Query 043953
Match_columns 868
No_of_seqs 338 out of 2148
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 4.7E-23 1.6E-27 227.3 11.7 300 117-460 59-383 (388)
2 3mt0_A Uncharacterized protein 99.7 3.2E-16 1.1E-20 169.2 22.2 267 484-831 8-281 (290)
3 3olq_A Universal stress protei 99.7 8.7E-16 3E-20 167.9 19.3 289 484-828 8-307 (319)
4 3cis_A Uncharacterized protein 99.7 2E-15 6.7E-20 164.6 19.7 279 483-826 19-306 (309)
5 3ab8_A Putative uncharacterize 99.7 3.7E-15 1.3E-19 158.8 20.4 261 485-825 2-268 (268)
6 3loq_A Universal stress protei 99.6 5.7E-16 2E-20 167.6 12.6 267 484-828 23-292 (294)
7 3s3t_A Nucleotide-binding prot 98.8 2E-08 6.8E-13 95.9 10.6 136 484-640 6-145 (146)
8 3hgm_A Universal stress protei 98.8 1.8E-08 6E-13 96.3 9.4 138 485-639 4-146 (147)
9 3fdx_A Putative filament prote 98.7 4.1E-08 1.4E-12 93.3 11.1 136 485-640 3-142 (143)
10 1mjh_A Protein (ATP-binding do 98.7 1.1E-07 3.8E-12 92.5 14.1 142 484-640 6-157 (162)
11 3idf_A USP-like protein; unive 98.7 6.1E-08 2.1E-12 91.6 11.3 133 485-640 3-137 (138)
12 3fg9_A Protein of universal st 98.7 4.8E-08 1.6E-12 94.6 9.5 136 484-640 16-155 (156)
13 3dlo_A Universal stress protei 98.7 7.4E-08 2.5E-12 93.6 10.8 129 484-640 25-154 (155)
14 2dum_A Hypothetical protein PH 98.7 1.2E-07 4.1E-12 93.1 11.8 146 484-643 6-157 (170)
15 2z08_A Universal stress protei 98.6 4.9E-08 1.7E-12 92.3 8.3 132 485-640 4-136 (137)
16 3s3t_A Nucleotide-binding prot 98.6 2E-07 6.8E-12 88.8 12.5 138 662-825 5-146 (146)
17 3tnj_A Universal stress protei 98.6 8.7E-08 3E-12 91.9 8.8 139 484-641 7-146 (150)
18 1tq8_A Hypothetical protein RV 98.6 9.6E-08 3.3E-12 93.6 9.1 137 483-640 17-156 (163)
19 2gm3_A Unknown protein; AT3G01 98.6 4.9E-07 1.7E-11 89.2 13.1 144 484-643 6-164 (175)
20 3dlo_A Universal stress protei 98.6 1.2E-07 4.3E-12 91.9 8.4 129 662-825 24-155 (155)
21 3fdx_A Putative filament prote 98.5 3.3E-07 1.1E-11 87.0 10.8 137 663-825 2-143 (143)
22 3hgm_A Universal stress protei 98.5 1.5E-07 5.2E-12 89.7 8.4 140 662-824 2-147 (147)
23 3tnj_A Universal stress protei 98.5 1.7E-07 5.8E-12 89.8 7.8 142 662-827 6-148 (150)
24 1mjh_A Protein (ATP-binding do 98.5 6.6E-07 2.2E-11 87.0 11.6 145 662-827 5-160 (162)
25 2z08_A Universal stress protei 98.5 4.9E-07 1.7E-11 85.3 10.0 134 662-825 2-137 (137)
26 2dum_A Hypothetical protein PH 98.4 6.5E-07 2.2E-11 87.8 10.5 146 662-828 5-158 (170)
27 3idf_A USP-like protein; unive 98.4 1.5E-06 5.2E-11 81.8 12.1 135 663-825 2-138 (138)
28 1tq8_A Hypothetical protein RV 98.4 5.4E-07 1.9E-11 88.1 9.0 139 662-828 17-160 (163)
29 1jmv_A USPA, universal stress 98.4 1.5E-06 5E-11 82.3 11.1 131 485-642 4-138 (141)
30 3fg9_A Protein of universal st 98.3 6.1E-07 2.1E-11 86.7 6.7 136 662-825 15-156 (156)
31 1q77_A Hypothetical protein AQ 98.2 5.3E-06 1.8E-10 78.1 9.9 130 484-640 5-137 (138)
32 1jmv_A USPA, universal stress 98.2 1.5E-06 5.1E-11 82.2 5.8 136 662-827 2-139 (141)
33 2gm3_A Unknown protein; AT3G01 98.1 1.1E-05 3.9E-10 79.2 11.6 148 662-828 5-165 (175)
34 3mt0_A Uncharacterized protein 98.1 3.5E-06 1.2E-10 90.2 7.8 136 483-643 134-277 (290)
35 3ab8_A Putative uncharacterize 98.1 3.7E-06 1.3E-10 88.8 7.0 147 663-827 1-150 (268)
36 1q77_A Hypothetical protein AQ 98.0 2.4E-05 8.1E-10 73.6 11.0 39 662-700 4-43 (138)
37 3cis_A Uncharacterized protein 98.0 5.4E-06 1.8E-10 89.6 7.2 141 662-828 19-163 (309)
38 3olq_A Universal stress protei 98.0 6.6E-06 2.3E-10 89.1 7.8 147 483-646 156-309 (319)
39 3loq_A Universal stress protei 97.9 1.7E-05 5.8E-10 85.0 8.1 119 483-640 170-288 (294)
40 3zux_A Transporter, ASBTNM; tr 97.8 0.015 5.3E-07 63.2 30.0 106 122-241 45-156 (332)
41 3g40_A Na-K-CL cotransporter; 94.7 0.59 2E-05 48.9 15.3 220 484-785 21-255 (294)
42 3zux_A Transporter, ASBTNM; tr 72.7 38 0.0013 36.2 13.6 125 325-461 28-155 (332)
43 1ni5_A Putative cell cycle pro 59.0 36 0.0012 37.8 10.4 39 662-700 13-52 (433)
44 1efv_B Electron transfer flavo 57.6 15 0.00053 37.8 6.5 26 672-698 39-66 (255)
45 1efp_B ETF, protein (electron 56.1 16 0.00055 37.6 6.3 26 672-698 36-63 (252)
46 2k3c_A TMIX peptide; membrane 55.8 0.19 6.4E-06 34.8 -5.6 27 307-333 4-30 (33)
47 2l0e_A Sodium/hydrogen exchang 54.0 2.5 8.5E-05 29.1 -0.2 27 183-209 4-30 (33)
48 1o97_C Electron transferring f 52.3 13 0.00043 38.6 4.8 27 672-698 36-64 (264)
49 1wy5_A TILS, hypothetical UPF0 49.2 23 0.0008 37.5 6.5 39 662-700 24-63 (317)
50 3a2k_A TRNA(Ile)-lysidine synt 48.0 22 0.00075 40.0 6.3 39 662-700 18-56 (464)
51 1zun_A Sulfate adenylyltransfe 45.2 23 0.00078 37.9 5.6 37 663-699 47-83 (325)
52 2wsi_A FAD synthetase; transfe 38.7 1.4E+02 0.0047 31.3 10.4 93 663-786 54-169 (306)
53 1iv0_A Hypothetical protein; r 33.8 91 0.0031 26.9 6.6 56 584-643 38-93 (98)
54 3fwk_A FMN adenylyltransferase 30.4 1.5E+02 0.0053 31.1 8.9 23 663-685 59-81 (308)
55 2k4m_A TR8_protein, UPF0146 pr 24.8 1.1E+02 0.0036 28.8 5.6 39 574-612 91-129 (153)
56 2oq2_A Phosphoadenosine phosph 22.6 84 0.0029 32.1 5.2 36 663-699 42-77 (261)
57 3udc_A Small-conductance mecha 22.2 5.4E+02 0.018 26.3 11.4 17 271-287 33-49 (285)
58 1vhx_A Putative holliday junct 21.1 1.9E+02 0.0064 26.9 6.8 61 582-644 40-100 (150)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.88 E-value=4.7e-23 Score=227.26 Aligned_cols=300 Identities=14% Similarity=0.107 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHH----Hhhhh--hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHH
Q 043953 117 LLETFSSLGLTFYMFLVGLEMDVSAV----KRMEK--KSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAI 190 (868)
Q Consensus 117 ~l~~la~lgl~~llF~~Gle~d~~~l----~~~~k--~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~ 190 (868)
...-+.+-.+.+|+|.+|+|+|.+.+ ++.+| .....++.|+++|++++. .+.... ..+.....
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~~~-------~~~~~gw~ 127 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNYAD-------PITREGWA 127 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCCSS-------TTHHHHTS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhcCC-------hhhhhhhH
Confidence 45667788899999999999998877 55444 478889999999988842 222211 33456666
Q ss_pred HHhhccHHHHHHHHHhcCc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHHHHHH
Q 043953 191 SLTITSFPDLARILSDVKL-LHTDIGKTALSSAIVNDLSSWFLLVLVIVAFNHYSKHRHGPALTELGAFLMAMLPIICFI 269 (868)
Q Consensus 191 ~ls~Ts~~vv~~iL~el~l-l~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 269 (868)
+.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++.. . +.+. . .+...+++.
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~-----~~~~-------~-~l~~~~~~~ 191 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---N-----DLSM-------A-SLGVAAVAI 191 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---C-----CCCH-------H-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---C-----CccH-------H-HHHHHHHHH
Confidence 7788999999999998754 56667799999999999999999998852 2 2221 1 111111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-C----chhhHHHHHH
Q 043953 270 LIFWFVLRPCIAWMIKETKKKAGKFSDTHISVILLGVVVCGFIADGCGMHSMAGGFIFGLIIPN-G----ELAINIMERT 344 (868)
Q Consensus 270 ~~~~~v~r~~~~~l~~~~~~~~~~~~e~~~~~il~~~~~~~~lae~~g~~~~lGafvaGl~l~~-~----~~~~~l~~~l 344 (868)
++. ++.+|. . .+....+..+ . +.+.+.++..|+|+.+|+|++|+++|. + +..+++++++
T Consensus 192 ~~~---------~~l~r~-~----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l 255 (388)
T 1zcd_A 192 AVL---------AVLNLC-G----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVL 255 (388)
T ss_dssp HHH---------HHHHHT-T----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHH
T ss_pred HHH---------HHHHHh-c----chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHH
Confidence 111 222332 1 2223333333 2 244567799999999999999999998 3 4578999999
Q ss_pred HHHHHHhHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHH
Q 043953 345 EEFISGVWLPSF-IVVSGLRTNFLELFSKTKLFYLLLTTIVATSAKILSTVLVALCY----------GMPVRDGVALGGL 413 (868)
Q Consensus 345 ~~~~~~l~~plf-Fv~~Gl~~dl~~l~~~~~~~~~~~ii~~~~~~K~l~~~l~~~~~----------~~~~~e~~~lg~~ 413 (868)
++++..+++|+| |+..|+++|....... .-.....+++..+++|+++++..++.. |++|+|...+|++
T Consensus 256 ~p~v~~~ilPlFaFanaGv~l~~~~~~~l-~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L 334 (388)
T 1zcd_A 256 HPWVAYLILPLFAFANAGVSLQGVTLDGL-TSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGIL 334 (388)
T ss_dssp HHHHHHTHHHHHHHHHCCCCCSSSCCCTH-HHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCeeecccchhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHH
Confidence 999989999999 9999999997533221 111223555666999999977777776 8999999999999
Q ss_pred HhhhhhHHHHHHhhcccccc--CchHHHHHHHHHHHHHHHhHHHHHHHh
Q 043953 414 MNTKGVMALIVLNEGRSLKA--IDNILMAAMVFMLLLMTGLVGPIFFLA 460 (868)
Q Consensus 414 m~~rG~v~lil~~~~~~~~i--i~~~~~~~lv~~~lv~t~i~~plv~~l 460 (868)
++.++++++++++.+++.+. +.++.+..+++++++++.+.+.++++.
T Consensus 335 ~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~ 383 (388)
T 1zcd_A 335 CGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVR 383 (388)
T ss_dssp TTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTT
T ss_pred hccchHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998876 356778888888888655555555443
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.71 E-value=3.2e-16 Score=169.23 Aligned_cols=267 Identities=15% Similarity=0.134 Sum_probs=173.9
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRH 563 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 563 (868)
-+||+|+++++.....++.+..++...+ ..++++|+++ + +. . ++.++.+.+
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~-~----------~~------------~----~~~l~~~~~ 58 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVTQ--SHLHLLVCEK-R----------RD------------H----SAALNDLAQ 58 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHHC--CEEEEEEECS-S----------SC------------C----HHHHHHHHH
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhcC--CeEEEEEeeC-c----------HH------------H----HHHHHHHHH
Confidence 4799999999999999999888886554 4679999987 1 00 0 112222222
Q ss_pred HHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecC
Q 043953 564 YQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDR 643 (868)
Q Consensus 564 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 643 (868)
.... .++.++...... .+..+.|++.|++.++|+||||.|++...++.+.++. .+++++++||||.|+-.
T Consensus 59 ~~~~-~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~------~~~vl~~~~~PVlvv~~- 128 (290)
T 3mt0_A 59 ELRE-EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPD------DWKLLRFAPCPVLMTKT- 128 (290)
T ss_dssp HHHH-TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHH------HHHHHHHCSSCEEEECC-
T ss_pred HHhh-CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHH------HHHHHhcCCCCEEEecC-
Confidence 2222 467777665543 5789999999999999999999998866555444443 48999999999987631
Q ss_pred CCCCccccccccccccCccceEEEeeccCcc-------hHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCC
Q 043953 644 GIGSAVITSAQSSLHGRQGLKLCMLFIGGPD-------DREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNT 716 (868)
Q Consensus 644 g~~~~~~~~~~~~~~~~~~~~I~v~f~GG~d-------dreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~ 716 (868)
+.. . . .++|++++.|+++ ++.|+++|.++|+..+.+++++|+.+....... .
