Query 043954
Match_columns 1045
No_of_seqs 625 out of 4753
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 2E-181 4E-186 1629.6 84.3 1030 2-1043 301-1366(1391)
2 PLN03140 ABC transporter G fam 100.0 4E-175 8E-180 1688.3 103.5 1042 1-1045 376-1451(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 2E-161 4E-166 1569.1 100.5 1020 1-1045 249-1376(1394)
4 PLN03211 ABC transporter G-25; 100.0 1.3E-93 2.9E-98 871.0 55.5 566 460-1044 36-642 (659)
5 KOG0061 Transporter, ABC super 100.0 5.7E-94 1.2E-98 865.0 47.7 560 461-1044 23-592 (613)
6 TIGR00955 3a01204 The Eye Pigm 100.0 8.1E-93 1.8E-97 865.8 53.2 548 487-1044 36-597 (617)
7 TIGR00956 3a01205 Pleiotropic 100.0 3.3E-91 7.2E-96 910.2 54.7 575 460-1045 26-679 (1394)
8 PLN03140 ABC transporter G fam 100.0 5.2E-90 1.1E-94 894.2 52.3 579 458-1044 126-773 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 2.7E-83 5.9E-88 776.4 34.1 548 487-1044 126-714 (1391)
10 PLN03211 ABC transporter G-25; 100.0 8.3E-62 1.8E-66 592.2 38.8 396 1-412 246-657 (659)
11 KOG0061 Transporter, ABC super 100.0 3.5E-62 7.5E-67 589.2 32.2 395 1-413 210-608 (613)
12 TIGR00955 3a01204 The Eye Pigm 100.0 2.7E-61 5.8E-66 588.7 36.8 398 1-412 206-612 (617)
13 COG1126 GlnQ ABC-type polar am 100.0 1E-49 2.3E-54 399.8 22.8 215 464-702 3-221 (240)
14 COG1135 AbcC ABC-type metal io 100.0 9.5E-47 2.1E-51 397.2 20.3 219 464-702 2-227 (339)
15 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-45 2.4E-50 376.5 21.2 231 462-716 7-249 (263)
16 COG1125 OpuBA ABC-type proline 100.0 6.6E-46 1.4E-50 378.9 19.4 215 464-703 2-222 (309)
17 COG1116 TauB ABC-type nitrate/ 100.0 2.5E-45 5.4E-50 380.5 21.5 203 463-691 3-206 (248)
18 KOG0058 Peptide exporter, ABC 100.0 7.7E-46 1.7E-50 429.6 17.8 255 415-702 429-687 (716)
19 COG1136 SalX ABC-type antimicr 100.0 9E-45 1.9E-49 377.1 23.3 208 465-694 3-219 (226)
20 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.7E-44 3.8E-49 380.0 23.9 218 463-704 4-225 (254)
21 COG3638 ABC-type phosphate/pho 100.0 5.3E-45 1.2E-49 370.5 18.4 220 463-704 3-235 (258)
22 COG1120 FepC ABC-type cobalami 100.0 9.7E-45 2.1E-49 384.2 21.1 227 463-712 2-236 (258)
23 COG1131 CcmA ABC-type multidru 100.0 4E-44 8.7E-49 396.9 24.7 214 463-701 4-221 (293)
24 KOG0055 Multidrug/pheromone ex 100.0 1.1E-42 2.4E-47 424.6 37.8 260 412-702 946-1209(1228)
25 TIGR01257 rim_protein retinal- 100.0 1.6E-39 3.6E-44 423.3 68.0 453 209-702 665-1145(2272)
26 COG4555 NatA ABC-type Na+ tran 100.0 1.2E-44 2.5E-49 357.6 14.7 202 489-702 15-218 (245)
27 COG3842 PotA ABC-type spermidi 100.0 4.2E-44 9.1E-49 395.6 20.4 217 463-703 5-223 (352)
28 COG3839 MalK ABC-type sugar tr 100.0 5.2E-44 1.1E-48 392.9 20.7 216 463-703 3-220 (338)
29 COG1118 CysA ABC-type sulfate/ 100.0 3.8E-44 8.1E-49 376.3 18.5 207 487-703 13-224 (345)
30 COG2884 FtsE Predicted ATPase 100.0 7.1E-44 1.5E-48 349.4 19.2 212 464-700 2-220 (223)
31 COG2274 SunT ABC-type bacterio 100.0 3.2E-44 6.9E-49 434.0 18.6 277 390-703 408-693 (709)
32 COG1117 PstB ABC-type phosphat 100.0 2E-43 4.4E-48 352.3 20.0 220 462-702 6-233 (253)
33 COG3840 ThiQ ABC-type thiamine 100.0 1.4E-42 3E-47 337.2 17.2 197 494-702 17-215 (231)
34 PRK13537 nodulation ABC transp 100.0 5.5E-42 1.2E-46 383.6 24.6 216 462-702 6-223 (306)
35 TIGR02314 ABC_MetN D-methionin 100.0 1.1E-41 2.4E-46 384.0 25.6 218 464-702 2-226 (343)
36 TIGR01257 rim_protein retinal- 100.0 9E-41 2E-45 435.0 37.7 443 212-701 1690-2154(2272)
37 COG1124 DppF ABC-type dipeptid 100.0 4.2E-42 9E-47 352.6 19.9 217 463-702 3-227 (252)
38 PRK11650 ugpC glycerol-3-phosp 100.0 1.5E-41 3.4E-46 386.1 24.4 216 463-702 3-220 (356)
39 KOG0055 Multidrug/pheromone ex 100.0 3.5E-41 7.7E-46 411.5 28.8 257 417-703 314-573 (1228)
40 TIGR03265 PhnT2 putative 2-ami 100.0 1.9E-41 4.1E-46 384.9 24.3 215 463-702 4-220 (353)
41 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-41 3.9E-46 367.1 22.9 213 465-701 2-221 (235)
42 PRK11432 fbpC ferric transport 100.0 2.6E-41 5.6E-46 383.1 24.6 215 463-702 6-222 (351)
43 TIGR03258 PhnT 2-aminoethylpho 100.0 4.4E-41 9.5E-46 382.3 24.4 215 463-702 5-224 (362)
44 PRK13536 nodulation factor exp 100.0 8.3E-41 1.8E-45 377.8 25.1 216 462-702 40-257 (340)
45 COG1122 CbiO ABC-type cobalt t 100.0 4E-41 8.7E-46 357.4 20.2 215 463-701 3-223 (235)
46 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-40 2.4E-45 355.4 23.8 210 465-699 2-213 (213)
47 COG1137 YhbG ABC-type (unclass 100.0 3.9E-42 8.4E-47 339.4 11.4 207 487-703 15-225 (243)
48 PRK10851 sulfate/thiosulfate t 100.0 9.8E-41 2.1E-45 379.1 24.2 217 464-702 3-222 (353)
49 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-40 2.3E-45 356.3 22.5 209 464-695 2-216 (216)
50 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.3E-40 4.9E-45 354.8 24.7 216 465-702 2-219 (220)
51 PRK11174 cysteine/glutathione 100.0 4.6E-41 1E-45 411.9 21.7 248 416-702 313-568 (588)
52 COG4987 CydC ABC-type transpor 100.0 3E-41 6.5E-46 378.1 17.9 246 416-702 302-557 (573)
53 PRK09452 potA putrescine/sperm 100.0 2.1E-40 4.5E-45 378.1 25.2 215 463-702 14-230 (375)
54 PRK11607 potG putrescine trans 100.0 2.5E-40 5.4E-45 378.1 25.8 215 463-702 19-235 (377)
55 cd03265 ABC_DrrA DrrA is the A 100.0 2.3E-40 5E-45 354.7 23.7 212 465-701 2-216 (220)
56 COG4988 CydD ABC-type transpor 100.0 5.4E-41 1.2E-45 383.0 19.7 214 461-703 318-540 (559)
57 TIGR01288 nodI ATP-binding ABC 100.0 3.3E-40 7.2E-45 369.8 25.4 215 462-701 3-219 (303)
58 TIGR01188 drrA daunorubicin re 100.0 2.1E-40 4.5E-45 371.3 23.3 202 488-701 5-208 (302)
59 PRK11000 maltose/maltodextrin 100.0 3E-40 6.5E-45 378.1 24.5 215 463-702 3-219 (369)
60 cd03269 ABC_putative_ATPase Th 100.0 3.2E-40 6.9E-45 351.1 22.8 209 465-699 2-210 (210)
61 cd03301 ABC_MalK_N The N-termi 100.0 4.5E-40 9.8E-45 350.8 24.0 210 465-699 2-213 (213)
62 COG1132 MdlB ABC-type multidru 100.0 6.9E-41 1.5E-45 408.1 20.1 247 417-703 295-549 (567)
63 cd03296 ABC_CysA_sulfate_impor 100.0 5.9E-40 1.3E-44 356.1 24.8 217 463-701 2-221 (239)
64 cd03219 ABC_Mj1267_LivG_branch 100.0 5.4E-40 1.2E-44 355.9 24.4 215 465-701 2-227 (236)
65 TIGR01186 proV glycine betaine 100.0 2.6E-40 5.6E-45 374.7 22.8 203 488-702 5-215 (363)
66 PRK11153 metN DL-methionine tr 100.0 5.4E-40 1.2E-44 373.1 25.3 218 464-702 2-226 (343)
67 KOG0057 Mitochondrial Fe/S clu 100.0 3.9E-41 8.5E-46 377.2 15.4 220 461-703 349-571 (591)
68 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.1E-40 2.3E-45 415.1 20.5 243 416-702 417-669 (686)
69 cd03218 ABC_YhbG The ABC trans 100.0 7.2E-40 1.6E-44 354.0 24.2 213 465-702 2-218 (232)
70 cd03260 ABC_PstB_phosphate_tra 100.0 5.3E-40 1.1E-44 353.8 23.0 214 465-702 2-225 (227)
71 cd03266 ABC_NatA_sodium_export 100.0 5.8E-40 1.3E-44 351.3 23.2 215 464-699 2-218 (218)
72 COG0411 LivG ABC-type branched 100.0 1.1E-40 2.4E-45 342.5 16.6 208 487-703 15-236 (250)
73 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.6E-40 1.2E-44 351.4 22.2 208 465-694 2-217 (218)
74 COG0410 LivF ABC-type branched 100.0 3.4E-40 7.3E-45 336.4 19.2 214 464-703 4-223 (237)
75 PRK09536 btuD corrinoid ABC tr 100.0 5.3E-40 1.2E-44 376.6 22.9 218 463-703 3-225 (402)
76 cd03268 ABC_BcrA_bacitracin_re 100.0 6.6E-40 1.4E-44 348.2 21.9 206 465-699 2-208 (208)
77 cd03263 ABC_subfamily_A The AB 100.0 8.1E-40 1.8E-44 350.7 22.4 213 465-701 2-216 (220)
78 cd03258 ABC_MetN_methionine_tr 100.0 1.2E-39 2.6E-44 352.5 23.9 217 464-701 2-225 (233)
79 cd03256 ABC_PhnC_transporter A 100.0 7.3E-40 1.6E-44 356.1 22.0 217 465-702 2-230 (241)
80 cd03226 ABC_cobalt_CbiO_domain 100.0 6.4E-40 1.4E-44 347.4 21.0 192 489-696 13-205 (205)
81 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.2E-40 1.3E-44 361.5 21.6 204 486-701 34-245 (269)
82 TIGR03522 GldA_ABC_ATP gliding 100.0 1.3E-39 2.9E-44 364.3 24.3 213 464-702 3-217 (301)
83 cd03234 ABCG_White The White s 100.0 3.1E-39 6.7E-44 347.4 25.5 221 464-699 4-226 (226)
84 PRK09493 glnQ glutamine ABC tr 100.0 2.3E-39 4.9E-44 351.8 24.7 214 464-701 2-220 (240)
85 PRK11629 lolD lipoprotein tran 100.0 3.1E-39 6.7E-44 349.0 25.6 217 463-701 5-229 (233)
86 TIGR02673 FtsE cell division A 100.0 1.6E-39 3.6E-44 346.8 23.0 207 464-694 2-214 (214)
87 PRK13637 cbiO cobalt transport 100.0 2.2E-39 4.8E-44 360.1 25.0 219 464-702 3-230 (287)
88 COG4525 TauB ABC-type taurine 100.0 1.3E-39 2.7E-44 319.6 20.0 201 489-702 18-220 (259)
89 KOG0056 Heavy metal exporter H 100.0 3.5E-41 7.6E-46 367.9 10.1 253 417-702 502-757 (790)
90 cd03292 ABC_FtsE_transporter F 100.0 1.5E-39 3.3E-44 347.0 22.5 206 465-694 2-213 (214)
91 TIGR02315 ABC_phnC phosphonate 100.0 9.8E-40 2.1E-44 355.5 21.4 218 464-702 2-231 (243)
92 PRK11248 tauB taurine transpor 100.0 3.3E-39 7.2E-44 352.7 25.3 212 464-701 2-215 (255)
93 PRK11264 putative amino-acid A 100.0 3.3E-39 7.2E-44 352.8 25.2 214 464-701 4-228 (250)
94 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.2E-39 4.7E-44 352.3 23.5 212 465-701 2-220 (242)
95 TIGR03375 type_I_sec_LssB type 100.0 4.3E-40 9.2E-45 410.2 20.3 248 416-702 427-684 (694)
96 cd03224 ABC_TM1139_LivF_branch 100.0 1.9E-39 4.1E-44 348.4 22.2 210 465-701 2-216 (222)
97 PRK15079 oligopeptide ABC tran 100.0 4.5E-39 9.7E-44 362.7 26.2 231 462-702 7-247 (331)
98 PRK13651 cobalt transporter AT 100.0 2.3E-39 4.9E-44 361.7 23.5 219 464-702 3-250 (305)
99 PRK11831 putative ABC transpor 100.0 3E-39 6.6E-44 356.3 24.1 216 463-702 7-229 (269)
100 PRK13647 cbiO cobalt transport 100.0 3E-39 6.6E-44 356.8 24.1 215 463-701 4-222 (274)
101 PRK10790 putative multidrug tr 100.0 7E-40 1.5E-44 401.5 20.7 243 416-702 307-559 (592)
102 COG4559 ABC-type hemin transpo 100.0 2E-39 4.4E-44 322.9 19.9 226 464-712 2-238 (259)
103 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.3E-40 9.2E-45 411.5 18.8 252 416-702 435-696 (710)
104 PRK13643 cbiO cobalt transport 100.0 3.3E-39 7.1E-44 358.9 23.9 219 464-702 2-229 (288)
105 PRK11176 lipid transporter ATP 100.0 6.1E-40 1.3E-44 401.8 19.7 247 416-702 307-563 (582)
106 PRK13634 cbiO cobalt transport 100.0 3.9E-39 8.5E-44 358.6 24.4 219 464-702 3-231 (290)
107 PRK10908 cell division protein 100.0 4.9E-39 1.1E-43 345.0 24.3 209 464-696 2-216 (222)
108 cd03262 ABC_HisP_GlnQ_permease 100.0 2.9E-39 6.3E-44 344.6 22.3 206 465-694 2-212 (213)
109 TIGR00958 3a01208 Conjugate Tr 100.0 4.7E-40 1E-44 409.0 18.7 246 416-702 443-698 (711)
110 COG4152 ABC-type uncharacteriz 100.0 9.3E-40 2E-44 331.7 17.3 213 464-702 3-215 (300)
111 COG4181 Predicted ABC-type tra 100.0 7.7E-40 1.7E-44 314.5 15.8 213 463-697 6-226 (228)
112 cd03264 ABC_drug_resistance_li 100.0 2.8E-39 6E-44 344.2 21.9 208 465-699 2-211 (211)
113 TIGR01193 bacteriocin_ABC ABC- 100.0 7.6E-40 1.7E-44 408.8 20.1 247 416-702 437-693 (708)
114 cd03257 ABC_NikE_OppD_transpor 100.0 5.2E-39 1.1E-43 346.5 23.8 217 464-699 2-228 (228)
115 COG4618 ArpD ABC-type protease 100.0 4E-40 8.7E-45 365.3 15.4 250 414-702 299-556 (580)
116 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7E-39 1.5E-43 347.0 24.9 212 464-701 2-216 (236)
117 PRK13631 cbiO cobalt transport 100.0 5.3E-39 1.1E-43 360.8 24.6 219 463-702 21-261 (320)
118 PRK10895 lipopolysaccharide AB 100.0 3.8E-39 8.2E-44 350.3 22.6 216 463-702 3-222 (241)
119 TIGR02211 LolD_lipo_ex lipopro 100.0 5.7E-39 1.2E-43 344.4 23.5 211 464-696 2-220 (221)
120 PRK11160 cysteine/glutathione 100.0 9.2E-40 2E-44 397.6 19.4 247 416-702 303-558 (574)
121 PRK13650 cbiO cobalt transport 100.0 5.7E-39 1.2E-43 355.6 23.6 217 463-702 4-225 (279)
122 TIGR00972 3a0107s01c2 phosphat 100.0 7.6E-39 1.7E-43 349.1 24.2 214 464-701 2-227 (247)
123 PRK11247 ssuB aliphatic sulfon 100.0 7.9E-39 1.7E-43 349.2 23.9 206 463-701 12-218 (257)
124 cd03225 ABC_cobalt_CbiO_domain 100.0 4.6E-39 1E-43 342.6 21.3 194 489-694 14-211 (211)
125 PRK10619 histidine/lysine/argi 100.0 9.1E-39 2E-43 350.5 24.3 214 463-701 5-236 (257)
126 PRK13646 cbiO cobalt transport 100.0 8.6E-39 1.9E-43 355.4 24.4 218 464-702 3-231 (286)
127 cd03235 ABC_Metallic_Cations A 100.0 3.7E-39 8E-44 343.7 20.3 199 489-699 12-213 (213)
128 PRK11124 artP arginine transpo 100.0 1E-38 2.2E-43 347.2 24.1 214 463-701 2-225 (242)
129 PRK13636 cbiO cobalt transport 100.0 8.8E-39 1.9E-43 354.8 23.7 216 463-702 5-227 (283)
130 PRK11614 livF leucine/isoleuci 100.0 5.6E-39 1.2E-43 348.1 21.6 213 463-702 5-222 (237)
131 PRK10070 glycine betaine trans 100.0 6.7E-39 1.5E-43 367.3 23.1 203 488-702 40-250 (400)
132 PRK13641 cbiO cobalt transport 100.0 1.3E-38 2.7E-43 354.3 24.6 220 463-702 2-230 (287)
133 TIGR01978 sufC FeS assembly AT 100.0 1.5E-38 3.2E-43 346.3 24.2 218 465-701 2-229 (243)
134 PTZ00265 multidrug resistance 100.0 1.6E-39 3.4E-44 425.6 19.7 260 415-702 1124-1448(1466)
135 TIGR03005 ectoine_ehuA ectoine 100.0 1.7E-38 3.7E-43 347.5 24.3 213 465-701 2-231 (252)
136 PRK13652 cbiO cobalt transport 100.0 1.4E-38 3E-43 352.4 23.8 215 464-702 4-223 (277)
137 PRK11300 livG leucine/isoleuci 100.0 1.7E-38 3.7E-43 348.3 24.2 218 463-702 5-239 (255)
138 TIGR01842 type_I_sec_PrtD type 100.0 4.2E-39 9E-44 390.3 21.0 248 416-702 283-538 (544)
139 TIGR03740 galliderm_ABC gallid 100.0 2.1E-38 4.7E-43 340.3 24.1 209 465-703 2-210 (223)
140 PRK13644 cbiO cobalt transport 100.0 1.5E-38 3.2E-43 351.3 23.5 214 464-702 2-220 (274)
141 PRK14273 phosphate ABC transpo 100.0 2.7E-38 5.8E-43 346.3 25.2 215 463-701 7-233 (254)
142 TIGR03415 ABC_choXWV_ATP choli 100.0 1E-38 2.2E-43 363.1 22.6 205 487-703 35-251 (382)
143 PRK14247 phosphate ABC transpo 100.0 3E-38 6.6E-43 345.1 25.3 216 464-701 4-229 (250)
144 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.8E-38 4E-43 337.9 22.7 194 494-699 16-211 (211)
145 PRK14268 phosphate ABC transpo 100.0 3.1E-38 6.7E-43 346.4 25.1 215 462-701 11-237 (258)
146 PRK13638 cbiO cobalt transport 100.0 2.6E-38 5.5E-43 349.4 24.3 214 464-702 2-221 (271)
147 TIGR03411 urea_trans_UrtD urea 100.0 2.8E-38 6E-43 343.8 24.1 216 464-702 3-227 (242)
148 PRK11022 dppD dipeptide transp 100.0 4.4E-38 9.6E-43 354.6 26.4 221 464-702 4-239 (326)
149 PRK13635 cbiO cobalt transport 100.0 2.1E-38 4.5E-43 350.8 23.3 216 463-702 5-225 (279)
150 PRK13548 hmuV hemin importer A 100.0 2.7E-38 6E-43 346.5 24.0 214 464-702 3-226 (258)
151 TIGR03410 urea_trans_UrtE urea 100.0 2.4E-38 5.1E-43 341.7 22.9 211 465-703 2-218 (230)
152 PRK11308 dppF dipeptide transp 100.0 4.4E-38 9.5E-43 354.4 25.8 226 463-702 5-240 (327)
153 TIGR02769 nickel_nikE nickel i 100.0 3.7E-38 8.1E-43 347.0 24.6 224 464-702 3-236 (265)
154 PRK11231 fecE iron-dicitrate t 100.0 2E-38 4.4E-43 347.4 22.4 218 464-703 3-224 (255)
155 PRK10575 iron-hydroxamate tran 100.0 2.7E-38 5.9E-43 348.1 23.4 218 463-702 11-233 (265)
156 PRK10584 putative ABC transpor 100.0 4.2E-38 9E-43 339.3 24.3 213 463-697 6-226 (228)
157 PRK14267 phosphate ABC transpo 100.0 4.5E-38 9.8E-43 344.4 25.0 218 463-702 4-233 (253)
158 PRK13632 cbiO cobalt transport 100.0 4.2E-38 9E-43 347.6 24.3 217 462-702 6-227 (271)
159 cd03267 ABC_NatA_like Similar 100.0 3.4E-38 7.4E-43 341.3 23.2 202 486-699 31-236 (236)
160 PRK09984 phosphonate/organopho 100.0 4.2E-38 9.1E-43 346.3 24.2 221 463-703 4-239 (262)
161 TIGR01846 type_I_sec_HlyB type 100.0 7.6E-39 1.6E-43 398.6 20.5 247 416-702 420-676 (694)
162 cd03233 ABC_PDR_domain1 The pl 100.0 4.7E-38 1E-42 331.7 23.2 196 463-699 3-202 (202)
163 COG4175 ProV ABC-type proline/ 100.0 8.9E-39 1.9E-43 335.6 17.5 202 490-703 42-251 (386)
164 PRK10253 iron-enterobactin tra 100.0 4.3E-38 9.3E-43 346.5 23.8 220 461-702 5-229 (265)
165 PRK13649 cbiO cobalt transport 100.0 5.2E-38 1.1E-42 348.8 24.6 219 464-702 3-230 (280)
166 PRK09473 oppD oligopeptide tra 100.0 7.4E-38 1.6E-42 353.1 26.2 225 463-702 12-247 (330)
167 PRK14241 phosphate transporter 100.0 6.9E-38 1.5E-42 343.8 25.0 218 463-702 4-238 (258)
168 TIGR01277 thiQ thiamine ABC tr 100.0 5.5E-38 1.2E-42 334.6 23.5 209 465-700 2-212 (213)
169 PRK13639 cbiO cobalt transport 100.0 5.6E-38 1.2E-42 347.1 24.4 215 464-702 2-222 (275)
170 TIGR03873 F420-0_ABC_ATP propo 100.0 4.1E-38 9E-43 345.1 22.8 217 464-702 2-222 (256)
171 COG0444 DppD ABC-type dipeptid 100.0 4E-38 8.8E-43 337.8 22.1 224 464-702 2-239 (316)
172 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-38 2.9E-43 389.6 20.9 211 463-702 334-554 (588)
173 PRK13549 xylose transporter AT 100.0 5.3E-38 1.1E-42 377.2 25.5 222 463-704 5-230 (506)
174 cd03300 ABC_PotA_N PotA is an 100.0 9.1E-38 2E-42 337.3 24.8 212 465-701 2-215 (232)
175 PRK14256 phosphate ABC transpo 100.0 1.2E-37 2.6E-42 340.8 26.0 217 463-702 4-232 (252)
176 PRK10744 pstB phosphate transp 100.0 7.7E-38 1.7E-42 343.7 24.5 218 460-701 10-239 (260)
177 TIGR00968 3a0106s01 sulfate AB 100.0 6.6E-38 1.4E-42 339.4 23.5 213 465-702 2-216 (237)
178 PRK14245 phosphate ABC transpo 100.0 7.5E-38 1.6E-42 341.9 24.2 215 463-701 3-229 (250)
179 TIGR01184 ntrCD nitrate transp 100.0 5E-38 1.1E-42 338.6 22.4 198 492-701 1-199 (230)
180 PRK13648 cbiO cobalt transport 100.0 7.6E-38 1.6E-42 345.3 24.1 216 463-702 7-227 (269)
181 PRK14242 phosphate transporter 100.0 1E-37 2.2E-42 341.6 24.9 215 463-701 6-232 (253)
182 PRK13640 cbiO cobalt transport 100.0 6.8E-38 1.5E-42 347.5 23.8 217 462-702 4-228 (282)
183 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-38 2.6E-43 389.7 19.4 247 416-702 296-552 (571)
184 TIGR02868 CydC thiol reductant 100.0 9.3E-39 2E-43 386.7 17.9 225 416-675 296-529 (529)
185 PRK15093 antimicrobial peptide 100.0 1.2E-37 2.6E-42 352.3 25.6 223 464-702 4-244 (330)
186 PRK13633 cobalt transporter AT 100.0 6.9E-38 1.5E-42 347.3 23.2 220 463-702 4-229 (280)
187 PRK13645 cbiO cobalt transport 100.0 9.9E-38 2.2E-42 347.8 23.9 220 463-702 6-236 (289)
188 PRK10771 thiQ thiamine transpo 100.0 1E-37 2.2E-42 337.1 23.1 212 464-702 2-215 (232)
189 PRK14250 phosphate ABC transpo 100.0 8.1E-38 1.8E-42 339.5 22.4 209 463-701 3-216 (241)
190 PRK14237 phosphate transporter 100.0 2E-37 4.3E-42 341.4 25.8 221 461-701 18-246 (267)
191 TIGR03608 L_ocin_972_ABC putat 100.0 7E-38 1.5E-42 332.2 21.3 189 489-689 11-206 (206)
192 PRK13547 hmuV hemin importer A 100.0 1.1E-37 2.4E-42 343.0 23.4 216 464-702 2-240 (272)
193 PRK14269 phosphate ABC transpo 100.0 1.4E-37 3.1E-42 338.8 24.0 215 464-701 3-225 (246)
194 PRK10789 putative multidrug tr 100.0 2.3E-38 4.9E-43 385.4 19.4 246 416-702 279-534 (569)
195 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-37 3.2E-42 331.6 23.1 191 494-699 16-214 (214)
196 PRK14235 phosphate transporter 100.0 2.1E-37 4.5E-42 341.3 24.8 216 463-701 19-246 (267)
197 COG4598 HisP ABC-type histidin 100.0 2E-38 4.3E-43 306.7 14.6 206 486-702 16-237 (256)
198 PRK14259 phosphate ABC transpo 100.0 1.2E-37 2.6E-42 343.3 22.9 216 462-702 12-249 (269)
199 TIGR02142 modC_ABC molybdenum 100.0 1E-37 2.2E-42 356.2 23.1 195 494-702 15-217 (354)
200 cd03299 ABC_ModC_like Archeal 100.0 2.1E-37 4.6E-42 335.0 24.3 200 491-702 14-215 (235)
201 PRK11144 modC molybdate transp 100.0 1.1E-37 2.3E-42 355.5 22.9 191 494-702 16-214 (352)
202 PRK15112 antimicrobial peptide 100.0 1.9E-37 4.1E-42 341.6 24.0 224 463-701 4-234 (267)
203 cd03232 ABC_PDR_domain2 The pl 100.0 1.6E-37 3.5E-42 325.2 22.2 190 463-699 3-192 (192)
204 PRK14274 phosphate ABC transpo 100.0 2E-37 4.4E-42 340.2 23.7 216 463-702 12-239 (259)
205 PRK13642 cbiO cobalt transport 100.0 1.6E-37 3.6E-42 343.8 22.9 217 463-702 4-225 (277)
206 PRK14257 phosphate ABC transpo 100.0 2.4E-37 5.3E-42 348.3 24.6 221 463-702 80-309 (329)
207 TIGR01192 chvA glucan exporter 100.0 5.6E-38 1.2E-42 382.5 20.8 213 463-702 334-554 (585)
208 TIGR02982 heterocyst_DevA ABC 100.0 2E-37 4.4E-42 331.9 22.5 211 464-695 2-219 (220)
209 PRK10762 D-ribose transporter 100.0 2E-37 4.4E-42 371.6 25.2 220 463-704 4-228 (501)
210 cd03213 ABCG_EPDR ABCG transpo 100.0 3.2E-37 6.9E-42 323.3 23.1 190 463-699 3-194 (194)
211 PRK14239 phosphate transporter 100.0 4.1E-37 9E-42 336.7 24.6 216 463-702 5-232 (252)
212 PRK14240 phosphate transporter 100.0 5.1E-37 1.1E-41 335.5 25.2 215 463-701 3-229 (250)
213 PRK14270 phosphate ABC transpo 100.0 3.2E-37 7E-42 337.2 23.5 216 463-702 4-231 (251)
214 PRK14272 phosphate ABC transpo 100.0 6.6E-37 1.4E-41 335.1 25.7 217 463-702 4-232 (252)
215 PRK09700 D-allose transporter 100.0 2.4E-37 5.3E-42 372.0 24.4 219 463-703 5-231 (510)
216 PRK14260 phosphate ABC transpo 100.0 3.6E-37 7.7E-42 338.2 23.6 217 463-702 7-239 (259)
217 COG1123 ATPase components of v 100.0 2E-37 4.4E-42 355.7 22.4 227 462-701 279-514 (539)
218 PRK11701 phnK phosphonate C-P 100.0 3.5E-37 7.5E-42 338.2 23.3 215 463-701 6-236 (258)
219 PRK14253 phosphate ABC transpo 100.0 5.5E-37 1.2E-41 335.0 24.7 215 463-701 3-228 (249)
220 TIGR02857 CydD thiol reductant 100.0 6.7E-38 1.4E-42 379.2 19.0 234 416-689 286-529 (529)
221 PRK14244 phosphate ABC transpo 100.0 6.1E-37 1.3E-41 335.0 24.7 219 464-701 6-232 (251)
222 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4E-37 8.7E-42 330.0 22.8 192 487-699 33-224 (224)
223 PRK10247 putative ABC transpor 100.0 2.7E-37 5.9E-42 331.8 21.4 211 463-701 7-222 (225)
224 COG4161 ArtP ABC-type arginine 100.0 1.5E-37 3.2E-42 295.4 16.9 216 463-702 2-226 (242)
225 PRK13543 cytochrome c biogenes 100.0 3.9E-37 8.6E-42 328.0 22.3 201 463-690 11-211 (214)
226 TIGR02204 MsbA_rel ABC transpo 100.0 9E-38 1.9E-42 382.3 19.6 250 416-702 300-559 (576)
227 PRK14262 phosphate ABC transpo 100.0 9.6E-37 2.1E-41 333.3 25.1 214 464-701 4-229 (250)
228 TIGR02770 nickel_nikD nickel i 100.0 5E-37 1.1E-41 331.1 22.4 201 491-701 1-210 (230)
229 PRK10419 nikE nickel transport 100.0 8.3E-37 1.8E-41 336.5 24.3 225 464-703 4-238 (268)
230 PLN03130 ABC transporter C fam 100.0 9.4E-38 2E-42 412.6 20.0 250 417-703 1199-1458(1622)
231 PRK10418 nikD nickel transport 100.0 8.9E-37 1.9E-41 334.1 24.2 213 463-701 4-225 (254)
232 CHL00131 ycf16 sulfate ABC tra 100.0 1.3E-36 2.9E-41 332.7 25.5 221 463-702 7-237 (252)
233 PRK15056 manganese/iron transp 100.0 5E-37 1.1E-41 339.2 22.3 220 462-703 5-227 (272)
234 PRK14236 phosphate transporter 100.0 9.3E-37 2E-41 337.0 24.4 215 463-701 25-251 (272)
235 PLN03232 ABC transporter C fam 100.0 8.9E-38 1.9E-42 413.1 19.3 249 417-702 1196-1454(1495)
236 TIGR02633 xylG D-xylose ABC tr 100.0 8.3E-37 1.8E-41 366.7 25.6 220 464-703 2-227 (500)
237 PRK14251 phosphate ABC transpo 100.0 1.2E-36 2.5E-41 332.8 24.5 215 463-701 4-230 (251)
238 cd03252 ABCC_Hemolysin The ABC 100.0 1.7E-37 3.6E-42 336.6 17.5 209 465-701 2-220 (237)
239 cd03231 ABC_CcmA_heme_exporter 100.0 5.9E-37 1.3E-41 323.4 21.0 195 465-689 2-198 (201)
240 PRK14271 phosphate ABC transpo 100.0 1.4E-36 3.1E-41 335.7 24.9 220 463-702 21-247 (276)
241 PRK14249 phosphate ABC transpo 100.0 1.5E-36 3.3E-41 331.9 24.7 216 463-702 4-231 (251)
242 PRK14261 phosphate ABC transpo 100.0 1.4E-36 3E-41 332.6 24.4 215 463-701 6-232 (253)
243 PRK14258 phosphate ABC transpo 100.0 1.2E-36 2.7E-41 334.2 24.0 218 463-702 7-241 (261)
244 PRK13538 cytochrome c biogenes 100.0 7.2E-37 1.6E-41 323.6 21.4 199 464-689 2-202 (204)
245 PRK15439 autoinducer 2 ABC tra 100.0 7E-37 1.5E-41 367.2 23.9 212 463-703 11-226 (510)
246 PRK14275 phosphate ABC transpo 100.0 1.4E-36 3.1E-41 337.4 24.5 216 462-701 38-265 (286)
247 PRK14248 phosphate ABC transpo 100.0 1.6E-36 3.4E-41 334.8 24.7 215 463-701 21-247 (268)
248 COG1129 MglA ABC-type sugar tr 100.0 1.2E-36 2.7E-41 347.2 24.5 230 463-714 8-244 (500)
249 PRK14255 phosphate ABC transpo 100.0 2.3E-36 4.9E-41 330.8 25.2 215 463-701 5-231 (252)
250 PRK14265 phosphate ABC transpo 100.0 1.6E-36 3.5E-41 335.1 23.8 217 461-702 18-254 (274)
251 PRK11288 araG L-arabinose tran 100.0 1.3E-36 2.7E-41 364.8 24.7 217 463-701 4-224 (501)
252 COG1123 ATPase components of v 100.0 1.3E-36 2.7E-41 349.2 23.4 224 463-702 5-240 (539)
253 PRK13546 teichoic acids export 100.0 2.6E-36 5.7E-41 330.4 24.7 221 461-703 2-229 (264)
254 PRK10982 galactose/methyl gala 100.0 1.2E-36 2.6E-41 364.3 24.0 207 488-703 10-220 (491)
255 PRK14254 phosphate ABC transpo 100.0 3.4E-36 7.3E-41 334.1 25.8 213 463-701 39-264 (285)
256 PRK14238 phosphate transporter 100.0 2.4E-36 5.3E-41 333.3 24.4 215 463-701 24-250 (271)
257 PRK03695 vitamin B12-transport 100.0 1.2E-36 2.7E-41 331.4 21.8 198 491-702 11-218 (248)
258 TIGR02323 CP_lyasePhnK phospho 100.0 2.3E-36 5E-41 330.9 23.8 215 463-701 3-233 (253)
259 TIGR01166 cbiO cobalt transpor 100.0 1.4E-36 2.9E-41 318.0 20.1 179 488-676 4-188 (190)
260 PRK14263 phosphate ABC transpo 100.0 4.2E-36 9.2E-41 329.4 24.8 219 463-702 8-241 (261)
261 TIGR00957 MRP_assoc_pro multi 100.0 4.2E-37 9.2E-42 407.2 20.0 250 416-702 1245-1504(1522)
262 PRK13539 cytochrome c biogenes 100.0 1.7E-36 3.8E-41 321.3 20.6 197 464-690 3-199 (207)
263 cd03251 ABCC_MsbA MsbA is an e 100.0 6.9E-37 1.5E-41 331.2 17.8 209 465-701 2-220 (234)
264 cd03230 ABC_DR_subfamily_A Thi 100.0 1.6E-36 3.5E-41 312.2 19.6 169 465-694 2-172 (173)
265 PRK14243 phosphate transporter 100.0 2.6E-36 5.7E-41 332.0 22.4 214 463-701 10-243 (264)
266 cd03254 ABCC_Glucan_exporter_l 100.0 7.5E-37 1.6E-41 329.8 17.8 210 463-701 2-221 (229)
267 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-36 2.6E-41 326.1 19.2 209 464-699 3-220 (220)
268 COG5265 ATM1 ABC-type transpor 100.0 1.3E-37 2.9E-42 338.0 11.6 254 417-702 226-482 (497)
269 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 8.4E-37 1.8E-41 331.4 17.7 210 465-701 2-221 (238)
270 TIGR01189 ccmA heme ABC export 100.0 2.3E-36 4.9E-41 318.4 20.4 194 465-688 2-197 (198)
271 PRK09580 sufC cysteine desulfu 100.0 5.4E-36 1.2E-40 327.1 23.9 220 464-702 2-231 (248)
272 PRK14266 phosphate ABC transpo 100.0 6.3E-36 1.4E-40 326.8 23.9 215 463-701 3-229 (250)
273 PRK14246 phosphate ABC transpo 100.0 4.8E-36 1E-40 328.2 23.0 215 463-702 10-237 (257)
274 COG4619 ABC-type uncharacteriz 100.0 2.6E-37 5.6E-42 296.3 11.0 199 482-695 9-212 (223)
275 COG4604 CeuD ABC-type enteroch 100.0 4.4E-37 9.5E-42 302.5 12.6 207 487-703 12-222 (252)
276 PRK10261 glutathione transport 100.0 4.3E-36 9.4E-41 367.5 24.5 227 463-702 313-549 (623)
277 PRK13540 cytochrome c biogenes 100.0 2.7E-36 5.8E-41 318.3 19.3 194 464-687 2-197 (200)
278 PRK13545 tagH teichoic acids e 100.0 8.1E-36 1.8E-40 344.0 24.2 209 463-703 21-229 (549)
279 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.1E-36 4.5E-41 332.3 18.4 211 463-703 2-222 (275)
280 PRK14252 phosphate ABC transpo 100.0 1.3E-35 2.8E-40 327.0 24.3 216 462-701 15-244 (265)
281 cd03229 ABC_Class3 This class 100.0 3.6E-36 7.7E-41 311.2 18.5 171 465-694 2-178 (178)
282 PRK13549 xylose transporter AT 100.0 1.1E-35 2.3E-40 357.3 25.3 224 463-704 259-492 (506)
283 PRK10261 glutathione transport 100.0 5.5E-36 1.2E-40 366.5 23.3 220 463-702 12-254 (623)
284 TIGR02324 CP_lyasePhnL phospho 100.0 8.2E-36 1.8E-40 320.5 21.8 210 464-690 2-223 (224)
285 cd03253 ABCC_ATM1_transporter 100.0 2.6E-36 5.5E-41 327.2 17.9 210 465-701 2-219 (236)
286 TIGR03269 met_CoM_red_A2 methy 100.0 6.7E-36 1.4E-40 360.4 23.4 215 465-702 2-254 (520)
287 PTZ00243 ABC transporter; Prov 100.0 1.9E-36 4.2E-41 399.7 19.7 212 462-702 1307-1529(1560)
288 cd03248 ABCC_TAP TAP, the Tran 100.0 2.2E-36 4.7E-41 325.4 16.2 210 463-694 11-225 (226)
289 PRK14264 phosphate ABC transpo 100.0 2.2E-35 4.8E-40 330.7 24.8 222 463-702 45-285 (305)
290 cd03244 ABCC_MRP_domain2 Domai 100.0 5.7E-36 1.2E-40 321.1 19.0 208 464-700 3-220 (221)
291 PRK09544 znuC high-affinity zi 100.0 1E-35 2.2E-40 324.1 21.1 199 463-702 4-205 (251)
292 COG3845 ABC-type uncharacteriz 100.0 3E-35 6.5E-40 328.0 25.1 252 463-736 4-262 (501)
293 cd03215 ABC_Carb_Monos_II This 100.0 9E-36 2E-40 309.3 19.6 171 463-694 4-181 (182)
294 PRK09700 D-allose transporter 100.0 9.8E-36 2.1E-40 358.1 22.9 215 463-701 265-493 (510)
295 PRK15134 microcin C ABC transp 100.0 1.8E-35 4E-40 357.1 24.9 222 463-702 5-242 (529)
296 PRK10522 multidrug transporter 100.0 1.6E-35 3.5E-40 359.0 23.8 241 416-700 288-532 (547)
297 PRK15134 microcin C ABC transp 100.0 1.4E-35 3E-40 358.1 23.0 226 463-701 275-510 (529)
298 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-35 3E-40 357.7 22.5 218 463-701 279-512 (520)
299 PTZ00265 multidrug resistance 100.0 9.4E-36 2E-40 390.1 22.7 248 416-691 347-654 (1466)
300 TIGR03771 anch_rpt_ABC anchore 100.0 2.6E-35 5.7E-40 315.9 22.0 195 497-703 1-198 (223)
301 cd03246 ABCC_Protease_Secretio 100.0 9.1E-36 2E-40 306.7 17.6 168 465-694 2-172 (173)
302 cd03247 ABCC_cytochrome_bd The 100.0 9.9E-36 2.1E-40 308.0 17.6 175 465-699 2-178 (178)
303 COG4148 ModC ABC-type molybdat 100.0 1.9E-36 4.2E-41 312.7 12.0 191 494-702 16-214 (352)
304 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.8E-35 6.1E-40 356.9 24.1 255 415-698 292-551 (555)
305 TIGR02633 xylG D-xylose ABC tr 100.0 3.5E-35 7.5E-40 352.7 24.5 222 463-702 257-488 (500)
306 COG4172 ABC-type uncharacteriz 100.0 3.5E-35 7.6E-40 316.6 21.3 229 461-702 274-512 (534)
307 PRK11288 araG L-arabinose tran 100.0 3E-35 6.4E-40 352.9 23.1 206 490-704 267-483 (501)
308 PRK10762 D-ribose transporter 100.0 4E-35 8.6E-40 351.9 24.1 204 491-703 267-481 (501)
309 cd03214 ABC_Iron-Siderophores_ 100.0 1.3E-35 2.9E-40 307.4 17.3 165 489-699 12-180 (180)
310 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.2E-35 9.1E-40 308.9 20.9 183 465-701 2-189 (200)
311 cd03369 ABCC_NFT1 Domain 2 of 100.0 4E-35 8.8E-40 311.2 20.8 198 463-700 6-206 (207)
312 PRK10938 putative molybdenum t 100.0 2.8E-35 6E-40 352.7 21.1 207 463-702 3-220 (490)
313 cd03288 ABCC_SUR2 The SUR doma 100.0 1.1E-35 2.3E-40 325.9 16.1 211 463-702 19-239 (257)
314 COG0396 sufC Cysteine desulfur 100.0 4.2E-34 9.1E-39 290.0 24.3 228 463-715 3-238 (251)
315 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-34 2.4E-39 348.2 23.6 204 491-703 278-489 (510)
316 PRK13541 cytochrome c biogenes 100.0 9.5E-35 2.1E-39 305.2 19.7 191 464-686 2-192 (195)
317 TIGR01271 CFTR_protein cystic 100.0 8.7E-35 1.9E-39 384.1 23.9 211 462-702 1216-1436(1490)
318 COG1119 ModF ABC-type molybden 100.0 8.7E-35 1.9E-39 298.9 18.4 217 462-700 30-256 (257)
319 cd03223 ABCD_peroxisomal_ALDP 100.0 1.1E-34 2.4E-39 296.2 18.9 164 465-694 2-165 (166)
320 TIGR01187 potA spermidine/putr 100.0 1.1E-34 2.4E-39 327.5 20.7 184 507-702 1-186 (325)
321 cd03216 ABC_Carb_Monos_I This 100.0 1.6E-34 3.5E-39 294.1 19.2 157 465-697 2-162 (163)
322 KOG0059 Lipid exporter ABCA1 a 100.0 1.8E-33 3.9E-38 354.5 32.1 455 218-712 319-789 (885)
323 cd03250 ABCC_MRP_domain1 Domai 100.0 8.1E-35 1.8E-39 308.1 16.5 195 465-694 2-204 (204)
324 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.8E-34 1E-38 309.6 21.3 200 491-715 9-216 (246)
325 cd03290 ABCC_SUR1_N The SUR do 100.0 2.8E-34 6E-39 307.3 19.0 188 489-693 14-217 (218)
326 cd03228 ABCC_MRP_Like The MRP 100.0 2.3E-34 5E-39 295.7 17.1 166 465-693 2-170 (171)
327 PRK10535 macrolide transporter 100.0 1.2E-33 2.6E-38 347.1 25.9 218 463-702 4-228 (648)
328 COG4586 ABC-type uncharacteriz 100.0 2E-34 4.4E-39 297.6 15.9 202 489-702 37-242 (325)
329 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.3E-33 2.7E-38 311.4 22.8 198 462-702 38-243 (282)
330 COG4674 Uncharacterized ABC-ty 100.0 1.6E-34 3.4E-39 284.1 13.1 216 463-702 5-231 (249)
331 KOG0054 Multidrug resistance-a 100.0 2.9E-32 6.3E-37 341.7 36.9 249 417-702 1100-1358(1381)
332 PRK10982 galactose/methyl gala 100.0 1.5E-33 3.2E-38 337.7 23.5 216 463-702 250-476 (491)
333 COG4608 AppF ABC-type oligopep 100.0 8.4E-34 1.8E-38 298.5 18.0 189 463-702 4-195 (268)
334 PLN03232 ABC transporter C fam 100.0 4.1E-34 8.8E-39 378.4 19.6 238 416-703 580-825 (1495)
335 PRK15177 Vi polysaccharide exp 100.0 1E-33 2.3E-38 300.9 17.5 186 491-702 2-188 (213)
336 PLN03130 ABC transporter C fam 100.0 1E-33 2.3E-38 374.4 20.2 237 416-703 580-825 (1622)
337 PRK10938 putative molybdenum t 100.0 1.9E-33 4.1E-38 336.9 20.4 215 463-699 260-485 (490)
338 PRK15064 ABC transporter ATP-b 100.0 3.3E-33 7E-38 337.6 21.2 206 464-702 2-238 (530)
339 COG1101 PhnK ABC-type uncharac 100.0 5.2E-33 1.1E-37 277.8 18.9 220 487-715 17-251 (263)
340 TIGR00954 3a01203 Peroxysomal 100.0 1.9E-33 4.1E-38 345.7 19.0 199 463-693 451-655 (659)
341 PRK11819 putative ABC transpor 100.0 5.4E-33 1.2E-37 336.8 22.7 207 463-702 6-246 (556)
