BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043954
(1045 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 122/251 (48%), Gaps = 35/251 (13%)
Query: 468 DVRYFVDTPPAMRKQG----------FNEKKLQLLHDITGAFRPGILTALMGVSGAGKTT 517
D++ V P KQG +N+ + +L DI + G A +G+SG GK+T
Sbjct: 323 DIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKST 382
Query: 518 LMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLR 577
L++++ + + G+I + G+ K F S + + I ++VK + L
Sbjct: 383 LINLIP--RFYDVTSGQILIDGHNI--KDFLTGSLRNQIGLVQQDNILFSDTVKENILLG 438
Query: 578 LPPEIDSETKARFVEEVIETIELDDIKDSLVGIP-------GQSG--LSTEQRKRLTIAV 628
P D EEV+E ++ + D ++ +P G+ G LS Q++RL+IA
Sbjct: 439 RPTATD--------EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 490
Query: 629 ELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLL 688
++NP I+ +DE TS LD + +I+ A+ +V+ RTT+ H+ S D++++
Sbjct: 491 IFLNNPPILILDEATSALDLESESIIQEAL-DVLSKDRTTLIVAHRLS--TITHADKIVV 547
Query: 689 MKAGGRIIYSG 699
++ G I+ +G
Sbjct: 548 IE-NGHIVETG 557
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 485 NEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP--K 542
+ K++Q+L + + G AL+G SG GK+T + ++ ++ + G + + G
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRT 456
Query: 543 VQKTFAR-ISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD 601
+ + R I G Q + T+ E++++ EI+ K + I ++L
Sbjct: 457 INVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLP 513
Query: 602 DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNV 661
D+LVG G + LS Q++R+ IA LV NP I+ +DE TS LD + A+V A+ +
Sbjct: 514 HQFDTLVGERG-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DK 571
Query: 662 VRTGRTTVCTIHQPSI----DVFEAFDELLLMKAG 692
R GRTT+ H+ S DV FD ++++ G
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 485 NEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP--K 542
+ K++Q+L + + G AL+G SG GK+T + ++ ++ + G + + G
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRT 456
Query: 543 VQKTFAR-ISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD 601
+ + R I G Q + T+ E++++ EI+ K + I ++L
Sbjct: 457 INVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLP 513
Query: 602 DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNV 661
D+LVG G + LS Q++R+ IA LV NP I+ +DE TS LD + A+V A+ +
Sbjct: 514 HQFDTLVGERG-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DK 571
Query: 662 VRTGRTTVCTIHQPSI----DVFEAFDELLLMKAG 692
R GRTT+ H+ S DV FD ++++ G
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 26/186 (13%)
Query: 502 GILTALMGVSGAGKTTLM-------DVLSGRKTGGIIQG-EIRVGGYPKVQKTFARISGY 553
G AL+G SG GK+T++ DVL G+ T I G ++R ++K A +S
Sbjct: 444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT---IDGVDVRDINLEFLRKNVAVVS-- 498
Query: 554 CEQTDIHSPQI---TVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGI 610
P + T+EE++ E+ + K E+ I+T L + ++LVG
Sbjct: 499 ------QEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKT--LPNGYNTLVGD 550
Query: 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVC 670
G + LS Q++R+ IA LV NP I+ +DE TS LDA + IV +A+ + GRTT+
Sbjct: 551 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTII 608
Query: 671 TIHQPS 676
H+ S
Sbjct: 609 IAHRLS 614
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 42/242 (17%)
Query: 450 SKISGMVLPFEQLTM----AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILT 505
SKI + L E+ + FK+VR+ P ++++L ++ + PG
Sbjct: 1059 SKIDSLSLAGEKKKLYGKVIFKNVRFAYPERP----------EIEILKGLSFSVEPGQTL 1108
Query: 506 ALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP----KVQKTFARISGYCEQTDIHS 561
AL+G SG GK+T++ +L + + GEI + G + T ++I+ ++ +
Sbjct: 1109 ALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF- 1165
Query: 562 PQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIP-------GQS 614
++ E++ + L P S T A +V E L +I + + +P G
Sbjct: 1166 -DCSIAENIIYG----LDPS--SVTMA----QVEEAARLANIHNFIAELPEGFETRVGDR 1214
Query: 615 G--LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTI 672
G LS Q++R+ IA LV NP I+ +DE TS LD + +V A+ + R GRT +
Sbjct: 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL-DRAREGRTCIVIA 1273
Query: 673 HQ 674
H+
Sbjct: 1274 HR 1275
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 33/219 (15%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L D+ F G + ++G +G+GKTTL+ +L+G GEI + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 551 SGYCEQTDIHSPQI---TVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSL 607
GY Q S QI TVEE V FS L + +SE + R +++V+E L
Sbjct: 83 VGYVFQN--PSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLE----------L 127
Query: 608 VGIPGQS-----GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV 662
VG+ G + LS Q++RL IA L + + +DEP S LD + + + ++++
Sbjct: 128 VGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK 187
Query: 663 RTGRTTVCTIHQPSIDVFEAFDEL--LLMKAGGRIIYSG 699
G+ + H+ E D++ +L + G I + G
Sbjct: 188 NEGKGIILVTHE-----LEYLDDMDFILHISNGTIDFCG 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIQGEIRVGGYPKVQKTFARI 550
DI G +G SG GK+TL+ +++G +T G + GE R+ P ++
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV--- 77
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGI 610
G Q+ P ++V E++ F L E + V +V E ++L + D
Sbjct: 78 -GMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR---- 129
Query: 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV--RTGRTT 668
LS QR+R+ I LV+ PS+ +DEP S LDA A + MR + + R GRT
Sbjct: 130 -KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTM 187
Query: 669 VCTIHQPSIDVFEAFDELLLMKAG 692
+ H ++ D+++++ AG
Sbjct: 188 IYVTHD-QVEAMTLADKIVVLDAG 210
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIQGEIRVGGYPKVQKTFARI 550
DI G +G SG GK+TL+ +++G +T G + GE R+ P ++
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV--- 77
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGI 610
G Q+ P ++V E++ F L E + V +V E ++L + D
Sbjct: 78 -GMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR---- 129
Query: 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV--RTGRTT 668
LS QR+R+ I LV+ PS+ +DEP S LDA A + MR + + R GRT
Sbjct: 130 -KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTM 187
Query: 669 VCTIHQPSIDVFEAFDELLLMKAG 692
+ H ++ D+++++ AG
Sbjct: 188 IYVTHD-QVEAMTLADKIVVLDAG 210
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 42/242 (17%)
Query: 449 ESKISGMVLPFEQLTMAFKDV--RYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTA 506
E + + LP + +++F++V RYF +T P + F + +PG L A
Sbjct: 327 EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNF-------------SVKPGSLVA 373
Query: 507 LMGVSGAGKTTLMDV---LSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQ 563
++G +G+GK+TLM++ L + G + E+ V K++ IS ++T + S
Sbjct: 374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-KLKDLRGHISAVPQETVLFSG- 431
Query: 564 ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIP---------GQS 614
T++E++K W R D E++E ++ I D ++ +P G
Sbjct: 432 -TIKENLK---WGREDATDD---------EIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478
Query: 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQ 674
S Q++RL+IA LV P ++ +D+ TS +D ++ +K + T + T
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKI 538
Query: 675 PS 676
P+
Sbjct: 539 PT 540
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 32/220 (14%)
Query: 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP--KV 543
+KK +L DIT +PG AL+G +G+GKTT++++L + + +G+I V G K+
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKI 422
Query: 544 QKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKA-----------RFVE 592
+++ R S D TV+E++K+ P D E K + +
Sbjct: 423 KRSSLRSSIGIVLQDTILFSTTVKENLKYGN----PGATDEEIKEAAKLTHSDHFIKHLP 478
Query: 593 EVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 652
E ET+ D+ +D LS QR+ L I ++NP I+ +DE TS +D +
Sbjct: 479 EGYETVLTDNGED----------LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEK 528
Query: 653 IVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692
+ A+ ++ G+T++ H+ ++ + D +++++ G
Sbjct: 529 SIQAAMWKLME-GKTSIIIAHR--LNTIKNADLIIVLRDG 565
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIQGEIRVGGYPKVQKTFARI 550
DI G +G SG GK+TL+ +++G +T G + GE R+ P ++
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV--- 77
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGI 610
G Q+ P ++V E++ F L E + V +V E ++L + D
Sbjct: 78 -GMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR---- 129
Query: 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV--RTGRTT 668
LS QR+R+ I LV+ PS+ +D+P S LDA A + MR + + R GRT
Sbjct: 130 -KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTM 187
Query: 669 VCTIHQPSIDVFEAFDELLLMKAG 692
+ H ++ D+++++ AG
Sbjct: 188 IYVTHD-QVEAMTLADKIVVLDAG 210
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 20/218 (9%)
Query: 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY------PK 542
L++L I R G + ++G SG+GK+T + L+ + +GEI + G