T Consensus 129 ~~~------~--~-----~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~--------~ 187 (290)
T 3mt0_A 129 ARP------W--T-----GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSA--------D 187 (290)
T ss_dssp CSC------S--T-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC----------------
T ss_pred CCC------C--C-----CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccccc--------C
Confidence 211 0 1 6799999999998 799999999999999999999999865321100 0
Q ss_pred CcccccccccchhhhhhHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCC
Q 043953 717 EDEDLVDTARDVKEKELDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSG 796 (868)
Q Consensus 717 ~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~ 796 (868)
++ ... .+..++..++.++++.+++... .+.+. ....+..+.+....+ +.++||+|+|++++ +++.+
T Consensus 188 ~~--~~~---~~~~~~~~~~~l~~~~~~~g~~-~~~~~-v~~g~~~~~I~~~a~-~~~~dLiVmG~~g~------~~~~~ 253 (290)
T 3mt0_A 188 PT--FQL---SETIEARYREACRTFQAEYGFS-DEQLH-IEEGPADVLIPRTAQ-KLDAVVTVIGTVAR------TGLSG 253 (290)
T ss_dssp -C--HHH---HHHHHHHHHHHHHHHHHHHTCC-TTTEE-EEESCHHHHHHHHHH-HHTCSEEEEECCSS------CCGGG
T ss_pred ch--hHH---HHHHHHHHHHHHHHHHHHcCCC-cceEE-EeccCHHHHHHHHHH-hcCCCEEEECCCCC------cCCcc
Confidence 00 000 0122233445566666654321 11111 111233322221112 34699999999875 33433
Q ss_pred CCCCCccccchhhhccCCCCCcccEEEEecccccc
Q 043953 797 WVDNPELGPVGETLVSSNSTAHASVLVVQQSSSAL 831 (868)
Q Consensus 797 w~e~~eLG~igd~las~d~~~~~SVLVvqq~~~~~ 831 (868)
|- +|.+.+.++. .++++||||..+...+
T Consensus 254 ~~----~Gsv~~~vl~---~~~~pVLvv~~~~~~~ 281 (290)
T 3mt0_A 254 AL----IGNTAEVVLD---TLESDVLVLKPDDIIA 281 (290)
T ss_dssp CC----SCHHHHHHHT---TCSSEEEEECCHHHHH
T ss_pred ee----cchHHHHHHh---cCCCCEEEECCCCCCC
Confidence 33 8999999998 6899999997654433
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.67 E-value=8.7e-16 Score=167.87 Aligned_cols=289 Identities=12% Similarity=0.021 Sum_probs=176.6
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRH 563 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 563 (868)
-+||+|++++++....++.+..++...+ ..++++|+++......+-....+. . ....+ +..+..++.++.+..
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~-~--~~~~~--~~~~~~~~~l~~~~~ 80 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDMTTLLSPDE-R--NAMRK--GVINQKTAWIKQQAR 80 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGCTTTSCHHH-H--HHHHH--HHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHcC--CeEEEEEEecccchhhccccChhh-H--HHHHH--HHHHHHHHHHHHHHH
Confidence 4799999999999999998888886544 467999997632111000000000 0 00000 011122333443333
Q ss_pred HHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecC
Q 043953 564 YQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDR 643 (868)
Q Consensus 564 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 643 (868)
.... .+++++...... .+..++|++.|++.++|+||||.|++...++.+.++. ..+|++++||||.|.-++
T Consensus 81 ~~~~-~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~------~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 81 YYLE-AGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPL------DWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHH-TTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHH------HHHHHHHCSSCEEEEESS
T ss_pred HHhh-cCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccccccc------HHHHHhcCCCCEEEecCc
Confidence 3223 567777766533 5899999999999999999999998766555444443 389999999999877433
Q ss_pred CCCCccccccccccccCccceEEEeeccCcc-------hHHHHHHHHHhhcCC--CeEEEEEEeeecCCCCCCcccccCC
Q 043953 644 GIGSAVITSAQSSLHGRQGLKLCMLFIGGPD-------DREALFYAWRMAGKP--GVNLTVVRYVYNKDGESGILVEDLN 714 (868)
Q Consensus 644 g~~~~~~~~~~~~~~~~~~~~I~v~f~GG~d-------dreAL~~A~rma~~~--~v~ltvl~~~~~~~~~~~~~~~~~~ 714 (868)
... . ..+|++++.|+++ ++.|+++|.++++.. +.+|+++|+.+....... .
T Consensus 152 ~~~---------~-----~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~------~ 211 (319)
T 3olq_A 152 EWP---------E-----YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIA------I 211 (319)
T ss_dssp CCC---------T-----TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCC------T
T ss_pred ccc---------c-----CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhh------c
Confidence 211 1 5699999999995 499999999999876 999999999865422100 0
Q ss_pred CCCcccccccccchhhhhhHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCcccc
Q 043953 715 NTEDEDLVDTARDVKEKELDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTM 792 (868)
Q Consensus 715 ~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~ 792 (868)
...+. ......+..++..++.++++..++... .+.+. ....+. .+.|.+. +.++||+|+|++++ +
T Consensus 212 ~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-v~~g~~---~~~I~~~a~~~~~dLiV~G~~g~------~ 278 (319)
T 3olq_A 212 ELPDF--DPNLYNNALRGQHLIAMKELRQKFSIP-EEKTH-VKEGLP---EQVIPQVCEELNAGIVVLGILGR------T 278 (319)
T ss_dssp TCTTC--CHHHHHHHHHHHHHHHHHHHHHHTTCC-GGGEE-EEESCH---HHHHHHHHHHTTEEEEEEECCSC------C
T ss_pred cCCcc--cHHHHHHHHHHHHHHHHHHHHHHhCCC-cccEE-EecCCc---HHHHHHHHHHhCCCEEEEeccCc------c
Confidence 00000 000000112233455666666664332 22221 112232 2333332 34799999999864 2
Q ss_pred CCCCCCCCCccccchhhhccCCCCCcccEEEEeccc
Q 043953 793 GLSGWVDNPELGPVGETLVSSNSTAHASVLVVQQSS 828 (868)
Q Consensus 793 gl~~w~e~~eLG~igd~las~d~~~~~SVLVvqq~~ 828 (868)
|+.+| -+|.+.+.+.. .++++||||..+.
T Consensus 279 ~~~~~----~~Gsv~~~vl~---~~~~pVLvv~~~~ 307 (319)
T 3olq_A 279 GLSAA----FLGNTAEQLID---HIKCDLLAIKPDG 307 (319)
T ss_dssp STHHH----HHHHHHHHHHT---TCCSEEEEECCTT
T ss_pred CCccc----cccHHHHHHHh---hCCCCEEEECCCC
Confidence 33333 38999999998 6889999997654
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.66 E-value=2e-15 Score=164.62 Aligned_cols=279 Identities=16% Similarity=0.153 Sum_probs=171.9
Q ss_pred CCeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccc-hh-hhhhhccccCCCccchhhhccchHHHHHH
Q 043953 483 ELRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRAS-AM-LIVHDAFRTKTSDQNSIRELADSDLIINA 560 (868)
Q Consensus 483 elriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s-~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 560 (868)
--+||+|+++.+.....++.+..++...+. .++++|+++. .... +. ....+ ..+ +..+..++.++.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a--~l~ll~v~~~-~~~~~~~~~~~~~-------~~~--~~~~~~~~~l~~ 86 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELRKI--PLTLVHAVSP-EVATWLEVPLPPG-------VLR--WQQDHGRHLIDD 86 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHHTC--CEEEEEECCC-CCCCTTCCCCCHH-------HHH--HHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhcCC--cEEEEEEecC-cccccccCCCCch-------hhH--HHHHHHHHHHHH
Confidence 358999999998888888888887754443 5699999872 2111 00 00000 000 011222344443
Q ss_pred HHH-HHhh---CCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcc
Q 043953 561 FRH-YQDR---NDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCS 636 (868)
Q Consensus 561 f~~-~~~~---~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCs 636 (868)
+.+ +.+. ..++.++..... .+..++|++.|+ ++|+||||.|++....+.+.++ +.++|++++|||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs------~~~~vl~~~~~P 155 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGS------VSSGLLRHAHCP 155 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCH------HHHHHHHHCSSC
T ss_pred HHHHHHHhcccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccccccccCc------HHHHHHHhCCCC
Confidence 333 2221 125667665443 589999999996 8999999999876655544333 448999999999
Q ss_pred eEEEecCCCCCccccccccccccCccceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCC
Q 043953 637 IGILVDRGIGSAVITSAQSSLHGRQGLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNT 716 (868)
Q Consensus 637 VgIlvdrg~~~~~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~ 716 (868)
|.|+-.+.... .... .++|++++.|++.++.|+++|.++|+..+.+|+++|+.++...... .
T Consensus 156 Vlvv~~~~~~~-----~~~~-----~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~------~-- 217 (309)
T 3cis_A 156 VVIIHDEDSVM-----PHPQ-----QAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEW------P-- 217 (309)
T ss_dssp EEEECTTCCCS-----CSSC-----CCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTC------S--
T ss_pred EEEEcCCcccC-----CCCC-----CCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCC------C--
Confidence 98874332110 0111 5699999999999999999999999999999999999864321100 0
Q ss_pred CcccccccccchhhhhhHHHHHHHHHhhcC---CCCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccC
Q 043953 717 EDEDLVDTARDVKEKELDDEFINEFRFKTM---YDSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMG 793 (868)
Q Consensus 717 ~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~---~~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~g 793 (868)
..+ .+...+..++.++++..+.. .+-++.+. +..|. ..+.|.+..+++||+|+|++++ ++
T Consensus 218 ~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~g~-~~~~I~~~a~~adliV~G~~~~------~~ 280 (309)
T 3cis_A 218 GID-------WPATQSMAEQVLAERLAGWQERYPNVAITRV---VVRDQ-PARQLVQRSEEAQLVVVGSRGR------GG 280 (309)
T ss_dssp SCC-------HHHHHHHHHHHHHHHHTTHHHHCTTSCEEEE---EESSC-HHHHHHHHHTTCSEEEEESSCS------SC
T ss_pred ccc-------HHHHHHHHHHHHHHHHHHHHhhCCCCcEEEE---EEcCC-HHHHHHHhhCCCCEEEECCCCC------CC
Confidence 000 01111222333333332221 11233332 22332 3344444444899999999875 23
Q ss_pred CCCCCCCCccccchhhhccCCCCCcccEEEEec
Q 043953 794 LSGWVDNPELGPVGETLVSSNSTAHASVLVVQQ 826 (868)
Q Consensus 794 l~~w~e~~eLG~igd~las~d~~~~~SVLVvqq 826 (868)
+.+| -+|.+.+.+.. .++++||||..
T Consensus 281 ~~~~----l~Gsv~~~vl~---~~~~pVlvv~~ 306 (309)
T 3cis_A 281 YAGM----LVGSVGETVAQ---LARTPVIVARE 306 (309)
T ss_dssp CTTC----SSCHHHHHHHH---HCSSCEEEECC
T ss_pred cccc----ccCcHHHHHHh---cCCCCEEEeCC
Confidence 4333 38999999998 58899999964
No 5
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.65 E-value=3.7e-15 Score=158.77 Aligned_cols=261 Identities=13% Similarity=0.100 Sum_probs=166.6
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCc--cc---hhhhccchHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSD--QN---SIRELADSDLIIN 559 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~--~~---~~~~~~~~~~i~~ 559 (868)
|||+|++++++....++.+..++...+. .++++|+++......+-. .......... .+ ..+..+..++.++
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a--~l~ll~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSA--PLTVLFVVDTRLARIPEL--LDFGALTVPVPVLRTELERALALRGEAVLE 77 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTC--CEEEEEEEEHHHHTHHHH--C-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCcccccc--cCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999988888765443 569999987533110000 0000000000 00 0001223345555
Q ss_pred HHHHHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCC-CCCCCccccchhhHHHHHHHhccCCcceE
Q 043953 560 AFRHYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQP-TADGELQGENHQIREVNNNLLAKAPCSIG 638 (868)
Q Consensus 560 af~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~-~~~g~~~~~~~~~r~vn~~Vl~~ApCsVg 638 (868)
.+.+..+. .++.++...... +..+.|++. +.++|+|+||.|++. ...+.+.++ +.++|++++||||.
T Consensus 78 ~~~~~~~~-~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs------~~~~v~~~a~~PVl 145 (268)
T 3ab8_A 78 RVRQSALA-AGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGS------TADRVLRASPVPVL 145 (268)
T ss_dssp HHHHHHHH-TTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCH------HHHHHHHHCSSCEE
T ss_pred HHHHHHHh-CCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCccccccccch------hHHHHHHhCCCCEE
Confidence 55554433 467777665544 789999998 889999999999876 555544333 44899999999997
Q ss_pred EEecCCCCCccccccccccccCccceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCc
Q 043953 639 ILVDRGIGSAVITSAQSSLHGRQGLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTED 718 (868)
Q Consensus 639 Ilvdrg~~~~~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~ 718 (868)
|.-.+. . . .++|++++.|+++++.|+++|.+++...+++++++|+.++.
T Consensus 146 vv~~~~-~---------~-----~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~---------------- 194 (268)
T 3ab8_A 146 LAPGEP-V---------E-----LEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP---------------- 194 (268)
T ss_dssp EECSSC-C---------C-----CCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH----------------
T ss_pred EECCCC-C---------C-----CCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH----------------
Confidence 763221 1 1 56999999999999999999999999889999999996432
Q ss_pred ccccccccchhhhhhHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCC
Q 043953 719 EDLVDTARDVKEKELDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWV 798 (868)
Q Consensus 719 ~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~ 798 (868)
+..++.-+++.+.+... +-++.+ . +..| +..+.|.+..+++||+++|+ ++.+|
T Consensus 195 ---------~~~~~~l~~~~~~l~~~---~~~~~~--~-~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~- 247 (268)
T 3ab8_A 195 ---------ARAEAWALEAEAYLRDH---GVEASA--L-VLGG-DAADHLLRLQGPGDLLALGA----------PVRRL- 247 (268)
T ss_dssp ---------HHHHHHHHHHHHHHHHT---TCCEEE--E-EECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC-
T ss_pred ---------HHHHHHHHHHHHHHHHc---CCceEE--E-EeCC-ChHHHHHHHHHhCCEEEECC----------ccccc-
Confidence 11111122333333321 112333 2 2234 34445555555559999999 22222
Q ss_pred CCCccccchhhhccCCCCCcccEEEEe
Q 043953 799 DNPELGPVGETLVSSNSTAHASVLVVQ 825 (868)
Q Consensus 799 e~~eLG~igd~las~d~~~~~SVLVvq 825 (868)
-+|.+.+.+.. .++++||||.