342 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.5E-33 1.2E-37 302.4 18.6 193 490-702 15-223 (255)
343 PRK13409 putative ATPase RIL; 100.0 1.6E-32 3.6E-37 331.2 23.7 211 463-715 340-554 (590)
344 PRK15064 ABC transporter ATP-b 100.0 1.2E-32 2.6E-37 332.7 21.0 199 462-701 318-520 (530)
345 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.5E-32 5.5E-37 331.0 22.9 207 463-702 4-244 (552)
346 cd03222 ABC_RNaseL_inhibitor T 100.0 2.5E-32 5.5E-37 279.4 18.8 157 488-714 12-171 (177)
347 PRK11819 putative ABC transpor 100.0 2.5E-32 5.4E-37 331.0 21.9 202 462-700 323-527 (556)
348 COG4172 ABC-type uncharacteriz 100.0 3E-32 6.4E-37 294.0 19.8 225 463-702 6-243 (534)
349 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.8E-32 6E-37 330.6 22.1 201 463-700 322-525 (552)
350 COG1134 TagH ABC-type polysacc 100.0 8.6E-32 1.9E-36 277.5 21.7 205 486-715 37-241 (249)
351 COG4136 ABC-type uncharacteriz 100.0 1.2E-32 2.6E-37 259.2 13.4 181 487-676 13-196 (213)
352 cd03238 ABC_UvrA The excision 100.0 7.7E-32 1.7E-36 275.6 18.1 154 488-691 7-163 (176)
353 TIGR00957 MRP_assoc_pro multi 100.0 4.2E-32 9.2E-37 359.8 20.2 244 416-703 599-847 (1522)
354 COG4133 CcmA ABC-type transpor 100.0 5.4E-32 1.2E-36 266.2 15.4 178 486-676 12-191 (209)
355 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1E-31 2.3E-36 267.3 17.0 143 465-694 2-144 (144)
356 COG4167 SapF ABC-type antimicr 100.0 9.7E-32 2.1E-36 260.9 15.6 204 488-702 25-235 (267)
357 PRK10636 putative ABC transpor 100.0 2.6E-31 5.7E-36 325.6 21.3 199 462-702 311-513 (638)
358 PRK11147 ABC transporter ATPas 100.0 3.3E-31 7.1E-36 325.6 21.6 202 462-700 318-522 (635)
359 TIGR01271 CFTR_protein cystic 100.0 1.4E-30 2.9E-35 344.4 24.0 189 489-703 439-633 (1490)
360 PRK10636 putative ABC transpor 100.0 1E-30 2.2E-35 320.3 20.9 204 464-701 2-231 (638)
361 PLN03073 ABC transporter F fam 100.0 1.8E-30 4E-35 318.7 22.3 201 462-701 507-709 (718)
362 KOG0054 Multidrug resistance-a 100.0 3.7E-30 7.9E-35 323.0 22.1 239 417-703 483-728 (1381)
363 PRK11147 ABC transporter ATPas 100.0 3.9E-30 8.5E-35 316.1 21.5 204 463-701 3-238 (635)
364 PRK13409 putative ATPase RIL; 100.0 1.5E-30 3.2E-35 314.2 17.5 180 489-690 87-285 (590)
365 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.2E-30 9.2E-35 260.4 17.4 141 489-691 12-155 (157)
366 COG4107 PhnK ABC-type phosphon 100.0 3.6E-30 7.8E-35 248.1 13.5 200 488-702 18-237 (258)
367 COG0488 Uup ATPase components 100.0 3.5E-29 7.7E-34 294.3 18.7 206 463-701 3-235 (530)
368 PTZ00243 ABC transporter; Prov 100.0 3.2E-29 7E-34 331.5 18.8 197 487-703 671-867 (1560)
369 cd03270 ABC_UvrA_I The excisio 100.0 1.5E-28 3.3E-33 263.7 19.9 191 488-699 7-226 (226)
370 PLN03073 ABC transporter F fam 100.0 6.1E-29 1.3E-33 305.3 16.1 216 462-701 176-426 (718)
371 COG4778 PhnL ABC-type phosphon 100.0 1.1E-28 2.5E-33 237.1 11.7 194 488-691 23-227 (235)
372 cd03271 ABC_UvrA_II The excisi 100.0 8.1E-28 1.8E-32 260.4 19.8 197 489-701 8-261 (261)
373 PF00005 ABC_tran: ABC transpo 100.0 1.2E-28 2.7E-33 243.7 11.8 134 492-644 1-137 (137)
374 cd03278 ABC_SMC_barmotin Barmo 99.9 3.9E-27 8.5E-32 246.8 11.7 168 493-693 14-192 (197)
375 COG0488 Uup ATPase components 99.9 3.1E-26 6.7E-31 269.4 18.2 200 460-700 318-519 (530)
376 COG1129 MglA ABC-type sugar tr 99.9 1.1E-25 2.4E-30 257.6 22.0 202 491-701 274-485 (500)
377 COG4138 BtuD ABC-type cobalami 99.9 1.6E-26 3.6E-31 223.2 6.8 195 491-703 14-218 (248)
378 COG4178 ABC-type uncharacteriz 99.9 4E-25 8.7E-30 257.6 17.1 198 461-691 390-588 (604)
379 COG4615 PvdE ABC-type sideroph 99.9 9.3E-26 2E-30 243.0 10.8 241 415-700 287-531 (546)
380 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.2E-25 9.1E-30 240.5 13.8 188 487-690 13-234 (243)
381 cd03274 ABC_SMC4_euk Eukaryoti 99.9 8.9E-26 1.9E-30 239.2 3.8 179 487-691 15-204 (212)
382 cd03240 ABC_Rad50 The catalyti 99.9 1.2E-24 2.7E-29 229.4 11.6 167 496-694 17-200 (204)
383 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.1E-24 2.4E-29 238.0 10.5 179 502-690 25-242 (251)
384 PRK00635 excinuclease ABC subu 99.9 2.3E-23 4.9E-28 268.9 21.8 136 560-703 759-903 (1809)
385 cd03279 ABC_sbcCD SbcCD and ot 99.9 7.5E-24 1.6E-28 225.5 14.4 180 493-693 18-210 (213)
386 COG3845 ABC-type uncharacteriz 99.9 7.1E-23 1.5E-27 229.4 19.9 222 461-703 255-489 (501)
387 KOG0927 Predicted transporter 99.9 2.9E-23 6.2E-28 232.9 10.6 201 462-701 388-591 (614)
388 PRK00349 uvrA excinuclease ABC 99.9 1.9E-22 4E-27 251.3 19.0 124 563-702 791-923 (943)
389 TIGR00630 uvra excinuclease AB 99.9 1.2E-21 2.5E-26 243.8 18.9 124 563-702 789-921 (924)
390 KOG0060 Long-chain acyl-CoA tr 99.9 5.7E-22 1.2E-26 224.1 14.6 207 461-693 431-643 (659)
391 KOG0927 Predicted transporter 99.9 7.7E-22 1.7E-26 221.5 13.1 212 463-702 75-305 (614)
392 COG4170 SapD ABC-type antimicr 99.9 5.1E-22 1.1E-26 197.2 9.9 212 487-702 18-244 (330)
393 COG1245 Predicted ATPase, RNas 99.9 2.2E-21 4.7E-26 213.2 14.7 196 492-715 357-556 (591)
394 cd03275 ABC_SMC1_euk Eukaryoti 99.8 2E-21 4.2E-26 211.8 9.9 179 504-693 24-235 (247)
395 cd03276 ABC_SMC6_euk Eukaryoti 99.8 8.5E-21 1.8E-25 199.1 13.2 166 492-691 12-190 (198)
396 PF01061 ABC2_membrane: ABC-2 99.8 1.2E-21 2.6E-26 207.6 1.7 208 143-355 1-210 (210)
397 KOG0066 eIF2-interacting prote 99.8 3.7E-20 8E-25 201.0 12.6 187 487-701 598-786 (807)
398 KOG2355 Predicted ABC-type tra 99.8 1.5E-19 3.3E-24 179.5 14.0 206 462-701 12-232 (291)
399 PF01061 ABC2_membrane: ABC-2 99.8 3E-21 6.5E-26 204.5 1.1 209 789-1003 1-210 (210)
400 KOG0062 ATPase component of AB 99.8 3.3E-20 7.2E-25 207.4 8.6 185 487-700 91-279 (582)
401 cd03280 ABC_MutS2 MutS2 homolo 99.8 3.2E-19 6.9E-24 188.1 10.6 147 491-699 16-172 (200)
402 KOG0064 Peroxisomal long-chain 99.8 3.2E-19 7E-24 198.7 10.1 181 489-689 495-681 (728)
403 COG1245 Predicted ATPase, RNas 99.8 6.5E-19 1.4E-23 193.9 11.4 168 499-690 97-287 (591)
404 KOG0062 ATPase component of AB 99.8 1.3E-18 2.9E-23 194.7 13.9 198 461-696 360-558 (582)
405 cd03239 ABC_SMC_head The struc 99.8 2.5E-18 5.4E-23 177.1 14.5 74 616-691 95-172 (178)
406 COG2401 ABC-type ATPase fused 99.8 1.4E-18 3.1E-23 188.7 12.9 182 487-692 394-585 (593)
407 cd03277 ABC_SMC5_euk Eukaryoti 99.7 1.2E-17 2.6E-22 177.2 14.7 79 614-694 125-211 (213)
408 COG0178 UvrA Excinuclease ATPa 99.7 2E-17 4.3E-22 194.0 16.0 126 563-703 783-916 (935)
409 PRK00635 excinuclease ABC subu 99.7 3.6E-17 7.9E-22 212.1 19.0 125 563-702 1660-1792(1809)
410 cd03241 ABC_RecN RecN ATPase i 99.7 2.6E-17 5.7E-22 182.2 14.3 75 615-692 170-248 (276)
411 cd03283 ABC_MutS-like MutS-lik 99.7 9.7E-18 2.1E-22 175.9 9.3 135 489-676 14-149 (199)
412 cd03227 ABC_Class2 ABC-type Cl 99.7 2.2E-17 4.8E-22 168.0 10.2 75 615-691 77-155 (162)
413 cd03285 ABC_MSH2_euk MutS2 hom 99.7 4.3E-17 9.3E-22 173.9 8.9 152 489-700 17-175 (222)
414 PRK00349 uvrA excinuclease ABC 99.6 8.8E-16 1.9E-20 192.0 14.7 134 561-703 434-582 (943)
415 KOG0066 eIF2-interacting prote 99.6 7E-17 1.5E-21 175.7 4.2 201 487-700 275-493 (807)
416 TIGR00630 uvra excinuclease AB 99.6 1.2E-15 2.6E-20 190.4 15.0 133 562-702 433-579 (924)
417 cd03243 ABC_MutS_homologs The 99.6 3.1E-16 6.8E-21 165.6 8.1 83 615-701 91-174 (202)
418 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1.3E-15 2.8E-20 160.1 9.2 142 488-683 15-157 (204)
419 cd03242 ABC_RecF RecF is a rec 99.6 1.6E-14 3.5E-19 159.5 14.8 75 615-695 183-269 (270)
420 KOG0063 RNAse L inhibitor, ABC 99.6 1.1E-14 2.5E-19 159.2 11.3 177 489-690 349-531 (592)
421 cd03284 ABC_MutS1 MutS1 homolo 99.5 2.9E-13 6.2E-18 144.1 11.5 153 489-701 18-176 (216)
422 TIGR02858 spore_III_AA stage I 99.4 5.2E-13 1.1E-17 145.7 11.2 132 503-694 112-259 (270)
423 smart00534 MUTSac ATPase domai 99.4 2.7E-13 5.8E-18 141.1 5.6 69 614-685 60-130 (185)
424 TIGR01247 drrB daunorubicin re 99.4 5.2E-11 1.1E-15 129.1 21.6 198 151-352 1-203 (236)
425 PF02463 SMC_N: RecF/RecN/SMC 99.3 4.5E-12 9.7E-17 135.9 10.9 73 615-690 136-212 (220)
426 cd00820 PEPCK_HprK Phosphoenol 99.3 1.6E-12 3.4E-17 120.4 4.6 74 489-573 2-78 (107)
427 PRK00064 recF recombination pr 99.3 3.9E-11 8.5E-16 137.7 17.0 77 614-695 272-359 (361)
428 TIGR01069 mutS2 MutS2 family p 99.3 3.8E-12 8.3E-17 157.9 8.7 130 495-676 314-446 (771)
429 KOG0063 RNAse L inhibitor, ABC 99.3 6.8E-12 1.5E-16 137.8 9.2 166 499-690 97-287 (592)
430 cd03281 ABC_MSH5_euk MutS5 hom 99.3 1.2E-11 2.7E-16 131.3 10.4 59 618-676 93-155 (213)
431 TIGR01247 drrB daunorubicin re 99.3 2E-10 4.3E-15 124.6 20.0 204 797-1005 1-208 (236)
432 PTZ00132 GTP-binding nuclear p 99.2 2.6E-11 5.7E-16 129.5 8.4 45 619-663 156-205 (215)
433 cd01128 rho_factor Transcripti 99.2 9.2E-12 2E-16 134.5 4.3 86 602-695 117-211 (249)
434 cd03287 ABC_MSH3_euk MutS3 hom 99.2 1.1E-10 2.5E-15 124.1 10.4 133 489-676 18-155 (222)
435 TIGR01291 nodJ ABC-2 type tran 99.1 8.3E-09 1.8E-13 113.0 24.6 197 145-352 7-215 (253)
436 TIGR03861 phenyl_ABC_PedC alco 99.1 4.3E-09 9.4E-14 115.4 22.3 210 788-1001 1-220 (253)
437 COG0178 UvrA Excinuclease ATPa 99.1 9.2E-10 2E-14 130.4 17.3 146 562-715 427-590 (935)
438 TIGR00634 recN DNA repair prot 99.1 1E-10 2.2E-15 142.3 9.4 74 615-691 440-517 (563)
439 TIGR03062 pip_yhgE_Cterm YhgE/ 99.1 1.6E-09 3.4E-14 115.2 17.0 118 234-355 57-174 (208)
440 PHA02562 46 endonuclease subun 99.1 7.3E-11 1.6E-15 144.7 7.6 77 614-694 467-554 (562)
441 TIGR01291 nodJ ABC-2 type tran 99.1 7.5E-09 1.6E-13 113.4 22.4 210 791-1005 7-220 (253)
442 TIGR03861 phenyl_ABC_PedC alco 99.1 5.3E-09 1.1E-13 114.7 21.2 206 143-352 2-219 (253)
443 PRK10869 recombination and rep 99.1 1.7E-10 3.7E-15 139.0 10.1 74 615-691 430-507 (553)
444 TIGR00025 Mtu_efflux ABC trans 99.1 1E-08 2.2E-13 110.9 22.8 190 157-352 2-195 (232)
445 PRK00409 recombination and DNA 99.1 9.8E-11 2.1E-15 145.9 7.7 80 614-698 389-470 (782)
446 PRK08533 flagellar accessory p 99.1 6.9E-10 1.5E-14 119.4 12.9 151 497-690 19-184 (230)
447 PRK07721 fliI flagellum-specif 99.1 9.9E-10 2.1E-14 127.6 14.3 171 489-701 146-338 (438)
448 TIGR00618 sbcc exonuclease Sbc 99.1 3.8E-10 8.1E-15 147.1 11.4 77 614-691 949-1035(1042)
449 cd03286 ABC_MSH6_euk MutS6 hom 99.0 3.2E-10 7E-15 120.3 7.3 134 489-676 17-154 (218)
450 TIGR00025 Mtu_efflux ABC trans 99.0 4E-08 8.6E-13 106.3 20.6 195 803-1004 2-199 (232)
451 cd01124 KaiC KaiC is a circadi 99.0 4.9E-09 1.1E-13 109.3 12.4 77 614-690 70-163 (187)
452 PRK13695 putative NTPase; Prov 98.9 8E-10 1.7E-14 114.0 4.3 79 615-700 78-158 (174)
453 TIGR03062 pip_yhgE_Cterm YhgE/ 98.9 1.4E-08 3.1E-13 107.8 13.8 119 883-1005 58-176 (208)
454 PF13304 AAA_21: AAA domain; P 98.9 1.1E-09 2.3E-14 119.5 5.2 62 615-676 236-300 (303)
455 PRK03918 chromosome segregatio 98.9 3.4E-09 7.3E-14 137.0 10.0 76 614-691 787-868 (880)
456 TIGR00606 rad50 rad50. This fa 98.9 3.5E-09 7.5E-14 140.9 10.0 76 605-683 1191-1277(1311)
457 COG3910 Predicted ATPase [Gene 98.9 2.8E-08 6E-13 98.9 12.6 77 614-693 128-205 (233)
458 cd01120 RecA-like_NTPases RecA 98.8 7.7E-09 1.7E-13 104.6 9.0 62 616-677 68-139 (165)
459 PRK10246 exonuclease subunit S 98.8 7.2E-09 1.6E-13 134.4 10.6 75 614-690 948-1031(1047)
460 TIGR02788 VirB11 P-type DNA tr 98.8 1.2E-08 2.6E-13 114.9 10.2 142 494-702 136-277 (308)
461 PRK06793 fliI flagellum-specif 98.8 1.4E-08 3E-13 117.2 10.4 155 489-700 144-305 (432)
462 PRK15066 inner membrane transp 98.8 1.1E-06 2.4E-11 96.6 25.0 204 142-352 7-217 (257)
463 PRK01156 chromosome segregatio 98.8 1.2E-08 2.7E-13 131.6 10.7 80 613-694 799-888 (895)
464 PRK13830 conjugal transfer pro 98.8 4.3E-08 9.3E-13 123.9 14.9 69 630-700 649-727 (818)
465 PRK15066 inner membrane transp 98.8 7.8E-07 1.7E-11 97.8 22.6 211 787-1003 6-220 (257)
466 cd01131 PilT Pilus retraction 98.7 6.8E-08 1.5E-12 101.7 10.3 57 625-690 66-122 (198)
467 PRK06067 flagellar accessory p 98.7 3.1E-07 6.6E-12 99.5 15.4 162 490-690 12-186 (234)
468 TIGR03238 dnd_assoc_3 dnd syst 98.6 1.8E-08 3.9E-13 115.6 4.1 51 489-543 19-70 (504)
469 TIGR02168 SMC_prok_B chromosom 98.6 5.4E-08 1.2E-12 130.1 7.9 74 614-690 1088-1165(1179)
470 cd01125 repA Hexameric Replica 98.6 1.3E-07 2.8E-12 102.8 9.0 136 502-676 1-160 (239)
471 PRK06995 flhF flagellar biosyn 98.6 1.7E-07 3.6E-12 109.8 9.8 152 490-673 244-400 (484)
472 PRK02224 chromosome segregatio 98.5 1.6E-07 3.4E-12 121.5 9.3 76 614-691 780-868 (880)
473 TIGR02169 SMC_prok_A chromosom 98.5 1.8E-07 4E-12 124.9 7.9 75 614-691 1073-1151(1164)
474 smart00382 AAA ATPases associa 98.5 3.9E-06 8.5E-11 81.9 15.0 59 615-673 60-124 (148)
475 TIGR01248 drrC daunorubicin re 98.4 4.1E-06 8.8E-11 84.3 14.8 129 867-998 15-145 (152)
476 cd01130 VirB11-like_ATPase Typ 98.4 3E-07 6.6E-12 95.8 6.0 84 491-576 14-99 (186)
477 COG0842 ABC-type multidrug tra 98.4 2.1E-05 4.5E-10 87.0 21.0 199 154-354 43-248 (286)
478 TIGR00611 recf recF protein. A 98.4 5.6E-07 1.2E-11 103.4 7.1 59 615-676 275-342 (365)
479 TIGR01248 drrC daunorubicin re 98.3 5.4E-06 1.2E-10 83.4 12.3 128 221-351 17-146 (152)
480 TIGR02655 circ_KaiC circadian 98.3 7.9E-08 1.7E-12 114.9 -1.2 167 490-690 8-190 (484)
481 TIGR01420 pilT_fam pilus retra 98.3 1.9E-06 4.1E-11 98.5 10.1 57 625-690 187-243 (343)
482 PRK13891 conjugal transfer pro 98.3 1E-05 2.2E-10 103.0 16.7 54 626-680 680-734 (852)
483 TIGR01026 fliI_yscN ATPase Fli 98.3 7.9E-06 1.7E-10 95.5 13.9 172 489-701 151-343 (440)
484 PRK14079 recF recombination pr 98.3 1.8E-06 4E-11 98.8 8.0 74 615-697 263-345 (349)
485 COG0419 SbcC ATPase involved i 98.2 3.4E-06 7.3E-11 108.8 10.7 80 612-693 812-899 (908)
486 TIGR03881 KaiC_arch_4 KaiC dom 98.2 6E-07 1.3E-11 96.9 3.0 46 491-539 8-56 (229)
487 PRK05399 DNA mismatch repair p 98.2 2.7E-06 5.8E-11 107.9 9.1 137 490-685 596-738 (854)
488 PRK07196 fliI flagellum-specif 98.2 1.4E-06 3.1E-11 100.8 5.9 88 488-576 142-239 (434)
489 COG0842 ABC-type multidrug tra 98.1 0.00011 2.5E-09 81.1 18.5 200 803-1005 46-251 (286)
490 cd02023 UMPK Uridine monophosp 98.1 3.1E-06 6.7E-11 89.2 5.4 112 504-648 1-113 (198)
491 TIGR02680 conserved hypothetic 98.0 7.1E-06 1.5E-10 109.0 7.3 59 614-675 1246-1316(1353)
492 PLN03210 Resistant to P. syrin 98.0 1.5E-05 3.3E-10 105.4 9.9 45 494-539 199-243 (1153)
493 PRK06002 fliI flagellum-specif 98.0 1.1E-05 2.4E-10 93.5 7.3 68 489-559 153-230 (450)
494 PRK13898 type IV secretion sys 98.0 0.00012 2.7E-09 93.2 16.8 48 629-676 638-686 (800)
495 PRK09825 idnK D-gluconate kina 98.0 6E-06 1.3E-10 85.1 4.1 64 501-570 2-67 (176)
496 PF13555 AAA_29: P-loop contai 97.9 1.3E-05 2.7E-10 66.7 3.6 34 492-525 12-46 (62)
497 cd01122 GP4d_helicase GP4d_hel 97.9 9.3E-05 2E-09 82.0 11.6 37 489-525 17-53 (271)
498 TIGR00767 rho transcription te 97.8 1.9E-05 4.1E-10 89.7 5.8 81 419-527 102-193 (415)
499 TIGR03518 ABC_perm_GldF glidin 97.8 0.0013 2.9E-08 71.3 19.2 194 146-350 2-210 (240)
500 PF13558 SbcCD_C: Putative exo 97.8 4.3E-05 9.3E-10 69.5 6.1 46 615-660 32-90 (90)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-181 Score=1629.60 Aligned_cols=1030 Identities=48% Similarity=0.846 Sum_probs=932.7
Q ss_pred hHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHHHHHhhCCCCCCCCCChhHHHHhhcCchh
Q 043954 2 EVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVLQYFEDCGFRCPERKGIADFLQEVISKKD 81 (1045)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~~yF~~lG~~cp~~~npADf~~~i~~~~~ 81 (1045)
+.+|++||...+ +++++|||||+|+|++||+|+||++|++|||||++++++||+++||.||+++++|||++++++..+
T Consensus 301 k~lr~~a~~~~~--t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~ 378 (1391)
T KOG0065|consen 301 KALRQLAHITGA--TALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKD 378 (1391)
T ss_pred HHHHHHHhhhcc--eEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCcc
Confidence 357788876663 569999999999999999999999999999999999999999999999999999999999999777
Q ss_pred hhhhcccCCCCCCCCCHHHHHHHHHhcHhhhHHHHHhcCccccccccccccccCccccCHHHHHHHHHHHHHHHHhcChH
Q 043954 82 QAQYWRHNDIPYSYVSVDQFSQMFKESYLGKRLDEELSKPYDRSQCHKNALSFSKHALSKWELFQACMSRELLLMKRNSF 161 (1045)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~ 161 (1045)
+.+++.....+....+++++.+.|+++..++++.++++.+.++.++++.+...++|.++.|.|++.|++|+++.++||..
T Consensus 379 ~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~ 458 (1391)
T KOG0065|consen 379 QEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYF 458 (1391)
T ss_pred ccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCce
Confidence 77777776677777778999999999999999999999998887777777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCcccchhhHHH
Q 043954 162 VYVFKTAQLAITAIITMTVFIRTQMKLDLMHANFMMGSLYYAIVRLMTNGVAELSLTITRLPVVYRQRSFLLYSAWAYSL 241 (1045)
Q Consensus 162 ~~~~r~~~~i~~~li~G~if~~~~~~~~~~~~~~~~g~lF~~~~~~~~~~~~~i~~~~~er~vf~rE~~~g~Y~~~ay~l 241 (1045)
++..++++.+++|+++|++||++.. .+..+.+.|.|++||++++.+++++++++..+++||||+|||...+|+||||.+
T Consensus 459 ~~~~~~~~~~i~ali~gslF~~~~~-~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al 537 (1391)
T KOG0065|consen 459 YYVFKTVQLVIQALITGSLFYRTPM-STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEAL 537 (1391)
T ss_pred EEEhHHHHHHHHHHHHhhheeeccC-cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHH
Confidence 9999999999999999999998763 445578999999999999999999999999999999999999999999999999
Q ss_pred hHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhh
Q 043954 242 PASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTFQTMVIATTVGSLALVLMFLFG 321 (1045)
Q Consensus 242 A~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~~~~~~A~~i~~~~~~~~~lf~ 321 (1045)
|..++++|+.++.+++|++|+||++||+++|++||+++|+++++++++++++++++++++++..|+++|++.++...+++
T Consensus 538 ~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~ 617 (1391)
T KOG0065|consen 538 ASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYG 617 (1391)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeCCCCCCccchhhhhhChhHHHHHHHhhhccCCCcccccC------------C-C---ccccccceEeccCcc----
Q 043954 322 GFILPRSSLPPWLSWGFWISLMTYGEIGISLNEFLAPRWQKAI------------A-E---NTTIGRYTLTSHGLN---- 381 (1045)
Q Consensus 322 Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~nef~~~~~~~~~------------~-~---~~~~G~~~L~~~g~~---- 381 (1045)
||+||.++||+||+|++||||+.||||+++.|||++++|+|.. . | ..+.|..++...++.
T Consensus 618 Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~ 697 (1391)
T KOG0065|consen 618 GFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQY 697 (1391)
T ss_pred ceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEeccccccccc
Confidence 9999999999999999999999999999999999999999972 1 1 245789999888776
Q ss_pred -ccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhccccCCc-ccCCCCCCCCCCCCcc-cccCCccc
Q 043954 382 -FESYFYWISVAALIGFMILFDLGFILALTYLKPPKMSRAIISKERFSQLQGKE-DEESNRPAFPHTKSES-KISGMVLP 458 (1045)
Q Consensus 382 -~~~~~~w~~i~ili~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 458 (1045)
....|+|+++++++++.+++.+...+++.+.++....++....+|-.+....+ .......... ..... ..+++..+
T Consensus 698 ~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~ 776 (1391)
T KOG0065|consen 698 QYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGSSSEIEKL-DDSSHQEKNKMVLP 776 (1391)
T ss_pred ccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcccccccccc-ccccccccccccCC
Confidence 66788999999999999999999999999999877766665544432211110 0000000000 00001 12344555
Q ss_pred ccceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC
Q 043954 459 FEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVG 538 (1045)
Q Consensus 459 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~ 538 (1045)
..+..++++||.+.++.+-+.+..| +++++|+|||+.++||.++||||+||||||||||+|+||...|.++|+|++|
T Consensus 777 ~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~ 853 (1391)
T KOG0065|consen 777 FTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILIS 853 (1391)
T ss_pred CccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEEC
Confidence 5566777777777766655444333 6788999999999999999999999999999999999999888999999999
Q ss_pred CeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 539 GYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 539 g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
|.+.++..++|.+|||.|+|.|.+.+||||.|+|+|.+|+|.+++.+++.+.++++++.++|++++|.+||.+| +|||.
T Consensus 854 G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~ 932 (1391)
T KOG0065|consen 854 GFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLST 932 (1391)
T ss_pred CeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCH
Confidence 99988788999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNP-SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p-~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
+||||++||.+|+.|| .||+|||||||||++++..|++.+|++++.|+||+|++|||+.++++.||++++|++||++||
T Consensus 933 eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 933 EQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred HHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcchhHHHHHHhcCCCCCCCCCCCCcccceeeccccchhhhhhhhHHHHHhcCHHHHHHHHHHhhhcCCCCC-CCC
Q 043954 698 SGMLGRHSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPG-SKE 776 (1045)
Q Consensus 698 ~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~ 776 (1045)
.|+++++++++++||+++++. +|++..|||||++|+++...+.+.+.||++.|++|++++++++.++.++++.+. ..+
T Consensus 1013 ~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~ 1091 (1391)
T KOG0065|consen 1013 FGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTD 1091 (1391)
T ss_pred ecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcc
Confidence 999999999999999999775 678777999999999998888778889999999999999999999999888777 566
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 043954 777 LRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLIVILGSMYIAVIFLGV 856 (1045)
Q Consensus 777 ~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~ 856 (1045)
....++|++|+|.|++.++||+++.+||+|.|+.+|++..++.||++|+.||+.|+ +.++++|.+|++|+++++.+.
T Consensus 1092 ~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~ 1168 (1391)
T KOG0065|consen 1092 LEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGP 1168 (1391)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhh
Confidence 67778899999999999999999999999999999999999999999999999984 578999999999999999888
Q ss_pred HhhhhhhhhHHHhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHH
Q 043954 857 NYCSTVLPYVATERTVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLY 936 (1045)
Q Consensus 857 ~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~ 936 (1045)
.++....+.+..||.+++||+++|+||+.+|++|++++|+|+.++++++|.+++|+++|+.+++.+++||++.+++..++
T Consensus 1169 ~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lY 1248 (1391)
T KOG0065|consen 1169 NNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLY 1248 (1391)
T ss_pred hhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHH
Confidence 87766778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCcceeeccC--
Q 043954 937 FVYLGMFLVSVCPGVEIASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMNREILIFG-- 1014 (1045)
Q Consensus 937 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~~~~~~~~~~-- 1014 (1045)
.+.+|+++.+++||.++|+.+.+.+++++.+|||+++|++.||.||+|+||+||++|.++|++..+++|.+..|...+
T Consensus 1249 f~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~ 1328 (1391)
T KOG0065|consen 1249 FTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMN 1328 (1391)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988775433
Q ss_pred -----CCccHHHHHHhhcC----CccccccceeEEEEE
Q 043954 1015 -----EHKTVGSFLHDYYG----FHHDRLGLVAAVLIA 1043 (1045)
Q Consensus 1015 -----~~~~~~~~l~~~~g----~~~~~~~~~~~il~~ 1043 (1045)
..+|||+|+++++| |..|..-....+..+
T Consensus 1329 ~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~ 1366 (1391)
T KOG0065|consen 1329 YFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCA 1366 (1391)
T ss_pred ccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEee
Confidence 23799999999998 776655554444433
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.8e-175 Score=1688.35 Aligned_cols=1042 Identities=54% Similarity=1.005 Sum_probs=911.5
Q ss_pred ChHHHHHHH-cCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHHHHHhhCCCCCCCCCChhHHHHhhcCc
Q 043954 1 MEVIRKEKE-AGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVLQYFEDCGFRCPERKGIADFLQEVISK 79 (1045)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~~yF~~lG~~cp~~~npADf~~~i~~~ 79 (1045)
++.||++++ .|+ ++|+|+|||+++++++||+|++|++|+++|+||++++++||+++||+||+++|||||++|++++
T Consensus 376 ~~~Lr~la~~~g~---Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~ 452 (1470)
T PLN03140 376 VKCLQQIVHLTEA---TVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSK 452 (1470)
T ss_pred HHHHHHHHHhcCC---EEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCc
Confidence 357889987 477 5599999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhcccCCCCCCCCCHHHHHHHHHhcHhhhHHHHHhcCccccccccccccccCccccCHHHHHHHHHHHHHHHHhcC
Q 043954 80 KDQAQYWRHNDIPYSYVSVDQFSQMFKESYLGKRLDEELSKPYDRSQCHKNALSFSKHALSKWELFQACMSRELLLMKRN 159 (1045)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd 159 (1045)
+++++++.....|....+++++.++|+++..++++.++++.+.++...++.....++|..++|.|++.|++|++++.+||
T Consensus 453 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd 532 (1470)
T PLN03140 453 KDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRN 532 (1470)
T ss_pred hhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 66555554444454556789999999999988888777665543332222233345689999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccCCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCcccchhh
Q 043954 160 SFVYVFKTAQLAITAIITMTVFIRTQMKLD-LMHANFMMGSLYYAIVRLMTNGVAELSLTITRLPVVYRQRSFLLYSAWA 238 (1045)
Q Consensus 160 ~~~~~~r~~~~i~~~li~G~if~~~~~~~~-~~~~~~~~g~lF~~~~~~~~~~~~~i~~~~~er~vf~rE~~~g~Y~~~a 238 (1045)
+..+..|++|.+++|+++|++||+++.+.+ ..+.+.+.|++||++++++++++++++.++.+||||+|||++++|++++
T Consensus 533 ~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~a 612 (1470)
T PLN03140 533 AFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 612 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHH
Confidence 999999999999999999999998765432 2356778899999999999999999999999999999999999999999
Q ss_pred HHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Q 043954 239 YSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTFQTMVIATTVGSLALVLMF 318 (1045)
Q Consensus 239 y~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~~~~~~A~~i~~~~~~~~~ 318 (1045)
|++|++++|+|+.++++++|++|+|||+||++++++||+|++++++++++++++++++++++|++.+|+.++++++++++
T Consensus 613 y~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~ 692 (1470)
T PLN03140 613 FTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVF 692 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcceeCCCCCCccchhhhhhChhHHHHHHHhhhccCCCcccccC--CCccccccceEeccCccccccccchhhHHHHH
Q 043954 319 LFGGFILPRSSLPPWLSWGFWISLMTYGEIGISLNEFLAPRWQKAI--AENTTIGRYTLTSHGLNFESYFYWISVAALIG 396 (1045)
Q Consensus 319 lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~nef~~~~~~~~~--~~~~~~G~~~L~~~g~~~~~~~~w~~i~ili~ 396 (1045)
+|+||+||.++||+||+|++||||++|||||++.|||.+..|.+.. .++.+.|+.+|..+|+..+..|+|.+++++++
T Consensus 693 lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~ 772 (1470)
T PLN03140 693 LLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLG 772 (1470)
T ss_pred HHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHH
Confidence 9999999999999999999999999999999999999988775422 22456899999999998877889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccchhhhccccCCc--------cc---C---CC----C-C-C-----CCC---CCC
Q 043954 397 FMILFDLGFILALTYLKPPKMSRAIISKERFSQLQGKE--------DE---E---SN----R-P-A-----FPH---TKS 448 (1045)
Q Consensus 397 ~~l~~~~~~~l~l~~~~~~~~~~~~~~~~r~~~~~~~~--------~~---~---~~----~-~-~-----~~~---~~~ 448 (1045)
+.++|.++.++++.+..+....++..+.++..+..++. .+ . .. . . . ... ...
T Consensus 773 ~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (1470)
T PLN03140 773 FTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANG 852 (1470)
T ss_pred HHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999887533322222111111000000 00 0 00 0 0 0 000 000
Q ss_pred cccccCCcccccceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC
Q 043954 449 ESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG 528 (1045)
Q Consensus 449 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~ 528 (1045)
.....++.+|..+.+++|+||+|+++.+.+.++.+...+++++|+|||++++|||+++|+||||||||||||+|+|+.++
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~ 932 (1470)
T PLN03140 853 VAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 932 (1470)
T ss_pred cccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 01122344567788999999999998776544444444556899999999999999999999999999999999999876
Q ss_pred CeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 043954 529 GIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLV 608 (1045)
Q Consensus 529 ~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 608 (1045)
++.+|+|.+||++.....+++.+|||+|+|.+++.+||+|||.|++.++.+...++++++++++++++.++|.++.|+.+
T Consensus 933 g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~v 1012 (1470)
T PLN03140 933 GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV 1012 (1470)
T ss_pred CcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCcc
Confidence 67899999999886544556778999999999999999999999988877655666677788999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEE
Q 043954 609 GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLL 688 (1045)
Q Consensus 609 g~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~ 688 (1045)
|.++.++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++
T Consensus 1013 g~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140 1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1092 (1470)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEE
Confidence 98877899999999999999999999999999999999999999999999999988999999999998778899999999
Q ss_pred EecCcEEEEecCCCcchhHHHHHHhcCCCCCCCCCCCCcccceeeccccchhhhhhhhHHHHHhcCHHHHHHHHHHhhhc
Q 043954 689 MKAGGRIIYSGMLGRHSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLS 768 (1045)
Q Consensus 689 l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 768 (1045)
|++||+++|+|++++.++++.+||++++|.++||+++|||||++|+++.+.+.+.+.||++.|++|+.+++..+.+++++
T Consensus 1093 L~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~ 1172 (1470)
T PLN03140 1093 MKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELS 1172 (1470)
T ss_pred EcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhc
Confidence 98779999999998777899999999877777999999999999999876555556689999999999988877777665
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHH
Q 043954 769 EPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLIVILGSMY 848 (1045)
Q Consensus 769 ~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~~g~lf 848 (1045)
.+.+..+....++++++++|+|+++|++|+++++||||.++.+|+++.+++|+++|++||+++++..+.++++++.|++|
T Consensus 1173 ~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~ 1252 (1470)
T PLN03140 1173 TPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMY 1252 (1470)
T ss_pred cCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHH
Confidence 55444333344567899999999999999999999999999999999999999999999999987777789999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHH
Q 043954 849 IAVIFLGVNYCSTVLPYVATERTVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFY 928 (1045)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~ 928 (1045)
+++++.++.++.+++|.+..||++|+||+++|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++.+||+|++
T Consensus 1253 ~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~ 1332 (1470)
T PLN03140 1253 AAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYF 1332 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCcc
Q 043954 929 ATLCTFLYFVYLGMFLVSVCPGVEIASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMNR 1008 (1045)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~~~~ 1008 (1045)
+++++.++++++|+++++++|+.++|+.+++++++++++||||++|+++||+||+|+||+||++|+++|++.|||+|...
