCCchH-HHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHHHHHHHHHHHHhhc-cChHHH
Q 043953 65 IILLKPLHQPRFI-PELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSSLGLTFYMFLVGLE-MDVSAV 142 (868)
Q Consensus 65 ~~l~~rl~~P~iv-~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~lgl~~llF~~Gle-~d~~~l 142 (868)
+.+-+.+++|..+ .+|+.-.++-- .+..++. ..+ ......++++.=-.-.+|+-+|+. +|++++
T Consensus 281 ~il~kf~~~P~~va~MIil~a~lk~--~nlvp~~-------i~~-----GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev 346 (438)
T COG3493 281 GILGKFIGLPGPVAFMIILVAILKA--ANLVPKE-------IEE-----GAKQLSQFFSKNLTWPLMAGIGVAYTDLNEV 346 (438)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHH--hCcCCHH-------HHH-----HHHHHHHHHHHhhHHHHHHhhhhccccHHHH
Confidence 3444557799777 34444344432 2333330 111 113455556655566688999997 999999
Q ss_pred HhhhhhHHHHHHHHHHHH-HHHHHHHHHHhhhc
Q 043953 143 KRMEKKSLSIAFAGIVIP-FCIGAALHFVPIHE 174 (868)
Q Consensus 143 ~~~~k~~~~ia~~~~llp-~~~g~~~~~~l~~~ 174 (868)
-+......++-.+++.+. ...+++++++++.+
T Consensus 347 ~~alt~~~vii~~~vVl~~i~~~~f~grl~~~Y 379 (438)
T COG3493 347 AAALTWQNVIIALSVVLGAILGGAFVGRLMGFY 379 (438)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888776666655555555 55566677777654
No 208
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=24.79 E-value=6.9e+02 Score=24.77 Aligned_cols=15 Identities=20% Similarity=0.620 Sum_probs=12.5
Q ss_pred chHHHHHHHHhhCcc
Q 043953 75 RFIPELLTSILIGPS 89 (868)
Q Consensus 75 ~iv~~IlaGilLGPs 89 (868)
.-+..+++|+++||.
T Consensus 34 ~~i~~vlaavllGP~ 48 (160)
T TIGR02359 34 QHFVNVIAGVLLGPW 48 (160)
T ss_pred hHHHHHHHHHHHchH
Confidence 457789999999994
No 209
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=24.64 E-value=2.3e+02 Score=30.64 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=33.2
Q ss_pred ceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeee
Q 043953 663 LKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVY 700 (868)
Q Consensus 663 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~ 700 (868)
.+|+|.+.||+|+--+|.+..++.++ .++.+++|..
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~ 57 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDH 57 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecC
Confidence 59999999999999999999999988 8999999964
No 210
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=24.53 E-value=9.4e+02 Score=26.81 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=38.5
Q ss_pred HHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043953 126 LTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPI 172 (868)
Q Consensus 126 l~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~ 172 (868)
+-+..|..|..+++..+.+.+-....+++..++++...++....++.
T Consensus 205 Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~ 251 (326)
T PRK05274 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIG 251 (326)
T ss_pred HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheee
Confidence 44566778999999999999999999998888888877777776663
No 211
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=23.60 E-value=1.6e+02 Score=28.83 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCcccEEEEecccccccchhhhHHHh
Q 043953 762 EELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHASVLVVQQSSSALFRSESLQVKR 841 (868)
Q Consensus 762 ~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~SVLVvqq~~~~~~~~~~~~~~~ 841 (868)
+++.+.++++.++||++||--..+..+|+.. -....|+.+. ..++|++|-.++... .+++...++
T Consensus 87 ~~i~~~~~~l~~~~D~viid~~g~~~~~~~~----------~~~~~dl~~~----~~~~vilV~~~~~~~-~~~~~~~~~ 151 (166)
T TIGR00347 87 EELSKHLRTLEQKYDFVLVEGAGGLCVPITE----------EYTTADLIKL----LQLPVILVVRVKLGT-INHTLLTVE 151 (166)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCccccCCCC----------CCcHHHHHHH----hCCCEEEEECCCCcH-HHHHHHHHH
Confidence 3566677777788999998766543333221 1234555554 345666666665555 455555554
Q ss_pred hhcc
Q 043953 842 KFGR 845 (868)
Q Consensus 842 ~~~~ 845 (868)
.+++
T Consensus 152 ~l~~ 155 (166)
T TIGR00347 152 HARQ 155 (166)
T ss_pred HHHH
Confidence 4443
No 212
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=23.29 E-value=1.2e+03 Score=26.88 Aligned_cols=147 Identities=14% Similarity=0.065 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCCCchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchhhHHHHHHHHHH
Q 043953 305 GVVVCGFIADGCGMHSMAGGFIFGLIIPNGELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTIV 384 (868)
Q Consensus 305 ~~~~~~~lae~~g~~~~lGafvaGl~l~~~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~~ 384 (868)
+.+..+.++..+.=..++|++.+-+++.. ..+---...|+|+...| +..-..+.+. ..-++.+..