T Consensus 248 ---~~Gs~~~~vl~---~~~~pvlvv~ 268 (268)
T 3ab8_A 248 ---VFGSTAERVIR---NAQGPVLTAR 268 (268)
T ss_dssp ---SSCCHHHHHHH---HCSSCEEEEC
T ss_pred ---EeccHHHHHHh---cCCCCEEEeC
Confidence 38999999998 6889999983
No 6
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.64 E-value=5.7e-16 Score=167.55 Aligned_cols=267 Identities=10% Similarity=0.025 Sum_probs=171.8
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRH 563 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 563 (868)
-|||+|++++++....++.+..++...+ ..++++|+++........ .. .......+ +..+..++.++.+.+
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~--~~---~~~~~~~~--~~~~~~~~~l~~~~~ 93 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVGV--EEIGVLFVINLTKLSTVS--GG---IDIDHYID--EMSEKAEEVLPEVAQ 93 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTTC--CEEEEECCEECTTC-------C---CCTTHHHH--HHHHHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCccccccc--cc---ccHHHHHH--HHHHHHHHHHHHHHH
Confidence 4899999999999998888888876543 567999998865432100 00 00000001 122334555555555
Q ss_pred HHhhCCCeeEEE-EEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEec
Q 043953 564 YQDRNDDITVQP-LTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVD 642 (868)
Q Consensus 564 ~~~~~~~v~v~~-~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvd 642 (868)
..+. .++.++. ... ...+..+.| .|++.++|+||||.|++....+. .++++.++|++++||||.|+-+
T Consensus 94 ~~~~-~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~------~~Gs~~~~vl~~~~~PVlvv~~ 162 (294)
T 3loq_A 94 KIEA-AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKKI------LLGSVSEGVLHDSKVPVYIFKH 162 (294)
T ss_dssp HHHH-TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHHH------HHCCHHHHHHHHCSSCEEEECC
T ss_pred HHHH-cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccccce------eeccHHHHHHhcCCCCEEEecC
Confidence 4444 4677776 333 124788898 99999999999999876533222 2344558999999999987633
Q ss_pred CCCCCccccccccccccCccceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCccccc
Q 043953 643 RGIGSAVITSAQSSLHGRQGLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLV 722 (868)
Q Consensus 643 rg~~~~~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (868)
.... ... .++|++++.|+++++.|+++|.++++..+.+++++++.+... .
T Consensus 163 ~~~~-------~~~-----~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~---~--------------- 212 (294)
T 3loq_A 163 DMVV-------NSL-----FDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD---K--------------- 212 (294)
T ss_dssp CTTT-------TCT-----TSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC---C---------------
T ss_pred cccc-------Ccc-----CCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch---H---------------
Confidence 2210 011 579999999999999999999999999999999999975431 0
Q ss_pred ccccchhhhhhHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccCCCCCCCC
Q 043953 723 DTARDVKEKELDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMGLSGWVDN 800 (868)
Q Consensus 723 ~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~gl~~w~e~ 800 (868)
++.-+++.+.+... . -.+.+ .+..+ +..+.|.+. +.++||+|+|++++. ++.+|
T Consensus 213 --------~~~l~~~~~~l~~~-~--~~~~~---~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~--- 268 (294)
T 3loq_A 213 --------TADLRVMEEVIGAE-G--IEVHV---HIESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM--- 268 (294)
T ss_dssp --------HHHHHHHHHHHHHT-T--CCEEE---EEECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH---
T ss_pred --------HHHHHHHHHHHHHc-C--CcEEE---EEecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce---
Confidence 11122233333332 1 12332 23333 333334333 347999999999752 23222
Q ss_pred CccccchhhhccCCCCCcccEEEEeccc
Q 043953 801 PELGPVGETLVSSNSTAHASVLVVQQSS 828 (868)
Q Consensus 801 ~eLG~igd~las~d~~~~~SVLVvqq~~ 828 (868)
-+|.+.+.++. .++++||||.+..
T Consensus 269 -~~Gs~~~~vl~---~~~~pvLvv~~~~ 292 (294)
T 3loq_A 269 -ILGSTSESVIR---RSPVPVFVCKRGD 292 (294)
T ss_dssp -HHHCHHHHHHH---HCSSCEEEECSCT
T ss_pred -eeCcHHHHHHh---cCCCCEEEECCCC
Confidence 38999999998 6889999997754
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.79 E-value=2e-08 Score=95.90 Aligned_cols=136 Identities=11% Similarity=0.150 Sum_probs=93.6
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhh--hhhhccccCCCccchhhhccchHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAML--IVHDAFRTKTSDQNSIRELADSDLIINAF 561 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~af 561 (868)
-|||+|+++.++....++.+..++...+ ..++++|+++......... ...+. .+ +..+..++.++.+
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~l~~~ 74 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQ--ANLTALYVVDDSAYHTPALDPVLSEL-------LD--AEAAHAKDAMRQR 74 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEECCCCCCGGGHHHHHHH-------HH--HHHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccccccHHH-------HH--HHHHHHHHHHHHH
Confidence 4799999999988888888888775443 4679999998754432111 00000 00 0223334555555
Q ss_pred HHHHhhCCCe-eEEEEEEEecCCCchhHHHH-HHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEE
Q 043953 562 RHYQDRNDDI-TVQPLTAVSSFTSIHEDIFE-IAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGI 639 (868)
Q Consensus 562 ~~~~~~~~~v-~v~~~t~vs~~~~m~~dI~~-~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgI 639 (868)
.+..+. .++ .++...... +..+.|++ .|++.++|+|+||.|++....+.+.++ +.++|++++||||.|
T Consensus 75 ~~~~~~-~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs------~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 75 QQFVAT-TSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGS------TTSYVVDHAPCNVIV 144 (146)
T ss_dssp HHHHTT-SSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCH------HHHHHHHHCSSEEEE
T ss_pred HHHHHh-cCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcc------hHHHHhccCCCCEEE
Confidence 554443 456 666666555 78999999 999999999999999887665544333 448999999999977
Q ss_pred E
Q 043953 640 L 640 (868)
Q Consensus 640 l 640 (868)
+
T Consensus 145 V 145 (146)
T 3s3t_A 145 I 145 (146)
T ss_dssp E
T ss_pred e
Confidence 5
No 8
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.76 E-value=1.8e-08 Score=96.28 Aligned_cols=138 Identities=10% Similarity=0.058 Sum_probs=90.9
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhh--hhhccccCCCccchhhhccchHHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLI--VHDAFRTKTSDQNSIRELADSDLIINAFR 562 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 562 (868)
|||+|+++.++....++.+..++...+ ..++++|+++.......... .... .....+ +..+..++.++.+.
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~l~~~~ 76 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQLTG--AELYILCVFKHHSLLEASLSMARPEQ---LDIPDD--ALKDYATEIAVQAK 76 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHHHC--CEEEEEEEECCHHHHHHTBSSCCCGG---GCCCTT--HHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCcccccccccccChhh---hhhHHH--HHHHHHHHHHHHHH
Confidence 799999999888888888888775443 46799999885431110000 0000 000011 12233455666555
Q ss_pred HHHhhCCCeeE---EEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEE
Q 043953 563 HYQDRNDDITV---QPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGI 639 (868)
Q Consensus 563 ~~~~~~~~v~v---~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgI 639 (868)
+..+. .++.+ +..... .+..+.|++.|++.++|+|+||.|++....+.+.++ +.++|++++||||.|
T Consensus 77 ~~~~~-~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs------~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 77 TRATE-LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGS------VAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHH-TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCH------HHHHHHHHCSSCEEE
T ss_pred HHHHh-cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccccceeecc------HHHHHHhhCCCCEEE
Confidence 55444 35554 554444 489999999999999999999999887665544333 448999999999976
No 9
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.74 E-value=4.1e-08 Score=93.30 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=88.5
Q ss_pred eEEEeecCCCC--hhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHH
Q 043953 485 RILTCIHSVGN--LSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFR 562 (868)
Q Consensus 485 riLv~v~~~~~--~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 562 (868)
|||+|+++.++ ....++.+..++...+ ..++++|+++.............. ... ...+..++..+.++
T Consensus 3 ~ILv~vD~s~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~l~ 72 (143)
T 3fdx_A 3 AILVPIDISDKEFTERIISHVESEARIDD--AEVHFLTVIPSLPYYASLGMAYTA---ELP-----GMDELREGSETQLK 72 (143)
T ss_dssp EEEEECCTTCSSCCTTHHHHHHHHHHHHT--CEEEEEEEECC------------------------CHHHHHHHHHHHHH
T ss_pred EEEEEecCChHhhHHHHHHHHHHHHHhcC--CeEEEEEEecCCcccccccccccc---hhh-----hHHHHHHHHHHHHH
Confidence 79999999998 8888888887775433 467999998865432111100000 000 01223355666677
Q ss_pred HHHhhC--CCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 563 HYQDRN--DDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 563 ~~~~~~--~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
++.++. ..+.++...... +..+.|++.|++.++|+|+||.|+ ....+.+ ++++.++|++++||||.|+
T Consensus 73 ~~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~------~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 73 EIAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTYL------LGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSCS------SCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHcCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeeee------eccHHHHHHHhCCCCEEEe
Confidence 776653 234566655554 899999999999999999999995 4444433 3344589999999999775
No 10
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.73 E-value=1.1e-07 Score=92.53 Aligned_cols=142 Identities=17% Similarity=0.209 Sum_probs=90.9
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeecccc----ccchhh-----h-hhhccccCCCccchhhhccc
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTR----RASAML-----I-VHDAFRTKTSDQNSIRELAD 553 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~----r~s~~~-----~-~~~~~~~~~~~~~~~~~~~~ 553 (868)
-|||+|+++.++....++.+..++...+ ..++++|+++... ...... . +.+. .......+ +..+.
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~ 80 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLKA--EEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVE-EFENELKN--KLTEE 80 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSSC--CEEEEEEEEEGGGTC-----------------CH-HHHHHHHH--HHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC--CeEEEEEEecCccccccccccccccccccccchh-hhHHHHHH--HHHHH
Confidence 4799999999988889999988886543 5779999987531 000000 0 0000 00000000 01222
Q ss_pred hHHHHHHHHHHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccC
Q 043953 554 SDLIINAFRHYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKA 633 (868)
Q Consensus 554 ~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~A 633 (868)
.++.++.+.+..+. .++.++...... +..+.|++.|++.++|+|+||.|++....+.+.+ ++.++|++++
T Consensus 81 ~~~~l~~~~~~~~~-~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~G------Sv~~~vl~~~ 150 (162)
T 1mjh_A 81 AKNKMENIKKELED-VGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLG------SVTENVIKKS 150 (162)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSC------HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-cCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccceEec------chHHHHHHhC
Confidence 34444444433333 467777665544 8999999999999999999999988765554433 4459999999
Q ss_pred CcceEEE
Q 043953 634 PCSIGIL 640 (868)
Q Consensus 634 pCsVgIl 640 (868)
||||.|+
T Consensus 151 ~~pVlvv 157 (162)
T 1mjh_A 151 NKPVLVV 157 (162)
T ss_dssp CSCEEEE
T ss_pred CCCEEEE
Confidence 9999887
No 11
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.71 E-value=6.1e-08 Score=91.59 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=93.0
Q ss_pred eEEEeecCCCChhhHHHHHHhhc-cCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhc-cchHHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSN-ATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIREL-ADSDLIINAFR 562 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~-~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~af~ 562 (868)
|||+|+++.++....++.+..++ ...+ ..++++|+++.............. ..+ +.. +..++.++.+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~l~~~~ 72 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDAD--CTLTLIHVKPEFMLYGEAVLAAYD------EIE--MKEEEKAKLLTQKFS 72 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCTT--EEEEEEEEECCCCCCHHHHHHHHH------HHH--HHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCCC--CEEEEEEEecCCCcccccccCcHH------HHH--HHHHHHHHHHHHHHH
Confidence 79999999999999999998888 5543 577999998875532211000000 000 012 33455555555
Q ss_pred HHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 563 HYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 563 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
+..+. .++.++...... +..+.|++.|+ ++|+|+||.|++....+.+ ++.. ++|++++||||.|+
T Consensus 73 ~~~~~-~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~------~~vl~~~~~pVlvv 137 (138)
T 3idf_A 73 TFFTE-KGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQ------DDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHT-TTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTT------CHHHHHCSSCEEEE
T ss_pred HHHHH-CCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHH------HHHHhcCCCCEEEe
Confidence 55444 466776665554 79999999999 9999999999987777666 6655 89999999999775
No 12
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.68 E-value=4.8e-08 Score=94.56 Aligned_cols=136 Identities=12% Similarity=0.124 Sum_probs=89.8
Q ss_pred CeEEEeec--CCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHH
Q 043953 484 LRILTCIH--SVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAF 561 (868)
Q Consensus 484 lriLv~v~--~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 561 (868)
-|||+|++ +++.....++.+..++...+ ..++++|+++............+ ..+ +..+..++.++.+
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~l~~~ 84 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHDYD--VPLGICSVLESEDINIFDSLTPS-------KIQ--AKRKHVEDVVAEY 84 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHHHT--CCEEEEEEECCCCTTCCCSSHHH-------HHH--HHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEeCCCccccccCCHH-------HHH--HHHHHHHHHHHHH
Confidence 47999999 99888888888888776544 35699999886542110000000 000 0222334455544
Q ss_pred HHHHhhCCCe-eEEEEEEEecCCCchhHHHHH-HHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEE
Q 043953 562 RHYQDRNDDI-TVQPLTAVSSFTSIHEDIFEI-AEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGI 639 (868)
Q Consensus 562 ~~~~~~~~~v-~v~~~t~vs~~~~m~~dI~~~-A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgI 639 (868)
.+..+. .++ .++.....+ .+..+.|++. |++.++|+|+||.|++...+ .+.++. .++|++++||||.|
T Consensus 85 ~~~~~~-~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~------~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 85 VQLAEQ-RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAI------GPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHH-HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCH------HHHHHHHCSSEEEE
T ss_pred HHHHHH-cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecch------HHHHHHhCCCCEEE
Confidence 443333 345 466666652 4899999999 99999999999999887664 344443 38999999999977
Q ss_pred E
Q 043953 640 L 640 (868)
Q Consensus 640 l 640 (868)
+
T Consensus 155 V 155 (156)
T 3fg9_A 155 V 155 (156)
T ss_dssp E
T ss_pred e
Confidence 5
No 13
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.67 E-value=7.4e-08 Score=93.55 Aligned_cols=129 Identities=12% Similarity=0.157 Sum_probs=90.0
Q ss_pred CeEEEeecC-CCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHH
Q 043953 484 LRILTCIHS-VGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFR 562 (868)
Q Consensus 484 lriLv~v~~-~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 562 (868)
-+||+|+++ .+.....++.+..++...+. .++++|+++...... +. ..+..++.++.+.