T Consensus 1333 ~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~ 1412 (1470)
T PLN03140 1333 ISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVED 1412 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeeccCC--CccHHHHHHhhcCCccccccceeEEEEEeC
Q 043954 1009 EILIFGE--HKTVGSFLHDYYGFHHDRLGLVAAVLIAFP 1045 (1045)
Q Consensus 1009 ~~~~~~~--~~~~~~~l~~~~g~~~~~~~~~~~il~~f~ 1045 (1045)
+|.++|. ..++.+|++++|||+++++|++++|+++|+
T Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~ 1451 (1470)
T PLN03140 1413 TIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFT 1451 (1470)
T ss_pred cccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHH
Confidence 7777762 367899999999999999999999999874
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-161 Score=1569.06 Aligned_cols=1020 Identities=29% Similarity=0.523 Sum_probs=853.7
Q ss_pred ChHHHHHHHc-CCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHHHHHhhCCCCCCCCCChhHHHHhhcCc
Q 043954 1 MEVIRKEKEA-GIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVLQYFEDCGFRCPERKGIADFLQEVISK 79 (1045)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~~yF~~lG~~cp~~~npADf~~~i~~~ 79 (1045)
++.||++++. |+ ++|+|+|||+++++++||+|++|++|+++|+||++++++||+++||+||+++|||||++|++++
T Consensus 249 ~~~L~~la~~~g~---tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~ 325 (1394)
T TIGR00956 249 IRALKTSANILDT---TPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSP 325 (1394)
T ss_pred HHHHHHHHHhcCC---EEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccCh
Confidence 3678999874 88 4599999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhcccCCCCCCCCCHHHHHHHHHhcHhhhHHHHHhcCccccc---------------cccccccccCccccCHHHH
Q 043954 80 KDQAQYWRHNDIPYSYVSVDQFSQMFKESYLGKRLDEELSKPYDRS---------------QCHKNALSFSKHALSKWEL 144 (1045)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~s~~~q 144 (1045)
+++. .+... +.....+.+++.++|++|..++++.++++.+.++. .+.+.....+++..|+|+|
T Consensus 326 ~~~~-~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 403 (1394)
T TIGR00956 326 AERQ-IKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQ 403 (1394)
T ss_pred hhhh-ccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHH
Confidence 5432 11111 11133568999999999998887776655432110 0011122335688999999
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 043954 145 FQACMSRELLLMKRNSFVYVFKTAQLAITAIITMTVFIRTQMKLDLMHANFMMGSLYYAIVRLMTNGVAELSLTITRLPV 224 (1045)
Q Consensus 145 ~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~if~~~~~~~~~~~~~~~~g~lF~~~~~~~~~~~~~i~~~~~er~v 224 (1045)
+++|++|++++.+|||..+.+|+++.+++|+++|++||++ +.++.+.+++.|++||++++++++++.+++.++.||+|
T Consensus 404 ~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~--~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i 481 (1394)
T TIGR00956 404 VKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNL--PKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPI 481 (1394)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCC--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999965 45667889999999999999999999999999999999
Q ss_pred hhhhhcCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchH
Q 043954 225 VYRQRSFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTFQTMV 304 (1045)
Q Consensus 225 f~rE~~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~~~~~ 304 (1045)
|+||+++++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|++++++++++++++++++++++||++
T Consensus 482 ~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~ 561 (1394)
T TIGR00956 482 VEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLS 561 (1394)
T ss_pred eeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhhhccCCCcccccC--C--------------C--
Q 043954 305 IATTVGSLALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISLNEFLAPRWQKAI--A--------------E-- 366 (1045)
Q Consensus 305 ~A~~i~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~nef~~~~~~~~~--~--------------~-- 366 (1045)
+|+.+++++++++++|+||+||.++||+||+|++||||++|||||++.|||++..++|.. | |
T Consensus 562 ~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~ 641 (1394)
T TIGR00956 562 EAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTV 641 (1394)
T ss_pred HHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccC
Confidence 999999999999999999999999999999999999999999999999999999888841 0 1
Q ss_pred -------ccccccceEeccCccccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhh--ccccCC----
Q 043954 367 -------NTTIGRYTLTSHGLNFESYFYWISVAALIGFMILFDLGFILALTYLKPPKMSRAIISKERF--SQLQGK---- 433 (1045)
Q Consensus 367 -------~~~~G~~~L~~~g~~~~~~~~w~~i~ili~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~r~--~~~~~~---- 433 (1045)
+.+.|+++|.. +++....++|.++++++++.++|.++.++++.+.++..........+|- ......
T Consensus 642 ~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1394)
T TIGR00956 642 VGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETS 720 (1394)
T ss_pred CCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeeccccccchhhccccc
Confidence 12356677764 4455567899999999999999999999999988754332222111110 000000
Q ss_pred cc---cCC--CC-CCCCCCCCccc-ccCCccc--ccceeEEEeceEEEEecCccccccccccccccccccccceecCceE
Q 043954 434 ED---EES--NR-PAFPHTKSESK-ISGMVLP--FEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGIL 504 (1045)
Q Consensus 434 ~~---~~~--~~-~~~~~~~~~~~-~~~~~~~--~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 504 (1045)
+. +.+ .. +..+.+..... ......+ .....++|+||+++++.+ .+++++|+|||++++|||+
T Consensus 721 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~ 791 (1394)
T TIGR00956 721 ASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTL 791 (1394)
T ss_pred ccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEE
Confidence 00 000 00 00000000000 0000001 112458999999987421 2346799999999999999
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCC
Q 043954 505 TALMGVSGAGKTTLMDVLSGRKTGG-IIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEID 583 (1045)
Q Consensus 505 ~~i~G~sGaGKSTLl~~l~G~~~~~-~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 583 (1045)
+||+||||||||||||+|+|+.+++ +.+|+|.+||++... .+++.++||+|++.+++.+||+||+.|++.++.+...+
T Consensus 792 ~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~ 870 (1394)
T TIGR00956 792 TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS 870 (1394)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999987643 467999999998743 46678999999999999999999999999888765566
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 043954 584 SETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPS-IIFMDEPTSGLDARAAAIVMRAVKNVV 662 (1045)
Q Consensus 584 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~-illLDEPtsgLD~~~~~~i~~~l~~l~ 662 (1045)
+++++++++++++.++|.+++|+.+|+++. +||||||||++||+||+.+|+ ||+|||||||||+.++..+++.|++++
T Consensus 871 ~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la 949 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLA 949 (1394)
T ss_pred HHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 777778899999999999999999997764 899999999999999999997 999999999999999999999999999
Q ss_pred HcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCcchhHHHHHHhcCCCCCCCCCCCCcccceeeccccchhhh
Q 043954 663 RTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAE 742 (1045)
Q Consensus 663 ~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~v~~~~~~~~ 742 (1045)
++|+|||+++|||+..+++.||++++|++||++++.|++++.++++.+||+.. |.++||+++|||||++|+++...+.+
T Consensus 950 ~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~ 1028 (1394)
T TIGR00956 950 DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAH 1028 (1394)
T ss_pred HcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccc
Confidence 88999999999999767789999999997679999999988778899999987 55579999999999999988654433
Q ss_pred hhhhHHHHHhcCHHHHHHHHHHhhhcCCCCCC---CCCCCCCCCCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHH
Q 043954 743 LGLDFAKIYLKSPLYQETIELVNRLSEPQPGS---KELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFA 819 (1045)
Q Consensus 743 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~ 819 (1045)
...|+.+.|++|+.+++..+.++....+.... ......++++.|+++|+++|++|+++++||||.++.+|+++++++
T Consensus 1029 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~ 1108 (1394)
T TIGR00956 1029 ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFA 1108 (1394)
T ss_pred hhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34689999999988877665554433221111 111122468899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhHHHH-HHHhcCCCCCHHHHHHHHHHHHHHH
Q 043954 820 ALLFGAVVWQKGKEINKEEDLIVILGSMYIAVIFLGVNYCSTVLPYVATERTVL-YREKFAGMYSPWAYSFAQVTIEIPY 898 (1045)
Q Consensus 820 ~li~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~l~~~p~ 898 (1045)
|+++|++||+++++ ..+++++.|++|+.+++.++. +...+|.++.||.+| +||+.+|+|++++|++|++++|+|+
T Consensus 1109 ~l~~G~~f~~~~~~---~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~ 1184 (1394)
T TIGR00956 1109 ALFIGFTFFKVGTS---LQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPY 1184 (1394)
T ss_pred HHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999864 578999999999888777665 345667788888886 8999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccccccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Q 043954 899 IMLHAIIYVAITYPAIGYYWSAYK-------VFWYFYATLCTFLYFVYLGMFLVSVCPGVEIASVLATAIYTILNLFSGF 971 (1045)
Q Consensus 899 ~~~~~~~f~~i~Y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~lf~G~ 971 (1045)
.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+++++++|+.++|+.+++++++++++||||
T Consensus 1185 ~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~ 1264 (1394)
T TIGR00956 1185 NLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGV 1264 (1394)
T ss_pred HHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988765 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCcceeec-------------------------------cC---CC-
Q 043954 972 LLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMNREILI-------------------------------FG---EH- 1016 (1045)
Q Consensus 972 ~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~~~~~~~~-------------------------------~~---~~- 1016 (1045)
++|+++||.||+|++|+||++|+++|++.|||+|.+.+|.. |+ .|
T Consensus 1265 ~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~ 1344 (1394)
T TIGR00956 1265 LAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCS 1344 (1394)
T ss_pred cCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCC
Confidence 99999999999999999999999999999999998765521 01 11
Q ss_pred ----ccHHHHHHhhcCCccccccceeEEEEEeC
Q 043954 1017 ----KTVGSFLHDYYGFHHDRLGLVAAVLIAFP 1045 (1045)
Q Consensus 1017 ----~~~~~~l~~~~g~~~~~~~~~~~il~~f~ 1045 (1045)
.++.+|+ ..+|++++++|+|++|+++|+
T Consensus 1345 yC~~~~~~~~l-~~~~~~~~~~w~~~~i~~~~~ 1376 (1394)
T TIGR00956 1345 FCQYSYTNDFL-EPISSKYSGRWRNFGIFIAFI 1376 (1394)
T ss_pred cCCCCCHHHHH-HHcCCcccccccchhhhhHHH
Confidence 1344554 458999999999999998874
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.3e-93 Score=870.98 Aligned_cols=566 Identities=26% Similarity=0.411 Sum_probs=464.8
Q ss_pred cceeEEEeceEEEEecCcc----------------ccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHh
Q 043954 460 EQLTMAFKDVRYFVDTPPA----------------MRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLS 523 (1045)
Q Consensus 460 ~~~~l~~~~l~~~~~~~~~----------------~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~ 523 (1045)
.+++++|.|++|+++.... .++.....+++++|+|||+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999864420 111122334578999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 043954 524 GRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI 603 (1045)
Q Consensus 524 G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~ 603 (1045)
|+.+++..+|+|.+||++.... .++.++||+|++.+++.+||+||+.+++.++.+...++++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876434689999999986532 345689999999999999999999998877765455566667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhc
Q 043954 604 KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAF 683 (1045)
Q Consensus 604 ~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 683 (1045)
.|+.+|+...++||||||||++|||+|+++|+||+|||||+|||+.++.++++.|++++++|+|||+++||++.++.+.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987677999999999999999999999999999999999999999999999999889999999999987788999
Q ss_pred ceEEEEecCcEEEEecCCCcchhHHHHHHhcCCCCCCCCCCCCcccceeeccccchhh---------hhhhhHHHHHhcC
Q 043954 684 DELLLMKAGGRIIYSGMLGRHSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEA---------ELGLDFAKIYLKS 754 (1045)
Q Consensus 684 d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~v~~~~~~~---------~~~~~~~~~~~~s 754 (1045)
|++++|+ +|++++.|+. +++.+||++++ . +||.++|||||++|+++.+.+. ....+..+.|++.
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999998 5899999986 57899999994 3 6999999999999998753210 0011233445421
Q ss_pred HHHHHHHHHHhh--hcCCCC------CCCCCC-CCCCCCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 043954 755 PLYQETIELVNR--LSEPQP------GSKELR-FPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGA 825 (1045)
Q Consensus 755 ~~~~~~~~~~~~--~~~~~~------~~~~~~-~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~li~G~ 825 (1045)
. .++..+..+. ...... ..+... ....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111110 000000 000000 11234578999999999999998 89999999999999999999999
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043954 826 VVWQKGKEINKEEDLIVILGSMYIAVIFLGVNYCSTVLPYVATERTVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAII 905 (1045)
Q Consensus 826 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~ 905 (1045)
+||+++ ..++++|.|++|+++++.++.+++..++.++.||++|+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999974 357899999999999998888777888999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 043954 906 YVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVSVCPGVEIASVLATAIYTILNLFSGFLLPGPKIPKWWIWC 985 (1045)
Q Consensus 906 f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~ 985 (1045)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hccCHHHHHHHHHHHHHhCCCcc-----eeeccC--CCccHHHHHHhhcCCccccccceeEEEEEe
Q 043954 986 YWICPTSWSLNGLLTSQYGDMNR-----EILIFG--EHKTVGSFLHDYYGFHHDRLGLVAAVLIAF 1044 (1045)
Q Consensus 986 ~~isp~~y~~~~l~~~ef~~~~~-----~~~~~~--~~~~~~~~l~~~~g~~~~~~~~~~~il~~f 1044 (1045)
+|+||++|++|+++.|||++.+. +|..+. ....| .++ ...+++....|.++++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c-~~~-~~~~~~~~~~~~~~~~l~~~ 642 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASC-KFV-EEDVAGQISPATSVSVLIFM 642 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCC-ccc-hhhhhcccchHHHHHHHHHH
Confidence 99999999999999999986542 332111 00111 111 22334455788888887665
No 5
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.7e-94 Score=865.00 Aligned_cols=560 Identities=32% Similarity=0.579 Sum_probs=484.4
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECC
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIQGEIRVGG 539 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~-~~~G~I~~~g 539 (1045)
.+.++|+|++++.+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+...+ ..+|+|++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 467899999998754321 3578999999999999999999999999999999999998764 6899999999
Q ss_pred eeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 540 YPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 540 ~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
++...+.+++.+|||.|+|.+++++||+|++.|++.+|+|.+.++++++++|+++++.+||.+++|+++|+.+.+++|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88777788899999999999999999999999999999999889999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|||||+||.+|++||+||+|||||||||+.++.++++.|++++++|+|||+++|||+.+++++||++++|.+ |+++|+|
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G 253 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSG 253 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 8999999
Q ss_pred CCCcchhHHHHHHhcCCCCCCCCCCCCcccceeeccccchhhhhhhhHHHH------HhcCHHHHHHHH-HHhhhcCCCC
Q 043954 700 MLGRHSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKI------YLKSPLYQETIE-LVNRLSEPQP 772 (1045)
Q Consensus 700 ~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~v~~~~~~~~~~~~~~~~------~~~s~~~~~~~~-~~~~~~~~~~ 772 (1045)
++ +++.+||++. |. +||++.|||||++|+.+.+...+...+..+. ++..+...+... ..+...+.
T Consensus 254 ~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 325 (613)
T KOG0061|consen 254 SP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS-- 325 (613)
T ss_pred CH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccc--
Confidence 97 5789999998 44 5999999999999998853100000111111 110111111110 00001000
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHH
Q 043954 773 GSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLIVILGSMYIAVI 852 (1045)
Q Consensus 773 ~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~ 852 (1045)
. ..+.....+||.|++.|++|.+++.+|||.+...|.++.+.+|+++|++||+++++ ..+++++.|++|+.+.
T Consensus 326 --~--~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~~ 398 (613)
T KOG0061|consen 326 --K--KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFILS 398 (613)
T ss_pred --c--ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHHH
Confidence 0 11111268999999999999999999999999999999999999999999999754 4567799999999999
Q ss_pred HHHHHhhhhhhhhHHHhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHH
Q 043954 853 FLGVNYCSTVLPYVATERTVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLC 932 (1045)
Q Consensus 853 ~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~ 932 (1045)
+..+..+...++.++.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++
T Consensus 399 ~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~ 478 (613)
T KOG0061|consen 399 FMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILL 478 (613)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCcceeec
Q 043954 933 TFLYFVYLGMFLVSVCPGVEIASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMNREILI 1012 (1045)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~~~~~~~~ 1012 (1045)
..+++.++|++++++.|+...|+.+++++++++++|+||+++.++||+||+|++|+|+++|++||++.|||++....|..
T Consensus 479 ~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~ 558 (613)
T KOG0061|consen 479 SSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFL 558 (613)
T ss_pred HHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999973333322
Q ss_pred cC--CCccHHHHHHhhcCCccccccceeEEEEEe
Q 043954 1013 FG--EHKTVGSFLHDYYGFHHDRLGLVAAVLIAF 1044 (1045)
Q Consensus 1013 ~~--~~~~~~~~l~~~~g~~~~~~~~~~~il~~f 1044 (1045)
.+ .+...++..+...+++.++.|.|+.+++++
T Consensus 559 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~ 592 (613)
T KOG0061|consen 559 SGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAF 592 (613)
T ss_pred CcCCcccccHHHHHHhcCCcccccchhHHHHHHH
Confidence 21 222334445566899999999998887654
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=8.1e-93 Score=865.82 Aligned_cols=548 Identities=28% Similarity=0.477 Sum_probs=479.4
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCcccccccceEeecCCccCCCCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~-~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 565 (1045)
+++++|+|+|++++|||+++|+||||||||||||+|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3578999999999999999999999999999999999987643 258999999998765566788999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPG-QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 644 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~LSgGqrqRv~ia~aL~~~p~illLDEPts 644 (1045)
|+|||.|++.++.+...++++++++++++++.+||.++.|+.+|+++ .++|||||||||+|||||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877666777788889999999999999999999764 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCcchhHHHHHHhcCCCCCCCCCC
Q 043954 645 GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIEYFQGISGVPQIKAN 724 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~ 724 (1045)
|||+.++..+++.|++++++|+|+|+++|||+.++++.||++++|+ +|+++|.|++ +++.+||++++ .+||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g--~~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG--HPCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC--CCCCCC
Confidence 9999999999999999998899999999999878999999999998 6999999997 57889999984 369999
Q ss_pred CCcccceeeccccchhh-----hhhhhHHHHHhcCHHHHHHHHHHhhhcCCCC---CCCCCCCCCCCCCChHHHHHHHHH
Q 043954 725 YNPATWMLEVTSASTEA-----ELGLDFAKIYLKSPLYQETIELVNRLSEPQP---GSKELRFPTRYPQSSMEQYLACLW 796 (1045)
Q Consensus 725 ~npad~~~~v~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~q~~~l~~ 796 (1045)
.|||||++|+++.+.+. +...++.+.|++++.+++..+.......... .........++..+++.|+.+|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 99999999998754321 1223566778777766655443332111110 111111224567899999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhHHHHHHH
Q 043954 797 KQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLIVILGSMYIAVIFLGVNYCSTVLPYVATERTVLYRE 876 (1045)
Q Consensus 797 R~~~~~~R~~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 876 (1045)
|+++..||||.++.+|+++.+++|+++|++||+++++ ..+++++.|++|+++++.++.++....+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999854 5678999999999999888887778888899999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 043954 877 KFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVSVCPGVEIASV 956 (1045)
Q Consensus 877 ~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 956 (1045)
+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||.|+++++++.+++.++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCcc-eeecc---CCCccHHHHHHhhcCCccc
Q 043954 957 LATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMNR-EILIF---GEHKTVGSFLHDYYGFHHD 1032 (1045)
Q Consensus 957 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~~~~-~~~~~---~~~~~~~~~l~~~~g~~~~ 1032 (1045)
+++++++++++|+||+++.++||+||+|++|+||++|++|+++.|||.+... +|... +.|...|+++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999988764 44311 1121224777788999999
Q ss_pred cccceeEEEEEe
Q 043954 1033 RLGLVAAVLIAF 1044 (1045)
Q Consensus 1033 ~~~~~~~il~~f 1044 (1045)
+.|+++++|++|
T Consensus 586 ~~~~~~~il~~~ 597 (617)
T TIGR00955 586 DLYLDLIGLVIL 597 (617)
T ss_pred cHHHHHHHHHHH
Confidence 999999988765
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.3e-91 Score=910.24 Aligned_cols=575 Identities=22% Similarity=0.376 Sum_probs=490.3
Q ss_pred cceeEEEeceEEEEecCccc--cc---------------c--ccccccccccccccceecCceEEEEecCCCCCHHHHHH
Q 043954 460 EQLTMAFKDVRYFVDTPPAM--RK---------------Q--GFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMD 520 (1045)
Q Consensus 460 ~~~~l~~~~l~~~~~~~~~~--~~---------------~--~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~ 520 (1045)
+.+.++|+|++++....+.. +. . +.+..++++|+|||+++++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 45778999999876322110 00 0 11223467999999999999999999999999999999
Q ss_pred HHhCCCCC--CeEEEEEEECCeeCCc--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCC----CCCHHHHHHH-H
Q 043954 521 VLSGRKTG--GIIQGEIRVGGYPKVQ--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP----EIDSETKARF-V 591 (1045)
Q Consensus 521 ~l~G~~~~--~~~~G~I~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~-v 591 (1045)
+|+|+.++ .+.+|+|.+||++... ...++.++|++|+|.+++.+||+||+.|++.++.+. ..+++++.++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998632 2579999999998643 234556899999999999999999999998877542 2334443333 5
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEE
Q 043954 592 EEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVC 670 (1045)
Q Consensus 592 ~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~ 670 (1045)
+++++.+||+++.|+++|+...++|||||||||+||++|+.+|+|++|||||+|||+.++.++++.|++++++ |+|+|+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999998877899999999999999999999999999999999999999999999999875 999999
Q ss_pred EecCCcHHHHHhcceEEEEecCcEEEEecCCCcchhHHHHHHhcCCCCCCCCCCCCcccceeeccccchh----------
Q 043954 671 TIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTE---------- 740 (1045)
Q Consensus 671 ~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~~~v~~~~~~---------- 740 (1045)
++|||+.++.+.||++++|+ +|+++++|++ +++.+||++++ . +||+++|||||++|+++.+.+
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~-~G~iv~~G~~----~~~~~yF~~lG-~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLY-EGYQIYFGPA----DKAKQYFEKMG-F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEe-CCeEEEECCH----HHHHHHHHHcC-C-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 99999878999999999998 5999999986 57899999994 3 699999999999999875421
Q ss_pred hhhhhhHHHHHhcCHHHHHHHHHHhhhcCCC---------------CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 043954 741 AELGLDFAKIYLKSPLYQETIELVNRLSEPQ---------------PGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRS 805 (1045)
Q Consensus 741 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~ 805 (1045)
.....++++.|++|+.+++..+.++...... ...+.....+.+..|+|+|+++|++|++++.|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 1234589999999998877665544321110 0011112234678899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhHHHHHHHhcCCCCCHH
Q 043954 806 PEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLIVILGSMYIAVIFLGVNYCSTVLPYVATERTVLYREKFAGMYSPW 885 (1045)
Q Consensus 806 ~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 885 (1045)
|.++.+|+++++++|+++|++||+++++ ..++++|.|++|+++++.++.++.++ +.+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPKN---TSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHH
Confidence 9999999999999999999999999864 46789999999999999999887665 4456799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043954 886 AYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVSVCPGVEIASVLATAIYTIL 965 (1045)
Q Consensus 886 ~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 965 (1045)
+|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.+++.++++++++++|+..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCcceeec------------------------cCCC-ccHH
Q 043954 966 NLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMNREILI------------------------FGEH-KTVG 1020 (1045)
Q Consensus 966 ~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~~~~~~~~------------------------~~~~-~~~~ 1020 (1045)
++|+||++|.++||+||+|++|+||++|++||++.|||++..++|.. +|++ .++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999999999999999999999999999999999988776631 1112 3567
Q ss_pred HHHHhhcCCccccccceeEEEEEeC
Q 043954 1021 SFLHDYYGFHHDRLGLVAAVLIAFP 1045 (1045)
Q Consensus 1021 ~~l~~~~g~~~~~~~~~~~il~~f~ 1045 (1045)
+|+...|||+++|+|+|++||++|+
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~ 679 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFT 679 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHH
Confidence 8998889999999999999998763
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.2e-90 Score=894.20 Aligned_cols=579 Identities=24% Similarity=0.407 Sum_probs=483.0
Q ss_pred cccceeEEEeceEEEEecCcccc-----------------c-cc---cccccccccccccceecCceEEEEecCCCCCHH
Q 043954 458 PFEQLTMAFKDVRYFVDTPPAMR-----------------K-QG---FNEKKLQLLHDITGAFRPGILTALMGVSGAGKT 516 (1045)
Q Consensus 458 ~~~~~~l~~~~l~~~~~~~~~~~-----------------~-~~---~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKS 516 (1045)
+.+.+.++|+|+++........+ . .+ .+..++++|+|||+.++|||+++|+||||||||
T Consensus 126 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS 205 (1470)
T PLN03140 126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKT 205 (1470)
T ss_pred CCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence 34567899999999765211100 0 01 112356799999999999999999999999999
Q ss_pred HHHHHHhCCCCCC-eEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCC-------CCCHHHH-
Q 043954 517 TLMDVLSGRKTGG-IIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP-------EIDSETK- 587 (1045)
Q Consensus 517 TLl~~l~G~~~~~-~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-------~~~~~~~- 587 (1045)
||||+|+|+.++. ..+|+|.+||++......++.++||+|+|.+++.+||+||+.|+++++.+. +.+.+++
T Consensus 206 TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~ 285 (1470)
T PLN03140 206 TLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKD 285 (1470)
T ss_pred HHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHh
Confidence 9999999987632 248999999998754444677999999999999999999999998765321 1111111
Q ss_pred -----------------------HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 043954 588 -----------------------ARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 644 (1045)
Q Consensus 588 -----------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPts 644 (1045)
+..++++++.+||+++.||.+|+...++|||||||||+||++|+.+|++++|||||+
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTs 365 (1470)
T PLN03140 286 AGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 365 (1470)
T ss_pred ccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCc
Confidence 123578999999999999999988888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCcchhHHHHHHhcCCCCCCCCC
Q 043954 645 GLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIEYFQGISGVPQIKA 723 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~ 723 (1045)
|||+.++.++++.|+++++ .|+|+|+++|||+.++++.||++++|+ +|+++|+|+. +++.+||++++ . +||+
T Consensus 366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~-~G~ivy~G~~----~~~~~yF~~lG-f-~cP~ 438 (1470)
T PLN03140 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS-EGQIVYQGPR----DHILEFFESCG-F-KCPE 438 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee-CceEEEeCCH----HHHHHHHHHcC-C-CCCC
Confidence 9999999999999999987 489999999999888999999999998 5999999986 57899999994 4 6999
Q ss_pred CCCcccceeeccccchhh------------hhhhhHHHHHhcCHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCChHHHH
Q 043954 724 NYNPATWMLEVTSASTEA------------ELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQY 791 (1045)
Q Consensus 724 ~~npad~~~~v~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~ 791 (1045)
++|||||++|+++..+.. ....++++.|++|+.+++..+.++.........+.....++|..+++.|+
T Consensus 439 ~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~ 518 (1470)
T PLN03140 439 RKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELL 518 (1470)
T ss_pred CCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHH
Confidence 999999999998864321 12357899999998877665443321111111111112346889999999
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhHH
Q 043954 792 LACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLIVILGSMYIAVIFLGVNYCSTVLPYVATERT 871 (1045)
Q Consensus 792 ~~l~~R~~~~~~R~~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~ 871 (1045)
+.|++|+++..+||+.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++|+++++..+.++.+ ++.++.||+
T Consensus 519 ~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~ 597 (1470)
T PLN03140 519 KACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLP 597 (1470)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccc
Confidence 9999999999999999999999999999999999999998664444556677899999888888776655 466778999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 043954 872 VLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVSVCPGV 951 (1045)
Q Consensus 872 v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1045)
||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||.|+++++++.+++.++++++++++|+.
T Consensus 598 vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~ 677 (1470)
T PLN03140 598 VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677 (1470)
T ss_pred hhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCcce-eeccCCCccHHHHHHhhcCCc
Q 043954 952 EIASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMNRE-ILIFGEHKTVGSFLHDYYGFH 1030 (1045)
Q Consensus 952 ~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~~~~~-~~~~~~~~~~~~~l~~~~g~~ 1030 (1045)
.+|+.+++++++++++|+||+||.++||+||+|++|+||++|++||+++|||.+..+. +.|.+.+.+.|+.+++.+|+.
T Consensus 678 ~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~ 757 (1470)
T PLN03140 678 IIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcC
Confidence 9999999999999999999999999999999999999999999999999999776543 222232333444445789998
Q ss_pred cc--cccceeEEEEEe
Q 043954 1031 HD--RLGLVAAVLIAF 1044 (1045)
Q Consensus 1031 ~~--~~~~~~~il~~f 1044 (1045)
.+ ++|+++++|++|
T Consensus 758 ~~~~~~w~~~~iL~~~ 773 (1470)
T PLN03140 758 TDKNWYWIGVGALLGF 773 (1470)
T ss_pred ccccchhhhHHHHHHH
Confidence 65 568999998876
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-83 Score=776.41 Aligned_cols=548 Identities=25% Similarity=0.456 Sum_probs=486.1
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCcccccccceEeecCCccCCCCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~-~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 565 (1045)
.+.++|+|+|+.++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.+....++.++|++|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3467999999999999999999999999999999999976532 235899999998765444778999999999999999
Q ss_pred HHHHHHHHhhhcCCCC----CCHHHHH-HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 043954 566 VEESVKFSAWLRLPPE----IDSETKA-RFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMD 640 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLD 640 (1045)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++++||+||+...||+||||||||++|.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999987732 2333322 2577899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCcchhHHHHHHhcCCCCC
Q 043954 641 EPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIEYFQGISGVP 719 (1045)
Q Consensus 641 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~ 719 (1045)
|+|.|||+.++.++++.||++++. +.|.+++.|||+.+++++||+|++|.+ |+++|+||. +++.+||++++ .
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G-f- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG-F- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC-c-
Confidence 999999999999999999999875 889999999999999999999999985 999999997 57899999984 3
Q ss_pred CCCCCCCcccceeeccccchhh-----------hhh-hhHHHHHhcCHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCh
Q 043954 720 QIKANYNPATWMLEVTSASTEA-----------ELG-LDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSS 787 (1045)
Q Consensus 720 ~~~~~~npad~~~~v~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 787 (1045)
.||++.++|||+.++++..++. ... .|+++.|.+|+.+++....++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999999843221 112 6899999999999887765543322223333444567899999
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 043954 788 MEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLIVILGSMYIAVIFLGVNYCSTVLPYVA 867 (1045)
Q Consensus 788 ~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 867 (1045)
|.|++.|++|.++.+.||..++..++++.+++|+++|++|++... ++..+.+.+.|++||++++..+.++.++ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999872 4566788999999999999999887775 4445
Q ss_pred HhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043954 868 TERTVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVSV 947 (1045)
Q Consensus 868 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1045)
+.||||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||.+++++||.++++++++..|+.+++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCcceeec---------------
Q 043954 948 CPGVEIASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMNREILI--------------- 1012 (1045)
Q Consensus 948 ~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~~~~~~~~--------------- 1012 (1045)
+++...|+.++++.++...+++||+||.++||+||+|++|+||+.|++|+++.|||++.+++|..
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998887751
Q ss_pred ------cCCC-ccHHHHHHhhcCCccccccceeEEEEEe
Q 043954 1013 ------FGEH-KTVGSFLHDYYGFHHDRLGLVAAVLIAF 1044 (1045)
Q Consensus 1013 ------~~~~-~~~~~~l~~~~g~~~~~~~~~~~il~~f 1044 (1045)
+|.. +.+.+|++..|+|+++|.|||+||++||
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf 714 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGF 714 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHH
Confidence 1111 4567889899999999999999999987
No 10
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=8.3e-62 Score=592.17 Aligned_cols=396 Identities=16% Similarity=0.261 Sum_probs=318.2
Q ss_pred ChHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHHHHHhhCCCCCCCCCChhHHHHhhcCch
Q 043954 1 MEVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVLQYFEDCGFRCPERKGIADFLQEVISKK 80 (1045)
Q Consensus 1 ~~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~~yF~~lG~~cp~~~npADf~~~i~~~~ 80 (1045)
++.|+++++.|+ |+|+|+|||+++++++||++++|++|+++|+|+.+++++||+++||+||+++|||||++|+++.+
T Consensus 246 ~~~L~~l~~~g~---TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~ 322 (659)
T PLN03211 246 VLTLGSLAQKGK---TIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGV 322 (659)
T ss_pred HHHHHHHHhCCC---EEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCcc
Confidence 467899998888 55999999999999999999999999999999999999999999999999999999999999864
Q ss_pred hhhhhcccCCCCCCCCCHHHHHHHHHhcHhhhHHHHHhcCc--cc-cc------cccccccccCccccCHHHHHHHHHHH
Q 043954 81 DQAQYWRHNDIPYSYVSVDQFSQMFKESYLGKRLDEELSKP--YD-RS------QCHKNALSFSKHALSKWELFQACMSR 151 (1045)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~-~~------~~~~~~~~~~~~~~s~~~q~~~l~~R 151 (1045)
.+.......+ .....+++++.|++.. .++..++.... .. .. ..+.....+..+..+||+|+.+|++|
T Consensus 323 ~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R 398 (659)
T PLN03211 323 CQTDGVSERE---KPNVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQR 398 (659)
T ss_pred ccCCCccccc---cchHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHH
Confidence 3211000000 1112345566665322 11111111100 00 00 00000001123457899999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHHHHHH-HHHHHHHHhhccchhhhhhhc
Q 043954 152 ELLLMKRNSFVYVFKTAQLAITAIITMTVFIRTQMKLDLMHANFMMGSLYYAIVRLMT-NGVAELSLTITRLPVVYRQRS 230 (1045)
Q Consensus 152 ~~~~~~Rd~~~~~~r~~~~i~~~li~G~if~~~~~~~~~~~~~~~~g~lF~~~~~~~~-~~~~~i~~~~~er~vf~rE~~ 230 (1045)
++++ +||+.+..+|+++.+++|+++|++||+++ ..+.+++.|++||+++++++ +.+..++.|+.||+||+||++
T Consensus 399 ~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~ 473 (659)
T PLN03211 399 SLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERA 473 (659)
T ss_pred HHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 9998 89999999999999999999999999652 45789999999999888765 568899999999999999999
Q ss_pred CcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHH
Q 043954 231 FLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTFQTMVIATTVG 310 (1045)
Q Consensus 231 ~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~~~~~~A~~i~ 310 (1045)
+|+|++++|++||+++|+|+.++.+++|++|+|||+||++++.+||+|++++++++++++++|++++|++||+.+|+.++
T Consensus 474 ~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~ 553 (659)
T PLN03211 474 SGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIV 553 (659)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhhhccCCCc-----ccccCC-CccccccceEeccCccccc
Q 043954 311 SLALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISLNEFLAPR-----WQKAIA-ENTTIGRYTLTSHGLNFES 384 (1045)
Q Consensus 311 ~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~nef~~~~-----~~~~~~-~~~~~G~~~L~~~g~~~~~ 384 (1045)
|++++++++|+||+|+ +||+||+|++|+||++|||||++.|||.+.. ++|..+ +....+..++....+. .
T Consensus 554 ~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~--~ 629 (659)
T PLN03211 554 TVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG--Q 629 (659)
T ss_pred HHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc--c
Confidence 9999999999999997 7999999999999999999999999997642 345321 1111122233322333 2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhc
Q 043954 385 YFYWISVAALIGFMILFDLGFILALTYL 412 (1045)
Q Consensus 385 ~~~w~~i~ili~~~l~~~~~~~l~l~~~ 412 (1045)
...|.++++++++.++++++.++++...
T Consensus 630 ~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 630 ISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999888643
No 11
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-62 Score=589.21 Aligned_cols=395 Identities=22% Similarity=0.449 Sum_probs=327.1
Q ss_pred ChHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHHHHHhhCCCCCCCCCChhHHHHhhcCch
Q 043954 1 MEVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVLQYFEDCGFRCPERKGIADFLQEVISKK 80 (1045)
Q Consensus 1 ~~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~~yF~~lG~~cp~~~npADf~~~i~~~~ 80 (1045)
++.||++|+.||+ |||||||||+++|++|||+++|++|++||+||++++++||+++||+||++.|||||++|+++.+
T Consensus 210 v~~Lk~lA~~grt---Vi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~ 286 (613)
T KOG0061|consen 210 VQLLKRLARSGRT---VICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD 286 (613)
T ss_pred HHHHHHHHhCCCE---EEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC
Confidence 4789999999994 5999999999999999999999999999999999999999999999999999999999999853
Q ss_pred hhhhhcccCCCCCCCCCHHHHHHHHHhcHhhhHHHHHhcCccccccccccccccCccccCHHHHHHHHHHHHHHHHhcCh
Q 043954 81 DQAQYWRHNDIPYSYVSVDQFSQMFKESYLGKRLDEELSKPYDRSQCHKNALSFSKHALSKWELFQACMSRELLLMKRNS 160 (1045)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~ 160 (1045)
+..+.. ....+..+..+.++..+...+..+....... ..+.. ......+||.|+..|.+|.+++.+|||
T Consensus 287 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~s~~~q~~~L~~R~~~~~~R~~ 355 (613)
T KOG0061|consen 287 SGTREL------EEAVRIAKLINKFSQTDNLKKTLEALEKSLS---TSKKV--EIGTSPSWWTQFKILLKRSLKNIRRDP 355 (613)
T ss_pred CCchhH------HhHHHHHHHhhhccccchhhhhHHHHhhhcc---ccccc--ccccCCcHHHHHHHHHHHHhHHHhhcH
Confidence 110000 0000111122222210000000000000000 00000 011167999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHHHHHHHHHH-HHHHhhccchhhhhhhcCcccchhhH
Q 043954 161 FVYVFKTAQLAITAIITMTVFIRTQMKLDLMHANFMMGSLYYAIVRLMTNGVA-ELSLTITRLPVVYRQRSFLLYSAWAY 239 (1045)
Q Consensus 161 ~~~~~r~~~~i~~~li~G~if~~~~~~~~~~~~~~~~g~lF~~~~~~~~~~~~-~i~~~~~er~vf~rE~~~g~Y~~~ay 239 (1045)
.+...|.+|.+++|+++|++||++ +.+..+.+++.|++|+.+.++.+.++. .++.|++||++|.||+.+|+|+.++|
T Consensus 356 ~~~~~r~~~~~~~~~~lg~~~~~~--~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y 433 (613)
T KOG0061|consen 356 SLLLLRLIQSLVTGLLLGLLYLNL--GNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSY 433 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHH
Confidence 999999999999999999999966 455566779999999999999776655 79999999999999999999999999
Q ss_pred HHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Q 043954 240 SLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTFQTMVIATTVGSLALVLMFL 319 (1045)
Q Consensus 240 ~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~~~~~~A~~i~~~~~~~~~l 319 (1045)
|+|++++++|+.++.+++|++|+|||+||+++..+|++|++++++..+++++++++++|+.||...|+.+++++.+++++
T Consensus 434 ~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l 513 (613)
T KOG0061|consen 434 YLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLL 513 (613)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceeCCCCCCccchhhhhhChhHHHHHHHhhhccCCCcccccCC---CccccccceEeccCccccccccchhhHHHHH
Q 043954 320 FGGFILPRSSLPPWLSWGFWISLMTYGEIGISLNEFLAPRWQKAIA---ENTTIGRYTLTSHGLNFESYFYWISVAALIG 396 (1045)
Q Consensus 320 f~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~nef~~~~~~~~~~---~~~~~G~~~L~~~g~~~~~~~~w~~i~ili~ 396 (1045)
|+||+++.++||+||+|++|+||++|+||++++|||.+....|... ++...|.+++...++... ..|.++.++.+
T Consensus 514 ~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~l~~l~~ 591 (613)
T KOG0061|consen 514 FGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SFWLDLLVLLA 591 (613)
T ss_pred HhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--ccchhHHHHHH
Confidence 9999999999999999999999999999999999998743444321 244577888887777654 48999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 043954 397 FMILFDLGFILALTYLK 413 (1045)
Q Consensus 397 ~~l~~~~~~~l~l~~~~ 413 (1045)
+.++++++.++++.+..
T Consensus 592 ~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 592 FIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999887654
No 12
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.7e-61 Score=588.72 Aligned_cols=398 Identities=24% Similarity=0.412 Sum_probs=341.7
Q ss_pred ChHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHHHHHhhCCCCCCCCCChhHHHHhhcCch
Q 043954 1 MEVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVLQYFEDCGFRCPERKGIADFLQEVISKK 80 (1045)
Q Consensus 1 ~~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~~yF~~lG~~cp~~~npADf~~~i~~~~ 80 (1045)
++.||+++++|+ ++|+|+|||+++++++||++++|++|+++|+||.+++++||+++||+||++.|||||++|+++.+
T Consensus 206 ~~~L~~l~~~g~---tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~ 282 (617)
T TIGR00955 206 VQVLKGLAQKGK---TIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVI 282 (617)
T ss_pred HHHHHHHHhCCC---EEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcC
Confidence 467899998888 55999999999999999999999999999999999999999999999999999999999998754
Q ss_pred hhhhhcccCCCCCCCCCHHHHHHHHHhcHhhhHHHHHhcCcccccc---ccccccccCccccCHHHHHHHHHHHHHHHHh
Q 043954 81 DQAQYWRHNDIPYSYVSVDQFSQMFKESYLGKRLDEELSKPYDRSQ---CHKNALSFSKHALSKWELFQACMSRELLLMK 157 (1045)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~ 157 (1045)
...+ .....+.+++.+.|+++..+++..++......+.. +........++..+++.|+..|++|++++.+
T Consensus 283 ~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~ 355 (617)
T TIGR00955 283 PGSE-------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVL 355 (617)
T ss_pred cccc-------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 2211 00122456777888877766655444332111100 0111112245678999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHHHHHHHH-HHHHHHhhccchhhhhhhcCcccch
Q 043954 158 RNSFVYVFKTAQLAITAIITMTVFIRTQMKLDLMHANFMMGSLYYAIVRLMTNG-VAELSLTITRLPVVYRQRSFLLYSA 236 (1045)
Q Consensus 158 Rd~~~~~~r~~~~i~~~li~G~if~~~~~~~~~~~~~~~~g~lF~~~~~~~~~~-~~~i~~~~~er~vf~rE~~~g~Y~~ 236 (1045)
|||.++.+|+++.+++|+++|++||++ +.++.+.+++.|++|++++++++.+ +..++.+..||++|+||+.+|+|++
T Consensus 356 R~~~~~~~~~~~~i~~~li~G~~f~~~--~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~ 433 (617)
T TIGR00955 356 RDPLLLKVRLIQTMMTAILIGLIYLGQ--GLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCH
Confidence 999999999999999999999999965 4556788999999999999888875 5678889999999999999999999
Q ss_pred hhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Q 043954 237 WAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTFQTMVIATTVGSLALVL 316 (1045)
Q Consensus 237 ~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~~~~~~A~~i~~~~~~~ 316 (1045)
++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++|+++++++|+..+|+.++++++++
T Consensus 434 ~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~ 513 (617)
T TIGR00955 434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIP 513 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhhhccCCCcc-cccCCC----ccccccceEeccCccccccccchhh
Q 043954 317 MFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISLNEFLAPRW-QKAIAE----NTTIGRYTLTSHGLNFESYFYWISV 391 (1045)
Q Consensus 317 ~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~nef~~~~~-~~~~~~----~~~~G~~~L~~~g~~~~~~~~w~~i 391 (1045)
+++|+||+++.++||+||+|++|+||++|+|||++.|||.+..+ +|...+ +...|+++++.+|++.+ +.|.++
T Consensus 514 ~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~ 591 (617)
T TIGR00955 514 FLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDL 591 (617)
T ss_pred HHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHH
Confidence 99999999999999999999999999999999999999998775 453211 23468888988887754 469999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 043954 392 AALIGFMILFDLGFILALTYL 412 (1045)
Q Consensus 392 ~ili~~~l~~~~~~~l~l~~~ 412 (1045)
++++++.+++.++.++++.+.