T Consensus 198 LGl~~~ai~~ll~~~~~~as~~F~LAlny-----------KQMeLY~A~pfF~fLLg-~c~k~k~~~~---f~ri~~ia~ 262 (510)
T KOG2575|consen 198 LGLTLYAIAALLKNFYVLASVLFVLALNY-----------KQMELYHALPFFAFLLG-SCLKPKLFNS---FARIIKIAL 262 (510)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhH-----------HHHHHHhchHHHHHHHH-HHhcccchHH---HHHHHHHHH
Confidence 34445566666666778898888887742 11223456788888888 5444443331 223344455
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhhHHHHHHhhccccc-------cCchHHHHHHHHHHHHHHHhHHHHH
Q 043953 385 ATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGVMALIVLNEGRSLK-------AIDNILMAAMVFMLLLMTGLVGPIF 457 (868)
Q Consensus 385 ~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~v~lil~~~~~~~~-------ii~~~~~~~lv~~~lv~t~i~~plv 457 (868)
..++-++.++++-...+-...+-+- =+.=-.||..|=-++|.+-... +...+....+.+..++ -...|..+
T Consensus 263 ~Vv~TF~iiw~P~~~~~~~~~qvl~-RlFPf~RGlfEDKVANfWCt~n~~~K~k~~ft~q~~~~iSl~~Tl-i~~LPs~v 340 (510)
T KOG2575|consen 263 AVVGTFVIIWLPFLLSGDTALQVLH-RLFPFARGLFEDKVANFWCTFNVFLKIKELFTQQQLQVISLAATL-IGSLPSMV 340 (510)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHH-HhCchhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHhHHHH
Confidence 6667777777777666633333211 1112458999888888775433 2333333333222222 12345566
Q ss_pred HHhhhHhhHhh
Q 043953 458 FLANKKAKRTR 468 (868)
Q Consensus 458 ~~l~~~~~~~~ 468 (868)
..+.+|+++..
T Consensus 341 ~l~L~P~~~~f 351 (510)
T KOG2575|consen 341 VLFLRPTNKGF 351 (510)
T ss_pred HHhhcccccch
Confidence 66667776643
No 213
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=23.12 E-value=1.4e+03 Score=27.86 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043953 261 AMLPIICFILIFWFVLRPCIAWMIKET 287 (868)
Q Consensus 261 ~~~~~~~~~~~~~~v~r~~~~~l~~~~ 287 (868)
.++..++.+.+.+++++|...|+....