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~~a--~l~llhV~~~~~~~~------~~------------~~~~~~~~l~~~~ 84 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLRGV--PVYVVHSLPGGGRTK------DE------------DIIEAKETLSWAV 84 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHHTC--CEEEEEEECCSTTSC------HH------------HHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhcCC--EEEEEEEEcCCCccc------HH------------HHHHHHHHHHHHH
Confidence 479999999 88888888888888765444 569999987543210 00 1122344555444
Q ss_pred HHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 563 HYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 563 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
+..+. .++.++..+.+ ...+..+.|++.|++.++|+||||.|++....+.+. +.+.++|++++||||.|+
T Consensus 85 ~~~~~-~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~l------GSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 85 SIIRK-EGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIF------GSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHH-TTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEEC------CHHHHHHHHHCSSCEEEE
T ss_pred HHHHh-cCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEe------ccHHHHHHHhCCCCEEEe
Confidence 44443 35555554444 225899999999999999999999998866555443 344589999999999775
No 14
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.65 E-value=1.2e-07 Score=93.13 Aligned_cols=146 Identities=13% Similarity=0.086 Sum_probs=89.2
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchh-hhh--h-hccccCCCccchhhhccchHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAM-LIV--H-DAFRTKTSDQNSIRELADSDLIIN 559 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~ 559 (868)
-|||+|+++.++....++.+..++...+ ..++++|+++........ -.. . ....+.....+ +..+..++.++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 81 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKMEV--GEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKE--KLKEEASRKLQ 81 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSCC--SEEEEEEEEETTGGGCCC------------CCTTSHH--HHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccccccccccccccHHHHHH--HHHHHHHHHHH
Confidence 3799999999888889999988886543 567999998743221000 000 0 00000001110 01222344444
Q ss_pred HHHHHHhhCCCeeEEE--EEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcce
Q 043953 560 AFRHYQDRNDDITVQP--LTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSI 637 (868)
Q Consensus 560 af~~~~~~~~~v~v~~--~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsV 637 (868)
.+.+..+. .++.++. .... .+..+.|++.|++.++|+||||.|++....+.+. +++.++|++++||||
T Consensus 82 ~~~~~~~~-~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~------Gsv~~~vl~~~~~PV 151 (170)
T 2dum_A 82 EKAEEVKR-AFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFL------GSTVMRVLRKTKKPV 151 (170)
T ss_dssp HHHHHHHH-HTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCC------CHHHHHHHHHCSSCE
T ss_pred HHHHHHHH-cCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCcccccee------chHHHHHHHhCCCCE
Confidence 44333222 2455554 4443 4899999999999999999999998865554443 344589999999999
Q ss_pred EEEecC
Q 043953 638 GILVDR 643 (868)
Q Consensus 638 gIlvdr 643 (868)
.|+-.+
T Consensus 152 lvv~~~ 157 (170)
T 2dum_A 152 LIIKEV 157 (170)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 887433
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.64 E-value=4.9e-08 Score=92.26 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=82.3
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRHY 564 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 564 (868)
|||+|+++.+.....++.+..++...+ ..++++|+++.... .. ..... ....+. ..+..++. ++.+
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~--~~-~~~~~----~~~~~~--~~~~~~~~---l~~~ 69 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEAHG--ARLIVVHAYEPVPD--YL-GEPFF----EEALRR--RLERAEGV---LEEA 69 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEECC---------------------CH--HHHHHHHH---HHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCCCc--cc-cccch----HHHHHH--HHHHHHHH---HHHH
Confidence 799999999888888888887775443 46799999873211 10 00000 000000 11122333 3333
Q ss_pred HhhCCCe-eEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 565 QDRNDDI-TVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 565 ~~~~~~v-~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
.+. .++ .++..... .+..+.|++.|++.++|+|+||.|++....+.+.+ ++.++|++++||||.|+
T Consensus 70 ~~~-~g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G------s~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 70 RAL-TGVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALGSLFLG------SQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHH-HCCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSC------HHHHHHHHHCSSCEEEE
T ss_pred HHH-cCCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhc------cHHHHHHhcCCCCEEEe
Confidence 332 133 33333333 48999999999999999999999988665544433 34599999999999875
No 16
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.64 E-value=2e-07 Score=88.82 Aligned_cols=138 Identities=13% Similarity=0.019 Sum_probs=88.0
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEF 741 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~ 741 (868)
.++|++++.|+++++.|+++|.++|+..+++|+++|+++........ ... ..+ ...+..++..++.++++
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~---~~~--~~~-----~~~~~~~~~~~~~l~~~ 74 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPA---LDP--VLS-----ELLDAEAAHAKDAMRQR 74 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGG---GHH--HHH-----HHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc---ccc--ccH-----HHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999764221110 000 000 00022234455666777
Q ss_pred HhhcCCCC--ceEEEEeecCChHHHHHHHH-hh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCC
Q 043953 742 RFKTMYDS--SITYNDKMVSNVEELVESIT-TM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTA 817 (868)
Q Consensus 742 ~~~~~~~~--~v~y~e~~v~~~~e~~~~i~-~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~ 817 (868)
.......+ ++.+. +..|....++++ .. +.++||+|+|+++. .++.+| -+|...+.++. .+
T Consensus 75 ~~~~~~~g~~~~~~~---~~~g~~~~~I~~~~a~~~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~---~~ 138 (146)
T 3s3t_A 75 QQFVATTSAPNLKTE---ISYGIPKHTIEDYAKQHPEIDLIVLGATGT------NSPHRV----AVGSTTSYVVD---HA 138 (146)
T ss_dssp HHHHTTSSCCCCEEE---EEEECHHHHHHHHHHHSTTCCEEEEESCCS------SCTTTC----SSCHHHHHHHH---HC
T ss_pred HHHHHhcCCcceEEE---EecCChHHHHHHHHHhhcCCCEEEECCCCC------CCcceE----EEcchHHHHhc---cC
Confidence 66544321 33322 222322223333 22 36799999999864 233333 38999999999 68
Q ss_pred cccEEEEe
Q 043953 818 HASVLVVQ 825 (868)
Q Consensus 818 ~~SVLVvq 825 (868)
+++||||.
T Consensus 139 ~~pVlvV~ 146 (146)
T 3s3t_A 139 PCNVIVIR 146 (146)
T ss_dssp SSEEEEEC
T ss_pred CCCEEEeC
Confidence 89999984
No 17
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.60 E-value=8.7e-08 Score=91.90 Aligned_cols=139 Identities=16% Similarity=0.115 Sum_probs=80.3
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRH 563 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 563 (868)
-|||+|+++.++....++.+..++...+ ..++++|+++......+... .......... .....++..+.++.
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~l~~ 78 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIG--ARLSLIHVLDNIPMPDTPYG-TAIPLDTETT-----YDAMLDVEKQKLSQ 78 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEC--------CT-TCCCSSSCCC-----HHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEEcCccccccccc-cccCcCHHHH-----HHHHHHHHHHHHHH
Confidence 4799999999999999998888876543 46799999875432100000 0000000000 11112333344444
Q ss_pred HHhhCCCee-EEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEe
Q 043953 564 YQDRNDDIT-VQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILV 641 (868)
Q Consensus 564 ~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlv 641 (868)
+.++. ++. ++..... .+..+.|++.|++.++|+|+||.|++.... .+.++.. ++|++++||||.|+-
T Consensus 79 ~~~~~-~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~------~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 79 IGNTL-GIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTA------NSVLHYAKCDVLAVR 146 (150)
T ss_dssp HHHHH-TCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC---------CCCHH------HHHHHHCSSEEEEEE
T ss_pred HHHHc-CCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchH------HHHHHhCCCCEEEEe
Confidence 44432 222 2222222 488999999999999999999999886655 4444443 899999999998873
No 18
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.59 E-value=9.6e-08 Score=93.56 Aligned_cols=137 Identities=12% Similarity=0.105 Sum_probs=87.3
Q ss_pred CCeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEE--EeeccccccchhhhhhhccccCCCccchhhhccchHHHHHH
Q 043953 483 ELRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAV--HLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINA 560 (868)
Q Consensus 483 elriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~L--hLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 560 (868)
--|||+|+++.+.....++.+..++. .+ ..++++ |+++......+.-.. . ....+ +..+..++.++.
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~~~~~~-~-----~~~~~--~~~~~~~~~l~~ 85 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARAADILK-D-----ESYKV--TGTAPIYEILHD 85 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TT--SEEEEEEECCC----------------------------CCTHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CC--CEEEEEEeeeccCcccccccccc-c-----HHHHH--HHHHHHHHHHHH
Confidence 35899999999888889999888886 44 467999 887644320110000 0 00000 022334555655
Q ss_pred HHHHHhhCCCee-EEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEE
Q 043953 561 FRHYQDRNDDIT-VQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGI 639 (868)
Q Consensus 561 f~~~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgI 639 (868)
+.+..+. .++. ++..... .+..+.|++.|++.++|+|+||.|++....+.+ ++++.++|+++|||||.|
T Consensus 86 ~~~~~~~-~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSva~~vl~~a~~PVlv 155 (163)
T 1tq8_A 86 AKERAHN-AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAGRL------LGSVPANVSRRAKVDVLI 155 (163)
T ss_dssp HHHHHHT-TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHH------TBBHHHHHHHHTTCEEEE
T ss_pred HHHHHHH-cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCccccee------eccHHHHHHHhCCCCEEE
Confidence 5554443 3566 6665543 488999999999999999999999876543333 333448999999999988
Q ss_pred E
Q 043953 640 L 640 (868)
Q Consensus 640 l 640 (868)
+
T Consensus 156 V 156 (163)
T 1tq8_A 156 V 156 (163)
T ss_dssp E
T ss_pred E
Confidence 7
No 19
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.56 E-value=4.9e-07 Score=89.21 Aligned_cols=144 Identities=7% Similarity=0.055 Sum_probs=83.8
Q ss_pred CeEEEeecCCC---------ChhhHHHHHHhhccCC-CCCceEEEEEeeccccccch----h-hhhhhccccCCCccchh
Q 043953 484 LRILTCIHSVG---------NLSGIINLLELSNATK-KSPLCVFAVHLVELTRRASA----M-LIVHDAFRTKTSDQNSI 548 (868)
Q Consensus 484 lriLv~v~~~~---------~~~~li~Ll~~~~~~~-~sp~~v~~LhLvel~~r~s~----~-~~~~~~~~~~~~~~~~~ 548 (868)
-|||+|+++.+ .....++.+..+.... .....++++|+++....... . ....+. .. ..+
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~~---~~~-- 79 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDF-RD---MRQ-- 79 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHH-HH---HTT--
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHH-HH---HHH--
Confidence 47999999988 7777888887754322 12467899999864321100 0 000000 00 000
Q ss_pred hhccchHHHHHHHHHHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHH
Q 043953 549 RELADSDLIINAFRHYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNN 628 (868)
Q Consensus 549 ~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~ 628 (868)
+..+..++.++.+.+..+. .++.++..... .+..+.|++.|++.++|+||||.|++....+.+. +++.++
T Consensus 80 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~------Gsva~~ 149 (175)
T 2gm3_A 80 SNKAKGLHLLEFFVNKCHE-IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFV------GTVSAF 149 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHH-HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhc------CchHHH
Confidence 0111223444444433222 35667665444 4789999999999999999999998765554443 344589
Q ss_pred HhccCCcceEEEecC
Q 043953 629 LLAKAPCSIGILVDR 643 (868)
Q Consensus 629 Vl~~ApCsVgIlvdr 643 (868)
|++++||||.|+-.+
T Consensus 150 vl~~a~~pVlvv~~~ 164 (175)
T 2gm3_A 150 CVKHAECPVMTIKRN 164 (175)
T ss_dssp HHHHCSSCEEEEECC
T ss_pred HHhCCCCCEEEEcCC
Confidence 999999999887443
No 20
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.55 E-value=1.2e-07 Score=91.94 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=84.6
Q ss_pred cceEEEeecc-CcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHH
Q 043953 662 GLKLCMLFIG-GPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINE 740 (868)
Q Consensus 662 ~~~I~v~f~G-G~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~ 740 (868)
.++|++++.| ++.++.|+++|.++|+..+++|+++++.+..... ++..++..++.+++
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~---------------------~~~~~~~~~~~l~~ 82 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT---------------------KDEDIIEAKETLSW 82 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS---------------------CHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc---------------------cHHHHHHHHHHHHH
Confidence 5699999999 9999999999999999999999999998654210 12222334445555
Q ss_pred HHhhcCC-CCceEEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCc
Q 043953 741 FRFKTMY-DSSITYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAH 818 (868)
Q Consensus 741 ~~~~~~~-~~~v~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~ 818 (868)
+.+.... ...+... ..+..|....++++.. +.++||+|+|++++ +++.+| -+|.+.+.++. .++
T Consensus 83 ~~~~~~~~g~~~~~~-~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~------~~~~~~----~lGSv~~~vl~---~a~ 148 (155)
T 3dlo_A 83 AVSIIRKEGAEGEEH-LLVRGKEPPDDIVDFADEVDAIAIVIGIRKR------SPTGKL----IFGSVARDVIL---KAN 148 (155)
T ss_dssp HHHHHHHTTCCEEEE-EEESSSCHHHHHHHHHHHTTCSEEEEECCEE------CTTSCE----ECCHHHHHHHH---HCS
T ss_pred HHHHHHhcCCCceEE-EEecCCCHHHHHHHHHHHcCCCEEEECCCCC------CCCCCE----EeccHHHHHHH---hCC
Confidence 5443322 1223322 2233333222333322 34799999999864 223222 38999999999 688
Q ss_pred ccEEEEe
Q 043953 819 ASVLVVQ 825 (868)
Q Consensus 819 ~SVLVvq 825 (868)
++||||+
T Consensus 149 ~PVLvVr 155 (155)
T 3dlo_A 149 KPVICIK 155 (155)
T ss_dssp SCEEEEC
T ss_pred CCEEEeC
Confidence 9999984
No 21
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.54 E-value=3.3e-07 Score=86.98 Aligned_cols=137 Identities=14% Similarity=0.093 Sum_probs=80.4
Q ss_pred ceEEEeeccCcc--hHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHH
Q 043953 663 LKLCMLFIGGPD--DREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINE 740 (868)
Q Consensus 663 ~~I~v~f~GG~d--dreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~ 740 (868)
++|++++.|+++ ++.|+++|.++|+..+++|+++|+.+........ ......+. ...+...+...+.+++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~l~~ 73 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASL---GMAYTAEL-----PGMDELREGSETQLKE 73 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC------------------------CHHHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccc---cccccchh-----hhHHHHHHHHHHHHHH
Confidence 589999999999 9999999999999999999999998753211000 00000000 0001112223334445
Q ss_pred HHhhcCCC-CceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCC
Q 043953 741 FRFKTMYD-SSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTA 817 (868)
Q Consensus 741 ~~~~~~~~-~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~ 817 (868)
+..+.... .++.+. +..| +..+.|.+. +.++||+|+|+++ . ++.+| -+|.+.+.++. .+
T Consensus 74 ~~~~~~~~~~~v~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~------~~~~~----~~Gs~~~~v~~---~~ 135 (143)
T 3fdx_A 74 IAKKFSIPEDRMHFH---VAEG-SPKDKILALAKSLPADLVIIASHR-P------DITTY----LLGSNAAAVVR---HA 135 (143)
T ss_dssp HHTTSCCCGGGEEEE---EEES-CHHHHHHHHHHHTTCSEEEEESSC-T------TCCSC----SSCHHHHHHHH---HC
T ss_pred HHHHcCCCCCceEEE---EEec-ChHHHHHHHHHHhCCCEEEEeCCC-C------CCeee----eeccHHHHHHH---hC
Confidence 54443221 233332 2223 222333333 3479999999983 1 23222 38999999999 68
Q ss_pred cccEEEEe
Q 043953 818 HASVLVVQ 825 (868)
Q Consensus 818 ~~SVLVvq 825 (868)
+++||||.