T Consensus 592 ~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 592 IGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888653
No 13
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-49 Score=399.75 Aligned_cols=215 Identities=27% Similarity=0.368 Sum_probs=191.6
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++ ++.++|+|||+++++||+++|+||||||||||||||+|+.+ +++|+|.++|++..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 5788888765 45789999999999999999999999999999999999987 67999999997653
Q ss_pred c----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 544 Q----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 544 ~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
. ...|+.+|+|+|+.++||++||.||+.++...- ...++++.++.+.++|+++||.+.+|... ..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2 346788999999999999999999999874322 24567778888999999999999998886 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|||||+|||||+.+|+++++|||||+|||+...++++.+++++++|.|.|++||+.. -.-+.+||++.|+ +|+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEee-CCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999976 4667899999998 59999999
Q ss_pred CCC
Q 043954 700 MLG 702 (1045)
Q Consensus 700 ~~~ 702 (1045)
+++
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 764
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-47 Score=397.17 Aligned_cols=219 Identities=26% Similarity=0.353 Sum_probs=194.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++++++.+... ..+...+|+|||++|++||+.||+|+||||||||+|++.++.. |++|+|.++|+++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5788888766431 1234679999999999999999999999999999999999987 67999999998754
Q ss_pred c------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 Q------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
. +..|+.+|+++|+.+++...||.||+.|+..+. ..+++++++++.++++.+||++..+... .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 3 345788999999999999999999999988765 3568889999999999999999888876 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
|||||||+|||||+.+|+||++|||||+|||++.+.|+++|+++.++ |.||+++||+++ -+.+.|||+.+|+ +|+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEEE
Confidence 99999999999999999999999999999999999999999999876 999999999975 4678899999998 59999
Q ss_pred EecCCC
Q 043954 697 YSGMLG 702 (1045)
Q Consensus 697 ~~G~~~ 702 (1045)
+.|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999875
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-45 Score=376.51 Aligned_cols=231 Identities=25% Similarity=0.356 Sum_probs=201.0
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++++++++ +++.|++|||++|++||+++|+||||+|||||||+|.|+.+ |.+|+|.++|++
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcc
Confidence 357889988754 56789999999999999999999999999999999999988 679999999998
Q ss_pred CCc------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCC
Q 043954 542 KVQ------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIPGQS 614 (1045)
Q Consensus 542 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~ 614 (1045)
+.. ...++..|+++|+-.+|..+||+||+.|.. +.....+++..++.+..-++.+||... .+... .
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----s 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLYP-----S 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----h
Confidence 643 134677899999999999999999999864 334456778888888888999999876 66654 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
+||||||||++||||++.||+++++||||+||||.++..+-++++++.++ |.|++++|||.+ +++..||++++|. +|
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~-~g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLA-DG 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEe-CC
Confidence 89999999999999999999999999999999999999999999999877 999999999987 6899999999998 59
Q ss_pred EEEEecCCCcc----hhHHHHHHhcCC
Q 043954 694 RIIYSGMLGRH----SSKLIEYFQGIS 716 (1045)
Q Consensus 694 ~~~~~G~~~~~----~~~~~~~f~~~~ 716 (1045)
+++.+|++++. ..-+.+||.+..
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 99999998642 224667777653
No 16
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-46 Score=378.89 Aligned_cols=215 Identities=25% Similarity=0.372 Sum_probs=193.4
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++|+|+++.+ +++.+++|+|++|++||+++++|||||||||+||+|.++.. |++|+|++||+++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 5788888754 35779999999999999999999999999999999999988 68999999999875
Q ss_pred c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 043954 544 Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD--IKDSLVGIPGQSGLST 618 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSg 618 (1045)
. ...|+.+|||-|+-.+||++||.||+.+--.+. .+++++.+++++++++.+||+. ..++.. ++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYP-----HELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----hhcCc
Confidence 4 357888999999999999999999998865553 4678888999999999999974 566654 68999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
||+|||.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|+|++|||.+ |.++++||+++|+ +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999876 999999999986 7899999999998 699999
Q ss_pred ecCCCc
Q 043954 698 SGMLGR 703 (1045)
Q Consensus 698 ~G~~~~ 703 (1045)
.+++++
T Consensus 217 ~~~P~~ 222 (309)
T COG1125 217 YDTPDE 222 (309)
T ss_pred eCCHHH
Confidence 998754
No 17
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-45 Score=380.54 Aligned_cols=203 Identities=24% Similarity=0.362 Sum_probs=180.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++++++.+. ...+|+|+|++|++||+++|+||||||||||||+|+|+.+ |++|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 356777877552 3679999999999999999999999999999999999988 6799999999987
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
. .....++||+|++.++|.+||+||+.++...+. .+++++++++++.++.+||.+..|... ++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHH
Confidence 3 334568999999999999999999999876653 355666778999999999999998886 589999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
||+|||||+.+|+||+||||+++||+.|+..+.+.|.++.++ ++||+++||+.+ |...++|||++|.+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~ 206 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence 999999999999999999999999999999999999998754 899999999987 68889999999985
No 18
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-46 Score=429.58 Aligned_cols=255 Identities=27% Similarity=0.432 Sum_probs=211.0
Q ss_pred CCCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCccc-ccceeEEEeceEEEEecCccccccccccccccccc
Q 043954 415 PKMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLP-FEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLH 493 (1045)
Q Consensus 415 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~ 493 (1045)
....++..+.+|++|..+++|..+.. |...| .-...++|+||+|.|+.++ +.++|+
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~-------------G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk 485 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLT-------------GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLK 485 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCC-------------CccccccccceEEEEEeeeecCCCC----------Cchhhc
Confidence 35667888999999999987654321 00011 1134689999999998754 468999
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESV 570 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l 570 (1045)
|+||+|+|||.|||+||||+||||+.++|-.+++ |.+|+|.+||+|+.+ ..+|+.+|+|.|++.+|.. ||+|||
T Consensus 486 ~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI 562 (716)
T KOG0058|consen 486 NLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENI 562 (716)
T ss_pred CceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHH
Confidence 9999999999999999999999999999999988 689999999999754 4467899999999998864 999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 043954 571 KFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARA 650 (1045)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~ 650 (1045)
.|+..-...+++..+.+.+.+++.+. ++++.+||.||+.|. .||||||||+||||||++||+||||||.||+||+++
T Consensus 563 ~YG~~~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 563 AYGLDNATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred hcCCCCCCHHHHHHHHHHhChHHHHH--hCccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 99864111111222333444566665 688999999999986 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 651 AAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 651 ~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
+..|.+.|.++.+ ++|||++.|+++ ..+.+|+|++++ +|++++.|..+
T Consensus 640 E~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~-~G~V~E~G~h~ 687 (716)
T KOG0058|consen 640 EYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID-KGRVVEMGTHD 687 (716)
T ss_pred HHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc-CCeEEecccHH
Confidence 9999999999865 699999999986 789999999998 59999999764
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9e-45 Score=377.13 Aligned_cols=208 Identities=28% Similarity=0.447 Sum_probs=177.2
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+.+|++..+... ....++|+|||++|++||+++|+|||||||||||++|.|+.. |++|+|.++|.++..
T Consensus 3 ~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~ 71 (226)
T COG1136 3 ELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTK 71 (226)
T ss_pred EEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCc
Confidence 467777765422 122579999999999999999999999999999999999987 579999999987642
Q ss_pred c------c-ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCCC
Q 043954 545 K------T-FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKD-SLVGIPGQSGL 616 (1045)
Q Consensus 545 ~------~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~L 616 (1045)
. . +++.+|||+|+..++|++||+||+.++..+... ...++++.++++++.+||.+..+ +.+ .+|
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eL 143 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKKP-----SEL 143 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCCc-----hhc
Confidence 1 1 345799999999999999999999987655422 22245667889999999987666 555 479
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||||||||||+.+|++++.||||.+||+.++++|++++++++++ |+|+|++||++ ++.+.|||++.|.+ |+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999999999999999999999999999876 89999999997 47899999999985 66
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-44 Score=380.04 Aligned_cols=218 Identities=26% Similarity=0.427 Sum_probs=187.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. .+++|+|||+++++||+++|+||||||||||+|+|.|+.+ |.+|+|.++|++.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 578999999763 1259999999999999999999999999999999999887 6799999999886
Q ss_pred CcccccccceEeecCC--ccCCCCCHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQKTFARISGYCEQTD--IHSPQITVEESVKFSAWLRLP--PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
.....+..+|||||.. ..-...||+|.+..+...+.. ...++++ ++.++++|+.+|+.+..|+.+| +|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 5544456799999954 223447999999987433221 1223333 5679999999999999999997 6999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
||+|||-|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+++.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999999999999999997 5889999999996 689999
Q ss_pred cCCCcc
Q 043954 699 GMLGRH 704 (1045)
Q Consensus 699 G~~~~~ 704 (1045)
|++++.
T Consensus 220 G~~~~~ 225 (254)
T COG1121 220 GPPEEV 225 (254)
T ss_pred cChhhc
Confidence 998753
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-45 Score=370.53 Aligned_cols=220 Identities=27% Similarity=0.365 Sum_probs=189.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++||+..++ +++++|+|||++|++||+++|+||||||||||||+|+|+.+ +++|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 578999998764 35789999999999999999999999999999999999877 6799999999875
Q ss_pred Cc------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 043954 543 VQ------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP------PEIDSETKARFVEEVIETIELDDIKDSLVGI 610 (1045)
Q Consensus 543 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~ 610 (1045)
.. +.+|+.+|+++|+.++.+.+||.+|+..+..-+.+ .-.++++ +..+-+.++++|+.+.+-++.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~d-k~~Al~aLervgi~~~A~qra~- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKED-KAQALDALERVGILDKAYQRAS- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHH-HHHHHHHHHHcCcHHHHHHHhc-
Confidence 32 34567899999999999999999999876432211 1123443 4557789999999988888874
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEE
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
.|||||+|||+|||||+.+|++++.|||+++|||.++++||+.|+++.++ |.|+|+..|+.+. ..++|||++-|
T Consensus 147 ----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl 221 (258)
T COG3638 147 ----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGL 221 (258)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEe
Confidence 79999999999999999999999999999999999999999999999865 8999999999874 67899999999
Q ss_pred ecCcEEEEecCCCcc
Q 043954 690 KAGGRIIYSGMLGRH 704 (1045)
Q Consensus 690 ~~gG~~~~~G~~~~~ 704 (1045)
+ +|+++|+|++.+.
T Consensus 222 ~-~G~ivfDg~~~el 235 (258)
T COG3638 222 K-AGRIVFDGPASEL 235 (258)
T ss_pred c-CCcEEEeCChhhh
Confidence 8 5999999998754
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.7e-45 Score=384.21 Aligned_cols=227 Identities=27% Similarity=0.398 Sum_probs=194.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++.+|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y-------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGY-------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEE-------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 36788999876 35789999999999999999999999999999999999887 5799999999986
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP--PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. +...+.++||||.....+.+||+|-+.++..-... ...++ +.++.++++++.+|+.+.+++.+. +||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~-~D~~~v~~aL~~~~~~~la~r~~~-----~LS 140 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSK-EDEEIVEEALELLGLEHLADRPVD-----ELS 140 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCH-hHHHHHHHHHHHhCcHHHhcCccc-----ccC
Confidence 53 45668899999999888899999999987432111 11223 334468999999999999999984 799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
|||||||.|||||+++|++|+||||||+||...+.++++++++++++ |+|+|+++||++ ...++||++++|+ +|+++
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk-~G~i~ 218 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK-DGKIV 218 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEE
Confidence 99999999999999999999999999999999999999999999954 999999999998 4789999999998 59999
Q ss_pred EecCCCcc--hhHHHHHH
Q 043954 697 YSGMLGRH--SSKLIEYF 712 (1045)
Q Consensus 697 ~~G~~~~~--~~~~~~~f 712 (1045)
..|++++. .+.+.+.|
T Consensus 219 a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 219 AQGTPEEVLTEENLREVY 236 (258)
T ss_pred eecCcchhcCHHHHHHHh
Confidence 99998752 33445554
No 23
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4e-44 Score=396.89 Aligned_cols=214 Identities=30% Similarity=0.473 Sum_probs=190.7
Q ss_pred eEEEeceEEEEecCccccccccccc-cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEK-KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
.++++|++..+ + ++.+|+||||++++||++||+||||||||||+|+|+|+.. |++|+|.++|.+
T Consensus 4 ~i~~~~l~k~~-------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKY-------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEe-------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEe
Confidence 35677888765 3 4679999999999999999999999999999999999988 579999999988
Q ss_pred CCc--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 542 KVQ--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 542 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
... ...++.+||++|++.+++.+||+||+.|.+.++.... +..+++++++++.++|.+..++++ ++||+|
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G 140 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGG 140 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHH
Confidence 654 3566789999999999999999999999998885432 445567999999999998667777 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTG-RTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
||||++||+||+++|++|||||||+||||.++.++.+.|++++++| +||+++||+++ ++...||++++|+ +|++++.
T Consensus 141 ~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~ 218 (293)
T COG1131 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAE 218 (293)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEe
Confidence 9999999999999999999999999999999999999999999987 79999999987 6888899999998 5999999
Q ss_pred cCC
Q 043954 699 GML 701 (1045)
Q Consensus 699 G~~ 701 (1045)
|++
T Consensus 219 g~~ 221 (293)
T COG1131 219 GTP 221 (293)
T ss_pred CCH
Confidence 975
No 24
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-42 Score=424.64 Aligned_cols=260 Identities=25% Similarity=0.394 Sum_probs=213.5
Q ss_pred cCCCCCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccc
Q 043954 412 LKPPKMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQL 491 (1045)
Q Consensus 412 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i 491 (1045)
...|.+.++..++.+++++++++|..+... +. +...+.-...++++||+|.||.++ +.+|
T Consensus 946 s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~--~~--------~~~~~~~~G~I~~~~V~F~YPsRP----------~~~I 1005 (1228)
T KOG0055|consen 946 SYAPDISKAKIAAGSIFEILDRKPTIDPDS--TS--------GGKLPNVKGDIEFRNVSFAYPTRP----------DVPV 1005 (1228)
T ss_pred hhCcHHHHHHHHHHHHHHHhcCCCCCCCCC--CC--------CCccccceeEEEEeeeEeeCCCCC----------Cchh
Confidence 345678889999999999998876443221 01 111122245689999999998654 4789
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHH
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
|+|+|+++++|+.+||+|||||||||.+.+|-..++ |++|.|.+||+++++ ...|+++|.|.|+|.+|. .|++|
T Consensus 1006 l~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrE 1082 (1228)
T KOG0055|consen 1006 LNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRE 1082 (1228)
T ss_pred hcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHH
Confidence 999999999999999999999999999999999887 689999999998765 356788999999999875 59999
Q ss_pred HHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 569 SVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 569 ~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
||.|+. .+.+ .++.++.+.+.+++.+. +|++.+||.+|+.|. .||||||||+|||||+++||+||||||.||+||
T Consensus 1083 NI~YG~-~~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALD 1158 (1228)
T KOG0055|consen 1083 NIAYGS-EEVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALD 1158 (1228)
T ss_pred HHhccC-CCCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhh
Confidence 999982 1111 11222333344555554 789999999999986 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 648 ARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 648 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
+++++.|.+.|++. .+|||+|+++|+++ ..+.||.|.|++ +|++++.|+++
T Consensus 1159 seSErvVQeALd~a-~~gRT~IvIAHRLS--TIqnaD~I~Vi~-~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1159 SESERVVQEALDRA-MEGRTTIVIAHRLS--TIQNADVIAVLK-NGKVVEQGTHD 1209 (1228)
T ss_pred hhhHHHHHHHHHHh-hcCCcEEEEecchh--hhhcCCEEEEEE-CCEEEecccHH
Confidence 99999999999996 55999999999987 689999999998 59999999874
No 25
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.6e-39 Score=423.26 Aligned_cols=453 Identities=19% Similarity=0.244 Sum_probs=295.4
Q ss_pred HHHHHHHHHhhccchhhhhhh--cCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHH
Q 043954 209 TNGVAELSLTITRLPVVYRQR--SFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALH 286 (1045)
Q Consensus 209 ~~~~~~i~~~~~er~vf~rE~--~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~ 286 (1045)
+.....+-....|+.-=+||. -.|+ +.++|++|..+..+...++.+++.+++.. .+---....++..++++++..
T Consensus 665 ~~~~~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~ 741 (2272)
T TIGR01257 665 YSVSMTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFS 741 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHH
Confidence 333333444556777777774 3554 57899999999987766666555444422 221122235566777888888
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhhcc-eeCCCCCCccchhh-hhhChhHHHHHHHhhhccC----CCcc
Q 043954 287 LASTSMCRLFASTFQTMVIATTVGSLALVLMFLFGGF-ILPRSSLPPWLSWG-FWISLMTYGEIGISLNEFL----APRW 360 (1045)
Q Consensus 287 ~~~~s~~~~i~a~~~~~~~A~~i~~~~~~~~~lf~Gf-~i~~~~iP~~~~W~-~yis~~~Yafeal~~nef~----~~~~ 360 (1045)
++..+++.++|+++.+..+|..+++++.....+...+ +...+.++....|+ .-+||..+++..-....++ |..|
T Consensus 742 ~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w 821 (2272)
T TIGR01257 742 TATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQW 821 (2272)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhCCCccc
Confidence 8999999999999999999999999988665553322 22345666666664 5677877776443333321 2333
Q ss_pred cccCCCccccccceEeccCccccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcccc----------------cch
Q 043954 361 QKAIAENTTIGRYTLTSHGLNFESYFYWISVAALIGFMILFDLGFILALTYLKPPKMSRAI----------------ISK 424 (1045)
Q Consensus 361 ~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~i~ili~~~l~~~~~~~l~l~~~~~~~~~~~~----------------~~~ 424 (1045)
.+... +...+ +...+...+++++...+++.++.+ -+....+..+...+ ...
T Consensus 822 ~n~~~-~~~~~-----------d~~s~~~~~~ml~~d~~lY~lL~~-Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~ 888 (2272)
T TIGR01257 822 SNIGN-SPLEG-----------DEFSFLLSMKMMLLDAALYGLLAW-YLDQVFPGDYGTPLPWYFLLQESYWLGGEGCST 888 (2272)
T ss_pred ccccc-cccCC-----------CCccHHHHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCcccccchhhhcCCccccc
Confidence 32100 00000 000011112222222222222111 11111111111000 000
Q ss_pred hhhccccCCcc--cCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccccceecCc
Q 043954 425 ERFSQLQGKED--EESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPG 502 (1045)
Q Consensus 425 ~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G 502 (1045)
.+.....+.+. +...+...+........+. ..+.....++++|+++.+.. +++.+|+|+|+++++|
T Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~-~~~~~~~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~G 956 (2272)
T TIGR01257 889 REERALEKTEPLTEEMEDPEHPEGINDSFFER-ELPGLVPGVCVKNLVKIFEP-----------SGRPAVDRLNITFYEN 956 (2272)
T ss_pred cccccccccccccccccccccccccccccccc-ccCCCCceEEEEeEEEEecC-----------CCceEEEeeEEEEcCC
Confidence 00000000000 0000000000000000000 00112346889999987631 2357999999999999
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP 580 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~ 580 (1045)
|+++|+||||||||||+|+|+|..+ |++|+|.++|+++.. ...++.+||++|++.+++.+||+||+.+.++++.
T Consensus 957 ei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg-- 1032 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG-- 1032 (2272)
T ss_pred cEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC--
Confidence 9999999999999999999999987 679999999998643 2345678999999999999999999999876542
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 043954 581 EIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKN 660 (1045)
Q Consensus 581 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 660 (1045)
.+.++.+++++++++.+||.+..|+.++ +|||||||||+|||||+.+|+|++|||||+|||+.+++.+++.|++
T Consensus 1033 -~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1033 -RSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred -CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 2334445678999999999988888874 7999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 661 VVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 661 l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
++ +|+|||++||+++ ++...+||+++|+ +|+++..|+..
T Consensus 1107 l~-~g~TIIltTHdmd-ea~~laDrI~iL~-~GkL~~~Gs~~ 1145 (2272)
T TIGR01257 1107 YR-SGRTIIMSTHHMD-EADLLGDRIAIIS-QGRLYCSGTPL 1145 (2272)
T ss_pred Hh-CCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 85 5999999999986 5778899999998 59999999763
No 26
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=357.61 Aligned_cols=202 Identities=27% Similarity=0.412 Sum_probs=186.4
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccccceEeecCCccCCCCCH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ--KTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
.++++||||+++.||++||+|||||||||+||+|+++.. |++|+|.++|.+... ...++.+|.++.+..++..||+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 459999999999999999999999999999999999987 679999999998643 3467889999988899999999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
+|||.|.+++. .+...+.+++++++.+.++|.++.|+++| ++|.|+||||+|||||++||++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999998876 45667778899999999999999999997 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|..+.+.+.+.+++++++|++||++||... |+.++||++++|+ .|++++.|+++
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh-~Gevv~~gs~~ 218 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLH-KGEVVLEGSIE 218 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEe-cCcEEEcCCHH
Confidence 999999999999999989999999999986 7888999999998 49999999875
No 27
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-44 Score=395.64 Aligned_cols=217 Identities=29% Similarity=0.419 Sum_probs=195.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|++..+ ++..+|+|+|++|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 57888888765 35679999999999999999999999999999999999988 6799999999998
Q ss_pred Ccc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
... ..+|.+|+|+|+..+||+|||+||+.|+.+.+ ....+++.+++++++++.++|++..+++. ++||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 653 35678999999999999999999999998743 23456677889999999999999988886 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||.. |.+.++|||.+|+ +|++...|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCC
Confidence 9999999999999999999999999999999999999999866 999999999976 7899999999998 599999999
Q ss_pred CCc
Q 043954 701 LGR 703 (1045)
Q Consensus 701 ~~~ 703 (1045)
+++
T Consensus 221 P~e 223 (352)
T COG3842 221 PEE 223 (352)
T ss_pred HHH
Confidence 864
No 28
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-44 Score=392.86 Aligned_cols=216 Identities=27% Similarity=0.416 Sum_probs=195.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|++..+. +..+|+|+|++|++||+++|+||||||||||||+|||+.+ |++|+|.++|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 577888887652 2229999999999999999999999999999999999988 6799999999998
Q ss_pred Cc-ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQ-KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
+. ...+|.+++|+|+..++|+|||+||+.|+.+.+ ..++++.+++++++.+.|+|++..|++. ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 76 334578999999999999999999999998776 3467788899999999999999999986 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||||||||+++|++++||||.|+||...+..+...|+++.++ |.|+|.+|||.. |...++||+.+|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998876 899999999975 7889999999998 699999999
Q ss_pred CCc
Q 043954 701 LGR 703 (1045)
Q Consensus 701 ~~~ 703 (1045)
+.+
T Consensus 218 p~e 220 (338)
T COG3839 218 PLE 220 (338)
T ss_pred hHH
Confidence 854
No 29
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-44 Score=376.35 Aligned_cols=207 Identities=29% Similarity=0.442 Sum_probs=186.8
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe---eCCc-ccccccceEeecCCccCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY---PKVQ-KTFARISGYCEQTDIHSP 562 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~---~~~~-~~~~~~~~~v~q~~~~~~ 562 (1045)
+...+++|||++|+.||++||+|||||||||||++|+|+.. |++|.|.+||. +.++ ....|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 34678999999999999999999999999999999999988 67999999999 5444 234478999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP 642 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP 642 (1045)
+|||.|||.|+.+.+ ....++.+.+.+++++|+.++|++..+... ..|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998776 233456777889999999999999988876 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 643 TSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 643 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
+++||...+.++.+.|+++.++ |.|++++|||+. +..+.+||+++|+ +|+|...|++++
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~-~G~Ieqvg~p~e 224 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLN-QGRIEQVGPPDE 224 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEec-CCeeeeeCCHHH
Confidence 9999999999999999999877 999999999986 7999999999998 599999998753
No 30
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.1e-44 Score=349.38 Aligned_cols=212 Identities=26% Similarity=0.363 Sum_probs=185.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++|+||+..|+ .+ +++|+||||+|++||++-|+||||||||||||+|.+... |++|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~-----------~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP-----------GG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC-----------CC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 57888887653 23 679999999999999999999999999999999999877 67999999999864
Q ss_pred c------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 Q------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
. .-.||.+|.|+||..+++..||.||+.|+.... ..+.++.++++.++++.+||.+..+... ..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccC
Confidence 3 125788999999999999999999999987654 3456777889999999999998888775 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHh-cceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEA-FDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG~~~ 696 (1045)
|||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||++.||+.. +.+. -.+++.|+ +|+++
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~--lv~~~~~rvl~l~-~Grl~ 216 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE--LVNRMRHRVLALE-DGRLV 216 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH--HHHhccCcEEEEe-CCEEE
Confidence 99999999999999999999999999999999999999999999999999999999954 4544 46778887 69998
Q ss_pred EecC
Q 043954 697 YSGM 700 (1045)
Q Consensus 697 ~~G~ 700 (1045)
.+..
T Consensus 217 ~d~~ 220 (223)
T COG2884 217 RDES 220 (223)
T ss_pred eccc
Confidence 7654
No 31
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.2e-44 Score=434.02 Aligned_cols=277 Identities=26% Similarity=0.384 Sum_probs=216.6
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHhcCCCCCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEec
Q 043954 390 SVAALIGFMILFD-LGFILALTYLKPPKMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKD 468 (1045)
Q Consensus 390 ~i~ili~~~l~~~-~~~~l~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 468 (1045)
++|.++++..+.. +...+.-....+..++....+.+|+.++.+.++|.+.+.. . ...+.-+..++++|
T Consensus 408 TlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~---~--------~~~~~~~g~I~~~n 476 (709)
T COG2274 408 TLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT---L--------IHLPKLQGEIEFEN 476 (709)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc---c--------ccccccCceEEEEE
Confidence 3455555544332 2222222222335677888899999999988776433210 0 01122345789999
Q ss_pred eEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---c
Q 043954 469 VRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---K 545 (1045)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~ 545 (1045)
++|.|.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++ |.+|+|++||.|+.. .
T Consensus 477 vsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 477 VSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLA 543 (709)
T ss_pred EEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeHHhcCHH
Confidence 9998742 33479999999999999999999999999999999999998 679999999998653 5
Q ss_pred cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHH-----HHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 546 TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSET-----KARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 546 ~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
..|+.+|||+|++.++. .|++||+.++.. ..+.++ +.+.+++.++ +++..+||.+|+.|. +|||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p-----~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E~G~-~LSGGQ 614 (709)
T COG2274 544 SLRRQVGYVLQDPFLFS-GSIRENIALGNP-----EATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGEGGA-NLSGGQ 614 (709)
T ss_pred HHHhheeEEcccchhhc-CcHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hcccccccccccCCC-CCCHHH
Confidence 67889999999877664 699999988642 223222 2233444444 578889999998885 899999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||++|||||+++|+||+||||||+||+.+++.|.+.|+++.+ |+|+|+++|+++ ..+.||||++|+ +|+++.+|+
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~-~Gkiv~~gs 690 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLD-QGKIVEQGS 690 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEcc-CCceeccCC
Confidence 9999999999999999999999999999999999999999854 799999999986 789999999998 599999999
Q ss_pred CCc
Q 043954 701 LGR 703 (1045)
Q Consensus 701 ~~~ 703 (1045)
.++
T Consensus 691 ~~e 693 (709)
T COG2274 691 HEE 693 (709)
T ss_pred HHH
Confidence 753
No 32
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-43 Score=352.31 Aligned_cols=220 Identities=24% Similarity=0.322 Sum_probs=186.2
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCC---CCCeEEEEEEEC
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIQGEIRVG 538 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~---~~~~~~G~I~~~ 538 (1045)
..++.+|+++.| +++++|+|||++|++++++|++||||||||||||++.... +....+|+|.++
T Consensus 6 ~~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 346788998876 3578999999999999999999999999999999999843 333578999999
Q ss_pred CeeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 043954 539 GYPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQ 613 (1045)
Q Consensus 539 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 613 (1045)
|+++.. ...|+.+|+|+|.++-|| +|++||+.|+.++..- .+++.++.+++.++...|.+.-..+....+
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~---~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa- 147 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI---KDKELDEIVESSLKKAALWDEVKDRLHKSA- 147 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhcc---chHHHHHHHHHHHHHhHhHHHhHHHhhCCc-
Confidence 998643 346888999999999999 8999999999876532 225667889999998888654333333333
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.+|||||+||++|||||+.+|+|||||||||+|||.+..+|-+++.+|++ .-|||++||.+. ...+..|+...+. .|
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~-~G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFY-LG 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhc-cc
Confidence 37999999999999999999999999999999999999999999999974 789999999976 5778899999998 58
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
++++.|+.+
T Consensus 225 ~LvE~g~T~ 233 (253)
T COG1117 225 ELVEFGPTD 233 (253)
T ss_pred EEEEEcCHH
Confidence 999999864
No 33
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-42 Score=337.17 Aligned_cols=197 Identities=26% Similarity=0.379 Sum_probs=174.0
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccccceEeecCCccCCCCCHHHHHHH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-TFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
.+++.+++||++||+||||||||||||+|+|... |.+|+|.+||++.... ...|-++.++|+.++|.++||++|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678899999999999999999999999999987 6799999999987543 345678999999999999999999988
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 652 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~ 652 (1045)
+..-.+ ..+ ++.+++++.++.++||.+..++..+ +|||||||||++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 753211 223 3445678999999999999988864 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 653 IVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 653 ~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
++..++.+++++ +.|++++||+|+ +..+.+|++++++ +||+.+.|+..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~-~Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLD-NGRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEe-CCEEEeeccHH
Confidence 999999999865 889999999997 7899999999998 59999999863
No 34
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.5e-42 Score=383.63 Aligned_cols=216 Identities=26% Similarity=0.395 Sum_probs=189.5
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+|+|+|..+ |++|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 3578999998652 3569999999999999999999999999999999999987 579999999998
Q ss_pred CCc--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 542 KVQ--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 542 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
... ...++.+||++|++.+++.+||+||+.+.+.++ ..+..+.+++++++++.++|.+..++.++ +||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHH
Confidence 643 234567999999999999999999999866543 12334445668899999999988898884 79999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|+ +|++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~-~G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIE-EGRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEC
Confidence 999999999999999999999999999999999999999999878999999999986 6788999999998 58999999
Q ss_pred CCC
Q 043954 700 MLG 702 (1045)
Q Consensus 700 ~~~ 702 (1045)
+++
T Consensus 221 ~~~ 223 (306)
T PRK13537 221 APH 223 (306)
T ss_pred CHH
Confidence 863
No 35
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.1e-41 Score=384.05 Aligned_cols=218 Identities=26% Similarity=0.331 Sum_probs=188.5
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++.. .+.+++|+||||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5788998876321 112469999999999999999999999999999999999987 67999999999864
Q ss_pred cc------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 QK------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ..++.++|++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|... +.||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999876432 2345556677899999999998888876 3799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|+|++||+++ .+.+.||++++|+ +|+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999876 999999999976 5678899999998 59999
Q ss_pred EecCCC
Q 043954 697 YSGMLG 702 (1045)
Q Consensus 697 ~~G~~~ 702 (1045)
+.|++.
T Consensus 221 ~~g~~~ 226 (343)
T TIGR02314 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
No 36
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9e-41 Score=434.97 Aligned_cols=443 Identities=19% Similarity=0.205 Sum_probs=284.9
Q ss_pred HHHHHHhhccchhhhhhh-------cCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhcc--CcccchhHHHHHHHHH
Q 043954 212 VAELSLTITRLPVVYRQR-------SFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVI--GYSPEIERFFCQFFLL 282 (1045)
Q Consensus 212 ~~~i~~~~~er~vf~rE~-------~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~--GL~~~~~~Ff~f~l~~ 282 (1045)
|+-++..+.-.+|--||. -+|. ++.+|.++..+.|+...++..+++.++++..- ++. +...+...++++
T Consensus 1690 ~sfi~asfv~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll 1767 (2272)
T TIGR01257 1690 MSFVPASFVLYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALL 1767 (2272)
T ss_pred HHHHHHHHheeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHH
Confidence 444444443344433333 3444 88999999999999999998888876665321 222 224555566788
Q ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH---HHhhhccee----C---CCCCCccchhhhhhChhHHHH-HHHh
Q 043954 283 FALHLASTSMCRLFASTFQTMVIATTVGSLALVL---MFLFGGFIL----P---RSSLPPWLSWGFWISLMTYGE-IGIS 351 (1045)
Q Consensus 283 ~l~~~~~~s~~~~i~a~~~~~~~A~~i~~~~~~~---~~lf~Gf~i----~---~~~iP~~~~W~~yis~~~Yaf-eal~ 351 (1045)
++..+++.-+.+++|-++.+...|.....++..+ ......+++ + ...+...++|+..+.| .|++ ++++
T Consensus 1768 ~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P-~f~lg~gl~ 1846 (2272)
T TIGR01257 1768 MLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFP-HFCLGRGLI 1846 (2272)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCc-hhhhHHHHH
Confidence 8889999999999999999999887654433322 111222211 1 1123457788887765 4555 3433
Q ss_pred hhccCCCcccccCCCccccccceEeccCccccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhcccc
Q 043954 352 LNEFLAPRWQKAIAENTTIGRYTLTSHGLNFESYFYWISVAALIGFMILFDLGFILALTYLKPPKMSRAIISKERFSQLQ 431 (1045)
Q Consensus 352 ~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~i~ili~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~r~~~~~ 431 (1045)
. =......... +...|...... .+..+. ....+..+.+..+++.++. +.+.... ..+ +.....
T Consensus 1847 ~-l~~~~~~~~~---~~~~~~~~~~~-~~~~~~--~g~~ll~m~~~~iv~flLl-~~ie~~~---~~~------~~~~~~ 1909 (2272)
T TIGR01257 1847 D-LALSQAVTDV---YAQFGEEHSAN-PFQWDL--IGKNLVAMAVEGVVYFLLT-LLIQHHF---FLS------RWIAEP 1909 (2272)
T ss_pred H-HHHhHHHHHH---HHhhcccccCC-ccchhh--ccHHHHHHHHHHHHHHHHH-HHHHhhh---hhh------hhcccc
Confidence 1 1100000000 00011100000 000000 1111112222111111111 1111100 000 000000
Q ss_pred CCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCC
Q 043954 432 GKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVS 511 (1045)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~s 511 (1045)
..++....+. +...+...... ....+-.++++|+++.+. .+++.+|+|||+.|++||++||+|||
T Consensus 1910 ~~~~~~~eD~--DV~~Er~rV~~--~~~~~~~L~v~nLsK~Y~-----------~~~~~aL~~ISf~I~~GEi~gLLG~N 1974 (2272)
T TIGR01257 1910 AKEPIFDEDD--DVAEERQRIIS--GGNKTDILRLNELTKVYS-----------GTSSPAVDRLCVGVRPGECFGLLGVN 1974 (2272)
T ss_pred CcCcCCCchh--HHHHHHHHHhc--cCCCCceEEEEEEEEEEC-----------CCCceEEEeeEEEEcCCcEEEEECCC
Confidence 0000000000 00000000000 001123478999998763 11356999999999999999999999
Q ss_pred CCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHH
Q 043954 512 GAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKAR 589 (1045)
Q Consensus 512 GaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~ 589 (1045)
|||||||+|+|+|..+ |++|+|.++|+++.. ...++.+||++|++.+++.+||+||+.+.+.++. .++++.++
T Consensus 1975 GAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~ 2049 (2272)
T TIGR01257 1975 GAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEK 2049 (2272)
T ss_pred CCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHH
Confidence 9999999999999987 579999999998642 2345679999999999999999999998776642 23344456
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 043954 590 FVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTV 669 (1045)
Q Consensus 590 ~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 669 (1045)
.++++++.++|.+..|+.++ +||||||||++||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||
T Consensus 2050 ~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TII 2124 (2272)
T TIGR01257 2050 VANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVV 2124 (2272)
T ss_pred HHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 78899999999988898884 7999999999999999999999999999999999999999999999988899999
Q ss_pred EEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 670 CTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 670 ~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
++||+++ ++.+.|||+++|. +|+++..|++
T Consensus 2125 LtTH~me-e~e~lcDrV~IL~-~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2125 LTSHSME-ECEALCTRLAIMV-KGAFQCLGTI 2154 (2272)
T ss_pred EEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999986 6888999999998 5999999986
No 37
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-42 Score=352.61 Aligned_cols=217 Identities=24% Similarity=0.342 Sum_probs=182.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++.+|+++.+.... ...++|+|||+++.+||++||+|+||||||||.++|+|+.+ |.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 467889988775321 11269999999999999999999999999999999999988 5799999999875
Q ss_pred Ccc----cccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCC
Q 043954 543 VQK----TFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~ 615 (1045)
... .+.+.+.+|+||+ .+.|..||++.|.-+... ...++.+ +++.++++.+||.+ .+++.. .+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~P-----~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRRP-----HE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcCc-----hh
Confidence 442 3567889999987 578999999999876543 2233333 33899999999975 445543 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||||+||||||+.+|++|+||||||+||...+.+|+++|.+++++ |.|.|++|||.+ -+..+|||+++|+ .|+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~-~G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMD-NGQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeee-CCe
Confidence 9999999999999999999999999999999999999999999999876 789999999987 4788999999998 599
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
+++.++.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999864
No 38
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=386.06 Aligned_cols=216 Identities=25% Similarity=0.374 Sum_probs=189.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |.+|+|.++|+++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 367888888652 13569999999999999999999999999999999999987 6799999999986
Q ss_pred Ccc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
... ..++.+|||+|+..++|++||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.+ ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 432 23467999999999999999999999986533 2345555677899999999998888887 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|+ +|+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECC
Confidence 9999999999999999999999999999999999999999876 899999999986 6889999999998 599999998
Q ss_pred CC
Q 043954 701 LG 702 (1045)
Q Consensus 701 ~~ 702 (1045)
++
T Consensus 219 ~~ 220 (356)
T PRK11650 219 PV 220 (356)
T ss_pred HH
Confidence 75
No 39
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-41 Score=411.49 Aligned_cols=257 Identities=28% Similarity=0.393 Sum_probs=204.5
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
..++..+..++++.++..|..+.... . +..+......++|+||+|+|+.++ +.+||+|+|
T Consensus 314 f~~a~~aa~~I~~~i~~~~~i~~~~~--~--------~~~~~~~~g~ief~nV~FsYPsRp----------dv~Il~g~s 373 (1228)
T KOG0055|consen 314 FAKARAAAYRIFETIDRKPSIDPYSK--G--------GRVLSSIKGEIEFRNVCFSYPSRP----------DVKILKGVS 373 (1228)
T ss_pred HhccccchHHHHHHhcCCCCCCcccc--c--------CCcccccccceEEEEEEecCCCCC----------cchhhCCeE
Confidence 45677788899988877655432210 0 001112345789999999997653 467999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
+.|++|+.+||+|||||||||++++|.++++ |.+|+|.+||.++.. +..|..+|.|.|+|.++ ..|++||+.|+
T Consensus 374 l~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G 450 (1228)
T KOG0055|consen 374 LKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYG 450 (1228)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcC
Confidence 9999999999999999999999999999998 689999999998754 44677899999999665 56999999986
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAI 653 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~ 653 (1045)
..-....++.++.+.+.+.+.+. .|++..||.+|+.|. .||||||||+||||||++||+|||||||||+||+++++.