T Consensus 418 Pllt~li~~~l~~~viGp~~~~i~~~l 444 (631)
T PRK09765 418 PVLGTLGAGSLMLFVVGEPVAWINNSL 444 (631)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667777888888776544
No 214
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.92 E-value=2.3e+02 Score=25.80 Aligned_cols=40 Identities=18% Similarity=0.078 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHhh
Q 043953 155 AGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAISLTI 194 (868)
Q Consensus 155 ~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~ 194 (868)
.++++|.++|.+++.++-..++.........+++|++.+.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 3466788888888888876664332223344555555543
No 215
>PRK00536 speE spermidine synthase; Provisional
Probab=22.41 E-value=3e+02 Score=29.60 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCc-cccchhhh
Q 043953 732 ELDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPE-LGPVGETL 810 (868)
Q Consensus 732 ~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~e-LG~igd~l 810 (868)
++-.+++.++... -++.|+.-.. . ..+...+.||++|+=-... +| ...+-..|
T Consensus 108 ~~~k~~lP~~~~~-~~DpRv~l~~-------~---~~~~~~~~fDVIIvDs~~~---------------~~fy~~~~~~L 161 (262)
T PRK00536 108 DSFISFFPHFHEV-KNNKNFTHAK-------Q---LLDLDIKKYDLIICLQEPD---------------IHKIDGLKRML 161 (262)
T ss_pred HHHHHHCHHHHHh-hcCCCEEEee-------h---hhhccCCcCCEEEEcCCCC---------------hHHHHHHHHhc
Confidence 4455666666543 3456766543 1 1222235799999874211 11 12233344
Q ss_pred ccCCCCCcccEEEEecccccccchhh
Q 043953 811 VSSNSTAHASVLVVQQSSSALFRSES 836 (868)
Q Consensus 811 as~d~~~~~SVLVvqq~~~~~~~~~~ 836 (868)
.. .-++|+|-..+-...+..
T Consensus 162 ~~------~Gi~v~Qs~sp~~~~~~~ 181 (262)
T PRK00536 162 KE------DGVFISVAKHPLLEHVSM 181 (262)
T ss_pred CC------CcEEEECCCCcccCHHHH
Confidence 33 468888877665544433
No 216
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=22.40 E-value=6.3e+02 Score=28.76 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---CcchHHHHHHHHHHh
Q 043953 117 LLETFSSLGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALHFVPIHEGITR---ESPNLGALFWAISLT 193 (868)
Q Consensus 117 ~l~~la~lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~---~~~~~~~l~lg~~ls 193 (868)
++-.++-+|+..++-..-.+.+.+.+.+.++-.....+...+..++.-....+++.+.-+.. .........++..-|
T Consensus 179 ~i~~~~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~~~l~Af~T~SS 258 (390)
T PF00375_consen 179 WIMKLAPIGVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAMLPALLTAFSTSSS 258 (390)
T ss_dssp HHTTTHHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHHHhhccCC
Confidence 33345567777777777778888888877755444433333323333223333222211000 001122223333345
Q ss_pred hccHHHHHHHHHh-cCcccChhHHHH--HHHHHHHHHHHHHHHHHHH
Q 043953 194 ITSFPDLARILSD-VKLLHTDIGKTA--LSSAIVNDLSSWFLLVLVI 237 (868)
Q Consensus 194 ~Ts~~vv~~iL~e-l~ll~s~~g~l~--ls~a~v~D~~~~~ll~~~~ 237 (868)
....|+..+.++| +|. ++++.+.+ +++.+-.|..++.......
T Consensus 259 ~atlP~~~~~~~~~~gv-~~~i~~fv~Plg~t~n~~G~a~~~~~~~i 304 (390)
T PF00375_consen 259 AATLPVTIECLEENLGV-SRSIASFVLPLGATINMDGTALYIAIAAI 304 (390)
T ss_dssp TTSHHHHHHHHHT-TT---HHHHHHHHHHHTTS--HHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHhcCC-CcccceeeechhccccCCccchHHHHHHH
Confidence 5667999999998 465 77777766 4555556666554433333
No 217
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=22.22 E-value=2.6e+02 Score=31.75 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=30.1
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeec
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYN 701 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~ 701 (868)
..++++.+.||.|+--|+.++.+- +.++..++|..+
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~~ 207 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFNE 207 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 469999999999999999888663 668899999743
No 218
>PRK04148 hypothetical protein; Provisional
Probab=22.16 E-value=1.2e+02 Score=29.21 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=30.5
Q ss_pred EEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCC
Q 043953 575 PLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPT 610 (868)
Q Consensus 575 ~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~ 610 (868)
-..++=|...|+..|.++|++.++|++|-|......