T Consensus 136 ~~pVlvv~ 143 (143)
T 3fdx_A 136 ECSVLVVR 143 (143)
T ss_dssp SSEEEEEC
T ss_pred CCCEEEeC
Confidence 89999983
No 22
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.53 E-value=1.5e-07 Score=89.67 Aligned_cols=140 Identities=17% Similarity=0.123 Sum_probs=83.5
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCC-CCCCcccccCCCCCcccccccccchhhhhhHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKD-GESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINE 740 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~ 740 (868)
.++|++++.|+++++.|+++|.++|+..+++|+++|+.+... .... ......+. .. ...+..++..++.+++
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~----~~~~~~~~-~~--~~~~~~~~~~~~~l~~ 74 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEAS----LSMARPEQ-LD--IPDDALKDYATEIAVQ 74 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHT----BSSCCCGG-GC--CCTTHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc----ccccChhh-hh--hHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999986431 0000 00000000 00 0012223344555555
Q ss_pred HHhhcCC-CCce---EEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCC
Q 043953 741 FRFKTMY-DSSI---TYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNS 815 (868)
Q Consensus 741 ~~~~~~~-~~~v---~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~ 815 (868)
+...... +-++ .+. ....+..+ ++++.. +.++||+|+|++++ +++.+| -+|...+.+..
T Consensus 75 ~~~~~~~~g~~~~~~~~~-~~~g~~~~--~I~~~a~~~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~--- 138 (147)
T 3hgm_A 75 AKTRATELGVPADKVRAF-VKGGRPSR--TIVRFARKRECDLVVIGAQGT------NGDKSL----LLGSVAQRVAG--- 138 (147)
T ss_dssp HHHHHHHTTCCGGGEEEE-EEESCHHH--HHHHHHHHTTCSEEEECSSCT------TCCSCC----CCCHHHHHHHH---
T ss_pred HHHHHHhcCCCccceEEE-EecCCHHH--HHHHHHHHhCCCEEEEeCCCC------ccccce----eeccHHHHHHh---
Confidence 5544322 1112 322 12223222 222221 34799999999874 233222 38999999999
Q ss_pred CCcccEEEE
Q 043953 816 TAHASVLVV 824 (868)
Q Consensus 816 ~~~~SVLVv 824 (868)
.++++||||
T Consensus 139 ~~~~pVlvV 147 (147)
T 3hgm_A 139 SAHCPVLVV 147 (147)
T ss_dssp HCSSCEEEC
T ss_pred hCCCCEEEC
Confidence 688999986
No 23
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.50 E-value=1.7e-07 Score=89.83 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=82.7
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEF 741 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~ 741 (868)
.++|++++.|+++++.|+++|.++|+..+++|+++|+.++....... .......+ .. ...+..++..++.++++
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~---~~~~~~~~-~~--~~~~~~~~~~~~~l~~~ 79 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTP---YGTAIPLD-TE--TTYDAMLDVEKQKLSQI 79 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC-----------CTTCCCSS-SC--CCHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccc---cccccCcC-HH--HHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998653210000 00000000 00 00122334455666777
Q ss_pred HhhcCCCCceEEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCccc
Q 043953 742 RFKTMYDSSITYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHAS 820 (868)
Q Consensus 742 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~S 820 (868)
..+.... .+.+ .+..|....++++.. +.++||+|+|++++. ++. --+|.+.+.++. .++++
T Consensus 80 ~~~~~~~-~~~~---~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~------~~~-----~~~Gs~~~~vl~---~~~~p 141 (150)
T 3tnj_A 80 GNTLGID-PAHR---WLVWGEPREEIIRIAEQENVDLIVVGSHGRH------GLA-----LLLGSTANSVLH---YAKCD 141 (150)
T ss_dssp HHHHTCC-GGGE---EEEESCHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHH---HCSSE
T ss_pred HHHcCCC-cceE---EEecCCHHHHHHHHHHHcCCCEEEEecCCCC------CcC-----eEecchHHHHHH---hCCCC
Confidence 6654322 1111 222232222222221 347999999998642 222 248999999998 68899
Q ss_pred EEEEecc
Q 043953 821 VLVVQQS 827 (868)
Q Consensus 821 VLVvqq~ 827 (868)
||||...
T Consensus 142 Vlvv~~~ 148 (150)
T 3tnj_A 142 VLAVRLR 148 (150)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999754
No 24
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.48 E-value=6.6e-07 Score=86.95 Aligned_cols=145 Identities=15% Similarity=0.027 Sum_probs=86.4
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecC-----CCCCCcccccCC--C-CCccc-ccccccchhhhh
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNK-----DGESGILVEDLN--N-TEDED-LVDTARDVKEKE 732 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~-----~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~e~~ 732 (868)
.++|++++.|+++++.|+++|.++|+..+.+|+++|++++. ..... .... . ..+.. .. ...+..++
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~ 79 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSL---LLGVAGLNKSVEEFEN--ELKNKLTE 79 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------CHHHHH--HHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccc---cccccccccchhhhHH--HHHHHHHH
Confidence 56999999999999999999999999999999999998753 10000 0000 0 00000 00 00011223
Q ss_pred hHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhh
Q 043953 733 LDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETL 810 (868)
Q Consensus 733 ~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~l 810 (868)
..++.++++..+... ..+.+..+ +..|. ..+.|.+. +.++||+|+|++++ +++.+| -+|.+.+.+
T Consensus 80 ~~~~~l~~~~~~~~~-~g~~~~~~-v~~G~-~~~~I~~~a~~~~~dlIV~G~~g~------~~~~~~----~~GSv~~~v 146 (162)
T 1mjh_A 80 EAKNKMENIKKELED-VGFKVKDI-IVVGI-PHEEIVKIAEDEGVDIIIMGSHGK------TNLKEI----LLGSVTENV 146 (162)
T ss_dssp HHHHHHHHHHHHHHH-TTCEEEEE-EEEEC-HHHHHHHHHHHTTCSEEEEESCCS------SCCTTC----SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCceEEE-EcCCC-HHHHHHHHHHHcCCCEEEEcCCCC------CCccce----EecchHHHH
Confidence 345566666554322 12333222 22232 22333322 34799999999864 233333 389999999
Q ss_pred ccCCCCCcccEEEEecc
Q 043953 811 VSSNSTAHASVLVVQQS 827 (868)
Q Consensus 811 as~d~~~~~SVLVvqq~ 827 (868)
+. .++++||||...
T Consensus 147 l~---~~~~pVlvv~~~ 160 (162)
T 1mjh_A 147 IK---KSNKPVLVVKRK 160 (162)
T ss_dssp HH---HCCSCEEEECCC
T ss_pred HH---hCCCCEEEEeCC
Confidence 98 588999999653
No 25
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.47 E-value=4.9e-07 Score=85.31 Aligned_cols=134 Identities=19% Similarity=0.103 Sum_probs=82.6
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEF 741 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~ 741 (868)
.++|++++.|+++++.|+++|.++|+..+.+++++|+.++...... ....++ . .+..++..++.++++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~------~~~~~~-~-----~~~~~~~~~~~l~~~ 69 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLG------EPFFEE-A-----LRRRLERAEGVLEEA 69 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------------------CHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCcccc------ccchHH-H-----HHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999864311000 000000 0 012233445666666
Q ss_pred HhhcCCCCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCcc
Q 043953 742 RFKTMYDSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHA 819 (868)
Q Consensus 742 ~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~ 819 (868)
..+ .+-.++.+. +..|. ..+.|.+. +.++||+|+|++++. ++.++ -+|.+.+.+.. .+++
T Consensus 70 ~~~-~g~~~~~~~---~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~---~~~~ 131 (137)
T 2z08_A 70 RAL-TGVPKEDAL---LLEGV-PAEAILQAARAEKADLIVMGTRGLG------ALGSL----FLGSQSQRVVA---EAPC 131 (137)
T ss_dssp HHH-HCCCGGGEE---EEESS-HHHHHHHHHHHTTCSEEEEESSCTT------CCSCS----SSCHHHHHHHH---HCSS
T ss_pred HHH-cCCCccEEE---EEecC-HHHHHHHHHHHcCCCEEEECCCCCc------hhhhh----hhccHHHHHHh---cCCC
Confidence 654 111023332 11232 22233322 347999999998742 33222 38999999999 5889
Q ss_pred cEEEEe
Q 043953 820 SVLVVQ 825 (868)
Q Consensus 820 SVLVvq 825 (868)
+||||.
T Consensus 132 pVlvv~ 137 (137)
T 2z08_A 132 PVLLVR 137 (137)
T ss_dssp CEEEEC
T ss_pred CEEEeC
Confidence 999983
No 26
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.44 E-value=6.5e-07 Score=87.82 Aligned_cols=146 Identities=11% Similarity=-0.033 Sum_probs=86.0
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccC-----CCCCcccccccccchhhhhhHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDL-----NNTEDEDLVDTARDVKEKELDDE 736 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~e~~~d~~ 736 (868)
.++|++++.|+++++.|+++|.++|+..+++|+++|+++...........+. ....++ + .+..++..++
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~ 78 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKD-I-----KEKLKEEASR 78 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTT-S-----HHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHH-H-----HHHHHHHHHH
Confidence 5699999999999999999999999999999999999865311000000000 000000 0 0122333445
Q ss_pred HHHHHHhhcCC-CCceEEEEeecCChHHHHHHHHhh--cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccC
Q 043953 737 FINEFRFKTMY-DSSITYNDKMVSNVEELVESITTM--YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSS 813 (868)
Q Consensus 737 ~~~~~~~~~~~-~~~v~y~e~~v~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~ 813 (868)
.++++.++... +-++.+. ..+..|. ..+.|.+. +.++||+|+|++++. ++.+| -+|.+.+.+..
T Consensus 79 ~l~~~~~~~~~~g~~~~~~-~~~~~g~-~~~~I~~~a~~~~~DlIV~G~~g~~------~~~~~----~~Gsv~~~vl~- 145 (170)
T 2dum_A 79 KLQEKAEEVKRAFRAKNVR-TIIRFGI-PWDEIVKVAEEENVSLIILPSRGKL------SLSHE----FLGSTVMRVLR- 145 (170)
T ss_dssp HHHHHHHHHHHHTTCSEEE-EEEEEEC-HHHHHHHHHHHTTCSEEEEESCCCC------C--TT----CCCHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCceeee-eEEecCC-hHHHHHHHHHHcCCCEEEECCCCCC------ccccc----eechHHHHHHH-
Confidence 55655544321 1233331 1222232 22333322 347999999998642 33222 38999999998
Q ss_pred CCCCcccEEEEeccc
Q 043953 814 NSTAHASVLVVQQSS 828 (868)
Q Consensus 814 d~~~~~SVLVvqq~~ 828 (868)
.++++||||....