T Consensus 451 ~~dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~ 527 (1228)
T KOG0055|consen 451 KPDATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERV 527 (1228)
T ss_pred CCcccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHH
Confidence 42111111112222222344443 578899999999887 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 654 VMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 654 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
|.+.|++. .+|+|.|+++|+++ ..+.+|++++|+ +|++++.|.+++
T Consensus 528 Vq~ALd~~-~~grTTivVaHRLS--tIrnaD~I~v~~-~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 528 VQEALDKA-SKGRTTIVVAHRLS--TIRNADKIAVME-EGKIVEQGTHDE 573 (1228)
T ss_pred HHHHHHHh-hcCCeEEEEeeehh--hhhccCEEEEEE-CCEEEEecCHHH
Confidence 99999886 45999999999987 567799999998 599999999865
No 40
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.9e-41 Score=384.88 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=190.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |.+|+|.++|++.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478899988652 3568999999999999999999999999999999999987 6799999999986
Q ss_pred Cc-ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQ-KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
.. ...++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.++|++..|+.. ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 53 223567999999999999999999999986543 2345566778999999999999888876 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|+||||||+||+.++.++.+.|+++.++ |.|+|++||++. ++.+++|++++|+ +|+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~-~G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMN-HGVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999775 899999999986 6889999999998 599999998
Q ss_pred CC
Q 043954 701 LG 702 (1045)
Q Consensus 701 ~~ 702 (1045)
++
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 74
No 41
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-41 Score=367.07 Aligned_cols=213 Identities=24% Similarity=0.372 Sum_probs=182.1
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5678887652 3469999999999999999999999999999999999987 579999999987643
Q ss_pred ------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 545 ------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 545 ------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
...++.++|++|++.+++.+||+||+.+...... ..+.++.+++++++++.+++.+..++.++ +|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 1235678999999999999999999988643221 12344445678889999999887777764 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ +|++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~-~G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999874 899999999986 5778899999998 589999
Q ss_pred ecCC
Q 043954 698 SGML 701 (1045)
Q Consensus 698 ~G~~ 701 (1045)
.|++
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 9875
No 42
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=383.10 Aligned_cols=215 Identities=22% Similarity=0.399 Sum_probs=190.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 578899988652 3568999999999999999999999999999999999987 6799999999987
Q ss_pred Ccc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
... ..++.++||+|+..++|++||+||+.|+...+ ..++++.+++++++++.++|.+..++.. +.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 23467999999999999999999999986543 2345566778999999999998888776 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++||++. ++.+++|++++|+ +|+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~-~G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMN-KGKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999775 899999999986 6889999999998 599999998
Q ss_pred CC
Q 043954 701 LG 702 (1045)
Q Consensus 701 ~~ 702 (1045)
++
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 75
No 43
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.4e-41 Score=382.33 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=189.4
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEE--EEEEECCe
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQ--GEIRVGGY 540 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~--G~I~~~g~ 540 (1045)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |.+ |+|.++|+
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 467889988652 3469999999999999999999999999999999999987 568 99999999
Q ss_pred eCCcc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 541 PKVQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 541 ~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
+.... ..++.++||+|+..+++.+||+||+.|+...+ ..++++.+++++++++.++|++..|+.+ ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 86432 23467899999999999999999999986543 2345556677999999999999888887 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT--GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |.|+|++||+++ ++...+|++++|+ +|+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 6789999999998 599999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+++
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99875
No 44
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.3e-41 Score=377.76 Aligned_cols=216 Identities=24% Similarity=0.352 Sum_probs=189.0
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. ++.+|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 4588999998762 3569999999999999999999999999999999999987 579999999998
Q ss_pred CCc--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 542 KVQ--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 542 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
... ...++.+||++|+..+++.+||+||+.+....+. ....+.+++++++++.++|.+..++.++ +||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHH
Confidence 643 2345679999999999999999999997654431 2333345567889999999998898884 79999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|+ +|++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~-~G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-AGRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 999999999999999999999999999999999999999999888999999999986 6788999999998 58999999
Q ss_pred CCC
Q 043954 700 MLG 702 (1045)
Q Consensus 700 ~~~ 702 (1045)
+++
T Consensus 255 ~~~ 257 (340)
T PRK13536 255 RPH 257 (340)
T ss_pred CHH
Confidence 863
No 45
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-41 Score=357.39 Aligned_cols=215 Identities=26% Similarity=0.370 Sum_probs=189.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|++|+++. + ..+|+|+|+++++||.++|+||||||||||+++|+|+.+ |.+|+|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~-----------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG-----------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC-----------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 3578899987642 2 579999999999999999999999999999999999988 5789999999985
Q ss_pred C----cccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 543 V----QKTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ~----~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
. ....++.+|||+|++ ..+..-||.|.+.|+.... ..+.++.+++++++++.+|+.+.+++.. ..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccC
Confidence 4 345678899999986 4566779999999986432 3556678889999999999999988876 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
|||||||+||.+|+.+|++|+|||||||||+..++++++.++++.++ |+|+|++||+.. .+.+.+|++++|+ +|+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~-~G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLD-DGKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEE-CCEEe
Confidence 99999999999999999999999999999999999999999999987 689999999986 6788899999998 59999
Q ss_pred EecCC
Q 043954 697 YSGML 701 (1045)
Q Consensus 697 ~~G~~ 701 (1045)
++|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99986
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=355.42 Aligned_cols=210 Identities=29% Similarity=0.436 Sum_probs=178.5
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ ++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4677777552 3569999999999999999999999999999999999887 579999999988643
Q ss_pred c-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 545 K-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 545 ~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
. ..++.++|++|++.+++.+|++||+.+..... ....+..+++++++++.+++.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHH
Confidence 2 23456899999988888999999998865332 12333445568899999999887777763 799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+ +|++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMN-EGRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999764 899999999986 5778899999998 58888765
No 47
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-42 Score=339.36 Aligned_cols=207 Identities=24% Similarity=0.370 Sum_probs=184.8
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccccceEeecCCccCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKT----FARISGYCEQTDIHSP 562 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~----~~~~~~~v~q~~~~~~ 562 (1045)
+++++++|||+++++||+++|+|||||||||.+.++.|+.+ |++|+|.+||.+++... .|.-+||+||+...|-
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 56789999999999999999999999999999999999988 67999999999976532 2345899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP 642 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP 642 (1045)
.+||+|||+.....+.. ....++++++++++++.+++.+..+++- ..||||||||+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999987666532 2233456667889999999999999875 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 643 TSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 643 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
++|.||.+..+|.++++.|++.|..|+++-|+.. |....|||.+++. .|+++.+|++++
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~-~G~vla~G~p~e 225 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIIS-DGKVLAEGSPEE 225 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEe-cCeEEecCCHHH
Confidence 9999999999999999999999999999999987 7899999999998 599999999864
No 48
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=9.8e-41 Score=379.07 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=188.0
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67888887652 3469999999999999999999999999999999999987 57999999999864
Q ss_pred cc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 544 QK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 544 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
.. ..++.++|++|+..+++.+||+||+.|+...+.. ...+.++.+++++++++.++|++..++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346789999999999999999999987643211 12344555677899999999998888876 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.+.+|++++|+ +|++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~-~G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMS-QGNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999876 899999999986 6889999999998 599999998
Q ss_pred CC
Q 043954 701 LG 702 (1045)
Q Consensus 701 ~~ 702 (1045)
++
T Consensus 221 ~~ 222 (353)
T PRK10851 221 PD 222 (353)
T ss_pred HH
Confidence 64
No 49
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-40 Score=356.33 Aligned_cols=209 Identities=24% Similarity=0.333 Sum_probs=177.1
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|++++++. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 568888886631 12469999999999999999999999999999999999987 57999999998763
Q ss_pred cc------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 QK------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ..++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..++.++ +||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALPM-----QLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 21 234678999999989999999999998754321 2233445668899999999887777763 799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|++ |++
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i 216 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GRL 216 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 99999999999999999999999999999999999999999999877999999999986 56678999999984 653
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-40 Score=354.83 Aligned_cols=216 Identities=26% Similarity=0.388 Sum_probs=181.6
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+... ...+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 467777765310 011569999999999999999999999999999999999887 579999999988642
Q ss_pred ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 043954 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRL 624 (1045)
Q Consensus 545 ~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv 624 (1045)
.++.++|++|++.+++.+|++||+.+....+. ...+...+.++++++.+++.+..++.+ ++||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 34668999999988888999999988654331 233344566889999999988777776 37999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEec-CcEEEEecCCC
Q 043954 625 TIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKA-GGRIIYSGMLG 702 (1045)
Q Consensus 625 ~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~~ 702 (1045)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|+|++||++. ++.+.||++++|++ +|++++.++++
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999999999999865 4899999999986 57788999999984 48999988753
No 51
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.6e-41 Score=411.90 Aligned_cols=248 Identities=23% Similarity=0.367 Sum_probs=193.8
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++..... . .... +.....++++|+++.+. +++++|+|+
T Consensus 313 ~~~~~~~~~~ri~~~l~~~~~~~~~~---~----~~~~----~~~~~~i~~~~vsf~~~------------~~~~vL~~i 369 (588)
T PRK11174 313 AKAQAVGAAESLVTFLETPLAHPQQG---E----KELA----SNDPVTIEAEDLEILSP------------DGKTLAGPL 369 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCC---c----cccC----CCCCceEEEEeeEEecc------------CCCeeeeee
Confidence 45667778899988876543211100 0 0000 00123589999997542 235699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++++|||.+||+||||||||||+++|+|.+ + .+|+|.+||+++.+ ..+++.++||+|++.++. .|++|||.+
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~ 445 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLL 445 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhc
Confidence 9999999999999999999999999999988 3 48999999998653 456788999999887765 599999998
Q ss_pred HhhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 573 SAWLRLPPEIDSETKAR-----FVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
+. ++.++++..+ .+++.++ .+++..||.+|+.|. +||||||||++|||||+++|+||+||||||+||
T Consensus 446 g~-----~~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~G~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD 517 (588)
T PRK11174 446 GN-----PDASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517 (588)
T ss_pred CC-----CCCCHHHHHHHHHHhCHHHHHH--hcccccccccccCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 63 1233333221 2223333 356788999998875 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 648 ARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 648 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
+++++.|.+.|+++. +++|+|++||+++ ..+.+|+|++|+ +|++++.|+.+
T Consensus 518 ~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~-~G~i~e~G~~~ 568 (588)
T PRK11174 518 AHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQ-DGQIVQQGDYA 568 (588)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEe-CCeEeecCCHH
Confidence 999999999999885 5899999999985 678899999998 59999999864
No 52
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-41 Score=378.10 Aligned_cols=246 Identities=22% Similarity=0.369 Sum_probs=197.9
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..++...|.+|+.++.+.+++.... .+ ..+..+-.++++|++|+++. .+.++|+|+
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~~~~-----~~--------~~~~~~~~l~~~~vsF~y~~-----------~~~~~L~~~ 357 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEVTFP-----DE--------QTATTGQALELRNVSFTYPG-----------QQTKALKNF 357 (573)
T ss_pred HhhHHHHHHHHHhhhccCCcccCCC-----cc--------ccCCccceeeeccceeecCC-----------Cccchhhcc
Confidence 4456677889998877655432211 00 01111226889999998753 345799999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||.+||+|+||||||||+++|+|.++ |.+|+|.+||.++.. ...++.+++++|...+ +..|++|||.+
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl-F~~Tlr~NL~l 434 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRL 434 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcChhhCChhhHHHHHhhhccchHH-HHHHHHHHHhh
Confidence 99999999999999999999999999999887 679999999988643 3466788999996555 45699999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELD-------DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. ++.++++ +.++++++||+ +..|+.+|+.| +.||||||||++|||+|++|.++++|||||.|
T Consensus 435 A~-----~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G-~~LSGGE~rRLAlAR~LL~dapl~lLDEPTeg 504 (573)
T COG4987 435 AN-----PDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEG 504 (573)
T ss_pred cC-----CCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCC-CcCCchHHHHHHHHHHHHcCCCeEEecCCccc
Confidence 64 2234443 55667777664 46778899887 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.|++++++.|.+.++ |+|+|++||+.. -.+.||+|++|+ +|+++++|..+
T Consensus 505 LD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~-~Gkiie~G~~~ 557 (573)
T COG4987 505 LDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLD-NGKIIEEGTHA 557 (573)
T ss_pred CChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEE-CCeeeecCCHH
Confidence 999999999999998765 899999999986 478999999998 59999999875
No 53
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.1e-40 Score=378.05 Aligned_cols=215 Identities=24% Similarity=0.356 Sum_probs=189.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|+++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899988652 3569999999999999999999999999999999999987 5799999999986
Q ss_pred Ccc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
... ..++.++|++|+..++|++||+||+.|+...+ ..++++.+++++++++.++|.+..++.+ .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 432 23467899999999999999999999986433 2344555667899999999998888887 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|+ +|+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999875 899999999986 6889999999998 599999998
Q ss_pred CC
Q 043954 701 LG 702 (1045)
Q Consensus 701 ~~ 702 (1045)
++
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 64
No 54
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-40 Score=378.15 Aligned_cols=215 Identities=22% Similarity=0.371 Sum_probs=189.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |.+|+|.++|++.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588999988652 3469999999999999999999999999999999999987 5799999999986
Q ss_pred Cc-ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQ-KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
.. ...++.+||++|+..++|++||.||+.|+.+.+ ..++++.+++++++++.++|.+..++.+ ++||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234567999999999999999999999976543 2345556677899999999998888876 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|+ +|+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999986 6889999999998 599999998
Q ss_pred CC
Q 043954 701 LG 702 (1045)
Q Consensus 701 ~~ 702 (1045)
++
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 64
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-40 Score=354.72 Aligned_cols=212 Identities=26% Similarity=0.359 Sum_probs=181.6
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 5677777552 3569999999999999999999999999999999999877 579999999987532
Q ss_pred --ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 545 --KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 545 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
...++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHH
Confidence 2234568999999989999999999988754331 2333345568899999999887788764 79999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|++|||||+.+|++++|||||+|||+.+++.+.+.|++++++ |+|+|++||+++ ++.+.+|++++|+ +|+++..|++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIID-HGRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999986 5778899999998 5899988865
No 56
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-41 Score=382.98 Aligned_cols=214 Identities=27% Similarity=0.456 Sum_probs=182.7
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
++.++.+|+++.++. + +++++|+|+++++|+.+||+|+||||||||+++|+|+.+ +++|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~~-----------g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYPD-----------G-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecCC-----------C-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCc
Confidence 456777899997642 2 379999999999999999999999999999999999988 57999999998
Q ss_pred eCC---cccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC------CccccccccCC
Q 043954 541 PKV---QKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL------DDIKDSLVGIP 611 (1045)
Q Consensus 541 ~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L------~~~~~~~vg~~ 611 (1045)
+.. ...+++.++||+|++.+++. |++||+.++.. ..++++ +.++++..++ ++..|+.+|+.
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige~ 453 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDEE----IIAALDQAGLLEFVPKPDGLDTVIGEG 453 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHHH----HHHHHHHhcHHHhhcCCCcccchhccC
Confidence 754 45688999999998887764 99999998631 233333 4555555554 45778999988
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
| ++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|++++||++. ....+|+|++|+
T Consensus 454 G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld- 528 (559)
T COG4988 454 G-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD- 528 (559)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec-
Confidence 7 58999999999999999999999999999999999999999999999987 599999999974 678899999998
Q ss_pred CcEEEEecCCCc
Q 043954 692 GGRIIYSGMLGR 703 (1045)
Q Consensus 692 gG~~~~~G~~~~ 703 (1045)
+|++++.|.+++
T Consensus 529 ~G~l~~~g~~~~ 540 (559)
T COG4988 529 NGRLVEQGTHEE 540 (559)
T ss_pred CCceeccCCHHH
Confidence 599999998753
No 57
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.3e-40 Score=369.83 Aligned_cols=215 Identities=25% Similarity=0.368 Sum_probs=185.5
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+
T Consensus 3 ~~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~ 67 (303)
T TIGR01288 3 VAIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEP 67 (303)
T ss_pred cEEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 3578899988652 3569999999999999999999999999999999999887 579999999987
Q ss_pred CCc--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 542 KVQ--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 542 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
... ...++.+||++|++.+++.+||+||+.+..... ..+.++.+++++++++.++|.+..++.++ +||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG 139 (303)
T TIGR01288 68 VPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGG 139 (303)
T ss_pred CcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHH
Confidence 632 223567899999998999999999998754432 12333444567889999999988888874 79999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|+ +|++++.|
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 217 (303)
T TIGR01288 140 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEG 217 (303)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 999999999999999999999999999999999999999999888999999999986 6778999999998 58999999
Q ss_pred CC
Q 043954 700 ML 701 (1045)
Q Consensus 700 ~~ 701 (1045)
++
T Consensus 218 ~~ 219 (303)
T TIGR01288 218 RP 219 (303)
T ss_pred CH
Confidence 75
No 58
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.1e-40 Score=371.29 Aligned_cols=202 Identities=28% Similarity=0.438 Sum_probs=178.6
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccccceEeecCCccCCCCC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ--KTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lT 565 (1045)
++++|+|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999987 579999999988643 234567899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
|+||+.+.+.++. .+..+.+++++++++.++|.+..++.++ .||||||||++|||||+++|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765431 2334445668899999999988888874 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|+ +|++++.|++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIID-HGRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999888999999999986 6778999999998 5999999975
No 59
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-40 Score=378.08 Aligned_cols=215 Identities=25% Similarity=0.397 Sum_probs=187.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|..+ |.+|+|.++|++.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888888652 3469999999999999999999999999999999999987 5799999999986
Q ss_pred Ccc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
... ..++.++|++|+..+++.+||+||+.+....+ ..+.++.+++++++++.++|.+..++.++ +||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 432 23456899999999999999999999876433 12344555678999999999988888774 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|+|||||+|||+.+++.+.+.|+++.++ |.|+|++||+++ ++.+.||++++|+ +|+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 6788999999998 599999998
Q ss_pred CC
Q 043954 701 LG 702 (1045)
Q Consensus 701 ~~ 702 (1045)
++
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 64
No 60
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-40 Score=351.15 Aligned_cols=209 Identities=26% Similarity=0.422 Sum_probs=178.7
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 5677777542 3469999999999999999999999999999999999887 579999999987643
Q ss_pred ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 043954 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRL 624 (1045)
Q Consensus 545 ~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv 624 (1045)
..++.++|++|+..+++.+|++||+.+....+. ....+.++.++++++.+++.+..++.+ ++||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345678999999988999999999988654431 223344566889999999988777766 37999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 625 TIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 625 ~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
+|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|+ +|++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN-KGRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEe-CCEEEecC
Confidence 9999999999999999999999999999999999999877899999999986 5678899999998 58887654
No 61
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.5e-40 Score=350.82 Aligned_cols=210 Identities=26% Similarity=0.404 Sum_probs=179.0
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 5778877652 2469999999999999999999999999999999999987 579999999988643
Q ss_pred c-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 545 K-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 545 ~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
. ..++.++|++|++.+++..|++||+.+....+ ....++.+++++++++.+++.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHH
Confidence 2 22356899999998888999999998865432 12334445668889999999887787763 799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|+ +|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMN-DGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999875 899999999985 5778899999998 58998765
No 62
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6.9e-41 Score=408.09 Aligned_cols=247 Identities=30% Similarity=0.437 Sum_probs=199.1
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
.+++..+.+|+.++.+.+++...... . .......++|+|++|.++. ++++|+|+|
T Consensus 295 ~~~~~~a~~ri~~~l~~~~~~~~~~~----~---------~~~~~~~I~f~~vsf~y~~------------~~~vl~~is 349 (567)
T COG1132 295 LQRASAAAERLFELLDEEPEVEDPPD----P---------LKDTIGSIEFENVSFSYPG------------KKPVLKDIS 349 (567)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCC----C---------CCCCCCeEEEEEEEEEcCC------------CCccccCce
Confidence 45667788999988876543221100 0 1112345899999997742 467999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
++++|||.+||+||||||||||+|+|.|+++ +.+|+|.+||+++.+ ...|+.+++|+|++.++. .||+|||.++
T Consensus 350 ~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g 426 (567)
T COG1132 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALG 426 (567)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcC
Confidence 9999999999999999999999999999988 579999999998654 457788999999888776 7999999987
Q ss_pred hhhcCCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 574 AWLRLPPEIDSETK-----ARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~-----~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
.. +.++++. .+.+++.++ ++++..||.+|+.|. .||||||||++||||+++||+||+||||||+||+
T Consensus 427 ~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge~G~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 427 RP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred CC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceecCCCc-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 42 1233332 222344444 457789999997775 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 649 RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
+++..|.+.++++. +|+|+++++|+++ ..+.+|+|++|+ +|++++.|++++
T Consensus 499 ~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~-~G~i~e~G~h~e 549 (567)
T COG1132 499 ETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLD-NGRIVERGTHEE 549 (567)
T ss_pred HhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999999999876 5799999999986 466699999998 589999999753
No 63
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-40 Score=356.08 Aligned_cols=217 Identities=27% Similarity=0.377 Sum_probs=182.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888888652 2469999999999999999999999999999999999987 5799999999876
Q ss_pred Ccc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 543 VQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 543 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
... ..++.++|++|++.+++.+||+||+.+....+.. .....++.++.++++++.+++.+..++.++ .|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHH
Confidence 432 2245689999999888899999999886533211 001233334567889999999877777763 799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ +|++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEec
Confidence 99999999999999999999999999999999999999999875 899999999986 5778899999998 58999998
Q ss_pred CC
Q 043954 700 ML 701 (1045)
Q Consensus 700 ~~ 701 (1045)
++
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 75
No 64
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.4e-40 Score=355.92 Aligned_cols=215 Identities=27% Similarity=0.373 Sum_probs=180.9
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4677777542 3469999999999999999999999999999999999987 579999999987643
Q ss_pred c---c-ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 043954 545 K---T-FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPE-------IDSETKARFVEEVIETIELDDIKDSLVGIPGQ 613 (1045)
Q Consensus 545 ~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 613 (1045)
. . .++.++|++|++.+++.+||+||+.+......... ...++.++.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 2 1 23458999999999999999999988754321110 012334556889999999988777776
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|+ +|
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLD-QG 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEe-CC
Confidence 479999999999999999999999999999999999999999999999878999999999986 5778899999998 58
Q ss_pred EEEEecCC
Q 043954 694 RIIYSGML 701 (1045)
Q Consensus 694 ~~~~~G~~ 701 (1045)
++++.|++
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 99998875
No 65
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.6e-40 Score=374.72 Aligned_cols=203 Identities=22% Similarity=0.314 Sum_probs=180.4
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cc----cccceEeecCCcc
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---TF----ARISGYCEQTDIH 560 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~~----~~~~~~v~q~~~~ 560 (1045)
.+.+|+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++... .. ++.++||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4669999999999999999999999999999999999987 6799999999986532 22 5679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 043954 561 SPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMD 640 (1045)
Q Consensus 561 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLD 640 (1045)
++++||+||+.+..... ..++++..+++.++++.+||++..++.++ .|||||||||+|||||+.+|++||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 23455666788999999999888888764 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 641 EPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 641 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|||+|||+.++..+.+.++++.++ |+|+|++||+.+ ++.+.||++++|+ +|+++..|+++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~ 215 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPD 215 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHH
Confidence 999999999999999999999765 899999999986 5789999999998 58999999864
No 66
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-40 Score=373.08 Aligned_cols=218 Identities=25% Similarity=0.335 Sum_probs=186.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++... .+++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5688998876310 113569999999999999999999999999999999999987 57999999999864
Q ss_pred cc------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 QK------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ..++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13467899999999999999999999875433 1234445567889999999988888776 3799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
||||||++|||||+++|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ +|+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 5778899999998 59999
Q ss_pred EecCCC
Q 043954 697 YSGMLG 702 (1045)
Q Consensus 697 ~~G~~~ 702 (1045)
+.|+++
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999764
No 67
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-41 Score=377.23 Aligned_cols=220 Identities=23% Similarity=0.373 Sum_probs=182.7
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
+-.++|+|+++++. +++++|+++||+|++||.+||+|+|||||||++|+|.+..+ .+|+|++||+
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 44589999999874 24569999999999999999999999999999999999876 5899999999
Q ss_pred eCCc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 541 PKVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 541 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
++.. +..|+.+|||||+..++ +-||.+|+.++..-..++++-+..++...++.+. .+++.++|.+|+.|. .||
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~--~l~~GY~T~VGerG~-~LS 489 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNPSASDEEVVEACKRAGLHDVIS--RLPDGYQTLVGERGL-MLS 489 (591)
T ss_pred eHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHH--hccccchhhHhhccc-ccc
Confidence 8753 56788999999977665 5599999999753221111111222223344443 467889999999986 699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||||+||||+++||+|+++|||||+||.+++.++++.+++. ..|+|+|++.|+.+ +.+.||+|++|+ +|++..
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~-nG~v~e 565 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLD-NGTVKE 565 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEE-CCeeEE
Confidence 99999999999999999999999999999999999999999994 45999999999975 789999999998 589999
Q ss_pred ecCCCc
Q 043954 698 SGMLGR 703 (1045)
Q Consensus 698 ~G~~~~ 703 (1045)
.|+.++
T Consensus 566 ~gth~e 571 (591)
T KOG0057|consen 566 YGTHSE 571 (591)
T ss_pred eccHHH
Confidence 998753
No 68
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.1e-40 Score=415.07 Aligned_cols=243 Identities=24% Similarity=0.291 Sum_probs=194.8
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.... ... . +.....++++||+|+|+. +++++|+|+
T Consensus 417 ~~~~~~~~~~ri~~~l~~~~e~~~~----~~~----~-----~~~~~~I~~~nvsf~Y~~-----------~~~~vL~~i 472 (686)
T TIGR03797 417 SILAVIPLWERAKPILEALPEVDEA----KTD----P-----GKLSGAIEVDRVTFRYRP-----------DGPLILDDV 472 (686)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccC----cCC----C-----CCCCceEEEEEEEEEcCC-----------CCccceeee
Confidence 4566777889998887654332110 000 0 001235899999998742 235699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++|+|||.+||+||||||||||+|+|+|.++ |.+|+|.+||+++.. ...|+.++||+|++.+++ .|++|||.+
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~ 549 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAG 549 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhc
Confidence 99999999999999999999999999999998 679999999998753 456788999999888775 599999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.. .++++ +.++++..+ +++..||.+|+.| .+||||||||++|||||+++|++|+||||||+
T Consensus 550 ~~~------~~~e~----i~~al~~a~l~~~i~~lp~G~dt~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~ 618 (686)
T TIGR03797 550 GAP------LTLDE----AWEAARMAGLAEDIRAMPMGMHTVISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATSA 618 (686)
T ss_pred CCC------CCHHH----HHHHHHHcCcHHHHHhccccccccccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 531 23332 444455444 4567899999877 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++++.+.|+++ ++|+|++||+++ ..+.+|+|++|+ +|++++.|+.+
T Consensus 619 LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~-~G~iv~~G~~~ 669 (686)
T TIGR03797 619 LDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD-AGRVVQQGTYD 669 (686)
T ss_pred CCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999886 589999999985 678899999998 59999999864
No 69
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.2e-40 Score=354.00 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=181.6
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5677777552 3469999999999999999999999999999999999987 579999999987542
Q ss_pred c---c-ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 545 K---T-FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 545 ~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
. . .++.++|++|++.+++.+||+||+.+....+. ...++..++++++++.+++.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 1 1 23458999999999999999999988643321 223344556789999999988777776 4799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+.+|++++|+ +|+++..|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999986 6888999999998 589999887
Q ss_pred CC
Q 043954 701 LG 702 (1045)
Q Consensus 701 ~~ 702 (1045)
.+
T Consensus 217 ~~ 218 (232)
T cd03218 217 PE 218 (232)
T ss_pred HH
Confidence 53
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.3e-40 Score=353.80 Aligned_cols=214 Identities=25% Similarity=0.321 Sum_probs=178.1
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCC-----CCCeEEEEEEECC
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK-----TGGIIQGEIRVGG 539 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~-----~~~~~~G~I~~~g 539 (1045)
+++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 5677777542 346999999999999999999999999999999999987 5 5789999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 614 (1045)
+++.. ...++.++|++|++.++ .+||+||+.+....+. ....++.+++++++++.+|+.+..++... ..
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87542 22356789999998877 7999999988654321 11222234567889999999876666530 14
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|+|++||++. ++.+.||++++|+ +|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~-~G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLL-NGR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEe-CCE
Confidence 79999999999999999999999999999999999999999999999877 99999999986 5678899999998 589
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
+++.|+++
T Consensus 218 i~~~g~~~ 225 (227)
T cd03260 218 LVEFGPTE 225 (227)
T ss_pred EEEecCcc
Confidence 99998764
No 71
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.8e-40 Score=351.28 Aligned_cols=215 Identities=26% Similarity=0.451 Sum_probs=181.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++.. .+..++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 4678888865311 011269999999999999999999999999999999999987 57999999998864
Q ss_pred c--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 544 Q--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 544 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
. ...++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+++.+..++.++ .||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHH
Confidence 3 234567899999998889899999998765432 12344445678899999999887777763 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+.+|++++|+ +|++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLH-RGRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEeecC
Confidence 9999999999999999999999999999999999999999877999999999986 5778899999998 58887654
No 72
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=342.50 Aligned_cols=208 Identities=25% Similarity=0.372 Sum_probs=182.7
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccccceEeecCCccCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKT----FARISGYCEQTDIHSP 562 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~----~~~~~~~v~q~~~~~~ 562 (1045)
+...+++|||+++++||+++|+||||||||||+|+|+|.++ |++|+|.++|+++.... .+.-++.-+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 45779999999999999999999999999999999999998 67999999999876432 2344677899999999
Q ss_pred CCCHHHHHHHHhhhc--------CCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 043954 563 QITVEESVKFSAWLR--------LPPE-IDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSN 633 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~--------~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~ 633 (1045)
+|||.||+..+...+ .+.. ...++..+++.++++.+||.+.+|++.| +||+|||||+.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 999999999875533 1111 1345556778999999999999999986 6999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 634 PSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 634 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
|++|+||||.+||.+....++.+.|+++.++ |.|++++-|+.+ -++.+||||+||+ .|+++.+|++++
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~-~G~~IAeG~P~e 236 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLN-YGEVIAEGTPEE 236 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEecc-CCcCcccCCHHH
Confidence 9999999999999999999999999999884 699999999987 5899999999998 599999999864
No 73
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.6e-40 Score=351.38 Aligned_cols=208 Identities=29% Similarity=0.438 Sum_probs=173.8
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 577888765310 001569999999999999999999999999999999999987 579999999987643
Q ss_pred cc-------ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 545 KT-------FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 545 ~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. .++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcC
Confidence 11 23568999999999999999999998754331 223334556889999999988777776 3799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++ +.||++++|++ |+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999999999999999999999999999987 5899999999986 34 48999999984 65
No 74
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-40 Score=336.43 Aligned_cols=214 Identities=27% Similarity=0.393 Sum_probs=179.8
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|++..| ++.++|+|||+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 5678887644 45789999999999999999999999999999999999987 46899999999976
Q ss_pred cc----cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 043954 544 QK----TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIE-LDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 544 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSg 618 (1045)
.. ..++-++||||....|+.+||+|||..++..+.. ++..+..++++.+.+- |.+..+++.| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 42 2345689999999999999999999987654422 1111222666777663 5666777765 6999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
||||-++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++-++.. ...+.+||.++|+ .|++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999976 668888888765 5788999999998 599999
Q ss_pred ecCCCc
Q 043954 698 SGMLGR 703 (1045)
Q Consensus 698 ~G~~~~ 703 (1045)
+|+.++
T Consensus 218 ~G~~~e 223 (237)
T COG0410 218 SGTAAE 223 (237)
T ss_pred ecCHHH
Confidence 998754
No 75
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.3e-40 Score=376.55 Aligned_cols=218 Identities=26% Similarity=0.360 Sum_probs=186.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 367889988652 3579999999999999999999999999999999999987 5799999999886
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP--PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ...++.++|++|+..+++.+||+||+.++...... .... ++.+++++++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~-~~~~~~v~~~le~vgl~~~~~~~~-----~~LS 141 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT-ETDRAAVERAMERTGVAQFADRPV-----TSLS 141 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCC-HHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 43 23456799999999988999999999886421110 0112 233466899999999998888877 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
||||||++|||||+++|++|+|||||+|||+.++.++++.|++++++|+|+|+++|+++ ++.+.||++++|+ +|++++
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~ 219 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRA 219 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999878999999999986 5778999999998 599999
Q ss_pred ecCCCc
Q 043954 698 SGMLGR 703 (1045)
Q Consensus 698 ~G~~~~ 703 (1045)
.|++++
T Consensus 220 ~G~~~e 225 (402)
T PRK09536 220 AGPPAD 225 (402)
T ss_pred ecCHHH
Confidence 998753
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=6.6e-40 Score=348.15 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=176.4
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 5677877652 3469999999999999999999999999999999999887 579999999987543
Q ss_pred -ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 545 -KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 545 -~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
...++.++|++|++.+++.+||+||+.+....+. .. +++++++++.+++.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---IR----KKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHH
Confidence 2334568999999988999999999988654321 11 2457888999999887777763 799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+.+|++++|+ +|++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999878999999999986 5667899999998 58988765
No 77
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=8.1e-40 Score=350.67 Aligned_cols=213 Identities=26% Similarity=0.423 Sum_probs=180.6
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+.. +++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 57788776521 12569999999999999999999999999999999999987 579999999988643
Q ss_pred --ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 545 --KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 545 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
...++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.++|.+..++.++ .|||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHH
Confidence 2345668999999988889999999988654331 2233344568899999999887777763 79999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|++|||||+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|+|++||++. .+.+.||++++|+ +|++++.|++
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 216 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMS-DGKLRCIGSP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999999999999999999999999999876 699999999986 5667899999998 5899998875
No 78
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-39 Score=352.47 Aligned_cols=217 Identities=26% Similarity=0.343 Sum_probs=182.6
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+... .+.+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4678888765310 001269999999999999999999999999999999999987 57899999999864
Q ss_pred cc------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 QK------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 124668999999999999999999988654331 233444556889999999988777776 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|+ +|+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999875 899999999986 5678899999998 59999
Q ss_pred EecCC
Q 043954 697 YSGML 701 (1045)
Q Consensus 697 ~~G~~ 701 (1045)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 98874
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-40 Score=356.11 Aligned_cols=217 Identities=26% Similarity=0.333 Sum_probs=179.1
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 4677777542 11469999999999999999999999999999999999887 578999999987642
Q ss_pred c------cccccceEeecCCccCCCCCHHHHHHHHhhhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 043954 545 K------TFARISGYCEQTDIHSPQITVEESVKFSAWLRL-----PPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQ 613 (1045)
Q Consensus 545 ~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 613 (1045)
. ..++.++|++|++.+++.+||+||+.+...... ......+...++++++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA----- 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----
Confidence 1 234568999999988999999999987532110 001111233456788999999987777765
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ +
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~ 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLK-D 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999764 899999999986 5777999999998 5
Q ss_pred cEEEEecCCC
Q 043954 693 GRIIYSGMLG 702 (1045)
Q Consensus 693 G~~~~~G~~~ 702 (1045)
|++++.|+.+
T Consensus 221 G~i~~~~~~~ 230 (241)
T cd03256 221 GRIVFDGPPA 230 (241)
T ss_pred CEEEeecCHH
Confidence 8999998764
No 80
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.4e-40 Score=347.37 Aligned_cols=192 Identities=29% Similarity=0.398 Sum_probs=165.1
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCc-cCCCCCHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDI-HSPQITVE 567 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~-~~~~lTv~ 567 (1045)
+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+......++.++|++|++. .++.+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 569999999999999999999999999999999999887 579999999988644344567899999864 34567999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
||+.+..... .. .+++++++++.+++.+..++.++ +||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL-----DA--GNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc-----Cc--cHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754322 11 12457889999999888887763 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 648 ARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 648 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
+.+++.+.+.|++++++|+|+|++||+++ ++.+.||++++|+ +|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLA-NGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEC
Confidence 99999999999999878999999999986 5667899999998 47764
No 81
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-40 Score=361.54 Aligned_cols=204 Identities=22% Similarity=0.303 Sum_probs=175.6
Q ss_pred cccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---c----ccccceEeecCC
Q 043954 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---T----FARISGYCEQTD 558 (1045)
Q Consensus 486 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~----~~~~~~~v~q~~ 558 (1045)
++++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+.... . .++.++|++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 345679999999999999999999999999999999999987 5789999999876421 1 134689999999
Q ss_pred ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEE
Q 043954 559 IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIF 638 (1045)
Q Consensus 559 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~ill 638 (1045)
.+++.+||+||+.+..... .....+..++++++++.++|.+..++.++ +||||||||++|||||+.+|++|+
T Consensus 112 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998999999998865432 12233445568899999999888888774 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 639 MDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 639 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|||||+|||+.+++.+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ +|++++.|++
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 245 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTP 245 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999999765 899999999976 5778899999998 5899998875
No 82
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.3e-39 Score=364.34 Aligned_cols=213 Identities=24% Similarity=0.402 Sum_probs=185.6
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++. ++.+|+|+||++++||+++|+||||||||||+|+|+|..+ |++|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888888652 3569999999999999999999999999999999999987 57999999998864
Q ss_pred c--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 544 Q--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 544 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
. ...++.+||++|++.+++.+||.||+.+.+.++. ...++.+++++++++.+||.+..++.++ .||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHH
Confidence 3 2345678999999999999999999998765532 2334445568899999999988888874 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
||++|||||+++|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.||++++|+ +|++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999865 799999999986 6888999999998 5999999986
Q ss_pred C
Q 043954 702 G 702 (1045)
Q Consensus 702 ~ 702 (1045)
+
T Consensus 217 ~ 217 (301)
T TIGR03522 217 D 217 (301)
T ss_pred H
Confidence 3
No 83
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.1e-39 Score=347.41 Aligned_cols=221 Identities=37% Similarity=0.656 Sum_probs=182.2
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIQGEIRVGGYPK 542 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~-~~~~G~I~~~g~~~ 542 (1045)
+.|+|+++.++.. +..+++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+.+|+|.++|++.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4588888876321 0136799999999999999999999999999999999998751 24689999999887
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEE-VIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
.....++.++|++|++.+++.+||+||+.+......+.....+...+++++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544456778999999999999999999998754432222122223334555 888888887777665 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|+ +|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEEEecC
Confidence 999999999999999999999999999999999999999987789999999998546889999999998 58998765
No 84
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.3e-39 Score=351.81 Aligned_cols=214 Identities=26% Similarity=0.383 Sum_probs=182.1
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46788887652 3469999999999999999999999999999999999887 57999999998864
Q ss_pred c-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 544 Q-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 544 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
. ...++.++|++|++.+++.+||+||+.+..... .....++.++.++++++.+|+++..++.+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 123456899999998888999999998754211 11233444566889999999987777776 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|+ +|++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 5667899999998 5899999
Q ss_pred cCC
Q 043954 699 GML 701 (1045)
Q Consensus 699 G~~ 701 (1045)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
No 85
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-39 Score=349.05 Aligned_cols=217 Identities=24% Similarity=0.366 Sum_probs=180.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++.. ...+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47889999876311 011469999999999999999999999999999999999987 5799999999886
Q ss_pred Cccc------c-cccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 543 VQKT------F-ARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
.... . ++.++|++|+..+++.+|++||+.+....+ ....++.+++++++++.+|+.+..++.+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4311 1 246899999988889999999999865432 1233344567889999999988777765 37
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ + .+.+|++++|+ +|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~-~~~~~~~~~l~-~G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-L-AKRMSRQLEMR-DGR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-HHhhCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999999999976 4899999999985 3 44568999997 589
Q ss_pred EEEecCC
Q 043954 695 IIYSGML 701 (1045)
Q Consensus 695 ~~~~G~~ 701 (1045)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9988874
No 86
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.6e-39 Score=346.77 Aligned_cols=207 Identities=28% Similarity=0.389 Sum_probs=175.6
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788887652 12469999999999999999999999999999999999987 57999999998764
Q ss_pred cc------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 QK------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ..++.++|++|++.+++.+|++||+.+....+ ....+..+++++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 23457899999998888999999999875432 1233344566889999999987777776 3799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|++ |+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~ 214 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD-GR 214 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC-CC
Confidence 99999999999999999999999999999999999999999999877999999999986 57778999999974 53
No 87
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-39 Score=360.07 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=182.8
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++... ...+++|+|||++|++||++||+||||||||||+++|+|..+ |.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67889988763210 012469999999999999999999999999999999999987 57999999999864
Q ss_pred c-----ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCC
Q 043954 544 Q-----KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD--DIKDSLVGIPGQSG 615 (1045)
Q Consensus 544 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~ 615 (1045)
. ...++.+||++|++. .+...||+||+.+..... ..+.++.+++++++++.+||. +..|+.+ +.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 3 134567899999863 344679999999865332 234555566789999999997 5567665 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ +|+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~-~G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMN-KGK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999875 899999999975 5678899999998 599
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99999763
No 88
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=319.57 Aligned_cols=201 Identities=24% Similarity=0.378 Sum_probs=180.7
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
+.+|+|+|++|.+||.++++||||||||||||+++|..+ |..|+|.+||.+++... ...|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 569999999999999999999999999999999999988 67999999999876432 23589999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
|+.|+.+++ .++++++++++.+.+..+||++..++.+ -.||||||||+.|||||..+|+.|+||||+++||.
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 5678899999999999999998888877 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEec-CcEEEEecCCC
Q 043954 649 RAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKA-GGRIIYSGMLG 702 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~~ 702 (1045)
-+++++.++|-++.+ .|+.++++||+.. |..-+++++++|+. .||++..=+++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999988765 5999999999986 56678899999973 37888876663
No 89
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-41 Score=367.87 Aligned_cols=253 Identities=26% Similarity=0.372 Sum_probs=205.2
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
+|+.....|+.+++.+++++..+.+. .++ +......++|+|++|.|+. ++++|+|||
T Consensus 502 iQ~nfiDmEnmfdllkee~eVvd~P~---a~p--------l~~~~G~i~fsnvtF~Y~p------------~k~vl~dis 558 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPEVVDLPG---APP--------LKVTQGKIEFSNVTFAYDP------------GKPVLSDIS 558 (790)
T ss_pred HHHhhhhHHHHHHHhhcCchhhcCCC---CCC--------ccccCCeEEEEEeEEecCC------------CCceeecce
Confidence 46667788999998877766543321 111 2334567899999998753 478999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
|++.||+.+||+||||+||||++++|-...+ ..+|.|.+||+++.. ...|+.+|.||||..++. .|+..||+|+
T Consensus 559 F~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIrya 635 (790)
T KOG0056|consen 559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYA 635 (790)
T ss_pred EEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeec
Confidence 9999999999999999999999999999876 568999999999753 467888999999877765 5999999987
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAI 653 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~ 653 (1045)
..-..++++..+.+.+.+++ +.++.++.++++||+.|. .|||||||||+|||+++++|.+++|||.||+||..++++
T Consensus 636 k~~AsneevyaAAkAA~IHd--rIl~fPegY~t~VGERGL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~ 712 (790)
T KOG0056|consen 636 KPSASNEEVYAAAKAAQIHD--RILQFPEGYNTRVGERGL-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERA 712 (790)
T ss_pred CCCCChHHHHHHHHHhhHHH--HHhcCchhhhhhhhhccc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHH
Confidence 43222222222223333333 235889999999999997 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 654 VMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 654 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|...|.+++. +||.|++.|+++ ..-.+|.|++++ +|++++.|..+
T Consensus 713 IQaaL~rlca-~RTtIVvAHRLS--TivnAD~ILvi~-~G~IvErG~He 757 (790)
T KOG0056|consen 713 IQAALARLCA-NRTTIVVAHRLS--TIVNADLILVIS-NGRIVERGRHE 757 (790)
T ss_pred HHHHHHHHhc-CCceEEEeeeeh--heecccEEEEEe-CCeEeecCcHH
Confidence 9999999976 899999999987 466899999998 59999999864
No 90
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.5e-39 Score=347.02 Aligned_cols=206 Identities=26% Similarity=0.339 Sum_probs=174.8
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ +++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4677777652 12469999999999999999999999999999999999887 579999999987642
Q ss_pred c------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 545 K------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 545 ~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
. ..++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+++++..++.+ .+|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 234678999999999999999999988754321 233444556889999999988777776 37999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+.||++++|++ |+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999877999999999985 56678999999984 65
No 91
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.8e-40 Score=355.53 Aligned_cols=218 Identities=25% Similarity=0.315 Sum_probs=179.8
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. .++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 46778877542 13569999999999999999999999999999999999987 57999999998754
Q ss_pred c------ccccccceEeecCCccCCCCCHHHHHHHHhhhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 043954 544 Q------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRL-----PPEIDSETKARFVEEVIETIELDDIKDSLVGIPG 612 (1045)
Q Consensus 544 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 612 (1045)
. ...++.++|++|++.+++.+||+||+.+...... ......++.+++++++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 2 1235678999999988999999999987432100 000112233456888999999987777765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||++++|+
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~- 220 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLK- 220 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-
Confidence 479999999999999999999999999999999999999999999999765 899999999986 5678899999998
Q ss_pred CcEEEEecCCC
Q 043954 692 GGRIIYSGMLG 702 (1045)
Q Consensus 692 gG~~~~~G~~~ 702 (1045)
+|++++.|+++
T Consensus 221 ~G~i~~~~~~~ 231 (243)
T TIGR02315 221 AGEIVFDGAPS 231 (243)
T ss_pred CCEEEecCCHH
Confidence 58999988764
No 92
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-39 Score=352.72 Aligned_cols=212 Identities=24% Similarity=0.356 Sum_probs=180.5
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56788887652 2469999999999999999999999999999999999987 57999999998864
Q ss_pred cccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 544 QKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 544 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
. ..+.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2235799999988888899999998764332 1233444566889999999987777765 3799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEec-CcEEEEecCC
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKA-GGRIIYSGML 701 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~ 701 (1045)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||++. ++.+.||++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 57788999999974 5899988765
No 93
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.3e-39 Score=352.82 Aligned_cols=214 Identities=27% Similarity=0.357 Sum_probs=181.8
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67888888652 2469999999999999999999999999999999999887 57899999998753
Q ss_pred c-----------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 043954 544 Q-----------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPG 612 (1045)
Q Consensus 544 ~-----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 612 (1045)
. ...++.++|++|++.+++.+|++||+.+...... ....++..++++++++.+|+.+..++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1234568999999988889999999987532111 1233444566888999999987777765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|+ +
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~ 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD-Q 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999877999999999986 5678899999998 5
Q ss_pred cEEEEecCC
Q 043954 693 GRIIYSGML 701 (1045)
Q Consensus 693 G~~~~~G~~ 701 (1045)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899998875
No 94
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=352.32 Aligned_cols=212 Identities=26% Similarity=0.382 Sum_probs=180.3
Q ss_pred EEeceEEEEecCcccccccccccc-ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKK-LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
+++|+++++. + +.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++..