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 445566888999999999999999999999876653
No 219
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=22.11 E-value=1.7e+02 Score=28.11 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=26.9
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEee
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYV 699 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~ 699 (868)
+|++.|.||+|+--.|.++.+...+. -.+.++++.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeC
Confidence 57899999999999999988876542 356666664
No 220
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=21.98 E-value=5.2e+02 Score=25.65 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=20.0
Q ss_pred CcchHHHHHHHHHhhcCCCeEEEEEEe
Q 043953 672 GPDDREALFYAWRMAGKPGVNLTVVRY 698 (868)
Q Consensus 672 G~ddreAL~~A~rma~~~~v~ltvl~~ 698 (868)
.+.|.|+++.|++|++ .+.+++++-+
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~ 43 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVI 43 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEE
Confidence 4788999999999987 4456666555
No 221
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=21.97 E-value=3.4e+02 Score=29.99 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=22.0
Q ss_pred HHHHhhcccCCCchHHHHHHHHhhCccc
Q 043953 63 LFIILLKPLHQPRFIPELLTSILIGPST 90 (868)
Q Consensus 63 l~~~l~~rl~~P~iv~~IlaGilLGPs~ 90 (868)
.-..+...+|+|+++.-+++|..+|-++
T Consensus 33 ~~~~ii~~~RlPR~l~a~l~G~~La~sG 60 (311)
T PF01032_consen 33 IAQFIIWDLRLPRILAAILVGAALALSG 60 (311)
T ss_dssp HHHHHHCCTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 3345667789999999999999888543
No 222
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=21.64 E-value=1.3e+02 Score=33.86 Aligned_cols=95 Identities=8% Similarity=0.053 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHhHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH-H-HH
Q 043953 337 AINIMERTEEFISGVWLPSF-IVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVAL-G-GL 413 (868)
Q Consensus 337 ~~~l~~~l~~~~~~l~~plf-Fv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~l-g-~~ 413 (868)
.++-.+.+..++..+|.|+. |.-.|=.+.+..+.+ |+.+-+-+++.++.-.+..++..+.++-|.+..-++ + ..
T Consensus 39 p~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~---~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a 115 (408)
T KOG2722|consen 39 PRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQ---WWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCA 115 (408)
T ss_pred CHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEEee
Confidence 44445556666678999986 888888888877765 666767777777777888889999999887765322 1 01
Q ss_pred HhhhhhHHHHHH-hhccccccC
Q 043953 414 MNTKGVMALIVL-NEGRSLKAI 434 (868)
Q Consensus 414 m~~rG~v~lil~-~~~~~~~ii 434 (868)
.+.-|-..+++. .+..+.+..
T Consensus 116 ~GN~gnlpL~Lv~alc~~~~~P 137 (408)
T KOG2722|consen 116 FGNSGNLPLILVPALCDEDGIP 137 (408)
T ss_pred cCCcCCcHHHHhHHHhcccCCC
Confidence 123455555443 344444443
No 223
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=21.42 E-value=9.8e+02 Score=26.02 Aligned_cols=23 Identities=4% Similarity=0.072 Sum_probs=13.4
Q ss_pred eEEEeecCCCChhhHHHHHHhhc
Q 043953 485 RILTCIHSVGNLSGIINLLELSN 507 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~ 507 (868)
.+.+.+....+.+.+.+++....
T Consensus 187 ~~~v~V~y~~d~~~~~~il~~~~ 209 (286)
T PRK10334 187 EFIIGVAYDSDIDQVKQILTNII 209 (286)
T ss_pred EEEEEecCCCCHHHHHHHHHHHH
Confidence 34555665666666666665444
No 224
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=21.37 E-value=1.8e+02 Score=34.75 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=39.3
Q ss_pred HHhHHHHHHHHhhcccccccccchhhHHHHHHHHH---------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhhhh
Q 043953 349 SGVWLPSFIVVSGLRTNFLELFSKTKLFYLLLTTI---------VATSAKILSTVLVALCYGMPVRDGVALGGLMNTKGV 419 (868)
Q Consensus 349 ~~l~~plfFv~~Gl~~dl~~l~~~~~~~~~~~ii~---------~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m~~rG~ 419 (868)
..+++|-...-.|.+++-..+... .+-+..+.+ +....|+.+. ....++++++|.+.+|.+.+.---
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n--~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDP 177 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRN--IGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDP 177 (575)
T ss_pred HHHhhchhhhcccceechhhhhhh--hHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCc
Confidence 456666666678888887766652 222211111 1122222221 223357899999999998766554
Q ss_pred HHH
Q 043953 420 MAL 422 (868)
Q Consensus 420 v~l 422 (868)
|..