T Consensus 146 --~~~~PVlvv~~~~ 158 (170)
T 2dum_A 146 --KTKKPVLIIKEVD 158 (170)
T ss_dssp --HCSSCEEEECCCC
T ss_pred --hCCCCEEEEccCC
Confidence 5889999997554
No 27
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.42 E-value=1.5e-06 Score=81.81 Aligned_cols=135 Identities=18% Similarity=0.095 Sum_probs=84.4
Q ss_pred ceEEEeeccCcchHHHHHHHHHhh-cCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhh-hhHHHHHHH
Q 043953 663 LKLCMLFIGGPDDREALFYAWRMA-GKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEK-ELDDEFINE 740 (868)
Q Consensus 663 ~~I~v~f~GG~ddreAL~~A~rma-~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~d~~~~~~ 740 (868)
++|++++.|+++++.|+++|.++| +..+++|+++|+.+........ . . ... ...+..+ +..++.+++
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~--~-------~-~~~-~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEA--V-------L-AAY-DEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHH--H-------H-HHH-HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCccccc--c-------c-CcH-HHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999 9999999999998754221000 0 0 000 0001112 344566666
Q ss_pred HHhhcCCCCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCccc
Q 043953 741 FRFKTMYDSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHAS 820 (868)
Q Consensus 741 ~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~S 820 (868)
+....... .+.+.. .+..|. ..+.|.+..+++||+|+|++++. ++ .+. +|.+.+.++. .++++
T Consensus 71 ~~~~~~~~-g~~~~~-~v~~g~-~~~~I~~~a~~~dliV~G~~~~~------~~---~~~--~Gs~~~~vl~---~~~~p 133 (138)
T 3idf_A 71 FSTFFTEK-GINPFV-VIKEGE-PVEMVLEEAKDYNLLIIGSSENS------FL---NKI--FASHQDDFIQ---KAPIP 133 (138)
T ss_dssp HHHHHHTT-TCCCEE-EEEESC-HHHHHHHHHTTCSEEEEECCTTS------TT---SSC--CCCTTCHHHH---HCSSC
T ss_pred HHHHHHHC-CCCeEE-EEecCC-hHHHHHHHHhcCCEEEEeCCCcc------hH---HHH--hCcHHHHHHh---cCCCC
Confidence 66654331 222222 222333 33334333349999999998642 22 111 2999999988 68899
Q ss_pred EEEEe
Q 043953 821 VLVVQ 825 (868)
Q Consensus 821 VLVvq 825 (868)
||||.
T Consensus 134 Vlvv~ 138 (138)
T 3idf_A 134 VLIVK 138 (138)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99983
No 28
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.41 E-value=5.4e-07 Score=88.14 Aligned_cols=139 Identities=16% Similarity=0.165 Sum_probs=81.6
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEE--EeeecCCC-CCCcccccCCCCCcccccccccchhhhhhHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVV--RYVYNKDG-ESGILVEDLNNTEDEDLVDTARDVKEKELDDEFI 738 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~ 738 (868)
.++|++++.|++.++.|+++|.++|+ .+.+|+++ ++++.... .... . .++.+ .+..++..++.+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~-----~--~~~~~-----~~~~~~~~~~~l 83 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADI-----L--KDESY-----KVTGTAPIYEIL 83 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------------------CCTHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccc-----c--ccHHH-----HHHHHHHHHHHH
Confidence 57999999999999999999999999 99999999 88754311 0000 0 00000 011122344555
Q ss_pred HHHHhhcCCCCceE-EEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCC
Q 043953 739 NEFRFKTMYDSSIT-YNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNST 816 (868)
Q Consensus 739 ~~~~~~~~~~~~v~-y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~ 816 (868)
+++.+..... .+. +..++ ..|....++++.. +.++||+|+|++++. ++.+| -+|.+.+.++. .
T Consensus 84 ~~~~~~~~~~-gv~~v~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~---~ 148 (163)
T 1tq8_A 84 HDAKERAHNA-GAKNVEERP-IVGAPVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSR---R 148 (163)
T ss_dssp HHHHHHHHTT-TCCEEEEEE-ECSSHHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHH---H
T ss_pred HHHHHHHHHc-CCCeEEEEE-ecCCHHHHHHHHHHhcCCCEEEECCCCCC------cccce----eeccHHHHHHH---h
Confidence 5555443221 122 22222 2332222333321 467999999998652 22222 38999999998 5
Q ss_pred CcccEEEEeccc
Q 043953 817 AHASVLVVQQSS 828 (868)
Q Consensus 817 ~~~SVLVvqq~~ 828 (868)
++++||||....
T Consensus 149 a~~PVlvV~~~~ 160 (163)
T 1tq8_A 149 AKVDVLIVHTTE 160 (163)
T ss_dssp TTCEEEEECCC-
T ss_pred CCCCEEEEeCCC
Confidence 889999997543
No 29
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.39 E-value=1.5e-06 Score=82.29 Aligned_cols=131 Identities=9% Similarity=0.054 Sum_probs=83.0
Q ss_pred eEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeecc-ccccchhh--hhhhccccCCCccchhhhccchHHHHHHH
Q 043953 485 RILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVEL-TRRASAML--IVHDAFRTKTSDQNSIRELADSDLIINAF 561 (868)
Q Consensus 485 riLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel-~~r~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~af 561 (868)
+||+|+++.++....++.+..++...+ ..++++|+++- +....... ...+. .....++..+.+
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l 69 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKRHD--AKLSIIHVDVNFSDLYTGLIDVNMSSM------------QDRISTETQKAL 69 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEECCGGGCCCCEEHHHHHH------------TTCCCCHHHHHH
T ss_pred eEEEEecCchhhHHHHHHHHHHHHhcC--CEEEEEEEecCchhhhccccccchHHH------------HHHHHHHHHHHH
Confidence 799999999998888888888775433 46799999842 22111000 00000 000112233334
Q ss_pred HHHHhhCCCeeE-EEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 562 RHYQDRNDDITV-QPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 562 ~~~~~~~~~v~v-~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
+++.+. .++.+ +..... .+..+.|++.|++.++|+|+||.| +.... .++++.++|++++||||.|+
T Consensus 70 ~~~~~~-~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~~~--------~lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 70 LDLAES-VDYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDFWS--------KLMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp HHHHHH-SSSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCCHH--------HHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHH-cCCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cchhh--------hhcchHHHHHhcCCCCEEEe
Confidence 444443 23333 233333 478999999999999999999998 54221 14577799999999999887
Q ss_pred ec
Q 043953 641 VD 642 (868)
Q Consensus 641 vd 642 (868)
-.
T Consensus 137 ~~ 138 (141)
T 1jmv_A 137 PL 138 (141)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 30
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.31 E-value=6.1e-07 Score=86.65 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=85.5
Q ss_pred cceEEEeec--cCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHH
Q 043953 662 GLKLCMLFI--GGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFIN 739 (868)
Q Consensus 662 ~~~I~v~f~--GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~ 739 (868)
.++|++++. |+++.+.|+++|.++|+..+++|+++|+++....... .....+ ..+..++..++.++
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~------~~~~~~------~~~~~~~~~~~~l~ 82 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIF------DSLTPS------KIQAKRKHVEDVVA 82 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC------CSSHHH------HHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc------ccCCHH------HHHHHHHHHHHHHH
Confidence 679999999 9999999999999999999999999999875422110 000000 01222334455666
Q ss_pred HHHhhcCCCC--ceEEEEeecCChHHHHHHHHh-h-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCC
Q 043953 740 EFRFKTMYDS--SITYNDKMVSNVEELVESITT-M-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNS 815 (868)
Q Consensus 740 ~~~~~~~~~~--~v~y~e~~v~~~~e~~~~i~~-~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~ 815 (868)
+++++....+ .+.+. +..+|....++++. . +.++||+|+|++++. ++ +. -+|.+.+.++.
T Consensus 83 ~~~~~~~~~g~~~~~~~--v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~------~~----~~-~~Gs~~~~vl~--- 146 (156)
T 3fg9_A 83 EYVQLAEQRGVNQVEPL--VYEGGDVDDVILEQVIPEFKPDLLVTGADTEF------PH----SK-IAGAIGPRLAR--- 146 (156)
T ss_dssp HHHHHHHHHTCSSEEEE--EEECSCHHHHHHHTHHHHHCCSEEEEETTCCC------TT----SS-SCSCHHHHHHH---
T ss_pred HHHHHHHHcCCCceEEE--EEeCCCHHHHHHHHHHHhcCCCEEEECCCCCC------cc----ce-eecchHHHHHH---
Confidence 6654432211 23322 22223333333333 1 467999999998752 22 11 38999999998
Q ss_pred CCcccEEEEe
Q 043953 816 TAHASVLVVQ 825 (868)
Q Consensus 816 ~~~~SVLVvq 825 (868)
.++++||||.
T Consensus 147 ~a~~PVlvV~ 156 (156)
T 3fg9_A 147 KAPISVIVVR 156 (156)
T ss_dssp HCSSEEEEEC
T ss_pred hCCCCEEEeC
Confidence 6889999984
No 31
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.19 E-value=5.3e-06 Score=78.14 Aligned_cols=130 Identities=5% Similarity=-0.038 Sum_probs=79.9
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEee-cc-ccccchhhhhhhccccCCCccchhhhccchHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLV-EL-TRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAF 561 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLv-el-~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 561 (868)
-|||+|+++.+.....++.+..++...+ ..++++|++ +. +.. +......... .....+ +..+..++.++.+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~--~~~~~~~~~~-~~~~~~--~~~~~~~~~l~~~ 77 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKLG--AELDILAVLEDVYNLE--RANVTFGLPF-PPEIKE--ESKKRIERRLREV 77 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTTC--CEEEEEEECHHHHHHH--HHHHHHCCCC-CTHHHH--HHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHcC--CeEEEEEEeccccccc--ccccccCCCC-ChHHHH--HHHHHHHHHHHHH
Confidence 3799999999999999998888886543 567999998 53 111 0000000000 000000 0112223344433
Q ss_pred HHH-HhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 562 RHY-QDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 562 ~~~-~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
+.+ ... .+ .++..... .+..+.|++.|++.++|+|+||.|++ + +.++|++++||||.|+
T Consensus 78 ~~~~~~~-~~-~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~g~---------s------v~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 78 WEKLTGS-TE-IPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPS---------A------YLCKVIDGLNLASLIV 137 (138)
T ss_dssp HHHHHSC-CC-CCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCG---------G------GTHHHHHHSSSEEEEC
T ss_pred HHHhhcc-CC-cceEEEEc---CCHHHHHHHHHHhcCCCEEEEeCCCC---------c------hHHHHHHhCCCceEee
Confidence 221 111 33 45444332 58999999999999999999999865 1 2279999999999774
No 32
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.18 E-value=1.5e-06 Score=82.22 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=81.1
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeec-CCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYN-KDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINE 740 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~ 740 (868)
.++|++++.|+++++.|+++|.++|+..+++++++|+.+. ....... ...... ...+..++..++.+++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~l~~ 71 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGL--------IDVNMS--SMQDRISTETQKALLD 71 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCC--------EEHHHH--HHTTCCCCHHHHHHHH
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccc--------cccchH--HHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999843 1100000 000000 0001111223455666
Q ss_pred HHhhcCCCCceEEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCcc
Q 043953 741 FRFKTMYDSSITYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHA 819 (868)
Q Consensus 741 ~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~ 819 (868)
+..+.... + .+..+..|....++++.. ..++||+|+|++ +. ++ . .+|.+.+.++. .+++
T Consensus 72 ~~~~~~~~--~--~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~------~~---~---~lgs~~~~vl~---~~~~ 131 (141)
T 1jmv_A 72 LAESVDYP--I--SEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QD------FW---S---KLMSSTRQVMN---TIKI 131 (141)
T ss_dssp HHHHSSSC--C--CCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CC------CH---H---HHHHHHHHHHT---TCCS
T ss_pred HHHHcCCC--c--eEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cc------hh---h---hhcchHHHHHh---cCCC
Confidence 65553211 1 111222232222223321 456999999998 42 22 1 26888999988 6889
Q ss_pred cEEEEecc
Q 043953 820 SVLVVQQS 827 (868)
Q Consensus 820 SVLVvqq~ 827 (868)
+||||...
T Consensus 132 pVlvv~~~ 139 (141)
T 1jmv_A 132 DMLVVPLR 139 (141)
T ss_dssp EEEEEECC
T ss_pred CEEEeeCC
Confidence 99999654
No 33
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.14 E-value=1.1e-05 Score=79.25 Aligned_cols=148 Identities=10% Similarity=0.054 Sum_probs=79.0
Q ss_pred cceEEEeeccCc---------chHHHHHHHHHhh-cC--CCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchh
Q 043953 662 GLKLCMLFIGGP---------DDREALFYAWRMA-GK--PGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVK 729 (868)
Q Consensus 662 ~~~I~v~f~GG~---------ddreAL~~A~rma-~~--~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (868)
.++|++++.|++ .++.|+++|.+++ +. .+++|+++|+.+........ . .......+.+. ...+.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~ 80 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDD-V-DSIYASPEDFR--DMRQS 80 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC------------CCCCSHHHHH--HHTTS
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccc-c-ccccCCHHHHH--HHHHH
Confidence 679999999999 8999999999986 54 69999999998543110000 0 00000000000 00011
Q ss_pred hhhhHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhh-cCCccEEEEccCCCCCCccccCCCCCCCCCccccchh
Q 043953 730 EKELDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTM-YGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGE 808 (868)
Q Consensus 730 e~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd 808 (868)
.++..++.++++...... ..+.+.-++ ..|....++++.. +.++||+|+|+++. +++.+| -+|.+.+
T Consensus 81 ~~~~~~~~l~~~~~~~~~-~g~~~~~~v-~~G~~~~~I~~~a~~~~~DLIVmG~~g~------~~~~~~----~~Gsva~ 148 (175)
T 2gm3_A 81 NKAKGLHLLEFFVNKCHE-IGVGCEAWI-KTGDPKDVICQEVKRVRPDFLVVGSRGL------GRFQKV----FVGTVSA 148 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEEEEEE-EESCHHHHHHHHHHHHCCSEEEEEECCC------C------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHH-CCCceEEEE-ecCCHHHHHHHHHHHhCCCEEEEeCCCC------Chhhhh----hcCchHH
Confidence 122234566666544321 123332222 2232222233322 34799999999864 233333 3899999
Q ss_pred hhccCCCCCcccEEEEeccc
Q 043953 809 TLVSSNSTAHASVLVVQQSS 828 (868)
Q Consensus 809 ~las~d~~~~~SVLVvqq~~ 828 (868)
.++. .++++||||....