T Consensus 2 ~~~~l~~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (242)
T cd03295 2 EFENVTKRYG-------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIR 66 (242)
T ss_pred EEEEEEEEeC-------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcC
Confidence 4677777542 2 469999999999999999999999999999999999887 57899999998754
Q ss_pred c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 043954 544 Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD--IKDSLVGIPGQSGLST 618 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSg 618 (1045)
. ...++.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+++.+ ..++.+ +.|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCH
Confidence 2 233456899999999999999999998865432 1233444566889999999985 566665 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|+ +|++++
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK-NGEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999986 5778899999998 589999
Q ss_pred ecCC
Q 043954 698 SGML 701 (1045)
Q Consensus 698 ~G~~ 701 (1045)
.|+.
T Consensus 217 ~~~~ 220 (242)
T cd03295 217 VGTP 220 (242)
T ss_pred ecCH
Confidence 8875
No 95
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.3e-40 Score=410.16 Aligned_cols=248 Identities=26% Similarity=0.388 Sum_probs=197.4
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
.++++..+.+|+.++.+.+++.+... ... . .+.....++++|++|+|+. +++++|+|+
T Consensus 427 ~~~~~~~~~~ri~~il~~~~e~~~~~---~~~---~-----~~~~~~~I~~~~vsf~Y~~-----------~~~~vL~~i 484 (694)
T TIGR03375 427 RYQQAKTALQSLDELMQLPVERPEGT---RFL---H-----RPRLQGEIEFRNVSFAYPG-----------QETPALDNV 484 (694)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC---CCC---C-----CCCccceEEEEEEEEEeCC-----------CCccceeee
Confidence 45667788899988877654322110 000 0 0111235899999998742 235699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++|+|||.+||+||||||||||+|+|+|.++ |.+|+|.+||.++.. ..+|+.++||+|++.++. .|++|||.+
T Consensus 485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~ 561 (694)
T TIGR03375 485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIAL 561 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhC
Confidence 99999999999999999999999999999998 679999999998653 456788999999888776 599999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETI-------ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. ++.++++ +.++++.. .+++..||.+|+.|. .||||||||++|||||+++|++++||||||+
T Consensus 562 ~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~-~LSgGQrQRlalARall~~p~iliLDE~Ts~ 631 (694)
T TIGR03375 562 GA-----PYADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSA 631 (694)
T ss_pred CC-----CCCCHHH----HHHHHHHcChHHHHHhCcccccceecCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 52 1233332 33333333 356678999998874 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++++.+.|+++.+ ++|+|++||+++ ..+.||+|++|+ +|++++.|+++
T Consensus 632 LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~-~G~i~e~G~~~ 684 (694)
T TIGR03375 632 MDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMD-NGRIVADGPKD 684 (694)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe-CCEEEeeCCHH
Confidence 999999999999999854 899999999985 578999999998 59999999864
No 96
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.9e-39 Score=348.36 Aligned_cols=210 Identities=26% Similarity=0.394 Sum_probs=176.5
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++++. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCC
Confidence 5677777542 3469999999999999999999999999999999999987 579999999987643
Q ss_pred c---c-ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCHH
Q 043954 545 K---T-FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETI-ELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 545 ~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSgG 619 (1045)
. . .++.++|++|++.+++.+|++||+.+...... ..+.++.++++++.+ ++.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHH
Confidence 2 1 24568999999999999999999988654321 122334566778877 4776677765 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|+|++||++. ++.+.||++++|+ +|+++..|
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 214 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLEG 214 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEeC
Confidence 999999999999999999999999999999999999999999877899999999985 5778899999998 58999888
Q ss_pred CC
Q 043954 700 ML 701 (1045)
Q Consensus 700 ~~ 701 (1045)
+.
T Consensus 215 ~~ 216 (222)
T cd03224 215 TA 216 (222)
T ss_pred CH
Confidence 64
No 97
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.5e-39 Score=362.74 Aligned_cols=231 Identities=21% Similarity=0.250 Sum_probs=187.2
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++||++.+.............+...+++|||++|++||+++|+|+||||||||+++|+|+.+ +.+|+|.++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 357899999887532110000001123569999999999999999999999999999999999987 579999999998
Q ss_pred CCcc------cccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 043954 542 KVQK------TFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPG 612 (1045)
Q Consensus 542 ~~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 612 (1045)
+... ..++.++||+|++ .++|.+||.||+.+...... ...++++.+++++++++.++|. +..++..
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p---- 159 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYP---- 159 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCc----
Confidence 6431 2346799999987 57889999999988654321 1234555667788999999994 4556665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
+.|||||||||+|||||+.+|++|++||||+|||..++.++++.|+++.++ |.|+|++||++. .+.+.||++++|.
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~- 236 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY- 236 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 479999999999999999999999999999999999999999999999875 899999999986 5667899999998
Q ss_pred CcEEEEecCCC
Q 043954 692 GGRIIYSGMLG 702 (1045)
Q Consensus 692 gG~~~~~G~~~ 702 (1045)
+|++++.|+.+
T Consensus 237 ~G~ive~g~~~ 247 (331)
T PRK15079 237 LGHAVELGTYD 247 (331)
T ss_pred CCEEEEEcCHH
Confidence 58999999864
No 98
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=361.72 Aligned_cols=219 Identities=23% Similarity=0.323 Sum_probs=182.4
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++... .....+|+|||++|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 67899998774210 012359999999999999999999999999999999999987 56899999987531
Q ss_pred ---------------------------cccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 043954 544 ---------------------------QKTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVI 595 (1045)
Q Consensus 544 ---------------------------~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l 595 (1045)
....++.+||++|++ ..+...||+||+.|+.... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 012356789999985 3445679999999875432 234555567789999
Q ss_pred HHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 043954 596 ETIELD-DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQ 674 (1045)
Q Consensus 596 ~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 674 (1045)
+.+||. +..++.+ ..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5677766 4799999999999999999999999999999999999999999999998779999999999
Q ss_pred CcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 675 PSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 675 ~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
++ ++.+.||++++|+ +|++++.|+++
T Consensus 225 ~~-~~~~~adrv~vl~-~G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFK-DGKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 75 5778999999997 58999999864
No 99
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3e-39 Score=356.26 Aligned_cols=216 Identities=21% Similarity=0.300 Sum_probs=183.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478999998652 3569999999999999999999999999999999999987 5799999999876
Q ss_pred Ccc------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 043954 543 VQK------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 543 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 616 (1045)
... ..++.++|++|+..+++.+||.||+.+...... ..+.+..++.++++++.+++.+..++.++ .|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----EL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hC
Confidence 421 124568999999888899999999987643211 12333344567889999999888887763 79
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
|||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|+|++||++. ++.+.||++++|+ +|++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 5778899999998 5899
Q ss_pred EEecCCC
Q 043954 696 IYSGMLG 702 (1045)
Q Consensus 696 ~~~G~~~ 702 (1045)
++.|+.+
T Consensus 223 ~~~g~~~ 229 (269)
T PRK11831 223 VAHGSAQ 229 (269)
T ss_pred EEeCCHH
Confidence 9998753
No 100
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-39 Score=356.83 Aligned_cols=215 Identities=27% Similarity=0.355 Sum_probs=182.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|++.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 367899988653 12459999999999999999999999999999999999987 5799999999986
Q ss_pred Cc---ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQ---KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
.. ...++.++|++|++. .++..||.||+.+..... ..+.++.+++++++++.++|.+..++.+. .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCH
Confidence 43 223456899999863 455689999998864321 23344445668899999999888888763 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
|||||++|||||+.+|++|+|||||+|||+.++.++.+.|++++++|+|+|++||+++ ++.+.||++++|+ +|++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999976 4668899999998 5899999
Q ss_pred cCC
Q 043954 699 GML 701 (1045)
Q Consensus 699 G~~ 701 (1045)
|++
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 986
No 101
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7e-40 Score=401.55 Aligned_cols=243 Identities=24% Similarity=0.374 Sum_probs=195.6
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.++++... . .. +.....++++|++|.++. ++++|+|+
T Consensus 307 ~~~~~~~s~~ri~~~l~~~~~~~~~----~----~~------~~~~~~i~~~~v~f~y~~------------~~~il~~i 360 (592)
T PRK10790 307 MLQQAVVAGERVFELMDGPRQQYGN----D----DR------PLQSGRIDIDNVSFAYRD------------DNLVLQNI 360 (592)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCC----C----cc------CCCCCeEEEEEEEEEeCC------------CCceeece
Confidence 4556677888988877543221100 0 00 011235889999998741 24599999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||.+||+|+||||||||+|+|+|+++ |.+|+|.+||.++.+ ..+++.++||+|++.+++. |++|||.+
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~ 437 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTL 437 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHh
Confidence 99999999999999999999999999999988 579999999998653 4567889999999888875 99999988
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. ..+++ .++++++.+| +++..||.+|+.|. +||||||||++|||||+++|+||+||||||+
T Consensus 438 ~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~-~LSGGqrQRialARaLl~~~~illlDEpts~ 506 (592)
T PRK10790 438 GR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQGN-NLSVGQKQLLALARVLVQTPQILILDEATAN 506 (592)
T ss_pred CC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 53 12222 2455555555 45678999998774 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.||++++|+ +|+++..|+.+
T Consensus 507 LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~-~G~i~~~G~~~ 559 (592)
T PRK10790 507 IDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH-RGQAVEQGTHQ 559 (592)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE-CCEEEEEcCHH
Confidence 999999999999999854 799999999985 677899999998 59999999864
No 102
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-39 Score=322.92 Aligned_cols=226 Identities=25% Similarity=0.399 Sum_probs=187.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++.+|++|++. .+++|++||++++|||++||+||||||||||||.|+|... |.+|++.+||.+..
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56788888763 4679999999999999999999999999999999999887 56899999999865
Q ss_pred c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 544 Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
. ....+..+.+||+..+-+..||+|-+.++..-... .-..++..+.++++++..++.+...+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 3 23456678999999888888999999997532211 1122244456788999999988877665 4799999
Q ss_pred HHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 621 RKRLTIAVELVS------NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 621 rqRv~ia~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||.+||.|+. ++++|+||||||+||...+..++++.++++++|..|+++.||++. ...+|||+++|+ +||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 999999999975 445899999999999999999999999999999999999999984 678999999998 599
Q ss_pred EEEecCCCcc--hhHHHHHH
Q 043954 695 IIYSGMLGRH--SSKLIEYF 712 (1045)
Q Consensus 695 ~~~~G~~~~~--~~~~~~~f 712 (1045)
++..|++.+. .+.+...|
T Consensus 219 v~a~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 219 VIASGSPQDVLTDETLERVY 238 (259)
T ss_pred EeecCCHHHhcCHHHHHHHh
Confidence 9999998652 23344444
No 103
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.3e-40 Score=411.49 Aligned_cols=252 Identities=23% Similarity=0.322 Sum_probs=195.3
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++...... +........ .+.....++++|++|+++. .++++|+|+
T Consensus 435 ~~~~~~~~~~ri~~il~~~~e~~~~~~-~~~~~~~~~----~~~~~~~I~~~~vsf~y~~-----------~~~~vL~~i 498 (710)
T TIGR03796 435 TLQELEGDLNRLDDVLRNPVDPLLEEE-EAPAAGSEP----SPRLSGYVELRNITFGYSP-----------LEPPLIENF 498 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccccc-ccccccccc----CCCCCCeEEEEEEEEecCC-----------CCCCcccce
Confidence 456677788999888766543221100 000000000 0111236899999998742 235699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++|++||.+||+||||||||||+|+|+|.++ |.+|+|.+||.++.+ ...|+.++||+|++.++. .|++|||.+
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l 575 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTL 575 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhC
Confidence 99999999999999999999999999999988 679999999998643 456788999999887775 699999986
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. +..++++ +.++++..+ +++..||.+|+.|. +||||||||++|||||+++|++|+||||||+
T Consensus 576 ~~-----~~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e~G~-~LSGGQrQRiaLARall~~p~iliLDEptS~ 645 (710)
T TIGR03796 576 WD-----PTIPDAD----LVRACKDAAIHDVITSRPGGYDAELAEGGA-NLSGGQRQRLEIARALVRNPSILILDEATSA 645 (710)
T ss_pred CC-----CCCCHHH----HHHHHHHhCCHHHHHhCcCcccceeccCCC-CCCHHHHHHHHHHHHHhhCCCEEEEECcccc
Confidence 42 1223332 334444433 45678999998774 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++++.+.|++ .++|+|++||+++ ..+.+|++++|+ +|++++.|+.+
T Consensus 646 LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~-~G~i~~~G~~~ 696 (710)
T TIGR03796 646 LDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE-RGKVVQRGTHE 696 (710)
T ss_pred CCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe-CCEEEEecCHH
Confidence 999999999999986 4899999999985 577899999998 59999999864
No 104
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-39 Score=358.90 Aligned_cols=219 Identities=28% Similarity=0.378 Sum_probs=182.0
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 57899998774210 011359999999999999999999999999999999999987 57999999999863
Q ss_pred c-------ccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 043954 544 Q-------KTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQS 614 (1045)
Q Consensus 544 ~-------~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 614 (1045)
. ...++.++|++|++ ..+...||.||+.|+.... ..+.++.++++.++++.++|. +..++.+ +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----F 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----c
Confidence 1 12456789999985 2333469999999875432 234455566789999999996 4556665 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|+ +|+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-KGH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999999878999999999985 5678899999998 599
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
+++.|+++
T Consensus 222 i~~~g~~~ 229 (288)
T PRK13643 222 IISCGTPS 229 (288)
T ss_pred EEEECCHH
Confidence 99999864
No 105
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.1e-40 Score=401.76 Aligned_cols=247 Identities=24% Similarity=0.360 Sum_probs=194.3
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.+..+.+++.+.. +. . .+..+..++++|++|.++. +++++|+|+
T Consensus 307 ~~~~~~~~~~ri~~~~~~~~~~~~~---~~-~---------~~~~~~~i~~~~vsf~y~~-----------~~~~il~~i 362 (582)
T PRK11176 307 QFQRGMAACQTLFAILDLEQEKDEG---KR-V---------IERAKGDIEFRNVTFTYPG-----------KEVPALRNI 362 (582)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCC---Cc-C---------CCCCCCeEEEEEEEEecCC-----------CCCccccCc
Confidence 3455666778887766543221110 00 0 0111235899999997642 235799999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||.+||+||||||||||+|+|+|.++ |.+|+|.+||.+..+ ..+++.++|++|++.+++ .|++|||.+
T Consensus 363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~ 439 (582)
T PRK11176 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAY 439 (582)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhc
Confidence 99999999999999999999999999999988 579999999998653 356788999999888776 699999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. +...++++ ++++++.++ +++..||.+|+.| ++||||||||++|||||+++|+||+||||||+
T Consensus 440 ~~----~~~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEptsa 510 (582)
T PRK11176 440 AR----TEQYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSA 510 (582)
T ss_pred CC----CCCCCHHH----HHHHHHHhCcHHHHHhcccccCceeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 52 11233333 334444433 5677899999877 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|+ +|++++.|+.+
T Consensus 511 LD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~-~g~i~e~g~~~ 563 (582)
T PRK11176 511 LDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVE-DGEIVERGTHA 563 (582)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEE-CCEEEEeCCHH
Confidence 99999999999999974 4799999999985 678899999998 59999999864
No 106
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-39 Score=358.64 Aligned_cols=219 Identities=25% Similarity=0.339 Sum_probs=182.0
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++... ...+++|+|||++|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899998774210 012469999999999999999999999999999999999987 57999999999863
Q ss_pred c-------ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 043954 544 Q-------KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQS 614 (1045)
Q Consensus 544 ~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 614 (1045)
. ...++.+||++|++. .+...||+||+.++.... ..+.++.+++++++++.++|. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 1 134467899999852 333579999999875322 234444556789999999996 5567766 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.|||+++|+ +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999765 899999999986 5778999999998 59
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
++++.|+++
T Consensus 223 ~i~~~g~~~ 231 (290)
T PRK13634 223 TVFLQGTPR 231 (290)
T ss_pred EEEEECCHH
Confidence 999999753
No 107
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.9e-39 Score=344.95 Aligned_cols=209 Identities=24% Similarity=0.319 Sum_probs=176.9
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788887652 12469999999999999999999999999999999999987 57999999998764
Q ss_pred cc------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 QK------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ..++.++|++|++.+++.+|++||+.+....+ ..+.++.++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13467899999988888999999998865432 1233444456788999999987777765 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|.|+|++||+++ ++.+.||++++|+ +|+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLS-DGHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEc
Confidence 99999999999999999999999999999999999999999999877899999999986 5677899999998 47764
No 108
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.9e-39 Score=344.64 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=174.8
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4677877652 2469999999999999999999999999999999999987 579999999987632
Q ss_pred -----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 545 -----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 545 -----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
...++.++|++|++.+++.+|++||+.+...... ....++.+++++++++.+++.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2245678999999988989999999987642111 1233444566888999999988777776 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.+.||++++|++ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999999877899999999986 56788999999984 65
No 109
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.7e-40 Score=408.99 Aligned_cols=246 Identities=24% Similarity=0.345 Sum_probs=192.5
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.+..+.+++.+... . . .. ......++++|++|+++.. +++++|+|+
T Consensus 443 ~~~~~~~a~~ri~~~l~~~~~~~~~~---~-~---~~-----~~~~~~I~~~nVsf~Y~~~----------~~~~vL~~i 500 (711)
T TIGR00958 443 GMMQAVGASEKVFEYLDRKPNIPLTG---T-L---AP-----LNLEGLIEFQDVSFSYPNR----------PDVPVLKGL 500 (711)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCC---C-C---CC-----CCCCCeEEEEEEEEECCCC----------CCCccccCc
Confidence 45667778899988876644322110 0 0 00 0012358999999987521 135799999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++++|||.+||+||||||||||+|+|+|.++ |.+|+|.+||+++.+ ...++.++||+|++.++. .|++|||.+
T Consensus 501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~ 577 (711)
T TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAY 577 (711)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhc
Confidence 99999999999999999999999999999988 679999999998653 456778999999887765 699999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.. ..+++ .+.++++..+ +++..||.+|+.|. .||||||||++|||||+++|+||+||||||+
T Consensus 578 g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G~-~LSGGQkQRlalARALl~~p~ILILDEpTSa 647 (711)
T TIGR00958 578 GLT-----DTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEKGS-QLSGGQKQRIAIARALVRKPRVLILDEATSA 647 (711)
T ss_pred CCC-----CCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEEccccc
Confidence 531 22222 2444555544 45568999998774 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+++++.+.+ .. ..+++|+|++||+++ ..+.+|+|++|+ +|++++.|+++
T Consensus 648 LD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~-~G~ive~Gt~~ 698 (711)
T TIGR00958 648 LDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK-KGSVVEMGTHK 698 (711)
T ss_pred cCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE-CCEEEEeeCHH
Confidence 99999999998 22 235899999999975 578899999998 59999999864
No 110
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.3e-40 Score=331.68 Aligned_cols=213 Identities=25% Similarity=0.404 Sum_probs=194.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
+++++|+.++ +++.+++|+||+++||++.+++|||||||||.+++|.|+.+ |++|+|.++|.++.
T Consensus 3 L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 5677776543 56789999999999999999999999999999999999988 67999999999876
Q ss_pred cccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 544 QKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 544 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
.. .+.++||+|.+..+++.+||.|.|.|.+.++ .+++++.++.++.+++++++.+....+| ++||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 53 3457899999999999999999999999886 5677888888999999999999888888 4799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
+.+..+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+.. .+.++||++++|+ +|+.|.+|+..
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~-kG~~V~~G~v~ 215 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLK-KGQTVLYGTVE 215 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheec-CCceEEeccHH
Confidence 99999999999999999999999999999999999999999999999999986 7899999999998 58999999863
No 111
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.7e-40 Score=314.52 Aligned_cols=213 Identities=26% Similarity=0.380 Sum_probs=181.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++.++++.++... .+...||++|++.+++||.+||+|||||||||||-+++|+.. +++|+|.+.|+++
T Consensus 6 ii~~~~l~ktvg~~---------~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQG---------EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcCC---------CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcch
Confidence 35667777665432 245789999999999999999999999999999999999987 5799999999986
Q ss_pred Ccc------c-ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 543 VQK------T-FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~~------~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
... . +.+.+|+|+|...+.|++|..||+...+.++.. +..+.++.+.+.++.+||.+..+...+ .
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~-----q 146 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPA-----Q 146 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCcc-----c
Confidence 431 1 346799999999999999999999998877643 223334567889999999988777653 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.++ |.|.|++||||. +...|||.+-|. .|+
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~-~G~ 223 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLR-SGR 223 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeee-cce
Confidence 9999999999999999999999999999999999999999999998765 999999999985 788999999998 588
Q ss_pred EEE
Q 043954 695 IIY 697 (1045)
Q Consensus 695 ~~~ 697 (1045)
++.
T Consensus 224 l~~ 226 (228)
T COG4181 224 LVE 226 (228)
T ss_pred ecc
Confidence 864
No 112
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-39 Score=344.19 Aligned_cols=208 Identities=30% Similarity=0.481 Sum_probs=176.3
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++++|+|+|+++++| +++|+||||||||||+++|+|..+ |.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 5777877552 246999999999999 999999999999999999999887 579999999987543
Q ss_pred --ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 545 --KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 545 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
...++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2335678999999999999999999988654431 223333456888999999988777776 379999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|++|||||+.+|++++|||||+|||+.+++.+.+.|+++++ ++|+|++||++. ++.+.+|++++|+ +|++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999976 599999999986 4667899999998 58988764
No 113
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=7.6e-40 Score=408.77 Aligned_cols=247 Identities=22% Similarity=0.324 Sum_probs=194.8
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.+... .... .+.....++++|++|+++ +++++|+|+
T Consensus 437 ~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~--------~~~~~~~I~~~~vsf~y~------------~~~~iL~~i 493 (708)
T TIGR01193 437 KLQAARVANNRLNEVYLVDSEFINKK---KRTE--------LNNLNGDIVINDVSYSYG------------YGSNILSDI 493 (708)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccc---cccC--------CCCCCCcEEEEEEEEEcC------------CCCcceece
Confidence 45667778899988876544322110 0000 011123588999999763 124699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++|++||.+||+||||||||||+|+|+|+++ |.+|+|++||.++.+ ..+|+.++||+|++.+++ .|++|||.+
T Consensus 494 sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l 570 (708)
T TIGR01193 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLL 570 (708)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HHHHHHHhc
Confidence 99999999999999999999999999999988 679999999998643 456788999999888775 599999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETI-------ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.. +..++++ +.++++.. .+++..||.+|+.|. +||||||||++|||||+++|++|+||||||+
T Consensus 571 ~~~----~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e~G~-~LSgGQrQRialARall~~p~iliLDE~Ts~ 641 (708)
T TIGR01193 571 GAK----ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEEGS-SISGGQKQRIALARALLTDSKVLILDESTSN 641 (708)
T ss_pred cCC----CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecCCCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence 531 1223332 33333333 355678999998774 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++.+.+.|+++ +|+|+|+++|+++ ..+.+|++++|+ +|++++.|+.+
T Consensus 642 LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~-~G~i~~~G~~~ 693 (708)
T TIGR01193 642 LDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD-HGKIIEQGSHD 693 (708)
T ss_pred CCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999985 4899999999985 578899999998 59999999863
No 114
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=5.2e-39 Score=346.47 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=174.1
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+... ....++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4678888765310 001369999999999999999999999999999999999987 57999999998764
Q ss_pred c------ccccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 043954 544 Q------KTFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQS 614 (1045)
Q Consensus 544 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 614 (1045)
. ...++.++|++|++ .+.+.+||+||+.+....... ....+..++.++++++.+++. +..++.+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 13456789999987 466789999999876543211 111111122235788999985 4566665 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMY-AG 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEe-CC
Confidence 79999999999999999999999999999999999999999999999876 899999999986 5667899999998 58
Q ss_pred EEEEec
Q 043954 694 RIIYSG 699 (1045)
Q Consensus 694 ~~~~~G 699 (1045)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 987654
No 115
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4e-40 Score=365.29 Aligned_cols=250 Identities=29% Similarity=0.393 Sum_probs=205.1
Q ss_pred CCCCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccc
Q 043954 414 PPKMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLH 493 (1045)
Q Consensus 414 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~ 493 (1045)
|..+..+..+++|+.+.+...|... +.+.+|.....+.++++++. |+ ..++++|+
T Consensus 299 Wkq~~~Ar~s~~Rl~~lL~~~p~~~--------------~~m~LP~P~g~L~Ve~l~~~---PP--------g~~~pil~ 353 (580)
T COG4618 299 WKQFVAARQSYKRLNELLAELPAAA--------------ERMPLPAPQGALSVERLTAA---PP--------GQKKPILK 353 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccc--------------CCCCCCCCCceeeEeeeeec---CC--------CCCCccee
Confidence 3455677788999988776543221 12334445567889999883 22 24578999
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESV 570 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l 570 (1045)
|+||.+++||.+||+||||||||||.|+|.|..+ |.+|.|++||.++.+ +.+-+++||.||+-.+|+ .||.|||
T Consensus 354 ~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNI 430 (580)
T COG4618 354 GISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENI 430 (580)
T ss_pred cceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHH
Confidence 9999999999999999999999999999999988 679999999988753 456688999999766665 5999999
Q ss_pred HHHhhhcCCCCCCH-----HHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 571 KFSAWLRLPPEIDS-----ETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 571 ~~~~~~~~~~~~~~-----~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
. |..++.+. +.+.+.++|++- .+++.+||.+|+.|. .||||||||+++||||..||.+++||||-|+
T Consensus 431 a-----Rf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 431 A-----RFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred H-----hccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 5 22222222 334455677664 689999999998874 8999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+|++++|+ +|++-.+|+.+
T Consensus 503 LD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~-~G~~~~FG~r~ 556 (580)
T COG4618 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQ-DGRIAAFGPRE 556 (580)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeec-CChHHhcCCHH
Confidence 9999999999999999999999999999986 789999999998 69999999864
No 116
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7e-39 Score=346.98 Aligned_cols=212 Identities=25% Similarity=0.433 Sum_probs=179.0
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 46778887652 3469999999999999999999999999999999999987 57999999998764
Q ss_pred cc--cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 544 QK--TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 544 ~~--~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
.. ..++.++|++|++.+++.+|++||+.+....+ ....++..+.++++++.+|+.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 21 22346899999988888999999998765432 12333344568889999999887777764 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++ +.+|++++|+ +|++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~-~G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLH-RGRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEe-CCeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999986 34 4599999998 589998887
Q ss_pred C
Q 043954 701 L 701 (1045)
Q Consensus 701 ~ 701 (1045)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
No 117
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-39 Score=360.84 Aligned_cols=219 Identities=25% Similarity=0.360 Sum_probs=181.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++... ...+.+|+|||++|++||+++|+|+||||||||+|+|+|+.+ |.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 478999999874210 012469999999999999999999999999999999999987 5799999999875
Q ss_pred Cc-------------------ccccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 043954 543 VQ-------------------KTFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD 601 (1045)
Q Consensus 543 ~~-------------------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~ 601 (1045)
.. ...++.++||+|++ .+++ .||+||+.++.... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 12456789999986 3444 59999998864321 234445556788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHH
Q 043954 602 -DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVF 680 (1045)
Q Consensus 602 -~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~ 680 (1045)
+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 4566554 479999999999999999999999999999999999999999999999878999999999975 467
Q ss_pred HhcceEEEEecCcEEEEecCCC
Q 043954 681 EAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 681 ~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
+.||++++|+ +|+++..|+++
T Consensus 241 ~~adri~vl~-~G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMD-KGKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEE-CCEEEEeCCHH
Confidence 8899999998 59999999864
No 118
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=350.31 Aligned_cols=216 Identities=22% Similarity=0.345 Sum_probs=183.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 367888887652 3469999999999999999999999999999999999887 5799999999886
Q ss_pred Ccc----cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQK----TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
... ..++.++|++|++.+++.+||+||+.+....+. ..+.++.+++++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSG 140 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCH
Confidence 431 134568999999988888999999987643221 1233344566889999999987777665 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.+++++++|+|+|++||++. ++.+.||++++|+ +|++++.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~~ 218 (241)
T PRK10895 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIAH 218 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEee
Confidence 9999999999999999999999999999999999999999999877999999999985 5788999999998 5899998
Q ss_pred cCCC
Q 043954 699 GMLG 702 (1045)
Q Consensus 699 G~~~ 702 (1045)
|+++
T Consensus 219 ~~~~ 222 (241)
T PRK10895 219 GTPT 222 (241)
T ss_pred CCHH
Confidence 8764
No 119
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.7e-39 Score=344.38 Aligned_cols=211 Identities=24% Similarity=0.361 Sum_probs=174.2
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+... .+.+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4678888765311 012469999999999999999999999999999999999987 57999999998764
Q ss_pred cc---c---cc-ccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 043954 544 QK---T---FA-RISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 544 ~~---~---~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 616 (1045)
.. . .+ +.++|++|++.+++.+|++||+.+....+. ....+..+++.++++.+|+.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 12 468999999888889999999988654321 223333456788999999988777776 379
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+ +.+|++++|+ +|++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~-~G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMK-DGQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEe-CCEe
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 5689999998 4776
Q ss_pred E
Q 043954 696 I 696 (1045)
Q Consensus 696 ~ 696 (1045)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
No 120
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.2e-40 Score=397.65 Aligned_cols=247 Identities=23% Similarity=0.391 Sum_probs=196.8
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.+... ... . +.....++++|++|.++. +++++|+|+
T Consensus 303 ~~~~~~~s~~ri~~ll~~~~~~~~~~---~~~---~------~~~~~~i~~~~v~f~y~~-----------~~~~il~~i 359 (574)
T PRK11160 303 HLGQVIASARRINEITEQKPEVTFPT---TST---A------AADQVSLTLNNVSFTYPD-----------QPQPVLKGL 359 (574)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCc---ccC---C------CCCCCeEEEEEEEEECCC-----------CCCcceecc
Confidence 34566778899988876554321110 000 0 011236899999997642 234699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++++|||.++|+||||||||||+|+|+|.++ |.+|+|.+||.++.+ ..+++.++||+|++.+++ .|++||+.+
T Consensus 360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~ 436 (574)
T PRK11160 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLL 436 (574)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhc
Confidence 99999999999999999999999999999987 679999999998653 356778999999887775 599999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCC------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIEL------DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L------~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
+.. +.+++ .++++++.+++ ++..||.+|+.|. .||||||||++|||||+++|++|+||||||+|
T Consensus 437 ~~~-----~~~~~----~i~~al~~~~l~~~i~~p~GldT~vge~g~-~LSgGqrqRialARall~~~~ililDE~ts~l 506 (574)
T PRK11160 437 AAP-----NASDE----ALIEVLQQVGLEKLLEDDKGLNAWLGEGGR-QLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506 (574)
T ss_pred CCC-----ccCHH----HHHHHHHHcCCHHHHcCccccCchhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 531 22222 35566666665 4567899998764 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|+ +|++++.|+.+
T Consensus 507 D~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~-~G~i~~~g~~~ 558 (574)
T PRK11160 507 DAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMD-NGQIIEQGTHQ 558 (574)
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEe-CCeEEEeCCHH
Confidence 9999999999999985 4899999999986 467799999998 59999999864
No 121
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-39 Score=355.60 Aligned_cols=217 Identities=24% Similarity=0.328 Sum_probs=183.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++.. +.+.+|+|+|++|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 47789999876311 12459999999999999999999999999999999999987 5799999999986
Q ss_pred Cc---ccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQ---KTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
.. ...++.++|++|++ ..++..||+||+.+..... ..+.++.+++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456789999986 4677889999999865322 2345555667899999999988778776 37999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|+|++||++. ++ ..||++++|+ +|+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999976 34 6899999998 599999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99853
No 122
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7.6e-39 Score=349.14 Aligned_cols=214 Identities=24% Similarity=0.330 Sum_probs=178.4
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGGY 540 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g~ 540 (1045)
++++|+++.+. ++.+++|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|+
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 46788887652 245999999999999999999999999999999999988631 12899999999
Q ss_pred eCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 043954 541 PKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVGIP 611 (1045)
Q Consensus 541 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 611 (1045)
+... ...++.++|++|+..+++ .|++||+.+....+. ..+.++.++.++++++.+|+. +..++.+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 142 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA--- 142 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc---
Confidence 8642 123567899999988888 999999998654331 123344456688999999997 5556554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.+|++++|+
T Consensus 143 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~- 217 (247)
T TIGR00972 143 --LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFY- 217 (247)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEE-
Confidence 47999999999999999999999999999999999999999999999977 489999999986 5778899999998
Q ss_pred CcEEEEecCC
Q 043954 692 GGRIIYSGML 701 (1045)
Q Consensus 692 gG~~~~~G~~ 701 (1045)
+|++++.|++
T Consensus 218 ~G~i~~~~~~ 227 (247)
T TIGR00972 218 DGELVEYGPT 227 (247)
T ss_pred CCEEEEeCCH
Confidence 5899999875
No 123
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-39 Score=349.22 Aligned_cols=206 Identities=22% Similarity=0.309 Sum_probs=177.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 478999998652 3469999999999999999999999999999999999987 5799999999875
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
. ..++.++|++|++.+++.+||+||+.+... . ..+++++++++.+++.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 245668999999988888999999987421 0 11345788999999988777776 479999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +|+|+|++||++. ++.+.||++++|+ +|++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIE-EGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 5678899999998 5899988764
No 124
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.6e-39 Score=342.55 Aligned_cols=194 Identities=29% Similarity=0.415 Sum_probs=165.1
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCc-cCCCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDI-HSPQI 564 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 564 (1045)
+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 569999999999999999999999999999999999887 579999999987642 234567899999864 46678
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 043954 565 TVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 644 (1045)
Q Consensus 565 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPts 644 (1045)
|++||+.+..... .....+.++.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764322 1233334456788999999987777776 3799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 645 GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|++ |+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-GK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CC
Confidence 99999999999999999877999999999976 56677999999984 53
No 125
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.1e-39 Score=350.52 Aligned_cols=214 Identities=20% Similarity=0.274 Sum_probs=181.4
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 367899988652 3569999999999999999999999999999999999987 5789999999875
Q ss_pred Cc----------------ccccccceEeecCCccCCCCCHHHHHHHHhh-hcCCCCCCHHHHHHHHHHHHHHcCCCccc-
Q 043954 543 VQ----------------KTFARISGYCEQTDIHSPQITVEESVKFSAW-LRLPPEIDSETKARFVEEVIETIELDDIK- 604 (1045)
Q Consensus 543 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~l~L~~~~- 604 (1045)
.. ...++.++|++|++.+++.+||+||+.++.. .. .....+.++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1234568999999999999999999987532 21 123444456788999999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcc
Q 043954 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFD 684 (1045)
Q Consensus 605 ~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 684 (1045)
++.+ +.||||||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+.||
T Consensus 147 ~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 5554 479999999999999999999999999999999999999999999999877999999999986 5667899
Q ss_pred eEEEEecCcEEEEecCC
Q 043954 685 ELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 685 ~v~~l~~gG~~~~~G~~ 701 (1045)
++++|+ +|++++.|+.
T Consensus 221 ~i~~l~-~G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLH-QGKIEEEGAP 236 (257)
T ss_pred EEEEEE-CCEEEEeCCH
Confidence 999998 5899998875
No 126
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-39 Score=355.43 Aligned_cols=218 Identities=24% Similarity=0.365 Sum_probs=181.4
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++... ...+++|+|||++|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899998774210 012469999999999999999999999999999999999987 57999999998863
Q ss_pred c-------ccccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 043954 544 Q-------KTFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQ 613 (1045)
Q Consensus 544 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 613 (1045)
. ...++.+||++|++ .+++ .||+||+.+..... ..+.++..++++++++.+||. +..++.+
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP----- 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 2 13456799999985 3444 59999999864322 234455566788999999996 5666665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ +
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~-~ 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK-E 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999764 899999999976 5678899999998 5
Q ss_pred cEEEEecCCC
Q 043954 693 GRIIYSGMLG 702 (1045)
Q Consensus 693 G~~~~~G~~~ 702 (1045)
|++++.|+++
T Consensus 222 G~i~~~g~~~ 231 (286)
T PRK13646 222 GSIVSQTSPK 231 (286)
T ss_pred CEEEEECCHH
Confidence 8999999753
No 127
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.7e-39 Score=343.74 Aligned_cols=199 Identities=29% Similarity=0.451 Sum_probs=165.3
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccC--CCCCH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHS--PQITV 566 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv 566 (1045)
+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999887 57999999998753 3456789999987653 34799
Q ss_pred HHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 567 EESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 567 ~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+||+.+....... .....++.+++++++++.+++.+..++.++ .||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 001112334568899999999877777763 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|+ +| +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLN-RT-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEc-Cc-EeecC
Confidence 9999999999999999878999999999986 5678899999997 45 55544
No 128
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-38 Score=347.17 Aligned_cols=214 Identities=25% Similarity=0.366 Sum_probs=180.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence 367888888652 2469999999999999999999999999999999999987 5799999999875
Q ss_pred C------c---ccccccceEeecCCccCCCCCHHHHHHHH-hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 043954 543 V------Q---KTFARISGYCEQTDIHSPQITVEESVKFS-AWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPG 612 (1045)
Q Consensus 543 ~------~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 612 (1045)
. . ...++.++|++|++.+++.+|+.||+.+. .... ....++..+.++++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 0 12345689999999999999999999753 2221 1223334456888999999987777776
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|+ +
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~-~ 216 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME-N 216 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 379999999999999999999999999999999999999999999999877999999999986 5667899999998 5
Q ss_pred cEEEEecCC
Q 043954 693 GRIIYSGML 701 (1045)
Q Consensus 693 G~~~~~G~~ 701 (1045)
|++++.|+.
T Consensus 217 g~i~~~~~~ 225 (242)
T PRK11124 217 GHIVEQGDA 225 (242)
T ss_pred CEEEEeCCH
Confidence 999998875
No 129
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-39 Score=354.82 Aligned_cols=216 Identities=26% Similarity=0.371 Sum_probs=183.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 478999998763 12469999999999999999999999999999999999987 5799999999986
Q ss_pred Cc-----ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 043954 543 VQ-----KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 543 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 616 (1045)
.. ...++.++|++|++. .+...||+||+.+..... ..+.++.+++++++++.+||.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 234567899999863 345679999998864322 2234444567889999999988888776 479
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ +|++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~-~G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMK-EGRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999875 899999999986 4667899999998 5899
Q ss_pred EEecCCC
Q 043954 696 IYSGMLG 702 (1045)
Q Consensus 696 ~~~G~~~ 702 (1045)
++.|+.+
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999864
No 130
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-39 Score=348.09 Aligned_cols=213 Identities=20% Similarity=0.342 Sum_probs=178.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 477899988652 3569999999999999999999999999999999999987 5799999999886
Q ss_pred Ccc----cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCC
Q 043954 543 VQK----TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETI-ELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LS 617 (1045)
... ..++.++|++|+..+++.+||+||+.+..... ..++.++.++++++.+ ++.+..++.+ +.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCC
Confidence 432 13456899999998899899999998754221 1122234466777777 4665555554 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|+ +|++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLE-NGHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEe-CCEEEe
Confidence 99999999999999999999999999999999999999999999878999999999986 5788999999998 589999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+++
T Consensus 218 ~~~~~ 222 (237)
T PRK11614 218 EDTGD 222 (237)
T ss_pred eCCHH
Confidence 99864
No 131
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-39 Score=367.26 Aligned_cols=203 Identities=23% Similarity=0.314 Sum_probs=176.8
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---c----ccccceEeecCCcc
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---T----FARISGYCEQTDIH 560 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~----~~~~~~~v~q~~~~ 560 (1045)
...+|+|+||++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|.++... . .++.++|++|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3458999999999999999999999999999999999987 5799999999986431 1 13468999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 043954 561 SPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMD 640 (1045)
Q Consensus 561 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLD 640 (1045)
++.+||+||+.+....+ ....++.+++++++++.+||.+..++.+ +.||||||||++|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999876543 1234445567889999999988888776 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 641 EPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 641 EPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|||+|||+.++..+.+.|+++++ .|+|+|++||+++ ++.+.+|++++|+ +|+++..|+++
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~-~G~i~~~g~~~ 250 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQ-NGEVVQVGTPD 250 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEE-CCEEEecCCHH
Confidence 99999999999999999999976 4899999999986 5778999999998 58999998764
No 132
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=354.31 Aligned_cols=220 Identities=24% Similarity=0.340 Sum_probs=181.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367888888663110 002469999999999999999999999999999999999987 5799999999876
Q ss_pred Cc-------ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 043954 543 VQ-------KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQ 613 (1045)
Q Consensus 543 ~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 613 (1045)
.. ...++.++|++|++. .+..+||.||+.+..... ....++.+++++++++.+||. +..++.++
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF---- 144 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc----
Confidence 32 123456899999862 333689999998765332 233445556788999999997 56777764
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|+ +|
T Consensus 145 -~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~-~G 221 (287)
T PRK13641 145 -ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE-HG 221 (287)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999877999999999976 5778999999998 59
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999753
No 133
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.5e-38 Score=346.34 Aligned_cols=218 Identities=22% Similarity=0.276 Sum_probs=177.0
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+..|.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 5778887652 346999999999999999999999999999999999984211579999999987643
Q ss_pred c---cc-cccceEeecCCccCCCCCHHHHHHHHhhhcCC--C--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 043954 545 K---TF-ARISGYCEQTDIHSPQITVEESVKFSAWLRLP--P--EIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSG 615 (1045)
Q Consensus 545 ~---~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~ 615 (1045)
. .. +..++|++|++.+++.+|++||+.+....... . ..+.++..++++++++.+++. +..++.++ .+
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 1 11 23479999999999999999999876432110 0 112233345688899999997 45566552 24
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHh-cceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEA-FDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG~ 694 (1045)
||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ .+... ||++++|+ +|+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~-~G~ 222 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL-DGR 222 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe-CCE
Confidence 9999999999999999999999999999999999999999999999877899999999986 45566 79999998 589
Q ss_pred EEEecCC
Q 043954 695 IIYSGML 701 (1045)
Q Consensus 695 ~~~~G~~ 701 (1045)
+++.|++
T Consensus 223 i~~~g~~ 229 (243)
T TIGR01978 223 IVKSGDV 229 (243)
T ss_pred EEEecCH
Confidence 9999875
No 134
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.6e-39 Score=425.59 Aligned_cols=260 Identities=21% Similarity=0.303 Sum_probs=199.9
Q ss_pred CCCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccc
Q 043954 415 PKMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHD 494 (1045)
Q Consensus 415 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~ 494 (1045)
+..+++..+.+|+.++++.+++.+.... +..... .. +.....++|+||+|+|+.. +++++|+|
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~-~~~~~~-~~-----~~~~g~I~f~nVsF~Y~~~----------~~~~vL~~ 1186 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDN-GGIRIK-NK-----NDIKGKIEIMDVNFRYISR----------PNVPIYKD 1186 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCC-cccccc-cC-----CCCCceEEEEEEEEECCCC----------CCCccccC
Confidence 3566788889999988876543211100 000000 00 0012358999999988532 13469999
Q ss_pred ccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---------------------------------------------
Q 043954 495 ITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--------------------------------------------- 529 (1045)
Q Consensus 495 vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~--------------------------------------------- 529 (1045)
+||+|+||+.+||+||||||||||+++|.|++++.