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 73
Query: 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAW-LRLPPEIDSETKARFVEEVIETIELD 601
+ K + ++ ++ P +TV ++ + +R P +E KA +E ++
Sbjct: 74 LNKVREEVGMVFQRFNLF-PHMTVLNNITLAPMKVRKWPREKAEAKA------MELLDKV 126
Query: 602 DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNV 661
+KD P LS Q +R+ IA L P I+ DEPTS LD V+ +K +
Sbjct: 127 GLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 184
Query: 662 VRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
G T V H+ E D +L M GG II G
Sbjct: 185 ANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 20/218 (9%)
Query: 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY------PK 542
L++L I R G + ++G SG+GK+T + L+ + +GEI + G
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 94
Query: 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAW-LRLPPEIDSETKARFVEEVIETIELD 601
+ K + ++ ++ P +TV ++ + +R P +E KA +E ++
Sbjct: 95 LNKVREEVGMVFQRFNLF-PHMTVLNNITLAPMKVRKWPREKAEAKA------MELLDKV 147
Query: 602 DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNV 661
+KD P LS Q +R+ IA L P I+ DEPTS LD V+ +K +
Sbjct: 148 GLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205
Query: 662 VRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
G T V H+ E D +L M GG II G
Sbjct: 206 ANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 15/198 (7%)
Query: 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIQGEIRVGGYPKVQKTFARISGYC 554
+ G L+G SG GKTT + +++G + G I G+ V P + + +
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 90
Query: 555 EQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614
Q+ P +TV E++ F ++ P+ + + + R+ E+++ EL L P Q
Sbjct: 91 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYPAQ- 142
Query: 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQ 674
LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + + + T +
Sbjct: 143 -LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 675 PSIDVFEAFDELLLMKAG 692
++ D + +M G
Sbjct: 202 DQVEAMTMGDRIAVMNRG 219
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 15/198 (7%)
Query: 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIQGEIRVGGYPKVQKTFARISGYC 554
+ G L+G SG GKTT + +++G + G I G+ V P + + +
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 89
Query: 555 EQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614
Q+ P +TV E++ F ++ P+ + + + R+ E+++ EL L P Q
Sbjct: 90 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYPAQ- 141
Query: 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQ 674
LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + + + T +
Sbjct: 142 -LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 675 PSIDVFEAFDELLLMKAG 692
++ D + +M G
Sbjct: 201 DQVEAMTMGDRIAVMNRG 218
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 19/215 (8%)
Query: 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPK--VQKTF 547
L I + G +TA++G +G GK+TL +G + + G I + + Y + + K
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 548 ARISGYCEQTDIHSPQITVEESVKFSAW-LRLPPEIDSETKARFVEEVIETIELDDIKDS 606
I + D +V + V F A ++LP + E + R V+ ++ ++ +KD
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP---EDEIRKR-VDNALKRTGIEHLKDK 139
Query: 607 LVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-G 665
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + + G
Sbjct: 140 ----PTHC-LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 666 RTTVCTIHQPSIDVFEAF-DELLLMKAGGRIIYSG 699
T + H ID+ + D + +MK GR+I G
Sbjct: 195 ITIIIATH--DIDIVPLYCDNVFVMKE-GRVILQG 226
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 599 ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658
EL + +++VG G +GLS QR+R+ IA LV+NP I+ DE TS LD + ++MR +
Sbjct: 124 ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182
Query: 659 KNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIE 710
+ + GRT + H+ + + D +++M+ G+I+ G+H L E
Sbjct: 183 HKICK-GRTVIIIAHR--LSTVKNADRIIVMEK-GKIVEQ---GKHKELLSE 227
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 599 ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658
EL + +++VG G +GLS QR+R+ IA LV+NP I+ DE TS LD + ++MR +
Sbjct: 126 ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 184
Query: 659 KNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIE 710
+ + GRT + H+ + + D +++M+ G+I+ G+H L E
Sbjct: 185 HKICK-GRTVIIIAHR--LSTVKNADRIIVMEK-GKIVEQ---GKHKELLSE 229
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 599 ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658
EL + +++VG G +GLS QR+R+ IA LV+NP I+ DE TS LD + ++MR +
Sbjct: 126 ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 184
Query: 659 KNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIE 710
+ + GRT + H+ + + D +++M+ G+I+ G+H L E
Sbjct: 185 HKICK-GRTVIIIAHR--LSTVKNADRIIVMEK-GKIVEQ---GKHKELLSE 229
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 599 ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658
EL + +++VG G +GLS QR+R+ IA LV+NP I+ DE TS LD + ++MR +
Sbjct: 130 ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 659 KNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIE 710
+ + GRT + H+ + + D +++M+ G+I+ G+H L E
Sbjct: 189 HKICK-GRTVIIIAHR--LSTVKNADRIIVMEK-GKIVEQ---GKHKELLSE 233
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIQGEIRVGGYPKVQKTFA 548
L++I + G AL+G SG+GK+TL+ ++G +G I E V P +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV- 77
Query: 549 RISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLV 608
G Q P +TV +++ F LR P + + K R EV + + +D + L
Sbjct: 78 ---GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR---EVAKMLHIDKL---LN 128
Query: 609 GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRT 667
P Q LS Q++R+ IA LV P ++ +DEP S LDA V +K + + G T
Sbjct: 129 RYPWQ--LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGIT 186
Query: 668 TVCTIHQPSIDVFEAFDELLLMKAG 692
TV H + + D + +++ G
Sbjct: 187 TVYVTHDQA-EALAMADRIAVIREG 210
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 16/215 (7%)
Query: 484 FNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIQGEIRVGGY 540
F + K+ L ++ G ++G SGAGKTT M +++G TG + + V
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 541 PK-VQKTFARISGYCEQTDIHSPQITVEESVKFS-AWLRLPPEIDSETKARFVEEVIETI 598
K + R G QT P +T E++ F +++ E E + R VEEV + +
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKIL 128
Query: 599 ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658
DI L P + LS Q++R+ +A LV +PS++ +DEP S LDAR V
Sbjct: 129 ---DIHHVLNHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 659 KNV-VRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692
K V R G T + H P+ D+F D + ++ G
Sbjct: 184 KEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 11/213 (5%)
Query: 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGIIQGEIRVGGYPKVQ 544
+ +Q L++++ G + ++G SGAGK+TL+ ++ R T +G + V G
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 71
Query: 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIK 604
+ + ++ Q + + S + LP E+D+ K V E + L +
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 131
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D P S LS Q++R+ IA L SNP ++ DE TS LD ++ +K++ R
Sbjct: 132 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 665 -GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696
G T + H+ +DV + + + + + G +I
Sbjct: 190 LGLTILLITHE--MDVVKRICDCVAVISNGELI 220
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 21/218 (9%)
Query: 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDV---LSGRKTGGIIQGEIRVGGYPK 542
E+ + L ++ + G ++MG SG+GK+T++++ L G + I+
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 543 VQKTFARIS--GYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL 600
+ T R G+ Q P +T E+V+ + + E + + E ++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 601 DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKN 660
++ + P Q LS Q++R+ IA L +NP II D+PT LD++ +M+ +K
Sbjct: 135 EERFAN--HKPNQ--LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 661 V-VRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+ G+T V H ++ F G RIIY
Sbjct: 191 LNEEDGKTVVVVTHDINVARF-----------GERIIY 217
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 8/202 (3%)
Query: 502 GILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKT---FARISGYCE-QT 557
G + ALMG +GAGK+TL +L+G + +GEI + G ++ + AR + Q
Sbjct: 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQY 88
Query: 558 DIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617
+ P +T+ ++ + +L E+ A F +V + +EL D +S + G S
Sbjct: 89 PVEVPGVTIANFLRLALQAKLGREVGV---AEFWTKVKKALELLDWDESYLSRYLNEGFS 145
Query: 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSI 677
++KR I LV P+ +DE SGLD A +V R V + + H I
Sbjct: 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI 205
Query: 678 DVFEAFDELLLMKAGGRIIYSG 699
+ D++ +M GR++ +G
Sbjct: 206 LNYIQPDKVHVM-MDGRVVATG 226