T Consensus 149 ~vl~---~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 149 FCVK---HAECPVMTIKRNA 165 (175)
T ss_dssp HHHH---HCSSCEEEEECCG
T ss_pred HHHh---CCCCCEEEEcCCc
Confidence 9998 5889999997543
No 34
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.11 E-value=3.5e-06 Score=90.23 Aligned_cols=136 Identities=15% Similarity=0.037 Sum_probs=84.0
Q ss_pred CCeEEEeecCCCC-------hhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchH
Q 043953 483 ELRILTCIHSVGN-------LSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSD 555 (868)
Q Consensus 483 elriLv~v~~~~~-------~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (868)
--|||+|++..+. ....++.+..++...+ ..++++|+++....... .+.. .. .....+
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~--~~~~------~~-----~~~~~~ 198 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAK--ATLHVISAHPSPMLSSA--DPTF------QL-----SETIEA 198 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTT--CEEEEEEEEC-----------CH------HH-----HHHHHH
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcC--CeEEEEEEecCcccccc--Cchh------HH-----HHHHHH
Confidence 3589999999887 6777777777765443 56799999886443210 0000 00 001112
Q ss_pred HHHHHHHHHHhhCCCee-EEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCC
Q 043953 556 LIINAFRHYQDRNDDIT-VQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAP 634 (868)
Q Consensus 556 ~i~~af~~~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~Ap 634 (868)
+..+.++.+.++. ++. ++..... .+..+.|++.|++.++|+|+||.|++....+.+.++ +.++|++++|
T Consensus 199 ~~~~~l~~~~~~~-g~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gs------v~~~vl~~~~ 268 (290)
T 3mt0_A 199 RYREACRTFQAEY-GFSDEQLHIEE---GPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGN------TAEVVLDTLE 268 (290)
T ss_dssp HHHHHHHHHHHHH-TCCTTTEEEEE---SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCH------HHHHHHTTCS
T ss_pred HHHHHHHHHHHHc-CCCcceEEEec---cCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecch------HHHHHHhcCC
Confidence 2233334444332 221 2222222 489999999999999999999999987766554443 4499999999
Q ss_pred cceEEEecC
Q 043953 635 CSIGILVDR 643 (868)
Q Consensus 635 CsVgIlvdr 643 (868)
|||.|+-.+
T Consensus 269 ~pVLvv~~~ 277 (290)
T 3mt0_A 269 SDVLVLKPD 277 (290)
T ss_dssp SEEEEECCH
T ss_pred CCEEEECCC
Confidence 999887443
No 35
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.08 E-value=3.7e-06 Score=88.81 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=85.8
Q ss_pred ceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCccccc-cccc-chhhhhhHHHHHHH
Q 043953 663 LKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLV-DTAR-DVKEKELDDEFINE 740 (868)
Q Consensus 663 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~e~~~d~~~~~~ 740 (868)
++|++++.|++.++.|+++|.++|+..+++++++|+++........ ..+.....++ +. ...+ .+..++..++.+++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 78 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPE-LLDFGALTVP-VPVLRTELERALALRGEAVLER 78 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHH-HC-------C-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCccccc-ccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999998643110000 0000000000 00 0000 01112333455666
Q ss_pred HHhhcCC-CCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCCcc
Q 043953 741 FRFKTMY-DSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTAHA 819 (868)
Q Consensus 741 ~~~~~~~-~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~~~ 819 (868)
+...... +-.+.+. +..|....++++. +.++||+|+|+++.. .++.+| -+|...+.++. .+++
T Consensus 79 ~~~~~~~~g~~~~~~---~~~g~~~~~I~~~-~~~~dliV~G~~g~~-----~~~~~~----~~Gs~~~~v~~---~a~~ 142 (268)
T 3ab8_A 79 VRQSALAAGVAVEAV---LEEGVPHEAILRR-ARAADLLVLGRSGEA-----HGDGFG----GLGSTADRVLR---ASPV 142 (268)
T ss_dssp HHHHHHHTTCCEEEE---EEEECHHHHHHHH-HTTCSEEEEESSCTT-----SCTTCC----SCCHHHHHHHH---HCSS
T ss_pred HHHHHHhCCCCeEEE---EecCCHHHHHHhh-ccCCCEEEEeccCCC-----cccccc----ccchhHHHHHH---hCCC
Confidence 6554322 1123332 2233333333334 778999999998641 033222 38999999998 6889
Q ss_pred cEEEEecc
Q 043953 820 SVLVVQQS 827 (868)
Q Consensus 820 SVLVvqq~ 827 (868)
+||||...
T Consensus 143 PVlvv~~~ 150 (268)
T 3ab8_A 143 PVLLAPGE 150 (268)
T ss_dssp CEEEECSS
T ss_pred CEEEECCC
Confidence 99999865
No 36
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.03 E-value=2.4e-05 Score=73.58 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=37.2
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEee-e
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYV-Y 700 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~-~ 700 (868)
.++|++++.|.++++.|+++|.++|+..+.+|+++|++ +
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 57999999999999999999999999999999999998 5
No 37
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.03 E-value=5.4e-06 Score=89.64 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=86.4
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCcccccCCCCCcccccccccchhhhhhHHHHHHHH
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDTARDVKEKELDDEFINEF 741 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~ 741 (868)
.++|++++.|+++++.|+++|.++|+..+++|+++|++++...... ......+ . .+..++..++.++++
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~-----~~~~~~~-~-----~~~~~~~~~~~l~~~ 87 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWL-----EVPLPPG-V-----LRWQQDHGRHLIDDA 87 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTT-----CCCCCHH-H-----HHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccc-----cCCCCch-h-----hHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999864311000 0000000 0 011122233444444
Q ss_pred HhhcCC----CCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCCCCCccccCCCCCCCCCccccchhhhccCCCCC
Q 043953 742 RFKTMY----DSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDNVKSPLTMGLSGWVDNPELGPVGETLVSSNSTA 817 (868)
Q Consensus 742 ~~~~~~----~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~s~~~~gl~~w~e~~eLG~igd~las~d~~~ 817 (868)
++.... ...+.+.-++. .|. ..+.|.+..+++||+|+|+++.. ++.+| -+|...+.++. .+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~g~-~~~~I~~~a~~~DliV~G~~g~~------~~~~~----~~Gs~~~~vl~---~~ 152 (309)
T 3cis_A 88 LKVVEQASLRAGPPTVHSEIV-PAA-AVPTLVDMSKDAVLMVVGCLGSG------RWPGR----LLGSVSSGLLR---HA 152 (309)
T ss_dssp HHHHHHHCSSSCCSCEEEEEE-SSC-HHHHHHHHGGGEEEEEEESSCTT------CCTTC----CSCHHHHHHHH---HC
T ss_pred HHHHHHhcccCCCceEEEEEe-cCC-HHHHHHHHhcCCCEEEECCCCCc------ccccc----ccCcHHHHHHH---hC
Confidence 433211 11223322222 333 33444444558999999998642 23222 38999999999 68
Q ss_pred cccEEEEeccc
Q 043953 818 HASVLVVQQSS 828 (868)
Q Consensus 818 ~~SVLVvqq~~ 828 (868)
+++||||....
T Consensus 153 ~~PVlvv~~~~ 163 (309)
T 3cis_A 153 HCPVVIIHDED 163 (309)
T ss_dssp SSCEEEECTTC
T ss_pred CCCEEEEcCCc
Confidence 99999997653
No 38
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.02 E-value=6.6e-06 Score=89.11 Aligned_cols=147 Identities=9% Similarity=0.028 Sum_probs=88.6
Q ss_pred CCeEEEeecCCCC-------hhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchH
Q 043953 483 ELRILTCIHSVGN-------LSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSD 555 (868)
Q Consensus 483 elriLv~v~~~~~-------~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (868)
--|||+|+++.+. ....++.+..++........++++|+++........-.+. .. .+. ...+..+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~------~~-~~~-~~~~~~~ 227 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPD------FD-PNL-YNNALRG 227 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTT------CC-HHH-HHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCc------cc-HHH-HHHHHHH
Confidence 4589999998874 3556666665554330023569999988654321100000 00 000 0111123
Q ss_pred HHHHHHHHHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCc
Q 043953 556 LIINAFRHYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPC 635 (868)
Q Consensus 556 ~i~~af~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApC 635 (868)
+..+.++.+.++.+...++....- .+..+.|++.|++.++|+|+||.|++....+ ..++.+.++|++++||
T Consensus 228 ~~~~~l~~~~~~~~~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~------~~~Gsv~~~vl~~~~~ 298 (319)
T 3olq_A 228 QHLIAMKELRQKFSIPEEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTGLSA------AFLGNTAEQLIDHIKC 298 (319)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCSTHH------HHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCcccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccCCcc------ccccHHHHHHHhhCCC
Confidence 334455555554321122222222 4789999999999999999999998765433 2467778999999999
Q ss_pred ceEEEecCCCC
Q 043953 636 SIGILVDRGIG 646 (868)
Q Consensus 636 sVgIlvdrg~~ 646 (868)
||.|+-.+|..
T Consensus 299 pVLvv~~~~~~ 309 (319)
T 3olq_A 299 DLLAIKPDGFT 309 (319)
T ss_dssp EEEEECCTTCC
T ss_pred CEEEECCCCCC
Confidence 99998666543
No 39
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=97.89 E-value=1.7e-05 Score=84.99 Aligned_cols=119 Identities=9% Similarity=0.068 Sum_probs=84.2
Q ss_pred CCeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHH
Q 043953 483 ELRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFR 562 (868)
Q Consensus 483 elriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 562 (868)
.-||++|+++.+.....++.+..++...+ ..++++|+.+... . ++.++.+.
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~~~~--~~l~ll~v~~~~~----------~-----------------~~~l~~~~ 220 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVKKTG--GELHIIHVSEDGD----------K-----------------TADLRVME 220 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEECSSSC----------C-----------------HHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhhhcC--CEEEEEEEccCch----------H-----------------HHHHHHHH
Confidence 45899999998888888888877764433 4679999976432 0 12233333
Q ss_pred HHHhhCCCeeEEEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEE
Q 043953 563 HYQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGIL 640 (868)
Q Consensus 563 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIl 640 (868)
++.+. .++.++....- .+..+.|++.|++.++|+|+||.|++....+. .++.+.++|++++||||.|+
T Consensus 221 ~~l~~-~~~~~~~~~~~---g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 221 EVIGA-EGIEVHVHIES---GTPHKAILAKREEINATTIFMGSRGAGSVMTM------ILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHH-TTCCEEEEEEC---SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHH------HHHCHHHHHHHHCSSCEEEE
T ss_pred HHHHH-cCCcEEEEEec---CCHHHHHHHHHHhcCcCEEEEeCCCCCCccce------eeCcHHHHHHhcCCCCEEEE
Confidence 33333 35556554332 48999999999999999999999987544332 35566699999999999887
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.81 E-value=0.015 Score=63.18 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhhccChHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHH---Hhhc
Q 043953 122 SSLGLTFYMFLVGLEMDVSAVKRMEK---KSLSIAFAGIVIPFCIGAALHFVPIHEGITRESPNLGALFWAIS---LTIT 195 (868)
Q Consensus 122 a~lgl~~llF~~Gle~d~~~l~~~~k---~~~~ia~~~~llp~~~g~~~~~~l~~~~~~~~~~~~~~l~lg~~---ls~T 195 (868)
....+.+.||..|++++.+++++..+ ......+..+++-=+++++++.++... ..+..|.. .+++
T Consensus 45 i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~---------~~~~~Glil~~~~P~ 115 (332)
T 3zux_A 45 IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLP---------AEIAVGVILVGCCPG 115 (332)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHhcCCc
Confidence 44678889999999999999985443 333333445444333455555544221 12222222 2222
Q ss_pred cHHHHHHHHHhcCcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043953 196 SFPDLARILSDVKLLHTDIGKTALSSAIVNDLSSWFLLVLVIVAFN 241 (868)
Q Consensus 196 s~~vv~~iL~el~ll~s~~g~l~ls~a~v~D~~~~~ll~~~~~~~~ 241 (868)
.. .+.++..+- +.+. .++.+...++.+++.+.+-+...+..
T Consensus 116 ~~--~s~v~t~~a--~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 116 GT--ASNVMTYLA--RGNV-ALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp CT--HHHHHHHHT--TCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh--HHHHHHHHh--CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 21 122233322 2222 56777788888888887766655543
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=94.75 E-value=0.59 Score=48.94 Aligned_cols=220 Identities=11% Similarity=0.087 Sum_probs=138.3
Q ss_pred CeEEEeecCCCChhhHHHHHHhhccCCCCCceEEEEEeeccccccchhhhhhhccccCCCccchhhhccchHHHHHHHHH
Q 043953 484 LRILTCIHSVGNLSGIINLLELSNATKKSPLCVFAVHLVELTRRASAMLIVHDAFRTKTSDQNSIRELADSDLIINAFRH 563 (868)
Q Consensus 484 lriLv~v~~~~~~~~li~Ll~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 563 (868)
=++||+..+|..-..++.++..+...+ ..+.+.+++.-..+ ..+ .++ +.+++.
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~~---G~ltv~~i~p~~~~--~~l---------------------~~q-l~~l~~ 73 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYPK---GSVKLLGLAGNTDK--ENL---------------------LSQ-LPSISE 73 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTTT---CEEEEEECC---CT--TCH---------------------HHH-HHHHHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccCc---eeEEEEEEccCCCc--cHH---------------------HHH-HHHHHH
Confidence 379999999999999999999999665 45677777321111 000 122 255566
Q ss_pred HHhhCCCeeEEEEEEEecCCCchhHHHHHHHhc-----CccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceE
Q 043953 564 YQDRNDDITVQPLTAVSSFTSIHEDIFEIAEDK-----VVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIG 638 (868)
Q Consensus 564 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~-----~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVg 638 (868)
|-++ .++. .+.++-.-.+.++++..+.+.. +++.|+|||..+.. ....|+.+.+.. .++--.|.