T Consensus 1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 (1466)
T PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGS 1266 (1466)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999988741
Q ss_pred -------eEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHH-----HHHHHH
Q 043954 530 -------IIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKA-----RFVEEV 594 (1045)
Q Consensus 530 -------~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~ 594 (1045)
+.+|+|++||+++.+ ..+|+.++||+|++.+| ..|++|||.++.. +.++++.. +.+++.
T Consensus 1267 ~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~-----~at~eeI~~A~k~A~l~~f 1340 (1466)
T PTZ00265 1267 GEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE-----DATREDVKRACKFAAIDEF 1340 (1466)
T ss_pred ccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC-----CCCHHHHHHHHHHcCCHHH
Confidence 258999999998753 45778899999988876 5799999998631 22333321 223333
Q ss_pred HHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEec
Q 043954 595 IETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV-RTGRTTVCTIH 673 (1045)
Q Consensus 595 l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H 673 (1045)
++ .|++.+||.+|+.|. .||||||||++|||||+++|+|||||||||+||+++++.|.+.|+++. .+++|+|+++|
T Consensus 1341 I~--~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaH 1417 (1466)
T PTZ00265 1341 IE--SLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417 (1466)
T ss_pred HH--hCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 43 467889999998775 799999999999999999999999999999999999999999999986 36899999999
Q ss_pred CCcHHHHHhcceEEEEecC---cEE-EEecCCC
Q 043954 674 QPSIDVFEAFDELLLMKAG---GRI-IYSGMLG 702 (1045)
Q Consensus 674 ~~~~~~~~~~d~v~~l~~g---G~~-~~~G~~~ 702 (1045)
+++ ..+.||+|++|+++ |++ ++.|+.+
T Consensus 1418 Rls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1418 RIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred hHH--HHHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 975 67889999999852 774 5899864
No 135
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.7e-38 Score=347.46 Aligned_cols=213 Identities=25% Similarity=0.331 Sum_probs=180.4
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5778887652 2469999999999999999999999999999999999887 579999999987532
Q ss_pred ----------------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 043954 545 ----------------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLV 608 (1045)
Q Consensus 545 ----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 608 (1045)
...++.++|++|++.+++..|+.||+.++.... .....++.++.++++++.+|+.+..++..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 144 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP 144 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh
Confidence 123567899999999999999999998753211 11233444556889999999987777665
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEE
Q 043954 609 GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 609 g~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.+|+++
T Consensus 145 -----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T TIGR03005 145 -----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVC 218 (252)
T ss_pred -----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 479999999999999999999999999999999999999999999998875 899999999986 5678899999
Q ss_pred EEecCcEEEEecCC
Q 043954 688 LMKAGGRIIYSGML 701 (1045)
Q Consensus 688 ~l~~gG~~~~~G~~ 701 (1045)
+|+ +|++++.|+.
T Consensus 219 ~l~-~G~i~~~g~~ 231 (252)
T TIGR03005 219 FFD-KGRIVEQGKP 231 (252)
T ss_pred EEE-CCEEEEeCCH
Confidence 998 5899998875
No 136
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=352.35 Aligned_cols=215 Identities=26% Similarity=0.386 Sum_probs=182.1
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67888988653 12359999999999999999999999999999999999987 67999999998764
Q ss_pred c---ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 544 Q---KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
. ...++.++|++|++. .+...||.||+.+..... ..+.++.+++++++++.++|.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234466899999863 344679999998765322 2344445567889999999988788776 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ +|++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~-~G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD-KGRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 5778999999998 5899999
Q ss_pred cCCC
Q 043954 699 GMLG 702 (1045)
Q Consensus 699 G~~~ 702 (1045)
|+++
T Consensus 220 g~~~ 223 (277)
T PRK13652 220 GTVE 223 (277)
T ss_pred CCHH
Confidence 9864
No 137
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=348.25 Aligned_cols=218 Identities=20% Similarity=0.247 Sum_probs=181.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 477899988652 3569999999999999999999999999999999999987 5799999999876
Q ss_pred Ccc---c-ccccceEeecCCccCCCCCHHHHHHHHhhhcCC----------CCC--CHHHHHHHHHHHHHHcCCCccccc
Q 043954 543 VQK---T-FARISGYCEQTDIHSPQITVEESVKFSAWLRLP----------PEI--DSETKARFVEEVIETIELDDIKDS 606 (1045)
Q Consensus 543 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~l~L~~~~~~ 606 (1045)
... . .+..++|++|++.+++.+||+||+.++...... ... ...+..+.++++++.+|+.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233478999999999999999999986431100 000 112233567888999999877777
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcce
Q 043954 607 LVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDE 685 (1045)
Q Consensus 607 ~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 685 (1045)
.++ .||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+
T Consensus 150 ~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 763 79999999999999999999999999999999999999999999999876 899999999986 57788999
Q ss_pred EEEEecCcEEEEecCCC
Q 043954 686 LLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 686 v~~l~~gG~~~~~G~~~ 702 (1045)
+++|+ +|++++.|+.+
T Consensus 224 i~~l~-~g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVN-QGTPLANGTPE 239 (255)
T ss_pred EEEEE-CCeEEecCCHH
Confidence 99998 58999998864
No 138
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.2e-39 Score=390.32 Aligned_cols=248 Identities=29% Similarity=0.397 Sum_probs=194.1
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.+.. .+ .+.....++++|++|+++. +++++|+|+
T Consensus 283 ~~~~~~~~~~ri~~~l~~~~~~~~~-----~~---------~~~~~~~i~~~~v~~~y~~-----------~~~~~l~~~ 337 (544)
T TIGR01842 283 QFSGARQAYKRLNELLANYPSRDPA-----MP---------LPEPEGHLSVENVTIVPPG-----------GKKPTLRGI 337 (544)
T ss_pred HHHHHHHHHHHHHHHHhCCccccCC-----CC---------CCCCCCeEEEEEEEEEcCC-----------CCccccccc
Confidence 4466777888988877554322110 00 0011235889999997642 235799999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++++|||.++|+||||||||||+|+|+|.++ |.+|+|.+||+++.. ...++.++|++|++.+++. |++||+.+
T Consensus 338 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~ 414 (544)
T TIGR01842 338 SFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIAR 414 (544)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhc
Confidence 99999999999999999999999999999987 679999999998643 3456789999999888765 99999975
Q ss_pred HhhhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 573 SAWLRLPPEIDSETKA-----RFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~-----~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
.. +..++++.. ...++.++ .+++..|+.+|+.| .+||||||||++|||||+++|++|+|||||||||
T Consensus 415 ~~-----~~~~~~~~~~~~~~~~~~~~i~--~l~~gl~t~~~~~g-~~LSgGq~qrl~lARall~~~~ililDEpts~LD 486 (544)
T TIGR01842 415 FG-----ENADPEKIIEAAKLAGVHELIL--RLPDGYDTVIGPGG-ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486 (544)
T ss_pred cC-----CCCCHHHHHHHHHHhChHHHHH--hCccccccccCCCc-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccC
Confidence 32 112333211 12334444 34566788888776 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 648 ARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 648 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
+++++++.+.|+++.++|+|+|+++|+++ ..+.||++++|+ +|++++.|+.+
T Consensus 487 ~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~-~G~i~~~g~~~ 538 (544)
T TIGR01842 487 EEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQ-DGRIARFGERD 538 (544)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCEEEeeCCHH
Confidence 99999999999998767899999999985 567899999998 58999999863
No 139
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.1e-38 Score=340.25 Aligned_cols=209 Identities=23% Similarity=0.363 Sum_probs=178.7
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4677776542 3469999999999999999999999999999999999887 679999999987643
Q ss_pred ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 043954 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRL 624 (1045)
Q Consensus 545 ~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv 624 (1045)
.. .+.++|++|++.+++.+|++||+.+....+. .. ++.++++++.+++.+..++.+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2468999999988888999999987654331 11 234678899999988777776 37999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 625 TIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 625 ~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
+|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+.||++++|+ +|+++..|++.+
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~~ 210 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIIS-EGVLGYQGKINK 210 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEe-CCEEEEecChhh
Confidence 9999999999999999999999999999999999999877999999999986 5678899999998 589999998653
No 140
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=351.31 Aligned_cols=214 Identities=23% Similarity=0.319 Sum_probs=180.9
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788887652 12459999999999999999999999999999999999887 57999999999864
Q ss_pred c----ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 544 Q----KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 544 ~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
. ...++.++|++|++. .++..|+.||+.+..... ..+.++.++.++++++.++|.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 233466899999864 466789999998765322 2344444566889999999988888776 37999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++ +.||++++|+ +|++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~-~G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMD-RGKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 34 6799999998 5899999
Q ss_pred cCCC
Q 043954 699 GMLG 702 (1045)
Q Consensus 699 G~~~ 702 (1045)
|+.+
T Consensus 217 g~~~ 220 (274)
T PRK13644 217 GEPE 220 (274)
T ss_pred CCHH
Confidence 9853
No 141
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=346.33 Aligned_cols=215 Identities=23% Similarity=0.276 Sum_probs=177.4
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 478999998652 246999999999999999999999999999999999987632 3589999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++ +||+||+.+...... .......++.++++++.+++. +..++.+
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 148 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA-- 148 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--
Confidence 87532 124567899999987774 899999988653321 112333455678888888873 3455554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ ++|+|++||+++ ++.+.+|++++|+
T Consensus 149 ---~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 149 ---LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999964 799999999986 5678899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|+++..|++
T Consensus 224 -~G~i~~~g~~ 233 (254)
T PRK14273 224 -NGCIEEESST 233 (254)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
No 142
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1e-38 Score=363.11 Aligned_cols=205 Identities=23% Similarity=0.350 Sum_probs=178.7
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee----CCc---cc---c-cccceEee
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP----KVQ---KT---F-ARISGYCE 555 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~----~~~---~~---~-~~~~~~v~ 555 (1045)
+...+|+|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|++ +.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999987 679999999963 221 11 1 24689999
Q ss_pred cCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 043954 556 QTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPS 635 (1045)
Q Consensus 556 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~ 635 (1045)
|+..+++.+||+||+.++...+ ..++++.+++++++++.+||.+..|+.++ .||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876443 23455566778999999999988888764 799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 636 IIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 636 illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
||+|||||+|||+.++.++.+.|++++++ |+|+|++||+++ ++.+.+|++++|+ +|+++..|++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~-~G~iv~~g~~~e 251 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIME-GGRIIQHGTPEE 251 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999999999999999999999999875 899999999986 5789999999998 599999998753
No 143
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=345.15 Aligned_cols=216 Identities=24% Similarity=0.291 Sum_probs=179.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGGY 540 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g~ 540 (1045)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67888887652 246999999999999999999999999999999999987532 46899999998
Q ss_pred eCCc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCCC
Q 043954 541 PKVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGIPGQ 613 (1045)
Q Consensus 541 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~ 613 (1045)
++.. ...++.++|++|++.+++.+||+||+.+....+.. ....++.++.++++++.++|.+ ..++.+
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~----- 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA----- 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc-----
Confidence 7642 23456789999998888899999999886533211 1123344556888999999854 345544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||++. ++.+.||++++|+ +|
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLY-KG 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEE-CC
Confidence 47999999999999999999999999999999999999999999999865 899999999986 5678899999998 58
Q ss_pred EEEEecCC
Q 043954 694 RIIYSGML 701 (1045)
Q Consensus 694 ~~~~~G~~ 701 (1045)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (250)
T PRK14247 222 QIVEWGPT 229 (250)
T ss_pred eEEEECCH
Confidence 99999875
No 144
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-38 Score=337.88 Aligned_cols=194 Identities=25% Similarity=0.386 Sum_probs=165.8
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccccceEeecCCccCCCCCHHHHHHH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-TFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999987 5799999999876432 234568999999999999999999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 652 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~ 652 (1045)
....+. .. .++.+++++++++.+++.+..++.+ ..||||||||++|||||+.+|++++|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 1233456889999999988777776 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 653 IVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 653 ~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
.+.+.|++++++ |+|+|++||++. ++.+.||++++|+ +|+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEE-CCEEeecC
Confidence 999999999764 899999999975 5678899999998 58887654
No 145
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=346.37 Aligned_cols=215 Identities=24% Similarity=0.307 Sum_probs=178.4
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIQGEIRVG 538 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~---~~~~G~I~~~ 538 (1045)
..++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+|+|+|..++ .+.+|+|.++
T Consensus 11 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 3578999988652 34699999999999999999999999999999999998753 1368999999
Q ss_pred CeeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccc
Q 043954 539 GYPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVG 609 (1045)
Q Consensus 539 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg 609 (1045)
|+++.. ...++.++|++|++.+++ +|++||+.+..... ..+.++.++.++++++.+++. +..++.+
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 152 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA- 152 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-
Confidence 987532 123567899999988777 89999999865332 123334445678899999884 3345544
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 610 IPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 610 ~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||++. ++.+.||++++|
T Consensus 153 ----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l 226 (258)
T PRK14268 153 ----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFF 226 (258)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999865 799999999976 567889999999
Q ss_pred ecCcEEEEecCC
Q 043954 690 KAGGRIIYSGML 701 (1045)
Q Consensus 690 ~~gG~~~~~G~~ 701 (1045)
+ +|++++.|++
T Consensus 227 ~-~G~i~~~~~~ 237 (258)
T PRK14268 227 L-MGELIEFGQT 237 (258)
T ss_pred E-CCEEEEeCCH
Confidence 8 5899999875
No 146
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=349.45 Aligned_cols=214 Identities=23% Similarity=0.351 Sum_probs=179.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788887652 3469999999999999999999999999999999999887 57999999999863
Q ss_pred c-----ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 Q-----KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
. ...++.++|++|++. .+...|+.||+.+..... ....++.++.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 123456899999865 244568999998764332 1233444456788999999988777776 3799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|+ +|++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLR-QGQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 5678899999998 589999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+++
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 99753
No 147
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.8e-38 Score=343.83 Aligned_cols=216 Identities=26% Similarity=0.351 Sum_probs=180.4
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56888887652 2469999999999999999999999999999999999887 57899999998764
Q ss_pred cc----cccccceEeecCCccCCCCCHHHHHHHHhhhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 043954 544 QK----TFARISGYCEQTDIHSPQITVEESVKFSAWLRLP--P---EIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 544 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 614 (1045)
.. ..++.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG----- 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----
Confidence 31 1234689999999999999999999886432100 0 01123344568899999999887777764
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||++++|+ +|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLH-QGS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEE-CCe
Confidence 7999999999999999999999999999999999999999999999976 799999999976 5678899999998 589
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
++..|+.+
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 99988753
No 148
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-38 Score=354.61 Aligned_cols=221 Identities=17% Similarity=0.251 Sum_probs=181.6
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC-C-eEEEEEEECCee
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG-G-IIQGEIRVGGYP 541 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~-~-~~~G~I~~~g~~ 541 (1045)
++++|+++.+... .+..++|+||||+|++||+++|+|+||||||||+++|+|+.++ + +++|+|.++|++
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6789999877421 1124699999999999999999999999999999999998753 1 468999999998
Q ss_pred CCcc---c----ccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccccc
Q 043954 542 KVQK---T----FARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD---IKDSLVG 609 (1045)
Q Consensus 542 ~~~~---~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg 609 (1045)
+... . +++.++|++|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+ ..+...
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p- 151 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYP- 151 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCc-
Confidence 6431 1 123689999987 47889999998876543321 2344555677899999999975 234443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEE
Q 043954 610 IPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLL 688 (1045)
Q Consensus 610 ~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~ 688 (1045)
++|||||||||+|||||+.+|++|++||||+|||+.++.++++.|++++++ |.|+|++||+++ .+.+.+|++++
T Consensus 152 ----~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 152 ----HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999864 899999999986 46688999999
Q ss_pred EecCcEEEEecCCC
Q 043954 689 MKAGGRIIYSGMLG 702 (1045)
Q Consensus 689 l~~gG~~~~~G~~~ 702 (1045)
|. +|++++.|+.+
T Consensus 227 m~-~G~ive~g~~~ 239 (326)
T PRK11022 227 MY-AGQVVETGKAH 239 (326)
T ss_pred EE-CCEEEEECCHH
Confidence 98 59999999864
No 149
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=350.85 Aligned_cols=216 Identities=25% Similarity=0.337 Sum_probs=183.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3789999986631 12469999999999999999999999999999999999987 5799999999986
Q ss_pred Cc---ccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQ---KTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
.. ...++.++|++|++ ..++..||.||+.+..... ....++.+++++++++.+||.+..++.++ .|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCH
Confidence 43 23356789999986 3677789999998865332 12344445678999999999988888764 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++ ..||++++|+ +|++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~-~G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMN-KGEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999986 34 4699999998 589999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+.+
T Consensus 221 ~g~~~ 225 (279)
T PRK13635 221 EGTPE 225 (279)
T ss_pred ECCHH
Confidence 99754
No 150
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=346.48 Aligned_cols=214 Identities=26% Similarity=0.404 Sum_probs=180.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 57888887652 3469999999999999999999999999999999999877 57999999998754
Q ss_pred c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 544 Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
. ...++.++|++|++.+++.+||+||+.+..... ....++.++.++++++.+++.+..++.++ .|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHH
Confidence 2 223456899999988878899999998854221 11222334567889999999887787763 799999
Q ss_pred HHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 621 RKRLTIAVELV------SNPSIIFMDEPTSGLDARAAAIVMRAVKNVV-RTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 621 rqRv~ia~aL~------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
|||++|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+.||++++|+ +|
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH-QG 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE-CC
Confidence 99999999999 5999999999999999999999999999998 56899999999986 5677999999998 58
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
+++..|+.+
T Consensus 218 ~i~~~~~~~ 226 (258)
T PRK13548 218 RLVADGTPA 226 (258)
T ss_pred EEEeeCCHH
Confidence 999988764
No 151
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-38 Score=341.67 Aligned_cols=211 Identities=23% Similarity=0.330 Sum_probs=175.6
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 5678877552 3469999999999999999999999999999999999987 579999999987643
Q ss_pred c----cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCHH
Q 043954 545 K----TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIE-LDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 545 ~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgG 619 (1045)
. ..++.++|++|+..+++.+|+.||+.+....+. .. .++..+++++.++ +.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHH
Confidence 1 124568999999999999999999988654321 11 1223566777776 555566665 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||++++|+ +|+++..
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999875 899999999986 5667899999998 5899999
Q ss_pred cCCCc
Q 043954 699 GMLGR 703 (1045)
Q Consensus 699 G~~~~ 703 (1045)
|+.++
T Consensus 214 ~~~~~ 218 (230)
T TIGR03410 214 GAGDE 218 (230)
T ss_pred CCHHH
Confidence 98653
No 152
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-38 Score=354.44 Aligned_cols=226 Identities=22% Similarity=0.277 Sum_probs=185.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+....+.. . ..+...+|+|||++|++||+++|+|+||||||||+++|+|+.+ +.+|+|.++|+++
T Consensus 5 ~l~v~nl~~~~~~~~~~~--~-~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF--K-PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc--c-cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478899998875321100 0 0113569999999999999999999999999999999999987 5689999999986
Q ss_pred Ccc------cccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 043954 543 VQK------TFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQ 613 (1045)
Q Consensus 543 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 613 (1045)
... .+++.++||+|++ .+.+.+|+.+++....... ....+++.++++.++++.+||. +..++.+
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 431 2456799999987 5888999999998754332 1234455567789999999996 3566665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
++|||||||||+|||||+.+|++|++||||+|||..++.+++++|+++.++ |.|+|++||+++ .+.+.||++++|. +
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~-~ 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY-L 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999875 999999999976 4667899999998 5
Q ss_pred cEEEEecCCC
Q 043954 693 GRIIYSGMLG 702 (1045)
Q Consensus 693 G~~~~~G~~~ 702 (1045)
|++++.|+.+
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 9999999864
No 153
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.7e-38 Score=346.99 Aligned_cols=224 Identities=23% Similarity=0.323 Sum_probs=181.4
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+....... ..+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67888888763210000 0113579999999999999999999999999999999999987 57999999998764
Q ss_pred cc------cccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 043954 544 QK------TFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQS 614 (1045)
Q Consensus 544 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 614 (1045)
.. ..++.++|++|++ .+.+.+||+||+.+..... .....++.+++++++++.+++. +..+..+ .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 21 1345689999986 4667899999998754321 1122333455688999999996 5667665 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+.+|++++|+ +|
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KG 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CC
Confidence 79999999999999999999999999999999999999999999999875 899999999976 5667899999998 58
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
++++.|+.+
T Consensus 228 ~i~~~g~~~ 236 (265)
T TIGR02769 228 QIVEECDVA 236 (265)
T ss_pred EEEEECCHH
Confidence 999999864
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-38 Score=347.38 Aligned_cols=218 Identities=24% Similarity=0.362 Sum_probs=181.6
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67888887652 3569999999999999999999999999999999999877 57899999998753
Q ss_pred c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 544 Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
. ...++.++|++|+..+++.+|+.||+.++...... .....+...+.++++++.+++.+..++.+ ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 23345689999998888889999999875311000 01111223456788999999987777776 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|+ +|+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLA-NGHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEE-CCeEEEEc
Confidence 999999999999999999999999999999999999999999877999999999986 5788999999998 58999998
Q ss_pred CCCc
Q 043954 700 MLGR 703 (1045)
Q Consensus 700 ~~~~ 703 (1045)
+.++
T Consensus 221 ~~~~ 224 (255)
T PRK11231 221 TPEE 224 (255)
T ss_pred CHHH
Confidence 8653
No 155
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=348.05 Aligned_cols=218 Identities=29% Similarity=0.402 Sum_probs=182.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478999988652 3469999999999999999999999999999999999887 5789999999875
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
.. ...++.++|++|+..+++.+|+.||+.+....... ........+++++++++.+++.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCH
Confidence 32 23445789999998888899999999875321100 001112234567889999999877777764 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||++++|+ +|+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 5778999999998 589999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+.+
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 98764
No 156
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.2e-38 Score=339.27 Aligned_cols=213 Identities=25% Similarity=0.377 Sum_probs=177.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47899998865311 001359999999999999999999999999999999999987 5799999999876
Q ss_pred Cccc------c-cccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 543 VQKT------F-ARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+.+++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 246899999988889999999998765332 1233344567889999999988777776 37
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ +.+|++++|+ +|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~-~g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLV-NGQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 34 6699999998 588
Q ss_pred EEE
Q 043954 695 IIY 697 (1045)
Q Consensus 695 ~~~ 697 (1045)
+++
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 864
No 157
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-38 Score=344.41 Aligned_cols=218 Identities=24% Similarity=0.284 Sum_probs=179.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 367889988652 246999999999999999999999999999999999987642 3589999999
Q ss_pred eeCC--c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKV--Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
+++. . ...++.++|++|++.+++.+||.||+.+....+.. ....++..+.++++++.+++.+ ..++.+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 147 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDYP-- 147 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccCh--
Confidence 8764 1 13456789999999999999999999886543210 1123334456788899888843 234443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||++++|+
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 148 ---SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999865 699999999986 5678899999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|++++.|+++
T Consensus 223 -~G~i~~~~~~~ 233 (253)
T PRK14267 223 -LGKLIEVGPTR 233 (253)
T ss_pred -CCEEEEeCCHH
Confidence 58999998753
No 158
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-38 Score=347.60 Aligned_cols=217 Identities=22% Similarity=0.366 Sum_probs=182.4
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.++ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~-----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~ 72 (271)
T PRK13632 6 VMIKVENVSFSYP-----------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGIT 72 (271)
T ss_pred eEEEEEeEEEEcC-----------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 3578999998652 123569999999999999999999999999999999999987 579999999998
Q ss_pred CCc---ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 542 KVQ---KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 542 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
+.. ...++.++|++|++. .++.+||+||+.+..... ..+.++.++.++++++.++|.+..++.+ +.||
T Consensus 73 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 144 (271)
T PRK13632 73 ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLS 144 (271)
T ss_pred cCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCC
Confidence 643 234567899999863 667789999998864322 1233444566889999999988888876 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|+|++||+++ ++ ..||++++|+ +|+++
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i~ 221 (271)
T PRK13632 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFS-EGKLI 221 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999876 589999999986 34 5799999998 58999
Q ss_pred EecCCC
Q 043954 697 YSGMLG 702 (1045)
Q Consensus 697 ~~G~~~ 702 (1045)
..|+.+
T Consensus 222 ~~g~~~ 227 (271)
T PRK13632 222 AQGKPK 227 (271)
T ss_pred EecCHH
Confidence 988753
No 159
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.4e-38 Score=341.26 Aligned_cols=202 Identities=31% Similarity=0.444 Sum_probs=171.6
Q ss_pred cccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccccceEee-cCCccCC
Q 043954 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ--KTFARISGYCE-QTDIHSP 562 (1045)
Q Consensus 486 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~--~~~~~~~~~v~-q~~~~~~ 562 (1045)
++++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|++... ...++.++|++ |++.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 345679999999999999999999999999999999999887 579999999987432 23445789997 5567778
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP 642 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP 642 (1045)
.+|++||+.+....+ ....++..+.++++++.+++.+..++.++ .||||||||++|||||+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 899999998865432 12333445567889999999888888774 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 643 TSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 643 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|+|||+.+++.+.+.|++++++ |+|+|++||+++ ++.+.||++++|. +|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEecC
Confidence 9999999999999999999765 899999999986 5678899999998 58988765
No 160
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.2e-38 Score=346.26 Aligned_cols=221 Identities=25% Similarity=0.355 Sum_probs=182.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIQGEIRVGGYP 541 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~-~~~G~I~~~g~~ 541 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 467888888652 356999999999999999999999999999999999987642 246999999987
Q ss_pred CCc--------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccc
Q 043954 542 KVQ--------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP-----EIDSETKARFVEEVIETIELDDIKDSLV 608 (1045)
Q Consensus 542 ~~~--------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~v 608 (1045)
+.. ...++.++|++|++.+++.+||.||+.+......+. ....++.+++++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 122456899999998899999999998753211000 0112233456889999999987777776
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEE
Q 043954 609 GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 609 g~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
+ .||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4 79999999999999999999999999999999999999999999999864 899999999986 4778999999
Q ss_pred EEecCcEEEEecCCCc
Q 043954 688 LMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 688 ~l~~gG~~~~~G~~~~ 703 (1045)
+|+ +|++++.|++++
T Consensus 225 ~l~-~g~i~~~g~~~~ 239 (262)
T PRK09984 225 ALR-QGHVFYDGSSQQ 239 (262)
T ss_pred EEE-CCEEEEeCCHHH
Confidence 998 589999998653
No 161
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.6e-39 Score=398.61 Aligned_cols=247 Identities=27% Similarity=0.415 Sum_probs=195.1
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.... .... .+.....++++|++|+++. +++.+|+|+
T Consensus 420 ~~~~~~~~~~ri~~~l~~~~e~~~~----~~~~--------~~~~~~~i~~~~vsf~y~~-----------~~~~il~~i 476 (694)
T TIGR01846 420 DFQQTGIALERLGDILNSPTEPRSA----GLAA--------LPELRGAITFENIRFRYAP-----------DSPEVLSNL 476 (694)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCC----CCCC--------CCCCCCeEEEEEEEEEcCC-----------CCccccccc
Confidence 4567778889998887654432110 0000 0111235899999997742 235699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||.++|+|+||||||||+|+|+|.++ |.+|+|++||+++.+ ..+++.++||+|++.+++ .|++||+.+
T Consensus 477 ~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~ 553 (694)
T TIGR01846 477 NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIAL 553 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhc
Confidence 99999999999999999999999999999987 579999999998653 356778999999877765 699999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETI-------ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. +..+.++ +.++++.. .+++..||.+|+.| .+||||||||++|||||+++|++|+||||||+
T Consensus 554 ~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~~g-~~LSgGq~qri~lARall~~~~ililDEpts~ 623 (694)
T TIGR01846 554 CN-----PGAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEATSA 623 (694)
T ss_pred CC-----CCCCHHH----HHHHHHHcChHHHHHhCcCccCcEecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence 42 1223332 23333333 35567899999877 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++++.+.|+++. +++|+|++||+++ ..+.||++++|+ +|++++.|+.+
T Consensus 624 LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~-~G~i~~~g~~~ 676 (694)
T TIGR01846 624 LDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE-KGQIAESGRHE 676 (694)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe-CCEEEEeCCHH
Confidence 99999999999999984 5899999999985 567799999998 59999999864
No 162
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-38 Score=331.75 Aligned_cols=196 Identities=29% Similarity=0.594 Sum_probs=165.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIQGEIRVGGYP 541 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~-~~~G~I~~~g~~ 541 (1045)
.+.|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999988643 13467999999999999999999999999999999999987633 579999999988
Q ss_pred CCc--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 542 KVQ--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 542 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
... ...++.++|++|++.+++.+||+||+.+..... .+..+ ..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHH
Confidence 643 234567899999999999999999998753210 23333 369999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+.||++++|+ +|++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~-~G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY-EGRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE-CCEEEec
Confidence 999999999999999999999999999999999999999999875 67888877775446788999999998 5898876
Q ss_pred c
Q 043954 699 G 699 (1045)
Q Consensus 699 G 699 (1045)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
No 163
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-39 Score=335.60 Aligned_cols=202 Identities=24% Similarity=0.319 Sum_probs=184.7
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc------cc-ccccceEeecCCccCC
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ------KT-FARISGYCEQTDIHSP 562 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~------~~-~~~~~~~v~q~~~~~~ 562 (1045)
.-++|+|++++.||+..|||-||||||||+++|.++.+ |++|+|+++|.++.. .. +++.+++|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999999988 689999999998642 12 3466899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP 642 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP 642 (1045)
+.||.||..|+..++ ..+++++++++.+.++.+||++..+.+. ++|||||||||.|||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998765 4678899999999999999999999887 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 643 TSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 643 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
+|+|||--+.++.+.|.++.++ ++|||++|||++ |.++.-|||.+|+ +|+++..|++++
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 9999999999999999998766 899999999997 7899999999997 699999999864
No 164
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-38 Score=346.52 Aligned_cols=220 Identities=24% Similarity=0.316 Sum_probs=183.6
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
+..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+
T Consensus 5 ~~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~ 69 (265)
T PRK10253 5 VARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGE 69 (265)
T ss_pred ccEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCE
Confidence 34688999998763 3469999999999999999999999999999999999987 57899999998
Q ss_pred eCCc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 043954 541 PKVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 541 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 616 (1045)
++.. ...++.++|++|++.+++.+|++||+.+...-..+ .....+..++.++++++.+++.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 144 (265)
T PRK10253 70 HIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTL 144 (265)
T ss_pred EhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccC
Confidence 7642 22345689999999888899999999875211100 00011223456788999999987777776 479
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||++. ++.+.||++++|+ +|++
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i 222 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKI 222 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999874 899999999986 5789999999998 5899
Q ss_pred EEecCCC
Q 043954 696 IYSGMLG 702 (1045)
Q Consensus 696 ~~~G~~~ 702 (1045)
++.|+.+
T Consensus 223 ~~~g~~~ 229 (265)
T PRK10253 223 VAQGAPK 229 (265)
T ss_pred EEeCCHH
Confidence 9999864
No 165
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-38 Score=348.83 Aligned_cols=219 Identities=26% Similarity=0.349 Sum_probs=178.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++... ...+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888988763110 011469999999999999999999999999999999999987 57999999998764
Q ss_pred c-------ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 043954 544 Q-------KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQS 614 (1045)
Q Consensus 544 ~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 614 (1045)
. ...++.++|++|++. .+...||+||+.+..... ..+.++.++.++++++.++|. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP-----F 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----c
Confidence 2 123456899999862 233469999998764322 123344455678899999997 3556665 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||++++|+ +|+
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 222 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE-KGK 222 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999999877999999999986 5678899999998 589
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (280)
T PRK13649 223 LVLSGKPK 230 (280)
T ss_pred EEEeCCHH
Confidence 99988753
No 166
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=7.4e-38 Score=353.06 Aligned_cols=225 Identities=21% Similarity=0.311 Sum_probs=183.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIQGEIRVGGYP 541 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~-~~~G~I~~~g~~ 541 (1045)
.++++|+++.+... .+...+|+||||+|++||+++|+|+||||||||+++|+|+.++. ..+|+|.++|++
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47899999876421 12356999999999999999999999999999999999988631 148999999998
Q ss_pred CCc---cc---cc-ccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 043954 542 KVQ---KT---FA-RISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPG 612 (1045)
Q Consensus 542 ~~~---~~---~~-~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 612 (1045)
+.. .. .+ +.++||+|++ .+.+.+|+.+++........ ..+.++..+++.++++.++|.+..+. .+ ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-MK-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-hc-CC
Confidence 643 11 12 4689999997 68899999999987644321 23455556678899999999754322 11 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
.++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|++++++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 3579999999999999999999999999999999999999999999999875 899999999986 4667899999998
Q ss_pred CcEEEEecCCC
Q 043954 692 GGRIIYSGMLG 702 (1045)
Q Consensus 692 gG~~~~~G~~~ 702 (1045)
+|++++.|+.+
T Consensus 237 ~G~ive~g~~~ 247 (330)
T PRK09473 237 AGRTMEYGNAR 247 (330)
T ss_pred CCEEEEECCHH
Confidence 59999999864
No 167
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-38 Score=343.77 Aligned_cols=218 Identities=22% Similarity=0.309 Sum_probs=179.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++. |.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367889988652 246999999999999999999999999999999999987532 3699999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 610 (1045)
+++.. ...++.++|++|+..+++.+||+||+.+....+. ....++.++.++++++.+++. +..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG-- 146 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--
Confidence 87631 2345678999999989999999999988654321 112334455678889999884 3344444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 147 ---GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 47999999999999999999999999999999999999999999999864 689999999986 5778999999996
Q ss_pred -----cCcEEEEecCCC
Q 043954 691 -----AGGRIIYSGMLG 702 (1045)
Q Consensus 691 -----~gG~~~~~G~~~ 702 (1045)
++|++++.|+++
T Consensus 222 ~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 222 LEATGKPGRLVEIDDTE 238 (258)
T ss_pred cccCCCCceEEecCCHH
Confidence 258999998753
No 168
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.5e-38 Score=334.56 Aligned_cols=209 Identities=25% Similarity=0.341 Sum_probs=175.5
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. .+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccc
Confidence 5677877542 14679999999999999999999999999999999987 579999999988643
Q ss_pred -ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 545 -KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 545 -~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
...++.++|++|++.+++.+|+.||+.+...... . ...+.+++++++++.+++.+..++.+ +.||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHH
Confidence 2345678999999999999999999987532211 1 11222455788999999988777776 4799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.+.+|++++|+ +|+++..|+
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 99999999999999999999999999999999999998765 899999999975 5677899999998 589998874
No 169
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-38 Score=347.10 Aligned_cols=215 Identities=28% Similarity=0.375 Sum_probs=180.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56888888652 12459999999999999999999999999999999999887 56899999998863
Q ss_pred c-----ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 Q-----KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
. ...++.++|++|++. .+...||.||+.+..... ....++..+++.++++.++|.+..++.++ .||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCC
Confidence 1 123567899999863 334579999998764321 22344455668899999999888888764 799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|+ +|++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~-~G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMS-DGKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999976 5677899999998 589999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+++
T Consensus 218 ~g~~~ 222 (275)
T PRK13639 218 EGTPK 222 (275)
T ss_pred eCCHH
Confidence 99764
No 170
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.1e-38 Score=345.11 Aligned_cols=217 Identities=26% Similarity=0.390 Sum_probs=180.4
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 46788887652 3569999999999999999999999999999999999887 57899999998764
Q ss_pred c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 544 Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
. ...++.++|++|+..+++.+||+||+.+....... .....++..++++++++.+++.+..++.++ .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHH
Confidence 3 22345689999998778889999999875311000 001112234567889999999887777763 79999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.||++++|+ +|+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLD-GGRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCCEEEec
Confidence 999999999999999999999999999999999999999999877899999999986 5778999999998 58999998
Q ss_pred CCC
Q 043954 700 MLG 702 (1045)
Q Consensus 700 ~~~ 702 (1045)
+.+
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 864
No 171
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-38 Score=337.84 Aligned_cols=224 Identities=23% Similarity=0.332 Sum_probs=184.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECCe
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIQGEIRVGGY 540 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~--~-~~~G~I~~~g~ 540 (1045)
++++||+.++.... +..++++||||++++||++||+|.|||||||+.+.|.|+.++ + ..+|+|.++|+
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 46788887765421 245799999999999999999999999999999999998762 2 36799999999
Q ss_pred eCCc---c---c-ccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHHHcCCCccccccccC
Q 043954 541 PKVQ---K---T-FARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEI-DSETKARFVEEVIETIELDDIKDSLVGI 610 (1045)
Q Consensus 541 ~~~~---~---~-~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~vg~ 610 (1045)
++.. + . +.+.+++++|++ .+.|.+||.+.+.-...... .. ++++.++++.++++.+|+++.....-..
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 7532 1 1 235689999985 68899999999877654321 22 3555677889999999998643332222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
+++|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++|||+. -+.+.||||.||
T Consensus 151 --PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 151 --PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred --CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 358999999999999999999999999999999999999999999999987 4999999999987 488999999999
Q ss_pred ecCcEEEEecCCC
Q 043954 690 KAGGRIIYSGMLG 702 (1045)
Q Consensus 690 ~~gG~~~~~G~~~ 702 (1045)
. .|++|+.|+.+
T Consensus 228 Y-aG~iVE~g~~~ 239 (316)
T COG0444 228 Y-AGRIVEEGPVE 239 (316)
T ss_pred E-CcEEEEeCCHH
Confidence 8 59999999974
No 172
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-38 Score=389.64 Aligned_cols=211 Identities=29% Similarity=0.437 Sum_probs=177.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|++|.++. ++++|+|+|++++|||.++|+|+||||||||+|+|+|+++ |.+|+|.+||.++
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEh
Confidence 5889999998741 2459999999999999999999999999999999999988 5799999999986
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPG 612 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~ 612 (1045)
.. ...++.++|++|++.+++ .|++||+.++. ++.++++ ++++++.++ +++..||.+|+.|
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~g 469 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDATDEE----MRAAAERAQAHDFIERKPDGYDTVVGERG 469 (588)
T ss_pred hhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCCC
Confidence 53 456778999999887775 69999998752 1223332 333344333 5567899998776
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
+.||||||||++|||||+++|+|++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|+ +
T Consensus 470 -~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~-~ 544 (588)
T PRK13657 470 -RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFD-N 544 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEE-C
Confidence 4799999999999999999999999999999999999999999999874 4899999999975 678899999998 5
Q ss_pred cEEEEecCCC
Q 043954 693 GRIIYSGMLG 702 (1045)
Q Consensus 693 G~~~~~G~~~ 702 (1045)
|+++..|+.+
T Consensus 545 G~i~~~g~~~ 554 (588)
T PRK13657 545 GRVVESGSFD 554 (588)
T ss_pred CEEEEeCCHH
Confidence 9999999853
No 173
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-38 Score=377.16 Aligned_cols=222 Identities=22% Similarity=0.296 Sum_probs=187.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++. ++.+|+|||+++++||+++|+||||||||||+|+|+|..++++++|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 478899988652 3569999999999999999999999999999999999887434799999999986
Q ss_pred Cccc----ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQKT----FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
.... .++.++|++|++.+++.+||+||+.+....+.....+.++.+++++++++.+++.+..++.++ +|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCH
Confidence 4321 235689999998889999999999886532211112333445568899999999888888774 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|+ +|++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~-~G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR-DGRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE-CCEEeee
Confidence 9999999999999999999999999999999999999999999888999999999986 5778899999998 5899999
Q ss_pred cCCCcc
Q 043954 699 GMLGRH 704 (1045)
Q Consensus 699 G~~~~~ 704 (1045)
|+.++.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 987653
No 174
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-38 Score=337.29 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=180.8
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++.+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4677877552 3469999999999999999999999999999999999987 568999999987643
Q ss_pred c-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 545 K-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 545 ~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
. ..++.++|++|++.+++.+|+.||+.+....+. ......++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 234578999999988888999999987654331 223334456788999999988788776 4799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|+ +|++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999999999999999999999999999875 899999999985 5678899999998 5899988864
No 175
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=340.77 Aligned_cols=217 Identities=21% Similarity=0.280 Sum_probs=178.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~--~~-~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+|+|+|..+ +. +++|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478899988652 2469999999999999999999999999999999999864 21 3589999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
+++.. ...++.++|++|+..+++.+|++||+.+...... ....++.+++++++++.+++.+ ..++.+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSNA-- 146 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--
Confidence 88632 1345678999999999999999999987643221 1123333456788899999854 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||++++|+
T Consensus 147 ---~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14256 147 ---MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY 221 (252)
T ss_pred ---CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999976 689999999986 5678899999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|+++..|+.+
T Consensus 222 -~G~i~~~~~~~ 232 (252)
T PRK14256 222 -MGDLVECGETK 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 58999998753
No 176
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-38 Score=343.65 Aligned_cols=218 Identities=21% Similarity=0.281 Sum_probs=178.9
Q ss_pred cceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEE
Q 043954 460 EQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIQGEIR 536 (1045)
Q Consensus 460 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~--~-~~~~G~I~ 536 (1045)
....++++|+++.+. ++++|+|+|++|++||+++|+||||||||||+|+|+|..+ + .|.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345688999998652 2469999999999999999999999999999999999864 1 14689999
Q ss_pred ECCeeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccc
Q 043954 537 VGGYPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSL 607 (1045)
Q Consensus 537 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 607 (1045)
++|+++.. ...++.++|++|+..+++ .|++||+.+...... ..+.++.+++++++++.+++.+ ..++.
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99988632 133567999999987777 899999987653221 1233444556888999998743 33444
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEE
Q 043954 608 VGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 608 vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
+ ..||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|+|++||++. ++.+.+|+++
T Consensus 154 ~-----~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 G-----YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred C-----CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEE
Confidence 3 47999999999999999999999999999999999999999999999864 789999999986 5678899999
Q ss_pred EEecCcEEEEecCC
Q 043954 688 LMKAGGRIIYSGML 701 (1045)
Q Consensus 688 ~l~~gG~~~~~G~~ 701 (1045)
+|+ +|+++..|+.