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 16/215 (7%)
Query: 484 FNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIQGEIRVGGY 540
F + K+ L ++ G ++G SGAGKTT M +++G TG + + V
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 541 PK-VQKTFARISGYCEQTDIHSPQITVEESVKFS-AWLRLPPEIDSETKARFVEEVIETI 598
K + R G QT P +T E++ F +++ E E + R VEEV + +
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKIL 128
Query: 599 ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658
DI L P + LS Q++R+ +A LV +PS++ +DEP S LDAR V
Sbjct: 129 ---DIHHVLNHFPRE--LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 659 KNV-VRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692
K V R G T + H P+ D+F D + ++ G
Sbjct: 184 KEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 16/202 (7%)
Query: 502 GILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK----TFARISGYCEQT 557
G AL+G +G+GK+T+ +L +G+I++GG V K + I G Q
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGG-KNVNKYNRNSIRSIIGIVPQD 101
Query: 558 DIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617
I + T++ ++ + E+ TK+ + + IE L D++VG G LS
Sbjct: 102 TILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIEA--LPKKWDTIVGNKGMK-LS 157
Query: 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSI 677
+R+R+ IA L+ +P I+ DE TS LD++ + +AV++ +R RT + H+ S
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST 216
Query: 678 DVFEAFDELLLMKAGGRIIYSG 699
+ A +LL K G+I+ G
Sbjct: 217 -ISSAESIILLNK--GKIVEKG 235
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 15/193 (7%)
Query: 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP----KVQK 545
Q+L DI+ +P + A G SG GK+T+ +L + GEI + G P ++
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNISLEN 73
Query: 546 TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKD 605
++I + + I + T+ E++ + L + E + ++ ++++ D
Sbjct: 74 WRSQIGFVSQDSAIMAG--TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENMPD 127
Query: 606 SLVGIPGQSG--LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR 663
L G+ G +S QR+RL IA + NP I+ +DE T+ LD+ + ++V +A+ ++++
Sbjct: 128 QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK 187
Query: 664 TGRTTVCTIHQPS 676
GRTT+ H+ S
Sbjct: 188 -GRTTLVIAHRLS 199
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 599 ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658
EL + +++VG G +GLS QR+R+ IA LV+NP I+ D+ TS LD + ++MR +
Sbjct: 130 ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM 188
Query: 659 KNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIE 710
+ + GRT + H+ + + D +++M+ G+I+ G+H L E
Sbjct: 189 HKICK-GRTVIIIAHR--LSTVKNADRIIVMEK-GKIVEQ---GKHKELLSE 233
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 21/218 (9%)
Query: 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDV---LSGRKTGGIIQGEIRVGGYPK 542
E+ + L ++ + G ++MG SG+GK+T++++ L G + I+
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 543 VQKTFARIS--GYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL 600
+ T R G+ Q P +T E+V+ + + E + + E ++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 601 DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKN 660
++ + P Q LS Q++R+ IA L +NP II D+PT LD++ +M+ +K
Sbjct: 135 EERFAN--HKPNQ--LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 661 V-VRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+ G+T V H ++ F G RIIY
Sbjct: 191 LNEEDGKTVVVVTHDINVARF-----------GERIIY 217
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 102/204 (50%), Gaps = 11/204 (5%)
Query: 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARIS 551
L +I G AL+G SG+GK+T+ +++ + I +GEI + G+ + T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 552 GYCE--QTDIHSPQITVEESVKFSAWLRLPPE-IDSETKARFVEEVIETIELDDIKDSLV 608
++H TV ++ ++ + E I+ + + + I ++D+ D+++
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVI 474
Query: 609 GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTT 668
G G LS QR+R+ IA L+ + I+ +DE TS LD + + A+ ++ RT+
Sbjct: 475 GENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTS 532
Query: 669 VCTIHQPSIDVFEAFDELLLMKAG 692
+ H+ S E DE+++++ G
Sbjct: 533 LVIAHRLS--TIEKADEIVVVEDG 554
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 11/213 (5%)
Query: 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGIIQGEIRVGGYPKVQ 544
+ +Q L++++ G + ++G SGAGK+TL+ ++ R T +G + V G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIK 604
+ + ++ Q + + S + LP E+D+ K V E + L +
Sbjct: 95 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D P S LS Q++R+ IA L SNP ++ D+ TS LD ++ +K++ R
Sbjct: 155 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 665 -GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696
G T + H+ +DV + + + + + G +I
Sbjct: 213 LGLTILLITHE--MDVVKRICDCVAVISNGELI 243
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 110/224 (49%), Gaps = 14/224 (6%)
Query: 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKT 546
+++ L +I G AL+G SG+GK+T+ +++ + I +G I + G+ + T
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYT 411
Query: 547 FARISGYCE--QTDIHSPQITVEESVKFSAWLRLPPE-IDSETKARFVEEVIETIELDDI 603
A + ++H TV ++ ++ E I+ + + + I ++D+
Sbjct: 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN--KMDNG 469
Query: 604 KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR 663
D+++G G LS QR+R+ IA L+ + I+ +DE TS LD + + A+ ++
Sbjct: 470 LDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQ 527
Query: 664 TGRTTVCTIHQPSIDVFEAFDELLLMKAG---GRIIYSGMLGRH 704
RT++ H+ S E DE+++++ G R +S +L +H
Sbjct: 528 KNRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSELLAQH 569
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 599 ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658
EL + +++VG G +GLS QR+R+ IA LV+NP I+ DE TS LD + ++MR +
Sbjct: 124 ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182
Query: 659 KNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIE 710
+ + GRT + I + + D +++M+ G+I+ G+H L E
Sbjct: 183 HKICK-GRTVI--IIAARLSTVKNADRIIVMEK-GKIVEQ---GKHKELLSE 227
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 599 ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658
EL + +++VG G +GLS QR+R+ IA LV+NP I+ DE TS LD + ++MR +
Sbjct: 130 ELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 659 KNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIE 710
+ + GRT + I + + D +++M+ G+I+ G+H L E
Sbjct: 189 HKICK-GRTVI--IIAARLSTVKNADRIIVMEK-GKIVEQ---GKHKELLSE 233
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 23/222 (10%)
Query: 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMD 520
Q + FK+V + P ++ + D + + G +TAL+G SG+GK+T++
Sbjct: 339 QGALEFKNVHFAYPARP----------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLS 388
Query: 521 VLSGRKTGGIIQGEIRVGGYPKVQKT----FARISGYCEQTDIHSPQITVEESVKFSAWL 576
+L + G I + G+ Q ++I ++ + S ++ E++ + A
Sbjct: 389 LL--LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS--CSIAENIAYGA-- 442
Query: 577 RLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG--LSTEQRKRLTIAVELVSNP 634
P + +E R E + + + G+ G LS Q++R+ IA L+ NP
Sbjct: 443 DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP 502
Query: 635 SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676
I+ +DE TS LDA +V A+ ++ GRT + H+ S
Sbjct: 503 KILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHRLS 543
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 23/222 (10%)
Query: 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMD 520
Q + FK+V + P ++ + D + + G +TAL+G SG+GK+T++
Sbjct: 370 QGALEFKNVHFAYPARP----------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLS 419
Query: 521 VLSGRKTGGIIQGEIRVGGYPKVQKT----FARISGYCEQTDIHSPQITVEESVKFSAWL 576
+L + G I + G+ Q ++I ++ + S ++ E++ + A
Sbjct: 420 LL--LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS--CSIAENIAYGA-- 473
Query: 577 RLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG--LSTEQRKRLTIAVELVSNP 634
P + +E R E + + + G+ G LS Q++R+ IA L+ NP
Sbjct: 474 DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP 533
Query: 635 SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676
I+ +DE TS LDA +V A+ ++ GRT + H S
Sbjct: 534 KILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHHLS 574
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 11/213 (5%)
Query: 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGIIQGEIRVGGYPKVQ 544
+ +Q L++++ G + ++G SGAGK+TL+ ++ R T +G + V G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIK 604
+ + ++ Q + S + LP E+D+ K V E + L +
Sbjct: 95 LSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D P S LS Q++R+ IA L SNP ++ D+ TS LD ++ +K++ R
Sbjct: 155 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 665 -GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696
G T + H+ DV + + + + + G +I
Sbjct: 213 LGLTILLITHE--XDVVKRICDCVAVISNGELI 243
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 16/191 (8%)
Query: 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIQGEIRVGGYPKVQ 544
K++ + ++ + G AL+G SG GKTT + +L+G +G I ++ V P
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP--- 71
Query: 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIK 604
R G Q P +TV E++ F R I + + V E+ + +D++
Sbjct: 72 -PKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLL 127
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D P Q LS Q++R+ +A LV P ++ DEP S LDA I+ +K++ +
Sbjct: 128 DRK---PTQ--LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182
Query: 665 -GRTTVCTIHQ 674
G T+V H
Sbjct: 183 LGITSVYVTHD 193
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 27/205 (13%)
Query: 500 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGG-----------YPKVQKTFA 548
+ G L+G SG GKTT + +++G + +G+I +G P + A
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPS--RGQIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 549 RISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLV 608
+ Q+ P +TV +++ F LR P + + + R V E++ EL + K
Sbjct: 85 MVF----QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK---- 136
Query: 609 GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRT 667
P + LS QR+R+ + +V P + MDEP S LDA+ + +K + R G T
Sbjct: 137 --PRE--LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 668 TVCTIHQPSIDVFEAFDELLLMKAG 692
T+ H ++ D + +M G
Sbjct: 193 TIYVTHD-QVEAMTMGDRIAVMNRG 216
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 105/215 (48%), Gaps = 21/215 (9%)
Query: 502 GILTALMGVSGAGKTTLMDVLS---GRKTGGI-IQG-EIRVGGYPKVQKTFARISGYCEQ 556
G AL+G SG+GK+T+ ++ + +G I + G ++R +++ FA +S
Sbjct: 369 GKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS----- 423
Query: 557 TDIHSPQITVEESVKFSAWLRLPPE-IDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615
++H T+ ++ ++A E I+ + E IE + D+++G G S
Sbjct: 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQG--LDTVIGENGTS- 480
Query: 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQP 675
LS QR+R+ IA L+ + ++ +DE TS LD + + A+ + + +T + H+
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN-KTVLVIAHRL 539
Query: 676 SIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIE 710
S E DE+L++ G II GRH+ L +
Sbjct: 540 S--TIEQADEILVVDE-GEIIER---GRHADLLAQ 568
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 18/209 (8%)
Query: 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFAR 549
+ L D++ PG AL+G SGAGK+T++ +L + I G IR+ G Q T A
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQAS 125
Query: 550 ISGYCEQTDIHSPQITV------EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI 603
+ + PQ TV +++++ E+++ +A + + I + +
Sbjct: 126 LRSHIGVV----PQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI--MAFPEG 179
Query: 604 KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR 663
+ VG G LS +++R+ IA ++ P II +DE TS LD + ++ V
Sbjct: 180 YRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC- 237
Query: 664 TGRTTVCTIHQPSIDVFEAFDELLLMKAG 692
RTT+ H+ S V A D++L++K G
Sbjct: 238 ANRTTIVVAHRLST-VVNA-DQILVIKDG 264
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 21/218 (9%)
Query: 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDV---LSGRKTGGIIQGEIRVGGYPK 542
E+ + L ++ + G ++ G SG+GK+T +++ L G + I+
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 543 VQKTFARIS--GYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL 600
+ T R G+ Q P +T E+V+ + E + + E ++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL 134
Query: 601 DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKN 660
++ + P Q LS Q++R+ IA L +NP II DEPT LD++ + + +K
Sbjct: 135 EERFAN--HKPNQ--LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKK 190
Query: 661 V-VRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+ G+T V H ++ F G RIIY
Sbjct: 191 LNEEDGKTVVVVTHDINVARF-----------GERIIY 217
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 42/258 (16%)
Query: 450 SKISGMVLPFEQLTMA-FKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALM 508
S +SG + P + F+DV + N +Q+L +T PG +TAL+
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYP----------NHPNVQVLQGLTFTLYPGKVTALV 51
Query: 509 GVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566
G +G+GK+T+ +L + TG G++ + G P VQ + +H+ V
Sbjct: 52 GPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---------YDHHYLHTQVAAV 98
Query: 567 -EESVKFSAWLRLPPEID-SETKARFVEEVIETIELDDIKDSLVGIP-------GQSG-- 615
+E + F R I T+ +EE+ D + G P G++G
Sbjct: 99 GQEPLLFGRSFR--ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ 156
Query: 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQ 674
LS QR+ + +A L+ P ++ +D+ TS LDA V R + RT + HQ
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ 216
Query: 675 PSIDVFEAFDELLLMKAG 692
+ + E +L +K G
Sbjct: 217 --LSLAERAHHILFLKEG 232
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 22/215 (10%)
Query: 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARIS 551
L ++G R G + L+G +GAGK+TL+ ++G +G +G I+ G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 552 GYCEQTDIHSPQITVEESVKFSA--WLRLPPEIDSETKARFVEEVIETIELDDIKDSLVG 609
+H ++ +++ F+ W L +T+ + +V + LD D L
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLGR 122
Query: 610 IPGQSGLSTEQRKRLTIAVELVS---NPS--IIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
Q QR RL V ++ NP+ ++ +D+P + LD + + + + + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQ 182
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
G V + H + + A LL GG+++ SG
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 507 LMGVSGAGKTTLMDVLSGRKTGGIIQ---GEIRVGGYPKVQKTFARIS-GYCEQTDIHSP 562
L+G +GAGK+ +++++G I++ GE+R+ G R G+ Q P
Sbjct: 29 LLGPTGAGKSVFLELIAG-----IVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFP 83
Query: 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622
++V ++ + LR ++ + + R + E + L D K P + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRK------PAR--LSGGERQ 133
Query: 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEA 682
R+ +A LV P ++ +DEP S +D + ++M ++ V R + + I+
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193
Query: 683 FDELLLMKAGGRIIYSGMLGRHSSKLIEYFQGISG 717
DE+ +M GRI+ G KL E F +G
Sbjct: 194 ADEVAVM-LNGRIVEKG-------KLKELFSAKNG 220
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 22/215 (10%)
Query: 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARIS 551
L ++G R G + L+G +GAGK+TL+ +G +G +G I+ G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 552 GYCEQTDIHSPQITVEESVKFSA--WLRLPPEIDSETKARFVEEVIETIELDDIKDSLVG 609
+H ++ +++ F+ W L +T+ + +V + LD D L
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLGR 122
Query: 610 IPGQSGLSTEQRKRLTIAVELVS---NPS--IIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
Q QR RL V ++ NP+ ++ +DEP + LD + + + + + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQ 182
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
G V + H + + A LL GG+ + SG
Sbjct: 183 GLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 28/249 (11%)
Query: 453 SGMVLPFE-QLTMAFKDVRY-FVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGV 510
SG++ P + + F+DV + + + P + QG +T RPG +TAL+G
Sbjct: 3 SGLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQG-----------LTFTLRPGEVTALVGP 51
Query: 511 SGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQI---T 565
+G+GK+T+ +L + TG G++ + G P Q + PQ+ +
Sbjct: 52 NGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQYEHRYLHRQVAAVG-QEPQVFGRS 106
Query: 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIE-LDDIKDSLVGIPGQSGLSTEQRKRL 624
++E++ + L P ++ T A I L D+ V G S LS QR+ +
Sbjct: 107 LQENIAYG--LTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAG-SQLSGGQRQAV 163
Query: 625 TIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFD 684
+A L+ P ++ +D+ TS LDA + V + + +V I Q + + E D
Sbjct: 164 ALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ-HLSLVEQAD 222
Query: 685 ELLLMKAGG 693
+L ++ G
Sbjct: 223 HILFLEGGA 231
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 24/194 (12%)
Query: 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIQ--GEIRVGGYPKV 543
K ++L I+ G + L+G +GAGKTT + ++S + + GI+ G+ V +V
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86
Query: 544 QKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL--- 600
+K IS E+ + +E +LR + + + E V E+
Sbjct: 87 RKL---ISYLPEEAGAYRNMQGIE-------YLRFVAGFYASSSSEIEEMVERATEIAGL 136
Query: 601 -DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVK 659
+ IKD + S S ++L IA L+ NP + +DEPTSGLD A V + +K
Sbjct: 137 GEKIKDRV------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK 190
Query: 660 NVVRTGRTTVCTIH 673
+ G T + + H
Sbjct: 191 QASQEGLTILVSSH 204
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 22/215 (10%)
Query: 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARIS 551
L ++G R G + L+G +GAGK+TL+ ++G +G +G I+ G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 552 GYCEQTDIHSPQITVEESVKFSA--WLRLPPEIDSETKARFVEEVIETIELDDIKDSLVG 609