T Consensus 178 Vtv 180 (575)
T KOG1965|consen 178 VTV 180 (575)
T ss_pred hHH
Confidence 443
No 225
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=21.32 E-value=9.3e+02 Score=25.10 Aligned_cols=67 Identities=16% Similarity=0.355 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchh-------hhHHHHHHHhhcCC
Q 043953 263 LPIICFILIFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMH-------SMAGGFIFGLIIPN 333 (868)
Q Consensus 263 ~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~-------~~lGafvaGl~l~~ 333 (868)
.+.++++.++..+.|++...-.|.. ....+......++..++.+..++..... ..+++++.++..-+
T Consensus 95 ~G~l~lvGl~~Ll~RR~~~~~vr~~----s~~~D~~~L~lLl~i~~tG~~~~~~~~~~~~~~~~~~v~~w~~sL~tf~ 168 (222)
T PF02665_consen 95 AGLLALVGLLILLVRRLFDPRVRAI----STPSDYFVLLLLLAIVLTGLLMEGVRIAGTDYWYRETVGPWLRSLFTFN 168 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHH------HHHHHHHHHHHHHHHHHHHCHHHHGCGTTSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHhcCCccccc----CCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhcC
Confidence 3344444555566677665444443 1124455555666666666666655432 34677777776544
No 226
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=21.30 E-value=2e+02 Score=27.66 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=43.3
Q ss_pred chhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecCCCC
Q 043953 585 IHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDRGIG 646 (868)
Q Consensus 585 m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~ 646 (868)
..+.|..++++.+++.||+|...+. +|.........+.+.+++-++-+++| +++|--+.
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~T 100 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNM--DGTEGPRTERARKFANRLEGRFGLPV-VLVDERLS 100 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCC--CCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCcC
Confidence 4688999999999999999987653 56544444457778888777668887 45665443
No 227
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.68 E-value=7e+02 Score=27.90 Aligned_cols=139 Identities=12% Similarity=-0.028 Sum_probs=67.6
Q ss_pred CCCccccchhhHHHHHHHhccCCcceEEEecCCCCCccccccccccccCccceEEEeeccCcchHHHHHHHHHhhcCCCe
Q 043953 612 DGELQGENHQIREVNNNLLAKAPCSIGILVDRGIGSAVITSAQSSLHGRQGLKLCMLFIGGPDDREALFYAWRMAGKPGV 691 (868)
Q Consensus 612 ~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~A~rma~~~~v 691 (868)
-|.++..-....++.+.|-+..+.++-|-+-=+.. . .+.||.+-.|++++|+++.+...+
T Consensus 184 GGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~-----------------~---~~~~G~~~~e~~~~~~~l~~~G~v 243 (343)
T cd04734 184 GGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGD-----------------E---DTEGGLSPDEALEIAARLAAEGLI 243 (343)
T ss_pred CCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehh-----------------h---ccCCCCCHHHHHHHHHHHHhcCCC
Confidence 34555444456677777777765554332211100 0 135788889999999999886532
Q ss_pred EEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhh
Q 043953 692 NLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTM 771 (868)
Q Consensus 692 ~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~ 771 (868)
. .+++.......... ....... ...+...+-++.+.+++... ..|... =-+.+.++..+++++
T Consensus 244 d--~i~vs~g~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~ik~~~~--ipvi~~-G~i~~~~~~~~~l~~- 306 (343)
T cd04734 244 D--YVNVSAGSYYTLLG---LAHVVPS--------MGMPPGPFLPLAARIKQAVD--LPVFHA-GRIRDPAEAEQALAA- 306 (343)
T ss_pred C--EEEeCCCCCCcccc---cccccCC--------CCCCcchhHHHHHHHHHHcC--CCEEee-CCCCCHHHHHHHHHc-
Confidence 2 23332111000000 0000000 00111123355666665431 223221 112345666677653
Q ss_pred cCCccEEEEccCCCCCC
Q 043953 772 YGEYELYIIGRGDNVKS 788 (868)
Q Consensus 772 ~~~~DL~iVGr~~~~~s 788 (868)
...|++.+||.--.++
T Consensus 307 -~~~D~V~~gR~~ladP 322 (343)