T Consensus 74 ~l~~-r~v~--a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~-~~~~~nVl 142 (294)
T 3g40_A 74 GFQE-EGVF--SSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKA-SMYRMGVL 142 (294)
T ss_dssp HHHH-TTCE--EEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHH-HHTTCEEE
T ss_pred HHHh-CCce--eEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHH-HHhCceEE
Confidence 6555 3544 3444444468899999998886 48999999975432 234677777664 44466777
Q ss_pred EEecCCCCCccccccccccccCccceEEEeecc--------C--cchHHHHHHHHHhhcCCCeEEEEEEeeecCCCCCCc
Q 043953 639 ILVDRGIGSAVITSAQSSLHGRQGLKLCMLFIG--------G--PDDREALFYAWRMAGKPGVNLTVVRYVYNKDGESGI 708 (868)
Q Consensus 639 Ilvdrg~~~~~~~~~~~~~~~~~~~~I~v~f~G--------G--~ddreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~ 708 (868)
||-+....+. .. .++|=+=.-| | .+-..++-+|-.+..+.++++.++.+++.
T Consensus 143 il~~~~~~~f------g~-----~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------- 204 (294)
T 3g40_A 143 LFSKHPQAGL------GR-----QNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------- 204 (294)
T ss_dssp EEECCTTTTT------TT-----SCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS-------
T ss_pred EEecCCccCC------CC-----CceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC-------
Confidence 7732211110 00 3456544222 2 45567999999999999999999999742
Q ss_pred ccccCCCCCcccccccccchhhhhhHHHHHHHHHhhcCCCCceEEEEeecCChHHHHHHHHhhcCCccEEEEccCCC
Q 043953 709 LVEDLNNTEDEDLVDTARDVKEKELDDEFINEFRFKTMYDSSITYNDKMVSNVEELVESITTMYGEYELYIIGRGDN 785 (868)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~ 785 (868)
|.+++..+.+++++.+...-.... + +|. .+..++|++ ..+-||+++|-...
T Consensus 205 -------------------e~a~~~a~~~l~~Lv~~~Ri~a~~-~---vv~--~~F~~il~~-s~~ADL~flGl~~~ 255 (294)
T 3g40_A 205 -------------------AIQAQAAENFLQSLAELARIPNVK-M---QVL--RENPIKSSK-LPFASLHIFSLDPN 255 (294)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCCSCE-E---EEE--SSCTTTSSS-CCCCSEEEEECCSS
T ss_pred -------------------HHHHHHHHHHHHHHHHHhcCCceE-E---Eec--CchHHHHhh-CcCCCEEEEcCCCC
Confidence 445666788888888765433222 2 232 445566777 47799999998764
No 42
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=72.70 E-value=38 Score=36.21 Aligned_cols=125 Identities=13% Similarity=0.066 Sum_probs=69.1
Q ss_pred HHHHhhcCC-CchhhHHHHHHHHHHHHhHHHHHHHHhhcccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 043953 325 FIFGLIIPN-GELAINIMERTEEFISGVWLPSFIVVSGLRTNFLELFSKT-KLFYLLLTTIVATSAKILSTVLVALCYGM 402 (868)
Q Consensus 325 fvaGl~l~~-~~~~~~l~~~l~~~~~~l~~plfFv~~Gl~~dl~~l~~~~-~~~~~~~ii~~~~~~K~l~~~l~~~~~~~ 402 (868)
.++|...|. ... ++.. ....+.+.+...|+++++..+.... .+.......+.-++...+.++..++.++.
T Consensus 28 ~~lg~~~P~~~~~-------~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFKW-------AGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTGG-------GGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhhh-------hHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466677776 221 1122 2346677788889999988876421 45555555666777788888888888877
Q ss_pred ChHHHHHHHHHH-hhhhhHHHHHHhhccccccCchHHHHHHHHHHHHHHHhHHHHHHHhh
Q 043953 403 PVRDGVALGGLM-NTKGVMALIVLNEGRSLKAIDNILMAAMVFMLLLMTGLVGPIFFLAN 461 (868)
Q Consensus 403 ~~~e~~~lg~~m-~~rG~v~lil~~~~~~~~ii~~~~~~~lv~~~lv~t~i~~plv~~l~ 461 (868)
+.....-+-+.. .|-|..+.++...+. | |.+.-..++....+.+.++.|+.-.++
T Consensus 100 ~~~~~~Glil~~~~P~~~~s~v~t~~a~--G--d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 100 PAEIAVGVILVGCCPGGTASNVMTYLAR--G--NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp CHHHHHHHHHHHHSCCCTHHHHHHHHTT--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhcCCchhHHHHHHHHhC--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664443333332 334444444333222 1 223333333333333556667766655
No 43
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=58.97 E-value=36 Score=37.82 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=34.6
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcC-CCeEEEEEEeee
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGK-PGVNLTVVRYVY 700 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~-~~v~ltvl~~~~ 700 (868)
..+|+|.|.||+|+--.|.++.++.+. .+.++.++|+..
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdh 52 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHH 52 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEEC
Confidence 358999999999999999999998877 889999999953
No 44
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=57.56 E-value=15 Score=37.79 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.2
Q ss_pred CcchHHHHHHHHHhhcCCCe--EEEEEEe
Q 043953 672 GPDDREALFYAWRMAGKPGV--NLTVVRY 698 (868)
Q Consensus 672 G~ddreAL~~A~rma~~~~v--~ltvl~~ 698 (868)
.|.|.+|++.|.|+.+. +. ++|++.+
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~ 66 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSC 66 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEe
Confidence 58999999999999987 55 8888766
No 45
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=56.06 E-value=16 Score=37.58 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.2
Q ss_pred CcchHHHHHHHHHhhcCCCe--EEEEEEe
Q 043953 672 GPDDREALFYAWRMAGKPGV--NLTVVRY 698 (868)
Q Consensus 672 G~ddreAL~~A~rma~~~~v--~ltvl~~ 698 (868)
.|.|.+|++.|.|+.+. +. ++|++.+
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~ 63 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSI 63 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEe
Confidence 58899999999999987 55 8888766
No 46
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=55.80 E-value=0.19 Score=34.78 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=23.9
Q ss_pred HHHHHHHHHhchhhhHHHHHHHhhcCC
Q 043953 307 VVCGFIADGCGMHSMAGGFIFGLIIPN 333 (868)
Q Consensus 307 ~~~~~lae~~g~~~~lGafvaGl~l~~ 333 (868)
+++++++|.+|+|++++.+.+|+.+.+
T Consensus 4 y~~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 4 YMAYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp STTTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHhh
Confidence 456788999999999999999999875
No 47
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=53.99 E-value=2.5 Score=29.12 Aligned_cols=27 Identities=4% Similarity=0.149 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCc
Q 043953 183 LGALFWAISLTITSFPDLARILSDVKL 209 (868)
Q Consensus 183 ~~~l~lg~~ls~Ts~~vv~~iL~el~l 209 (868)
..++++|+++|+|++..+..++++++.
T Consensus 4 ~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 4 KDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 457789999999999999999999886
No 48
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=52.30 E-value=13 Score=38.62 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=22.4
Q ss_pred CcchHHHHHHHHHhhcCCCe--EEEEEEe
Q 043953 672 GPDDREALFYAWRMAGKPGV--NLTVVRY 698 (868)
Q Consensus 672 G~ddreAL~~A~rma~~~~v--~ltvl~~ 698 (868)
.|.|.+|++.|.|+++..+. ++|++.+
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~ 64 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSV 64 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 58999999999999876454 8887766
No 49
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=49.23 E-value=23 Score=37.51 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=33.6
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeE-EEEEEeee
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVN-LTVVRYVY 700 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~-ltvl~~~~ 700 (868)
..+|++.+.||+|+--.|.++.+..+..+.+ +.++++..
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~ 63 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNH 63 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEEC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEEC
Confidence 4589999999999999999999988777777 88998853
No 50
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=47.99 E-value=22 Score=39.99 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=34.8
Q ss_pred cceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEeee
Q 043953 662 GLKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYVY 700 (868)
Q Consensus 662 ~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~~ 700 (868)
..+|+|.|.||+|+--+|.++.++.+..+.++.++|+..
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdh 56 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDH 56 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEEC
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEEC
Confidence 458999999999999999999999888888999999964
No 51
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=45.22 E-value=23 Score=37.88 Aligned_cols=37 Identities=19% Similarity=0.093 Sum_probs=30.6
Q ss_pred ceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEee
Q 043953 663 LKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYV 699 (868)
Q Consensus 663 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~ 699 (868)
.++++.|.||+|+--.|.++.+.....+..+.++++.
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vD 83 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVD 83 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEEC
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEE
Confidence 4899999999999999999999876545567778774
No 52
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=38.71 E-value=1.4e+02 Score=31.35 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=54.9
Q ss_pred ceEEEeeccCcchHHHHHHHHHhh-c-----------------CCCeEEEEEEeeecCCCCCCcccccCCCCCccccccc
Q 043953 663 LKLCMLFIGGPDDREALFYAWRMA-G-----------------KPGVNLTVVRYVYNKDGESGILVEDLNNTEDEDLVDT 724 (868)
Q Consensus 663 ~~I~v~f~GG~ddreAL~~A~rma-~-----------------~~~v~ltvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (868)
.+|++.|.||+|+--.|.++.+.. + .++..+.++++.+..
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~---------------------- 111 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE---------------------- 111 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT----------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC----------------------
Confidence 379999999999999999988863 1 134567777774322
Q ss_pred ccchhhhhhHHHHHHHHHhhcCCCCceEEEEeecC-----ChHHHHHHHHhhcCCccEEEEccCCCC
Q 043953 725 ARDVKEKELDDEFINEFRFKTMYDSSITYNDKMVS-----NVEELVESITTMYGEYELYIIGRGDNV 786 (868)
Q Consensus 725 ~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~e~~v~-----~~~e~~~~i~~~~~~~DL~iVGr~~~~ 786 (868)
+.....+|++++.+++. +........ .-.+............+.+++|.|.+.
T Consensus 112 -----~fpet~~fv~~~~~~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 112 -----TFPTLENFVLETSERYC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp -----CCHHHHHHHHHHHHHTT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred -----CCHHHHHHHHHHHHHcC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 12236677777777652 222211111 111222222232345789999999754
No 53
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=33.84 E-value=91 Score=26.87 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=40.1
Q ss_pred CchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecC
Q 043953 584 SIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDR 643 (868)
Q Consensus 584 ~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdr 643 (868)
...+.|.+++++.+++.||+|..++. ||.........+.+.+++-++ +.+|- ++|-
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV~-~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEVE-LWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEEE-EECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCEE-EECC
Confidence 45678999999999999999987764 444333334567777777666 88884 5554
No 54
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=30.44 E-value=1.5e+02 Score=31.10 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.7
Q ss_pred ceEEEeeccCcchHHHHHHHHHh
Q 043953 663 LKLCMLFIGGPDDREALFYAWRM 685 (868)
Q Consensus 663 ~~I~v~f~GG~ddreAL~~A~rm 685 (868)
.++++.|.||+|+--.|.++.+-
T Consensus 59 ~~ialSfSGGKDStVLLhL~~ka 81 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSC 81 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHH
Confidence 37999999999999999999875
No 55
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=24.78 E-value=1.1e+02 Score=28.81 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=32.3
Q ss_pred EEEEEEecCCCchhHHHHHHHhcCccEEEecCCCCCCCC
Q 043953 574 QPLTAVSSFTSIHEDIFEIAEDKVVALILIPFHKQPTAD 612 (868)
Q Consensus 574 ~~~t~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~ 612 (868)
.-...+-|...|+..|.++|++.++|+||-|........
T Consensus 91 DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~~~ 129 (153)
T 2k4m_A 91 ALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDIVT 129 (153)
T ss_dssp EEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcCCC
Confidence 345566788999999999999999999999997765433
No 56
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=22.63 E-value=84 Score=32.10 Aligned_cols=36 Identities=8% Similarity=-0.167 Sum_probs=29.8
Q ss_pred ceEEEeeccCcchHHHHHHHHHhhcCCCeEEEEEEee
Q 043953 663 LKLCMLFIGGPDDREALFYAWRMAGKPGVNLTVVRYV 699 (868)
Q Consensus 663 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvl~~~ 699 (868)
.++++.|.||+|+--.|.++.+.... +..+.++++.
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iD 77 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFID 77 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEec
Confidence 37999999999999999999998764 4566777774
No 57
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=22.22 E-value=5.4e+02 Score=26.30 Aligned_cols=17 Identities=18% Similarity=-0.259 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043953 271 IFWFVLRPCIAWMIKET 287 (868)
Q Consensus 271 ~~~~v~r~~~~~l~~~~ 287 (868)
++..+.+.+..++.++.
T Consensus 33 i~~~i~~~l~~~~~~~~ 49 (285)
T 3udc_A 33 IGIKFADFLIYRFYKLY 49 (285)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555554
No 58
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=21.12 E-value=1.9e+02 Score=26.89 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=42.6
Q ss_pred CCCchhHHHHHHHhcCccEEEecCCCCCCCCCCccccchhhHHHHHHHhccCCcceEEEecCC
Q 043953 582 FTSIHEDIFEIAEDKVVALILIPFHKQPTADGELQGENHQIREVNNNLLAKAPCSIGILVDRG 644 (868)
Q Consensus 582 ~~~m~~dI~~~A~e~~adlIIlp~h~~~~~~g~~~~~~~~~r~vn~~Vl~~ApCsVgIlvdrg 644 (868)
.....+.|.++.++.+++.|++|...+ .+|.-.......|.+...+.++.+++|-..-+|+
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~--~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKN--MNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCC--BTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeec--CCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 457899999999999999999997643 3454322222346777777777789985544444
Done!