+H ++ +++ F+ W L +T+ + +V + LD D L
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLGR 122
Query: 610 IPGQSGLSTEQRKRLTIAVELVS---NPS--IIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
Q QR RL V ++ NP+ ++ +D+P LD + + + + + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQ 182
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
G V + H + + A LL GG+++ SG
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 22/215 (10%)
Query: 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARIS 551
L ++G R G + L+G +GAGK+TL+ +G +G +G I+ G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 552 GYCEQTDIHSPQITVEESVKFSA--WLRLPPEIDSETKARFVEEVIETIELDDIKDSLVG 609
+H ++ +++ F+ W L +T+ + +V + LD D L
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLGR 122
Query: 610 IPGQSGLSTEQRKRLTIAVELVS---NPS--IIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
Q QR RL V ++ NP+ ++ +DEP + LD + + + + + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQ 182
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
G V + H + + A LL GG+ + SG
Sbjct: 183 GLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 29/205 (14%)
Query: 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIQGEIRVGGYPKVQKTF 547
QL+ D G + G + ++G +G GKTT +L G T G + E ++ Y K Q+ F
Sbjct: 283 QLVVD-NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 548 ARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSL 607
G +Q ++ + +++ S+W F EEV + + L + +S
Sbjct: 341 PNYDGTVQQYLENASK----DALSTSSW--------------FFEEVTKRLNLHRLLESN 382
Query: 608 VGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRT 667
V + LS + ++L IA L + +D+P+S LD IV +A+K V R +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 668 TVCTI-HQPSIDVFEAFDELLLMKA 691
I H SI + A D +++ K
Sbjct: 438 VTFIIDHDLSIHDYIA-DRIIVFKG 461
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 500 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDI 559
+ + ++G +G GKTT++ +L+G +VG +V K F Y ++
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG-KDEVLKRFRGKEIYNYFKEL 81
Query: 560 HSPQITVEESVKF----SAWLR-----LPPEIDSETKARFVEEVIETIELDDIKDSLVGI 610
+S ++ + +++ S +L+ + +ID K +EV E + + ++ + I
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKDANI 138
Query: 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
GL +RL +A L+ + D+P+S LD R + +A++ +++
Sbjct: 139 LSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN 187
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 108/257 (42%), Gaps = 40/257 (15%)
Query: 450 SKISGMVLPFEQLTMA-FKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALM 508
S +SG + P + F+DV + N +Q+L +T PG +TAL+
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYP----------NHPNVQVLQGLTFTLYPGKVTALV 51
Query: 509 GVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566
G +G+GK+T+ +L + TG G++ + G P VQ + +H+ V
Sbjct: 52 GPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---------YDHHYLHTQVAAV 98
Query: 567 -EESVKFSAWLRLPPEID-SETKARFVEEVIETIELDDIKDSLVGIP-------GQSG-- 615
+E + F R I T+ +EE+ D + G P G++G
Sbjct: 99 GQEPLLFGRSFR--ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ 156
Query: 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQP 675
LS QR+ + +A L+ P ++ +D TS LDA V R + TV I Q
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ- 215
Query: 676 SIDVFEAFDELLLMKAG 692
+ + E +L +K G
Sbjct: 216 QLSLAERAHHILFLKEG 232
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 500 RPGILTALMGVSGAGKTTLMDVLSGRKTGGII------QGEIRVGGYPKVQKTFARISGY 553
+ G + ++G +G GK+T + +L+G+ + G IR ++Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 554 CEQTDIHSPQIT--VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIP 611
E + PQ + ++VK + L + D K +EEV++ +EL+++ + +
Sbjct: 104 GEIRPVVKPQYVDLIPKAVK-GKVIELLKKADETGK---LEEVVKALELENVLEREI--- 156
Query: 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCT 671
LS + +R+ IA L+ N + F DEP+S LD R RA++ + G++ +
Sbjct: 157 --QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 672 IHQPSI 677
H ++
Sbjct: 215 EHDLAV 220
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 83/197 (42%), Gaps = 28/197 (14%)
Query: 497 GAFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFARISGYC 554
G + G + ++G +G GKTT + L+G T G I+ ++ V P+ K + Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 555 EQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614
+ I + ++ S + + E+++ + + D+ D V +
Sbjct: 367 LLSKIDASKLN-------SNFYKT--------------ELLKPLGIIDLYDREV-----N 400
Query: 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQ 674
LS + +R+ IA L+ + I +DEP++ LD V RA++++ T +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 675 PSIDVFEAFDELLLMKA 691
+ + D L + +
Sbjct: 461 DVLXIDYVSDRLXVFEG 477
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 499 FRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIQ-GEIRVGGYPKVQKTFARISGYCE 555
R G + L+G SG+GKTT++ +++G R T G + G RV P ++ G
Sbjct: 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV----GLVF 93
Query: 556 QTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615
Q +TV ++V F + P+ + + + R E++ + L+ + P +
Sbjct: 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVR---ELLRFMRLESYANRF---PHE-- 145
Query: 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-----GRTTVC 670
LS Q++R+ +A L P ++ DEP + +D + + R ++ VR G T+V
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ----IRRELRTFVRQVHDEMGVTSVF 201
Query: 671 TIHQPSIDVFEAFDELLLMKAG 692
H + E D +L++ G
Sbjct: 202 VTHDQE-EALEVADRVLVLHEG 222
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 40/257 (15%)
Query: 450 SKISGMVLPFEQLTMA-FKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALM 508
S +SG + P + F+DV + N +Q+L +T PG +TAL+
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYP----------NHPNVQVLQGLTFTLYPGKVTALV 51
Query: 509 GVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566
G +G+GK+T+ +L + TG G++ + G P VQ + +H+ V
Sbjct: 52 GPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---------YDHHYLHTQVAAV 98
Query: 567 -EESVKFSAWLRLPPEID-SETKARFVEEVIETIELDDIKDSLVGIP-------GQSG-- 615
+E + F R I T+ +EE+ D + G P G++G
Sbjct: 99 GQEPLLFGRSFR--ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ 156
Query: 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQP 675
L+ QR+ + +A L+ P ++ +D TS LDA V R + TV I Q
Sbjct: 157 LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ- 215
Query: 676 SIDVFEAFDELLLMKAG 692
+ + E +L +K G
Sbjct: 216 QLSLAERAHHILFLKEG 232
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 16/190 (8%)
Query: 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFA- 548
+ D++ + G L+G SG GKTT + ++G T G I E + P+ + F
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPE-KGVFVP 80
Query: 549 ---RISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKD 605
R Q+ P TV +++ F LR P+ + + + R V E + EL + K
Sbjct: 81 PKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRK- 139
Query: 606 SLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT- 664
P + LS QR+R+ + ++ P + DEP S LDA+ +K + R
Sbjct: 140 -----PRE--LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL 192
Query: 665 GRTTVCTIHQ 674
G TT+ H
Sbjct: 193 GVTTIYVTHD 202
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 17/190 (8%)
Query: 502 GILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHS 561
G + A++G +G GK+TL+D+L G IQG+I V Y + G+ Q S
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIEV--YQSI--------GFVPQF-FSS 77
Query: 562 PQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621
P SV + I++ K + + + LD + + + + LS QR
Sbjct: 78 P---FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQR 134
Query: 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVC-TIHQPSIDVF 680
+ + IA + S +I +DEPTS LD IV+ + ++ ++ TV T HQP+ V
Sbjct: 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA 194
Query: 681 EAFDELLLMK 690
A LLL K
Sbjct: 195 IANKTLLLNK 204
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 13/190 (6%)
Query: 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLS--GRKTGG--IIQG-EIRVGGYPKVQ 544
++L I+ + + G +++G SG+GK+TL+ +L T G ++G E+ ++
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIK 604
R G+ Q P++T E+V P+ +++ + ++ + +
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL------GLG 131
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D L P + LS +++R+ IA L + P ++F DEPT LD+ VM +
Sbjct: 132 DKLSRKPYE--LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 665 GRTTVCTIHQ 674
G + V H+
Sbjct: 190 GTSIVMVTHE 199
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQ 674
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 33/231 (14%)
Query: 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTF 547
+ + L ++ + G +T ++G +G+GK+TL++V++G +G + K
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 548 ARISGYCEQTDIHSPQ----ITVEE---------------SVKFSAWLRLPPEIDSETKA 588
A + Y +PQ +TV E S+ + W+ P E + KA
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI--PKEEEMVEKA 134