T cd04734 307 -GHADMVGMTRAHIADP 322 (343)
T ss_pred -CCCCeeeecHHhHhCc
Confidence 4699999999854333
No 228
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=20.63 E-value=2.1e+02 Score=27.82 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=24.7
Q ss_pred eEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEee
Q 043953 664 KLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYV 699 (868)
Q Consensus 664 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~ 699 (868)
++++.|.||+|+.-.|.++.+...+- .++++.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~d 32 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFID 32 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEe
Confidence 57899999999999999999998873 555553
No 229
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=20.61 E-value=7.5e+02 Score=23.61 Aligned_cols=105 Identities=13% Similarity=0.040 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCch---HHHHHHHHhhCcccccCcCCCCchhHHhhhhhcCCCcchHHHHHHHH
Q 043953 47 VPLLATELGFAIVAIRLFIILLKPLHQPRF---IPELLTSILIGPSTFGTFESLSPDTIVKQMMKLFPYENTVLLETFSS 123 (868)
Q Consensus 47 l~~lll~i~lil~~~~l~~~l~~rl~~P~i---v~~IlaGilLGPs~Lg~~~~~~~~~~~~~~~~lfp~~~~~~l~~la~ 123 (868)
...++.|+++++.+..+..++.+-+++|-+ +|.++.=.++ .++.++.. +.+ ...-..+++
T Consensus 4 ~~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL---~~~iv~l~-------wv~-------~~a~~Ll~~ 66 (128)
T COG1380 4 VMQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLL---ALKIVKLE-------WVE-------RGATFLLRN 66 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH---HhCCccHH-------HHH-------HHHHHHHHH
Confidence 346789999999999999999888877643 3332221111 13333320 110 112223333
Q ss_pred HHHHHHHHHHhhccChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043953 124 LGLTFYMFLVGLEMDVSAVKRMEKKSLSIAFAGIVIPFCIGAALH 168 (868)
Q Consensus 124 lgl~~llF~~Gle~d~~~l~~~~k~~~~ia~~~~llp~~~g~~~~ 168 (868)
+++.|.=-.+|+=-..+.++..+-+.+...+.+.++.+.....+.
T Consensus 67 m~llFVPa~VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~ 111 (128)
T COG1380 67 MALLFVPAGVGVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVV 111 (128)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333334566446677777777777776666666654444333
No 230
>PRK01844 hypothetical protein; Provisional
Probab=20.34 E-value=2.6e+02 Score=23.79 Aligned_cols=30 Identities=10% Similarity=0.352 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043953 258 FLMAMLPIICFILIFWFVLRPCIAWMIKET 287 (868)
Q Consensus 258 ~l~~~~~~~~~~~~~~~v~r~~~~~l~~~~ 287 (868)
.+..++++++.+++++|+.|..+...++.+
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk~N 36 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQKN 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334445555556667777787777666665
No 231
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=20.04 E-value=1.2e+03 Score=25.85 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=53.3
Q ss_pred HhHHHHHHHHhhcccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH---hhhhhHHHHHH
Q 043953 350 GVWLPSFIVVSGLRTNFLELFSKT-KLFYLLLTTIVATSAKILSTVLVALCYGMPVRDGVALGGLM---NTKGVMALIVL 425 (868)
Q Consensus 350 ~l~~plfFv~~Gl~~dl~~l~~~~-~~~~~~~ii~~~~~~K~l~~~l~~~~~~~~~~e~~~lg~~m---~~rG~v~lil~ 425 (868)
..++.+.|...|+.+....+.... .|...++.++.-++.=.+.+++.++.+++|. .+..|+++ .|-|..+.++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~--~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPP--ELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHhHHheeeCCCchhHHHHH
Confidence 455667777889998876665422 6777778888888888888888888887554 45566554 55666665554
Q ss_pred hhc
Q 043953 426 NEG 428 (868)
Q Consensus 426 ~~~ 428 (868)
..+
T Consensus 119 ~lA 121 (319)
T COG0385 119 YLA 121 (319)
T ss_pred HHh
Confidence 444
Done!