Query: 589 RFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648
+++E ++L + D G LS Q K + I L++NP +I MDEP +G+
Sbjct: 135 F---KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 649 RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
A + V + G T + H+ I V D L +M G+II G
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVM-FNGQIIAEG 235
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIQGEIRVGGYPK 542
EKK L +++ G + G +G+GK+TL+ +++G +G ++ R GY +
Sbjct: 21 EKKA--LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-E 77
Query: 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD 602
+++ Y E V + V F A P+ D + E + ++ D
Sbjct: 78 IRRNIGIAFQYPEDQFFAE---RVFDEVAF-AVKNFYPDRDPVPLVKKAMEFV-GLDFDS 132
Query: 603 IKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV 662
KD + LS +++R+ IA +V P I+ +DEP GLD ++R V+
Sbjct: 133 FKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 187
Query: 663 RTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695
G+T + H V D +++++ G ++
Sbjct: 188 TLGKTVILISHDIET-VINHVDRVVVLEKGKKV 219
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIQGEIRVGGYPK 542
EKK L +++ G + G +G+GK+TL+ +++G +G ++ R GY +
Sbjct: 19 EKKA--LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-E 75
Query: 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD 602
+++ Y E V + V F A P+ D + E + ++ D
Sbjct: 76 IRRNIGIAFQYPEDQFFAE---RVFDEVAF-AVKNFYPDRDPVPLVKKAMEFV-GLDFDS 130
Query: 603 IKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV 662
KD + LS +++R+ IA +V P I+ +DEP GLD ++R V+
Sbjct: 131 FKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 663 RTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695
G+T + H V D +++++ G ++
Sbjct: 186 TLGKTVILISHDIET-VINHVDRVVVLEKGKKV 217
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 33/217 (15%)
Query: 502 GILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHS 561
G +T ++G +G+GK+TL++V++G +G + K A + Y +
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELYHYGIVRTFQT 90
Query: 562 PQ----ITVEE---------------SVKFSAWLRLPPEIDSETKARFVEEVIETIELDD 602
PQ +TV E S+ + W+ P E + KA +++E ++L
Sbjct: 91 PQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI--PKEEEMVEKAF---KILEFLKLSH 145
Query: 603 IKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV 662
+ D G LS Q K + I L++NP +I MDEP +G+ A + V +
Sbjct: 146 LYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 663 RTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
G T + H+ I V D L +M G+II G
Sbjct: 201 AKGITFLIIEHRLDI-VLNYIDHLYVM-FNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 33/231 (14%)
Query: 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTF 547
+ + L ++ + G +T ++G +G+GK+TL++V++G +G + K
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 548 ARISGYCEQTDIHSPQ----ITVEE---------------SVKFSAWLRLPPEIDSETKA 588
A + Y +PQ +TV E S+ + W+ P E + KA
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI--PKEEEMVEKA 134
Query: 589 RFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648
+++E ++L + D G LS Q K + I L++NP +I MD+P +G+
Sbjct: 135 F---KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAP 186
Query: 649 RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
A + V + G T + H+ I V D L +M G+II G
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVM-FNGQIIAEG 235
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 36/214 (16%)
Query: 497 GAFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFARISGYC 554
G R G + ++G +G GKTT + +L+G T G ++ ++ V P+ K + Y
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436
Query: 555 EQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614
+ I S ++ S + + E+++ + + D+ D V
Sbjct: 437 LLSKIDSSKLN-------SNF--------------YKTELLKPLGIIDLYDRNV-----E 470
Query: 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQ 674
LS + +R+ IA L+ + I +DEP++ LD V RA+++++ T +
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Query: 675 PSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKL 708
+ + D L I++ G GRH L
Sbjct: 531 DVLMIDYVSDRL--------IVFEGEPGRHGRAL 556
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 18/186 (9%)
Query: 500 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGE------IRVGGYPKVQKTFARISGY 553
+ G++ ++G +G GKTT + +L+G+ + + IR ++Q F R+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN- 173
Query: 554 CEQTDIHSPQIT--VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIP 611
E + PQ + ++VK L ++D K F E V E + + L
Sbjct: 174 GEIRPVVKPQYVDLLPKAVKGKVR-ELLKKVDEVGK--FEEVVKELELENVLDREL---- 226
Query: 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCT 671
LS + +R+ IA L+ F DEP+S LD R V R ++ + G+ +
Sbjct: 227 --HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 672 IHQPSI 677
H ++
Sbjct: 285 EHDLAV 290
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L IT G + G +G GKTTL+ +S ++GEI G P + K +I
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP-ITKVKGKI 80
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGI 610
E+ I +I+VE+ +K A L + + + +E++E+ D+K L
Sbjct: 81 FFLPEEI-IVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKKL--- 131
Query: 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR 663
LS +R+ +A L+ N I +D+P +D + V++++ +++
Sbjct: 132 ---GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK 181
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 36/214 (16%)
Query: 497 GAFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFARISGYC 554
G R G + ++G +G GKTT + +L+G T G ++ ++ V P+ K + Y
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 422
Query: 555 EQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614
+ I S ++ S + + E+++ + + D+ D V
Sbjct: 423 LLSKIDSSKLN-------SNF--------------YKTELLKPLGIIDLYDRNV-----E 456
Query: 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQ 674
LS + +R+ IA L+ + I +DEP++ LD V RA+++++ T +
Sbjct: 457 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Query: 675 PSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKL 708
+ + D L I++ G GRH L
Sbjct: 517 DVLMIDYVSDRL--------IVFEGEPGRHGRAL 542
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQP 675
LS + +R+ IA L+ F DEP+S LD R V R ++ + G+ + H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 676 SI 677
++
Sbjct: 275 AV 276
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
Query: 502 GILTALMGVSGAGKTTLMDVLSG---RKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTD 558
G + L+G +GAGKTT + ++G + G II + P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 559 IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618
I P++TV E++ A+ R D E R +E + +K+ L + G LS
Sbjct: 92 IF-PELTVYENLXXGAYNRK----DKEGIKRDLEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSI 677
+++ L I L S P ++ DEP+ GL + V ++ + + G TT+ + Q ++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEG-TTILLVEQNAL 200
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Query: 501 PGILTALMGVSGAGKTTLMDVLSGRK----TGGIIQ--GEIRVGGYPKVQKTFARISGYC 554
PG + A+MG +G+GK+TL L+GR+ TGG ++ G+ + P+ + +
Sbjct: 45 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQ 104
Query: 555 EQTDIH--SPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDIKDSLVGIP 611
+I S Q ++ ++ R +D +EE I +++ +D+ V +
Sbjct: 105 YPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV- 163
Query: 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTT--V 669
G S ++KR I V P + +DE SGLD A +V V N +R G+ + +
Sbjct: 164 ---GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV-NSLRDGKRSFII 219
Query: 670 CTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
T +Q +D + +L + GRI+ SG
Sbjct: 220 VTHYQRILDYIKPDYVHVLYQ--GRIVKSG 247
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Query: 501 PGILTALMGVSGAGKTTLMDVLSGRK----TGGIIQ--GEIRVGGYPKVQKTFARISGYC 554
PG + A+MG +G+GK+TL L+GR+ TGG ++ G+ + P+ + +
Sbjct: 26 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQ 85
Query: 555 EQTDIH--SPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDIKDSLVGIP 611
+I S Q ++ ++ R +D +EE I +++ +D+ V +
Sbjct: 86 YPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV- 144
Query: 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTT--V 669
G S ++KR I V P + +DE SGLD A +V V N +R G+ + +
Sbjct: 145 ---GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV-NSLRDGKRSFII 200
Query: 670 CTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699
T +Q +D + +L + GRI+ SG
Sbjct: 201 VTHYQRILDYIKPDYVHVLYQ--GRIVKSG 228
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 22/216 (10%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTF--- 547
+L+DI+ + PG + ++G SG GKTTL+ L+G + GEI + G K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 548 --ARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEE---VIETIELDD 602
R GY Q + P +TV ++ + K R +E + +EL
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG---------NGKGRTAQERQRIEAMLELTG 127
Query: 603 IKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV 662
I + P + LS Q++R +A L +P +I +DEP S LD + + + +
Sbjct: 128 ISELAGRYPHE--LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185
Query: 663 RTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698
R + + + + D + +MK GRI+ +
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQ-GRILQT 220
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 54/261 (20%), Positives = 117/261 (44%), Gaps = 28/261 (10%)
Query: 484 FNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY--- 540
++ ++ L++D++ G + A++G +GAGK+TL+ +L+G + GE + G
Sbjct: 19 YHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNLN 76
Query: 541 PKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL 600
K AR Q + +V E ++ R P + +A +++V+ +
Sbjct: 77 SWQPKALARTRAVMRQYSELAFPFSVSEVIQMG---RAPYGGSQDRQA--LQQVMAQTDC 131
Query: 601 DDI--KDSLVGIPGQSGLSTEQRKRLTIAVELVS------NPSIIFMDEPTSGLDARAAA 652
+ +D V LS +++R+ +A L P +F+DEPTS LD
Sbjct: 132 LALAQRDYRV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184
Query: 653 IVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR--HSSKLIE 710
+R ++ + R VC + +++ + + +++ A G+++ G ++ L +
Sbjct: 185 HTLRLLRQLTRQEPLAVCCVLH-DLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQ 243
Query: 711 YFQGISGVPQIKANYNPATWM 731
++Q GV + + P ++
Sbjct: 244 WYQADLGVSRHPESALPQIYL 264
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 23/153 (15%)
Query: 507 LMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566
L G++GAGKTTL+++L+ + G + + G K ++ E H ++
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPA--TSGTVNLFG-----KXPGKVGYSAETVRQHIGFVSH 104
Query: 567 EESVKFSAWLRLPPEIDSETKARFVE-EVIETIELDDIKDS------LVGIPGQSG---- 615
KF R+ ID F V + I+ D+I++ LVG ++
Sbjct: 105 SLLEKFQEGERV---IDVVISGAFKSIGVYQDID-DEIRNEAHQLLKLVGXSAKAQQYIG 160
Query: 616 -LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647
LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 161 YLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 119/290 (41%), Gaps = 48/290 (16%)
Query: 484 FNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDV-LSGRKTGGIIQGEIRVGGYP- 541
+ E +L +I+ + PG L+G +G+GK+TL+ L T +GEI++ G
Sbjct: 29 YTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT----EGEIQIDGVSW 84
Query: 542 ------KVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVI 595
+ +K F I PQ + FS R + ++ + + +V
Sbjct: 85 DSITLEQWRKAFGVI-----------PQ----KVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 596 ETIELDDIKDSLVG------IPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDAR 649
+ + L + + G + G LS ++ + +A ++S I+ +DEP++ LD
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 650 AAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLI 709
I+ R +K +C + I+ D+ L+++ Y +L +
Sbjct: 190 TYQIIRRTLKQAFADCTVILC---EARIEAMLECDQFLVIEENKVRQYDSILELYHYPAD 246
Query: 710 EYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQE 759
+ G G P K N+ P ++VT+ + +D ++ L P Q+
Sbjct: 247 RFVAGFIGSP--KMNFLP----VKVTATA------IDQVQVELPMPNRQQ 284
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 31/213 (14%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L DI G L A+ G +GAGKT+L+ ++ G +G+I+ G RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDI-----K 604
S +C Q P T++E++ F S + R+ VI+ +L +DI K
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGV---------SYDEYRY-RSVIKACQLEEDISKFAEK 131
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D++V G LS QR R+++A + + + +D P LD + + +
Sbjct: 132 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+T + + ++ + D++L++ G Y
Sbjct: 192 NKTRILVTSK--MEHLKKADKILILHEGSSYFY 222
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 616 LSTEQRKRLTIAVELVSN--PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIH 673
LS + +RL +A +L SN + +DEP++GL ++ A++N+ R G + H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 674 QPSIDVFEAFDELLLM-----KAGGRIIYSG 699
+DV D L+ + + GG I+YSG
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSG 468
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 616 LSTEQRKRLTIAVELVSNP---SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTI 672
LS + +R+ +A EL + ++ +DEPT+GL + R + +V G T +
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 673 HQPSIDVFEAFDELLLM-----KAGGRIIYSG 699
H+ + V A D +L + + GGR++ G
Sbjct: 791 HK--MQVVAASDWVLDIGPGAGEDGGRLVAQG 820
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 30/175 (17%)
Query: 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQ 556
G F + +MG +G GKTTL+ +L+G Q ++ K QK + G Q
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ 432
Query: 557 TDIHSPQITVEESVKFSAWLR---LPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQ 613
F +R L P+ F +V++ + +DDI D V
Sbjct: 433 L--------------FFKKIRGQFLNPQ--------FQTDVVKPLRIDDIIDQEV----- 465
Query: 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTT 668
LS + +R+ I + L I +DEP++ LD+ I + ++ + + T
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 33/197 (16%)
Query: 500 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQT-- 557
RPG + L+G +G GK+T + +L+G++ + R P+ Q+ G Q
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG----RFDDPPEWQEIIKYFRGSELQNYF 156
Query: 558 ------DIHS----------PQITVEESVKFSAWLRLPPEIDSETKARFVEEV-IETIEL 600
DI + P+ K L+L E E R+++ + +E +
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK 216
Query: 601 DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKN 660
DI+ LS + +R I + V + DEP+S LD + + +++
Sbjct: 217 RDIEK----------LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
Query: 661 VVRTGRTTVCTIHQPSI 677
++ + +C H S+
Sbjct: 267 LLAPTKYVICVEHDLSV 283
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 31/213 (14%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L DI G L A+ G +GAGKT+L+ ++ G +G+I+ G RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDI-----K 604
S +C Q P T++E++ F S + R+ VI+ +L +DI K
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGV---------SYDEYRY-RSVIKACQLEEDISKFAEK 119
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D++V G LS QR R+++A + + + +D P LD + + +
Sbjct: 120 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+T + + ++ + D++L++ G Y
Sbjct: 180 NKTRILVTSK--MEHLKKADKILILHEGSSYFY 210
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDAR 649
LS +++R+ +A LV+NP I+ +DEP S LD R
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 96/211 (45%), Gaps = 32/211 (15%)
Query: 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARIS 551
L+ IT + G L A++G G GK++L+ L +V G+ ++ + A +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--------KVEGHVAIKGSVAYVP 72
Query: 552 GYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIP 611
+Q I + ++ E++ F L P S +A + +E + D + +G
Sbjct: 73 ---QQAWIQND--SLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTE--IGEK 124
Query: 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV---KNVVRTGRTT 668
G + LS Q++R+++A + SN I D+P S +DA + V K +++ +T
Sbjct: 125 GVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN-KTR 182
Query: 669 VCTIHQ----PSIDVFEAFDELLLMKAGGRI 695
+ H P +DV +++ +GG+I
Sbjct: 183 ILVTHSMSYLPQVDV-------IIVMSGGKI 206
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 32/213 (15%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L DI G L A+ G +GAGKT+L+ ++ G +G+I+ G RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDI-----K 604
S +C Q P T++E++ ++ E + R VI+ +L +DI K
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSY--------DEYRYR---SVIKACQLEEDISKFAEK 148
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D++V G LS QR R+++A + + + +D P LD + + +
Sbjct: 149 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+T + + ++ + D++L++ G Y
Sbjct: 209 NKTRILVTSK--MEHLKKADKILILHEGSSYFY 239
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 32/213 (15%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L DI G L A+ G +GAGKT+L+ ++ G +G+I+ G RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDI-----K 604
S +C Q P T++E++ ++ E + R VI+ +L +DI K
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSY--------DEYRYR---SVIKACQLEEDISKFAEK 148
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D++V G LS QR R+++A + + + +D P LD + + +
Sbjct: 149 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+T + + ++ + D++L++ G Y
Sbjct: 209 NKTRILVTSK--MEHLKKADKILILHEGSSYFY 239
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 32/213 (15%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L DI G L A+ G +GAGKT+L+ ++ G +G+I+ G RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDI-----K 604
S +C Q P T++E++ ++ E + R VI+ +L +DI K
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIGVSY--------DEYRYR---SVIKACQLEEDISKFAEK 118
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D++V G LS QR R+++A + + + +D P LD + + +
Sbjct: 119 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 178
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+T + + ++ + D++L++ G Y
Sbjct: 179 NKTRILVTSK--MEHLKKADKILILHEGSSYFY 209
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 101/231 (43%), Gaps = 31/231 (13%)
Query: 504 LTALMGVSGAGKTTLMDVLSGR--KTGGIIQGEIRVGGYP----------KVQ-KTFARI 550
+TA++G S +GK+T+++ ++ G I+ G + G K++ K A +
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 551 SGYCEQTDIHSPQITVEESVKFSA------WLRLPPEIDSETKARFVEEVIETIELDDIK 604
+Q+ +P + V E K + W + + +E+ E + + +
Sbjct: 96 PQAAQQS--LNPTMKVIEHFKDTVEAHGVRW----------SHSELIEKASEKLRMVRLN 143
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
V LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++ +K + +
Sbjct: 144 PEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKM 203
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIEYFQGI 715
+ T+ + E D++ ++ G + Y+ + L Y +G+
Sbjct: 204 LKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTRGL 254
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 90/213 (42%), Gaps = 31/213 (14%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L DI G L A+ G +GAGKT+L+ ++ G +G+I+ G RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDI-----K 604
S +C Q P E + ++ E + R VI+ +L +DI K
Sbjct: 102 S-FCSQFSWIMPGTIKENIIAGVSY--------DEYRYR---SVIKACQLEEDISKFAEK 149
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D++V G LS QR R+++A + + + +D P LD + + +
Sbjct: 150 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+T + + ++ + D++L++ G Y
Sbjct: 210 NKTRILVTSK--MEHLKKADKILILHEGSSYFY 240
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 24/181 (13%)
Query: 507 LMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566
++G +G+GKTTL+ +SG G I + G +V+K I + + +TV
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGM-EVRKIRNYIRYSTNLPEAYEIGVTV 90
Query: 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD--IKDSLVGIPGQSGLSTEQRKRL 624
+ V L E+ + F+E +++ ++L + ++ L LS Q +
Sbjct: 91 NDIV------YLYEELKGLDRDLFLE-MLKALKLGEEILRRKLYK------LSAGQSVLV 137
Query: 625 TIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFD 684
++ L S P I+ +DEP +DA ++ R +K G+ + H+ +D+ +
Sbjct: 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHE--LDMLNLYK 192
Query: 685 E 685
E
Sbjct: 193 E 193
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 12/64 (18%)
Query: 477 PAMRKQGFNEKKLQLL----HDITG---AFRPGILTALMGVSGAGKTTLMD-----VLSG 524
PA+R+ ++L ++ H++ G +F G+LT++ GVSG+GK+TL++ VL+
Sbjct: 636 PAIRRSVDPRRQLTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLAN 695
Query: 525 RKTG 528
R G
Sbjct: 696 RLNG 699
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 31/213 (14%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L DI G L A+ G +GAGKT+L+ ++ G +G+I+ G RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDI-----K 604
S +C Q P T++E++ F S + R+ VI+ +L +DI K
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGV---------SYDEYRY-RSVIKACQLEEDISKFAEK 149
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D++V G LS Q+ ++++A + + + +D P LD + + +
Sbjct: 150 DNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+T + + ++ + D++L++ G Y
Sbjct: 210 NKTRILVTSK--MEHLKKADKILILHEGSSYFY 240
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 46/206 (22%)
Query: 534 EIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEI------DSET- 586
E +V GY K + +F G CE H I ++ + F + +P E+ + ET
Sbjct: 736 EAKVRGYKKGRFSFNVKGGRCEAC--HGDGI-IKIEMHFLPDVYVPCEVCHGKRYNRETL 792
Query: 587 ----KARFVEEVIETIELDDIKDSLVGIP-------------------GQ--SGLSTEQR 621
K + + EV++ + ++D D IP GQ + LS +
Sbjct: 793 EVTYKGKNIAEVLD-MTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEA 851
Query: 622 KRLTIAVEL--VSNPSIIF-MDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSID 678
+R+ +A EL SN ++ +DEPT+GL A ++ + +V G T + H ++D
Sbjct: 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLD 909
Query: 679 VFEAFDELLLM-----KAGGRIIYSG 699
V + D ++ + GG+I+ G
Sbjct: 910 VIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 46/206 (22%)
Query: 534 EIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEI------DSET- 586
E +V GY K + +F G CE H I ++ + F + +P E+ + ET
Sbjct: 434 EAKVRGYKKGRFSFNVKGGRCEAC--HGDGI-IKIEMHFLPDVYVPCEVCHGKRYNRETL 490
Query: 587 ----KARFVEEVIETIELDDIKDSLVGIP-------------------GQ--SGLSTEQR 621
K + + EV++ + ++D D IP GQ + LS +
Sbjct: 491 EVTYKGKNIAEVLD-MTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEA 549
Query: 622 KRLTIAVEL--VSNPSIIF-MDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSID 678
+R+ +A EL SN ++ +DEPT+GL A ++ + +V G T + H ++D
Sbjct: 550 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLD 607
Query: 679 VFEAFDELLLM-----KAGGRIIYSG 699
V + D ++ + GG+I+ G
Sbjct: 608 VIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 616 LSTEQRKRLTIAVEL--VSNPSIIF-MDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTI 672
LS + +R+ +A EL SN ++ +DEPT+GL A ++ + +V G T +
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 673 HQPSIDVFEAFDELLLM-----KAGGRIIYSG 699
H ++DV + D ++ + GG+I+ G
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVK 659
GLS Q+ +L +A P +I +DEPT+ LD + + +A+K
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVK 659
GLS Q+ +L +A P +I +DEPT+ LD + + +A+K
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D ++ +P S LS + +L +A ++ N I+ +DEPT+ LD A ++ N + T
Sbjct: 539 DEMIAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLV----NYLNT 593
Query: 665 GRTTVCTIHQPSI 677
T TI S+
Sbjct: 594 CGITSITISHDSV 606
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVK 659
GLS Q+ +L +A P +I +DEPT+ LD + + +A+K
Sbjct: 895 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 939
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 616 LSTEQRKRLTIAVELV---SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTI 672
LS + +R+ +A EL + ++ +DEPT GL ++ + +V G T +
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 673 HQPSIDVFEAFDELLLM-----KAGGRIIYSG 699
H ++DV + D ++ + K GG I+ +G
Sbjct: 866 H--NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 616 LSTEQRKRLTIAVELVSNPS--IIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIH 673
LS + +R+ +A ++ S + I +DEPT GL R +++ +K + G T + H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 674 QPSI 677
+
Sbjct: 525 DEEV 528
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate
Regulatory Protein (Bt4638) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 639 MDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDEL 686
MD+ G+++ A IV+ + + +G+ IH+ +I++ +A DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 485 NEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG 528
N + L++L IT +P ++ A++G+ GK+ LM+ L+G+K G
Sbjct: 35 NPEALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 485 NEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG 528
N + L++L IT +P ++ A++G+ GK+ LM+ L+G+K G
Sbjct: 24 NPEALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 32/213 (15%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARI 550
+L DI G L A+ G +GAGKT+L+ ++ G +G+I+ G RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 551 SGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDI-----K 604
S +C Q P T++E++ ++ E + R VI+ +L +DI K
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSY--------DEYRYR---SVIKACQLEEDISKFAEK 148
Query: 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664
D++V G LS Q+ ++++A + + + +D P LD + + +
Sbjct: 149 DNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+T + + ++ + D++L++ G Y
Sbjct: 209 NKTRILVTSK--MEHLKKADKILILHEGSSYFY 239
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 495 ITGAFRPGILTALMGVSGAGKTTL---MDVLSGRK 526
+ G F PG+LT + G +GKTTL +LSG+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 35/215 (16%)
Query: 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFA 548
+L +I G + A+ G +G+GKT+L+ ++ G + GII+ RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV----------- 101
Query: 549 RISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDI---- 603
+C Q P T++E++ F S + R+ + V++ +L DI
Sbjct: 102 ---SFCSQFSWIMPG-TIKENIIFGV---------SYDEYRY-KSVVKACQLQQDITKFA 147
Query: 604 -KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV 662
+D+ V G LS QR R+++A + + + +D P LD V + +
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 663 RTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697
+T + + ++ D++L++ G Y
Sbjct: 208 MANKTRILVTSK--MEHLRKADKILILHQGSSYFY 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,584,588
Number of Sequences: 62578
Number of extensions: 1271356
Number of successful extensions: 3654
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 3459
Number of HSP's gapped (non-prelim): 168
length of query: 1045
length of database: 14,973,337
effective HSP length: 109
effective length of query: 936
effective length of database: 8,152,335
effective search space: 7630585560
effective search space used: 7630585560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)