T Consensus 227 ~l~-~G~i~~~g~~ 239 (260)
T PRK10744 227 FMY-LGELIEFGNT 239 (260)
T ss_pred EEE-CCEEEEeCCH
Confidence 998 5899999875
No 177
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.6e-38 Score=339.35 Aligned_cols=213 Identities=26% Similarity=0.404 Sum_probs=181.3
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4677777552 3469999999999999999999999999999999999887 578999999988643
Q ss_pred c-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 545 K-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 545 ~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
. ..++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+++.+..++..+ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHH
Confidence 2 23456899999998888999999998765432 12233344567899999999877777763 799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
++|||+|+++|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ +|++++.|+.+
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 216 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSPD 216 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCHH
Confidence 99999999999999999999999999999999999998876 899999999986 5678899999998 58999998753
No 178
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-38 Score=341.95 Aligned_cols=215 Identities=23% Similarity=0.306 Sum_probs=175.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCC---CCCCeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR---KTGGIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~---~~~~~~~G~I~~~g 539 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|. .++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467888888652 34699999999999999999999999999999999996 23222589999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI----KDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+. .++.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 144 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESA-- 144 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc--
Confidence 88642 123567899999988776 699999987654331 11223334567889999998643 34333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.||++++|+
T Consensus 145 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14245 145 ---FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY 219 (250)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 4799999999999999999999999999999999999999999999985 4799999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|++++.|++
T Consensus 220 -~G~~~~~~~~ 229 (250)
T PRK14245 220 -MGEMVEYDDT 229 (250)
T ss_pred -CCEEEEECCH
Confidence 5899999975
No 179
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5e-38 Score=338.62 Aligned_cols=198 Identities=23% Similarity=0.344 Sum_probs=169.2
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHH
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVK 571 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 571 (1045)
|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++..... ..+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999987 579999999988643221 2489999999999999999998
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 043954 572 FSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAA 651 (1045)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~ 651 (1045)
+...... .....++.+++++++++.+++.+..++.++ +||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 123344445568899999999887777763 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 652 AIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 652 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
..+.+.|++++++ |+|+|++||++. ++.+.||++++|+ +|+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe-CCcEecccCc
Confidence 9999999998775 899999999986 5778899999998 5899988754
No 180
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-38 Score=345.29 Aligned_cols=216 Identities=24% Similarity=0.327 Sum_probs=181.4
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4789999986531 12459999999999999999999999999999999999987 5799999999886
Q ss_pred Cc---ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQ---KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
.. ...++.++|++|++. +++..|+++|+.+..... ....++..+.++++++.+++.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567899999874 677889999998864322 1233444556788999999988777766 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++. .+|++++|+ +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 454 599999998 599999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+++
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99864
No 181
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=341.65 Aligned_cols=215 Identities=27% Similarity=0.355 Sum_probs=176.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC---CCeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~---~~~~~G~I~~~g 539 (1045)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 478999998652 2469999999999999999999999999999999999753 124689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI----KDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++ .||+||+.+....+. ....+..+++++++++.+++.+. .++.+
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 147 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESA-- 147 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--
Confidence 87642 123567899999988777 599999988654321 11223334567888999888542 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|+
T Consensus 148 ---~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14242 148 ---LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFY 222 (253)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999954 799999999986 5678899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|+++..|++
T Consensus 223 -~G~i~~~g~~ 232 (253)
T PRK14242 223 -MGKLIEVGPT 232 (253)
T ss_pred -CCEEEEeCCH
Confidence 5899998875
No 182
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-38 Score=347.50 Aligned_cols=217 Identities=25% Similarity=0.343 Sum_probs=182.7
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEE---EEEEEC
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQ---GEIRVG 538 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~---G~I~~~ 538 (1045)
..++++|+++.++. .++++|+|+|++|++||+++|+||||||||||+++|+|..+ |.+ |+|.++
T Consensus 4 ~~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~--p~~g~~G~i~i~ 70 (282)
T PRK13640 4 NIVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL--PDDNPNSKITVD 70 (282)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCCCCCcEEEEC
Confidence 35789999986531 12469999999999999999999999999999999999886 344 999999
Q ss_pred CeeCCc---ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 043954 539 GYPKVQ---KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 539 g~~~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 614 (1045)
|++... ...++.+||++|++. .++..||+||+.+..... ..+.++.+++++++++.++|.+..++.+ +
T Consensus 71 g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (282)
T PRK13640 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----A 142 (282)
T ss_pred CEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----c
Confidence 998643 233467899999864 677889999998764322 2345555667889999999988778776 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..||++++|+ +|
T Consensus 143 ~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~-~G 219 (282)
T PRK13640 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLD-DG 219 (282)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999875 899999999986 34 6799999998 59
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
++++.|+++
T Consensus 220 ~i~~~g~~~ 228 (282)
T PRK13640 220 KLLAQGSPV 228 (282)
T ss_pred EEEEeCCHH
Confidence 999999763
No 183
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-38 Score=389.74 Aligned_cols=247 Identities=26% Similarity=0.369 Sum_probs=194.5
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.+..+.+++.+... . . .+.....++++|++|+++. .++++|+|+
T Consensus 296 ~~~~~~~~~~ri~~~l~~~~~~~~~~---~-~---------~~~~~~~i~~~~v~f~y~~-----------~~~~il~~i 351 (571)
T TIGR02203 296 PMQRGLAAAESLFTLLDSPPEKDTGT---R-A---------IERARGDVEFRNVTFRYPG-----------RDRPALDSI 351 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC---C-C---------CCCCCCeEEEEEEEEEcCC-----------CCCccccCe
Confidence 45566778888887775543221110 0 0 0001235889999997642 235699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||.++|+|+||||||||+|+|+|..+ |.+|+|.+||.++.+ ...++.++|++|++.+++ .|++|||.+
T Consensus 352 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~ 428 (571)
T TIGR02203 352 SLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIANNIAY 428 (571)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc-ccHHHHHhc
Confidence 99999999999999999999999999999988 578999999988643 456778999999887664 599999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. +++.+++ .++++++.++ +++..||.+|+.| +.||||||||++||||++++|+|++||||||+
T Consensus 429 ~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~g-~~LSgGqrQRiaLARall~~~~illLDEpts~ 499 (571)
T TIGR02203 429 GR----TEQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATSA 499 (571)
T ss_pred CC----CCCCCHH----HHHHHHHHcChHHHHHhCcCcccceecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 53 1123333 2445555544 4567899999876 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++.+++.|+++. +++|+|++||+++ ..+.||++++|+ +|+++..|+.+
T Consensus 500 LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~-~g~i~~~g~~~ 552 (571)
T TIGR02203 500 LDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMD-DGRIVERGTHN 552 (571)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEe-CCEEEeeCCHH
Confidence 99999999999999874 4799999999975 678999999998 58999999864
No 184
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.3e-39 Score=386.68 Aligned_cols=225 Identities=25% Similarity=0.417 Sum_probs=175.0
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.+.... +. ... .+.....++++||+|+|+. ++++|+|+
T Consensus 296 ~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~---~~~-----~~~~~~~I~~~~vsf~Y~~------------~~~vL~~i 354 (529)
T TIGR02868 296 ALTRVRAAAERIEEVTGAKGPRPEGVV-PA---AGA-----LGLGKPTLELRDLSFGYPG------------SPPVLDGV 354 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCCC-CC---Ccc-----cCCCCceEEEEEEEEecCC------------CCceeecc
Confidence 455677788999888765443211100 00 000 0111235899999998742 23599999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC--cccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV--QKTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~--~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
|+++++||.+||+||||||||||+|+|+|.++ |.+|+|.+||.++. ...+++.++||+|++.+++ .|++|||.++
T Consensus 355 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g 431 (529)
T TIGR02868 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLG 431 (529)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhHHHHHHhheEEEccCccccc-ccHHHHHhcc
Confidence 99999999999999999999999999999988 67999999998865 3456678999999888775 4999999885
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
. ++.++++ ++++++..+ +++..||.+|+.|. +||||||||++|||||+++|+||+||||||+|
T Consensus 432 ~-----~~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~G~-~LSGGQrQRiaiARall~~~~iliLDE~TSaL 501 (529)
T TIGR02868 432 R-----PDATDEE----LWAALERVGLADWLRSLPDGLDTVLGEGGA-RLSGGERQRLALARALLADAPILLLDEPTEHL 501 (529)
T ss_pred C-----CCCCHHH----HHHHHHHcCCHHHHHhCcccccchhccccC-cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 2 1223332 344444443 46778999998775 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQP 675 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 675 (1045)
|+++++.|.+.|+++ .+++|+|+++|++
T Consensus 502 D~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 502 DAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred CHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 999999999999986 3589999999984
No 185
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=352.27 Aligned_cols=223 Identities=14% Similarity=0.210 Sum_probs=179.9
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC--CeEEEEEEECCee
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIQGEIRVGGYP 541 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~--~~~~G~I~~~g~~ 541 (1045)
++++|+++.+... .+.+.+|+|||++|++||+++|+|+||||||||+++|+|+.++ .+.+|+|.++|++
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 6788999877431 1235699999999999999999999999999999999998752 2468999999998
Q ss_pred CCcc---c----ccccceEeecCCc--cCCCCCHHHHHHHHhhhcCC-CC--CCHHHHHHHHHHHHHHcCCCcc---ccc
Q 043954 542 KVQK---T----FARISGYCEQTDI--HSPQITVEESVKFSAWLRLP-PE--IDSETKARFVEEVIETIELDDI---KDS 606 (1045)
Q Consensus 542 ~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~-~~--~~~~~~~~~v~~~l~~l~L~~~---~~~ 606 (1045)
+... . +++.++||+|++. +.+.+||.+++......... .. ....+.++++.++++.+||.+. .++
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 6421 1 1246899999875 67889999999764221100 00 1122345668899999999753 344
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcce
Q 043954 607 LVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDE 685 (1045)
Q Consensus 607 ~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 685 (1045)
.. ++|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|+|++||++. .+.+.+|+
T Consensus 155 ~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 FP-----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred Cc-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 44 479999999999999999999999999999999999999999999999875 899999999986 56788999
Q ss_pred EEEEecCcEEEEecCCC
Q 043954 686 LLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 686 v~~l~~gG~~~~~G~~~ 702 (1045)
+++|. +|++++.|+.+
T Consensus 229 i~vm~-~G~ive~g~~~ 244 (330)
T PRK15093 229 INVLY-CGQTVETAPSK 244 (330)
T ss_pred EEEEE-CCEEEEECCHH
Confidence 99998 59999999864
No 186
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-38 Score=347.33 Aligned_cols=220 Identities=22% Similarity=0.321 Sum_probs=182.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|++++++... +..++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 478999998764210 0013569999999999999999999999999999999999987 5799999999886
Q ss_pred Cc----ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 543 VQ----KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ...++.++|++|++. .+...||.||+.|..... .....+.+++++++++.+||.+..++.++ .||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCC
Confidence 43 234567899999863 233569999998865322 22344455678899999999988888774 799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++. .||++++|+ +|+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~-~G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMD-SGKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 999999999986 344 599999998 58999
Q ss_pred EecCCC
Q 043954 697 YSGMLG 702 (1045)
Q Consensus 697 ~~G~~~ 702 (1045)
..|+++
T Consensus 224 ~~g~~~ 229 (280)
T PRK13633 224 MEGTPK 229 (280)
T ss_pred EecCHH
Confidence 999864
No 187
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-38 Score=347.84 Aligned_cols=220 Identities=21% Similarity=0.330 Sum_probs=178.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|++++++... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 478999998763210 001359999999999999999999999999999999999987 5789999999875
Q ss_pred Cc--------ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 043954 543 VQ--------KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPG 612 (1045)
Q Consensus 543 ~~--------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 612 (1045)
.. ...++.++|++|++. .+...|++||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 31 223557899999863 233469999998864322 123344445678899999994 5666665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|+|++||+++ ++.+.||++++|+
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~- 225 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH- 225 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 479999999999999999999999999999999999999999999998764 899999999986 5778999999998
Q ss_pred CcEEEEecCCC
Q 043954 692 GGRIIYSGMLG 702 (1045)
Q Consensus 692 gG~~~~~G~~~ 702 (1045)
+|++++.|+.+
T Consensus 226 ~G~i~~~g~~~ 236 (289)
T PRK13645 226 EGKVISIGSPF 236 (289)
T ss_pred CCEEEEeCCHH
Confidence 58999988753
No 188
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=337.08 Aligned_cols=212 Identities=23% Similarity=0.346 Sum_probs=177.5
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++ ..|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++..
T Consensus 2 l~~~~l~~~~~-------------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 56888888653 11 238999999999999999999999999999999987 57899999998764
Q ss_pred cc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 544 QK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 544 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
.. ..++.++|++|++.+++.+|+.||+.+...... ... +..+++++++++.+|+++..++.++ .|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHH
Confidence 32 123568999999999999999999987532110 111 2334568899999999888888774 79999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|++|||||+.+|++++|||||+|||+.+++.+.+.|++++++ |+|+|++||++. ++.+.+|++++|+ +|++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVA-DGRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 5678899999998 5899999875
Q ss_pred C
Q 043954 702 G 702 (1045)
Q Consensus 702 ~ 702 (1045)
+
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 4
No 189
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-38 Score=339.54 Aligned_cols=209 Identities=24% Similarity=0.348 Sum_probs=175.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367888888652 3469999999999999999999999999999999999887 5799999999875
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 618 (1045)
.. ...++.++|++|++.+++ .|++||+.+....+ . . ..++++++++.+++. +..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDV-----KNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCc-----ccCCH
Confidence 42 234567899999987776 69999998753221 1 1 124577889999996 4556554 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ +|+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN-KGILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999874 899999999986 5678899999998 589998
Q ss_pred ecCC
Q 043954 698 SGML 701 (1045)
Q Consensus 698 ~G~~ 701 (1045)
.|++
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
No 190
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=341.41 Aligned_cols=221 Identities=22% Similarity=0.259 Sum_probs=179.4
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEE
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIQGEIRV 537 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~---~~~~G~I~~ 537 (1045)
...++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (267)
T PRK14237 18 EIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84 (267)
T ss_pred CeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence 44688999998652 35699999999999999999999999999999999998753 147899999
Q ss_pred CCeeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 043954 538 GGYPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPG 612 (1045)
Q Consensus 538 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 612 (1045)
+|+++.. ...++.++|++|++.+++ .||+||+.++.... ....+++.+++++++++.+++.+..+.....+
T Consensus 85 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~- 160 (267)
T PRK14237 85 RGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHKS- 160 (267)
T ss_pred CCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCC-
Confidence 9988632 123567899999987777 69999998864322 11233344566788899998854222222211
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ ++.|+|++||+++ ++.+.||++++|+ +
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~-~ 237 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFY-L 237 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEE-C
Confidence 24799999999999999999999999999999999999999999999985 4799999999986 5778999999998 5
Q ss_pred cEEEEecCC
Q 043954 693 GRIIYSGML 701 (1045)
Q Consensus 693 G~~~~~G~~ 701 (1045)
|++++.|+.
T Consensus 238 G~i~~~g~~ 246 (267)
T PRK14237 238 GDLIEYDKT 246 (267)
T ss_pred CEEEEeCCH
Confidence 999999985
No 191
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7e-38 Score=332.21 Aligned_cols=189 Identities=23% Similarity=0.367 Sum_probs=163.2
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC---cc----cccccceEeecCCccC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV---QK----TFARISGYCEQTDIHS 561 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~---~~----~~~~~~~~v~q~~~~~ 561 (1045)
+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++. .. ..++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 569999999999999999999999999999999999987 57999999998742 11 2345789999999988
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 043954 562 PQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDE 641 (1045)
Q Consensus 562 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDE 641 (1045)
+.+|++||+.+..... ....++..++++++++.+++.+..++.+ ++||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8999999999865432 1233444566889999999988878776 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 642 PTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 642 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
||+|||+.++..+.+.|+++.++|+|+|++||++. ..+.||++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999975 45789999875
No 192
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=343.04 Aligned_cols=216 Identities=21% Similarity=0.332 Sum_probs=178.5
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeE--------EEEE
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII--------QGEI 535 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~--------~G~I 535 (1045)
++++|+++++. ++.+|+|+|++|++||+++|+||||||||||+|+|+|..+ +. +|+|
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~--p~~~~~~~~~~G~i 66 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT--GGGAPRGARVTGDV 66 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CcccccccCCceEE
Confidence 56788887652 3569999999999999999999999999999999999876 34 8999
Q ss_pred EECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 043954 536 RVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP--PEIDSETKARFVEEVIETIELDDIKDSLVGI 610 (1045)
Q Consensus 536 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~ 610 (1045)
.++|.+... ...++.++|++|++..++.+|++||+.+....... .... ++.++.++++++.+++.+..++.+
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-- 143 (272)
T PRK13547 67 TLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALT-HRDGEIAWQALALAGATALVGRDV-- 143 (272)
T ss_pred EECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCC-HHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 999987642 23345689999987766679999999875321100 1112 223456788999999987777765
Q ss_pred CCCCCCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHH
Q 043954 611 PGQSGLSTEQRKRLTIAVELV---------SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVF 680 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~ 680 (1045)
..|||||||||+|||||+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.
T Consensus 144 ---~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~ 219 (272)
T PRK13547 144 ---TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAA 219 (272)
T ss_pred ---ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHH
Confidence 479999999999999999 599999999999999999999999999999876 899999999986 567
Q ss_pred HhcceEEEEecCcEEEEecCCC
Q 043954 681 EAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 681 ~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
+.||++++|+ +|++++.|+.+
T Consensus 220 ~~~d~i~~l~-~G~i~~~g~~~ 240 (272)
T PRK13547 220 RHADRIAMLA-DGAIVAHGAPA 240 (272)
T ss_pred HhCCEEEEEE-CCeEEEecCHH
Confidence 8899999998 58999999864
No 193
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=338.81 Aligned_cols=215 Identities=21% Similarity=0.292 Sum_probs=175.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIQGEIRVGGYPK 542 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~-~~~~G~I~~~g~~~ 542 (1045)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .|.+|+|.++|+++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 46788887652 24699999999999999999999999999999999998642 25789999999986
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCCCCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI----KDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~~~~~ 615 (1045)
.. ...++.++|++|++.+++ .|++||+.+....+.... .....+++++++++.+++.+. .+... +.
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~ 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNA-----LA 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCCc-----cc
Confidence 43 234567899999988876 699999988654321100 122334557889999999532 33332 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+.+|++++|+ +|++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i 219 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999865 899999999986 5778899999998 5999
Q ss_pred EEecCC
Q 043954 696 IYSGML 701 (1045)
Q Consensus 696 ~~~G~~ 701 (1045)
++.|+.
T Consensus 220 ~~~g~~ 225 (246)
T PRK14269 220 IEFGES 225 (246)
T ss_pred EEECCH
Confidence 999875
No 194
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.3e-38 Score=385.38 Aligned_cols=246 Identities=21% Similarity=0.343 Sum_probs=193.2
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
.++++..+.+|+.++.+.+++.+.. +. . .+.....++++|++++++. +++.+|+|+
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~~---~~-----~-----~~~~~~~I~~~~v~~~y~~-----------~~~~~l~~i 334 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKDG---SE-----P-----VPEGRGELDVNIRQFTYPQ-----------TDHPALENV 334 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCC---CC-----C-----CCCCCCcEEEEEEEEECCC-----------CCCccccCe
Confidence 4556777889998877654322110 00 0 0011225789999987632 235699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||.++|+||||||||||+|+|+|.++ |.+|+|.+||++... ..+++.++|++|++.+++ .|++||+.+
T Consensus 335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~ 411 (569)
T PRK10789 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIAL 411 (569)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhc
Confidence 99999999999999999999999999999987 679999999998643 345678999999988776 599999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETI-------ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. +..++++ ++++++.. ++++..|+.+|+.|. +||||||||++|||||+++|++++||||||+
T Consensus 412 ~~-----~~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~-~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 412 GR-----PDATQQE----IEHVARLASVHDDILRLPQGYDTEVGERGV-MLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred CC-----CCCCHHH----HHHHHHHcCCHHHHHhCcCcccceecCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 52 1223332 33334433 355678999988764 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++.+.+.|+++. +|+|+|++||+++ ..+.+|++++|+ +|+++..|+.+
T Consensus 482 LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~-~G~i~~~g~~~ 534 (569)
T PRK10789 482 VDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ-HGHIAQRGNHD 534 (569)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe-CCEEEEecCHH
Confidence 99999999999999975 5899999999985 567899999998 59999999863
No 195
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=331.59 Aligned_cols=191 Identities=24% Similarity=0.389 Sum_probs=164.8
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccccceEeecCCccCCCCCH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-------KTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
|+|+++++ |+++|+||||||||||+++|+|..+ |.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999987 579999999987531 1234568999999988889999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
+||+.+..... ..+..+++++++++.+++.+..++.+ ..||||||||++|||||+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 22333456888999999987777765 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 647 DARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|+.+++.+.+.|++++++ |+|+|++||++. ++.+.+|++++|+ +|+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999876 899999999976 5678899999998 58988765
No 196
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=341.31 Aligned_cols=216 Identities=24% Similarity=0.298 Sum_probs=177.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~---~~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+|+|+|..++ .|.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 578999998652 34699999999999999999999999999999999998753 13789999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++. ||.||+.+....+.. ....++.+++++++++.+++.+ ..++.+
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 161 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPG-- 161 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCc--
Confidence 88642 1235668999999887774 999999986543211 1122333456788999999964 234443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.||++++|+
T Consensus 162 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 162 ---TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999865 789999999986 5678899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|+++..|+.
T Consensus 237 -~G~i~~~g~~ 246 (267)
T PRK14235 237 -LGNLVEVGDT 246 (267)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
No 197
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-38 Score=306.67 Aligned_cols=206 Identities=22% Similarity=0.307 Sum_probs=176.6
Q ss_pred cccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------------c---cccc
Q 043954 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-------------K---TFAR 549 (1045)
Q Consensus 486 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-------------~---~~~~ 549 (1045)
++...+|++||++.+.|+++.|+|.|||||||+|+||.=+.. |..|.|.+||+.+.. + ..|.
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 356789999999999999999999999999999999998776 679999999986321 1 1234
Q ss_pred cceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH
Q 043954 550 ISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVE 629 (1045)
Q Consensus 550 ~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~a 629 (1045)
..++|+|+.++...+||.||+.-+-. .. ...++.+..++++..++.+|+.+..|... ..|||||+||++||||
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARa 166 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARA 166 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHH
Confidence 56999999999999999999975421 11 13456777788999999999998888665 3699999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 630 LVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 630 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||... ..-+...+++.|+ .|.+-++|+++
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh-~G~iEE~G~P~ 237 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLH-QGKIEEEGPPE 237 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEee-cceecccCChH
Confidence 99999999999999999999999999999999999999999999865 3446678999998 59999999985
No 198
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=343.31 Aligned_cols=216 Identities=21% Similarity=0.277 Sum_probs=176.0
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIQGEIRVG 538 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~---~~~~G~I~~~ 538 (1045)
..++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .|++|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4588999998652 34699999999999999999999999999999999998652 1468999999
Q ss_pred CeeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 043954 539 GYPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVG 609 (1045)
Q Consensus 539 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 609 (1045)
|.++.. ...++.++|++|++.+++ .||+||+.+....+. ... +.++.++++++.+++.. ..++.+
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~- 152 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNESG- 152 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCCc-
Confidence 987531 234556899999988887 499999988754321 112 22345677888887642 344443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 610 IPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 610 ~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||++++|
T Consensus 153 ----~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 153 ----YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 47999999999999999999999999999999999999999999999854 799999999986 678899999999
Q ss_pred ec----------CcEEEEecCCC
Q 043954 690 KA----------GGRIIYSGMLG 702 (1045)
Q Consensus 690 ~~----------gG~~~~~G~~~ 702 (1045)
++ .|++++.|+++
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred eccccccccccccceEEEeCCHH
Confidence 84 26789988763
No 199
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1e-37 Score=356.21 Aligned_cols=195 Identities=24% Similarity=0.379 Sum_probs=170.8
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccccceEeecCCccCCCCCH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-------KTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 9999999999999999999999999999999987 579999999987632 1235678999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
+||+.++.... ...+.+++++++++.++|.+..++.+ ++||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12334456889999999998888876 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 647 DARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|+ +|+++..|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLE-DGRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 999999999999999876 899999999986 5778899999998 58999998753
No 200
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-37 Score=334.99 Aligned_cols=200 Identities=25% Similarity=0.389 Sum_probs=173.3
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccccceEeecCCccCCCCCHHHH
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-TFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
+|+|+|++|++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999887 5789999999886431 234578999999988989999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDAR 649 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~ 649 (1045)
+.+..... .....+..+.++++++.++|.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1233444456788999999988888776 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 650 AAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 650 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
+++.+.+.|++++++ |+|+|++||++. ++.+.||++++|+ +|++++.|+.+
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 215 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIML-NGKLIQVGKPE 215 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999998765 899999999985 5678899999998 58999988753
No 201
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=355.50 Aligned_cols=191 Identities=21% Similarity=0.370 Sum_probs=169.0
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccccceEeecCCccCCCCCH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-------KTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++... ...++.++|++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999987 579999999987532 1235678999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
+||+.++.. ...+++++++++.++|.+..++.+ +.|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345788999999988888876 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 647 DARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|+ +|+++..|+++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLE-QGKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEe-CCEEEEecCHH
Confidence 999999999999999876 899999999986 6788999999998 59999999864
No 202
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.9e-37 Score=341.64 Aligned_cols=224 Identities=18% Similarity=0.290 Sum_probs=181.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++..+.. ....+.+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3789999987742100 000112469999999999999999999999999999999999987 5799999999886
Q ss_pred Ccc---cccccceEeecCCc--cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCC
Q 043954 543 VQK---TFARISGYCEQTDI--HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGL 616 (1045)
Q Consensus 543 ~~~---~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~L 616 (1045)
... ..++.++|++|++. +.+.+|+.|++.+....+. ....++..+.++++++.+++. +..++.+ ..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhc
Confidence 421 22346899999864 5678899999987654321 123334445688999999994 5566655 379
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
|||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|+ +|++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999875 899999999986 5777899999998 5899
Q ss_pred EEecCC
Q 043954 696 IYSGML 701 (1045)
Q Consensus 696 ~~~G~~ 701 (1045)
+..|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 988875
No 203
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-37 Score=325.17 Aligned_cols=190 Identities=56% Similarity=0.934 Sum_probs=161.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++.. .+++++|+|+|+++++||+++|+||||||||||+|+|+|.....+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 46788998876421 012569999999999999999999999999999999999753235799999999886
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 5 33456789999998889999999999864210 0 49999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++.++.+.||++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998644678899999998438998865
No 204
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=340.22 Aligned_cols=216 Identities=21% Similarity=0.294 Sum_probs=177.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~--~-~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 578999998652 24699999999999999999999999999999999998652 1 2589999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++. ||+||+.+...... ....++.+++++++++.+++.+ ..++.+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~-- 153 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA-- 153 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc--
Confidence 98632 1334668999999888775 99999987643321 1123344456788899888853 234443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||++++|+
T Consensus 154 ---~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 154 ---LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999865 799999999986 5778899999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|+++..|+++
T Consensus 229 -~G~i~~~g~~~ 239 (259)
T PRK14274 229 -MGELVECNDTN 239 (259)
T ss_pred -CCEEEEECCHH
Confidence 59999999753
No 205
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=343.77 Aligned_cols=217 Identities=23% Similarity=0.335 Sum_probs=181.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47899999876310 12359999999999999999999999999999999999987 6799999999886
Q ss_pred Cc---ccccccceEeecCCc-cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQ---KTFARISGYCEQTDI-HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
.. ...++.++|++|++. .++..||.||+.+..... ....++..++++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567899999863 577789999998764322 1234444566889999999988777765 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++ ..+|++++|+ +|+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~-~G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMK-AGEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999876 999999999986 34 4699999998 589999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 98753
No 206
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=348.34 Aligned_cols=221 Identities=22% Similarity=0.307 Sum_probs=181.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~---~~~~G~I~~~g 539 (1045)
.++++|+++.+.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|..+. .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5789999987641 234699999999999999999999999999999999998642 24689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCCCC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEID-SETKARFVEEVIETIELDDIKDSLVGIPGQ 613 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 613 (1045)
+++.. ...++.++|++|++.++. .|++||+.|+.... ... .+..++.++++++.++|.+..++.+++.+
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~- 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAG- 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCc-
Confidence 98742 234567999999988774 79999999864321 122 22233456788888888655555566554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++||++. .+.+.||++++|+ +|
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~-~G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY-QG 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 47999999999999999999999999999999999999999999999876 699999999986 4667799999998 59
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
++++.|++.
T Consensus 301 ~i~e~g~~~ 309 (329)
T PRK14257 301 WIEEAGETK 309 (329)
T ss_pred EEEEeCCHH
Confidence 999999864
No 207
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.6e-38 Score=382.50 Aligned_cols=213 Identities=26% Similarity=0.355 Sum_probs=175.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|++|.++. ++++|+|+|+++++||.++|+||||||||||+++|+|.++ |.+|+|.+||.+.
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEh
Confidence 5889999997631 2458999999999999999999999999999999999987 6799999999986
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHH-----HHHHHcCCCccccccccCCCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVE-----EVIETIELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~-----~~l~~l~L~~~~~~~vg~~~~~ 614 (1045)
.. ...++.++|++|++.+++ .|++||+.++. + ..++++..+..+ +.+. .+++..|+.+|+.+.
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~~~- 470 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGERGN- 470 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCCCC-
Confidence 43 346678999999887765 69999998753 1 223333222111 1222 355667888887764
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
+||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|+ +|+
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~-~G~ 546 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLD-QGR 546 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEE-CCE
Confidence 799999999999999999999999999999999999999999999874 5899999999985 457899999998 589
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
+++.|+.+
T Consensus 547 i~~~g~~~ 554 (585)
T TIGR01192 547 LIEKGSFQ 554 (585)
T ss_pred EEEECCHH
Confidence 99999864
No 208
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2e-37 Score=331.91 Aligned_cols=211 Identities=25% Similarity=0.432 Sum_probs=177.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+... .+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5678888865310 012569999999999999999999999999999999999887 57999999998763
Q ss_pred cc------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 544 QK------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++.+++++++++.+++.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 235679999999988888999999998654321 1234445567889999999987777776 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++||+++ ..+.||++++|+ +|++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHME-DGKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999986 4899999999975 568999999997 4765
No 209
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=371.64 Aligned_cols=220 Identities=25% Similarity=0.330 Sum_probs=186.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++. ++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 367889988652 3569999999999999999999999999999999999987 5799999999876
Q ss_pred Ccc----cccccceEeecCCccCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 543 VQK----TFARISGYCEQTDIHSPQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
... ..++.++|++|++.+++.+||+||+.++...+.. ...+.++.+++++++++.+|+.+..++.++ .||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCC
Confidence 421 1235689999999899999999999886432210 112233445568899999999988888774 799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|+ +|+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~-~G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR-DGQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEE
Confidence 99999999999999999999999999999999999999999999878999999999986 5778999999998 589999
Q ss_pred ecCCCcc
Q 043954 698 SGMLGRH 704 (1045)
Q Consensus 698 ~G~~~~~ 704 (1045)
.|+.++.
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9987653
No 210
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.2e-37 Score=323.31 Aligned_cols=190 Identities=48% Similarity=0.852 Sum_probs=162.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCC--CCCeEEEEEEECCe
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK--TGGIIQGEIRVGGY 540 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~--~~~~~~G~I~~~g~ 540 (1045)
.++++|+++.++... ...++++|+|+|+++++||+++|+||||||||||+|+|+|.. + +.+|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 478899998764210 001256999999999999999999999999999999999988 6 67999999999
Q ss_pred eCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 541 PKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 541 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
+......++.++|++|++.+++.+|++||+.+.... . .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~----------------------~---------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL----------------------R---------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh----------------------c---------------cCCHHH
Confidence 875434556789999998888999999999764210 0 399999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|+++|++..++.+.+|++++|+ +|++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~-~G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLS-QGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEe-CCEEEecC
Confidence 9999999999999999999999999999999999999999987799999999998645778899999998 58988754
No 211
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=336.69 Aligned_cols=216 Identities=24% Similarity=0.294 Sum_probs=175.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCe---EEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~---~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+..| .+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 467899988652 3469999999999999999999999999999999999743112 589999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
+++.. ...++.++|++|+..+++ .||+||+.+....+. ....+..++.++++++.+++.+ ..++.+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA-- 146 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc--
Confidence 87632 123567899999988776 899999988653321 1122333456778888888743 234443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.||++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 147 ---LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|++++.|+.+
T Consensus 222 -~G~i~~~g~~~ 232 (252)
T PRK14239 222 -DGDLIEYNDTK 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 58999998753
No 212
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-37 Score=335.50 Aligned_cols=215 Identities=25% Similarity=0.333 Sum_probs=175.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367889988652 246999999999999999999999999999999999975421 2589999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++ .|++||+.+....+. ....++.++.++++++.+++.+ ..++.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 144 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA-- 144 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC--
Confidence 88642 123566899999988777 899999998653321 1123334556788888888743 334443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.+|++++|+
T Consensus 145 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 145 ---LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred ---CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999854 799999999975 5778899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|+++..|+.
T Consensus 220 -~G~i~~~~~~ 229 (250)
T PRK14240 220 -NGEIVEFGDT 229 (250)
T ss_pred -CCEEEEeCCH
Confidence 5899998875
No 213
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=337.16 Aligned_cols=216 Identities=24% Similarity=0.276 Sum_probs=176.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467888887652 246999999999999999999999999999999999986531 2689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
.++.. ...++.++|++|++.+++ +|++||+.+...... ....++.+++++++++.+++.+ ..++.+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 145 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSA-- 145 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc--
Confidence 98642 123566899999988877 899999988654321 1123334456788899998743 234433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||++++|+
T Consensus 146 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 146 ---LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 47999999999999999999999999999999999999999999999876 699999999986 5778899999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|++++.|+.+
T Consensus 221 -~G~i~~~~~~~ 231 (251)
T PRK14270 221 -MGDLIEFNKTE 231 (251)
T ss_pred -CCeEEEeCCHH
Confidence 58999998763
No 214
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-37 Score=335.08 Aligned_cols=217 Identities=24% Similarity=0.296 Sum_probs=176.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCe---EEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~---~~G~I~~~g 539 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477889988652 3469999999999999999999999999999999999876422 479999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 610 (1045)
.++.. ...++.++|++|++.+++.+|+.||+.+...... ....++..+.+++.++.+++. +..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 146 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPA-- 146 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc--
Confidence 87642 1335568999999999999999999987643221 112333345566777777653 3345554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 147 ---TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999865 799999999986 5777899999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|++++.|+++
T Consensus 222 -~G~i~~~~~~~ 232 (252)
T PRK14272 222 -VGDLVEHGPTD 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 58999998753
No 215
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=372.00 Aligned_cols=219 Identities=25% Similarity=0.301 Sum_probs=185.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 478899988652 3569999999999999999999999999999999999987 5789999999886
Q ss_pred Cccc----ccccceEeecCCccCCCCCHHHHHHHHhhhc----CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 043954 543 VQKT----FARISGYCEQTDIHSPQITVEESVKFSAWLR----LPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 543 ~~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 614 (1045)
.... .++.++|++|++.+++.+||+||+.++.... .....+.++.+++++++++.+||.+..++.++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA----- 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----
Confidence 4321 2346899999988899999999998753211 00011233445668899999999988888874
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|+ +|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DGS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999999888999999999976 5778899999998 589
Q ss_pred EEEecCCCc
Q 043954 695 IIYSGMLGR 703 (1045)
Q Consensus 695 ~~~~G~~~~ 703 (1045)
+++.|++++
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999998764
No 216
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=338.18 Aligned_cols=217 Identities=22% Similarity=0.306 Sum_probs=177.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC-e--EEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-I--IQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~-~--~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++. + ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 477899988652 246999999999999999999999999999999999987632 2 489999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++ .|++||+.+....+. ...+.+.++.++++++.+++. +..++.+
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 148 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSA-- 148 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCc--
Confidence 87632 123456899999988887 899999987654321 122333345677888888874 3344443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.||++++|+
T Consensus 149 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 149 ---LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 47999999999999999999999999999999999999999999999865 699999999986 6788999999997
Q ss_pred c----CcEEEEecCCC
Q 043954 691 A----GGRIIYSGMLG 702 (1045)
Q Consensus 691 ~----gG~~~~~G~~~ 702 (1045)
+ +|++++.|+++
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 48999999763
No 217
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2e-37 Score=355.75 Aligned_cols=227 Identities=24% Similarity=0.298 Sum_probs=188.3
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
.-++++|++..+..+..+. ....+...+++||||++++||++||+|+||||||||.|+|+|+.+ |.+|+|.++|.+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~ 354 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQD 354 (539)
T ss_pred ceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcc
Confidence 3578999998887543221 011234679999999999999999999999999999999999988 579999999977
Q ss_pred C--Cc---ccccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 043954 542 K--VQ---KTFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQ 613 (1045)
Q Consensus 542 ~--~~---~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 613 (1045)
. .. ...++.+-+++|++ .+.|.+||++++......... ...+++++++.++++.++|+. ..+++.
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP----- 427 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYP----- 427 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCc-----
Confidence 2 11 22345677888875 688999999999876554322 235666778999999999985 455554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
++||||||||++|||||+.+|++|++|||||+||+..+.+|+++|+++.++ |.|.|++|||.+ -+...|||+.+|. .
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~-~ 505 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMY-D 505 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEE-C
Confidence 589999999999999999999999999999999999999999999999877 999999999986 5778899999998 5
Q ss_pred cEEEEecCC
Q 043954 693 GRIIYSGML 701 (1045)
Q Consensus 693 G~~~~~G~~ 701 (1045)
|++|+.|+.
T Consensus 506 G~iVE~G~~ 514 (539)
T COG1123 506 GRIVEEGPT 514 (539)
T ss_pred CeEEEeCCH
Confidence 999999975
No 218
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.5e-37 Score=338.22 Aligned_cols=215 Identities=26% Similarity=0.337 Sum_probs=176.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP- 541 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~- 541 (1045)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478999998652 2469999999999999999999999999999999999887 578999999987
Q ss_pred ----CCcc---c----ccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 043954 542 ----KVQK---T----FARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSL 607 (1045)
Q Consensus 542 ----~~~~---~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 607 (1045)
+... . .++.++|++|+. .+.+.+|+.||+.+...... .....+.++.++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 234589999986 36677899999976432111 1122233456788999999963 55665
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceE
Q 043954 608 VGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDEL 686 (1045)
Q Consensus 608 vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v 686 (1045)
+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||++. .+.+.+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 5 479999999999999999999999999999999999999999999998765 899999999986 466789999
Q ss_pred EEEecCcEEEEecCC
Q 043954 687 LLMKAGGRIIYSGML 701 (1045)
Q Consensus 687 ~~l~~gG~~~~~G~~ 701 (1045)
++|+ +|++++.|++
T Consensus 223 ~~l~-~g~i~~~~~~ 236 (258)
T PRK11701 223 LVMK-QGRVVESGLT 236 (258)
T ss_pred EEEE-CCEEEEeCCH
Confidence 9998 5999999875
No 219
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-37 Score=335.02 Aligned_cols=215 Identities=25% Similarity=0.282 Sum_probs=175.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888888652 356999999999999999999999999999999999987632 3589999999
Q ss_pred eeCCc----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 043954 540 YPKVQ----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGIP 611 (1045)
Q Consensus 540 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 611 (1045)
.++.. ...++.++|++|++.+++ .||.||+.+...... ...++..++++++.++.+++.+ ..++.+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 143 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSHA--- 143 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcCc---
Confidence 87631 234567899999988887 899999987643221 1122333456777888888753 233333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||++++|+
T Consensus 144 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~- 218 (249)
T PRK14253 144 --FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFL- 218 (249)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEE-
Confidence 47999999999999999999999999999999999999999999999976 589999999986 5778899999998
Q ss_pred CcEEEEecCC
Q 043954 692 GGRIIYSGML 701 (1045)
Q Consensus 692 gG~~~~~G~~ 701 (1045)
+|+++..|+.
T Consensus 219 ~G~i~~~g~~ 228 (249)
T PRK14253 219 MGELVEHDDT 228 (249)
T ss_pred CCEEEEeCCH
Confidence 5899998875
No 220
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6.7e-38 Score=379.21 Aligned_cols=234 Identities=23% Similarity=0.375 Sum_probs=183.7
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.... .+ .. +.....++++|++|+++. +++++|+|+
T Consensus 286 ~~~~~~~~~~ri~~ll~~~~~~~~~-----~~-~~-------~~~~~~i~~~~v~f~y~~-----------~~~~il~~i 341 (529)
T TIGR02857 286 ARADGVAAAEALFAVLDAPRPLAGK-----AP-VT-------AAPAPSLEFSGLSVAYPG-----------RRAPALRPV 341 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCC-----cC-CC-------CCCCCeEEEEEEEEECCC-----------CCcccccce
Confidence 4566777888988877643211100 00 00 001125899999998742 234699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++++|||.++|+||||||||||+|+|+|.++ |.+|+|.+||.++.+ ..+++.++||+|++.+++ .|++||+.+
T Consensus 342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~ 418 (529)
T TIGR02857 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAENIRL 418 (529)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhc
Confidence 99999999999999999999999999999988 679999999998643 456778999999888775 699999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.. ..+++ .++++++..++ ++..||.+|+.|. .||||||||++|||||+++|++++||||||+
T Consensus 419 ~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~-~LSgGq~qri~laRal~~~~~ililDE~ts~ 488 (529)
T TIGR02857 419 ARP-----DASDA----EIRRALERAGLDEFVAALPQGLDTLIGEGGA-GLSGGQAQRLALARAFLRDAPLLLLDEPTAH 488 (529)
T ss_pred cCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhccccc-cCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 531 12222 24444554443 4567999998774 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
||+.+++.+.+.|+++. +++|+|+++|+++ ..+.||++++|
T Consensus 489 lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 489 LDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999999999999875 5899999999975 56889999875
No 221
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=334.98 Aligned_cols=219 Identities=21% Similarity=0.305 Sum_probs=174.5
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECCe
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIQGEIRVGGY 540 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~--~-~~~G~I~~~g~ 540 (1045)
-+++|+++.+. ++++|+|+||++++||+++|+||||||||||+|+|+|..++ . +.+|+|.++|+
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35778887652 34699999999999999999999999999999999998642 1 36899999998
Q ss_pred eCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 541 PKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 541 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
++.. ...++.++|++|++.+++. |++||+.+....+. .....++.++.++++++.+++.+...+..... ..+
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDS-AFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcC-hhh
Confidence 7532 1235678999999887775 99999988643321 11122333456788899999865221111111 147
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +|+|+|++||++. ++.+.||++++|+ +|++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~-~G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQ-SGRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 5678899999998 5899
Q ss_pred EEecCC
Q 043954 696 IYSGML 701 (1045)
Q Consensus 696 ~~~G~~ 701 (1045)
++.|++
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 998875
No 222
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4e-37 Score=330.05 Aligned_cols=192 Identities=26% Similarity=0.379 Sum_probs=162.0
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCH
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
+++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|++... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 45679999999999999999999999999999999999887 579999999986421 1112234567899
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
+||+.+..... ....++.++.++++++.+++.+..++.++ +||||||||++|||+|+.+|++++|||||+||
T Consensus 102 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99998865432 12334445567889999999888888774 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|+ +|++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 999999999999999877899999999975 5677899999998 58988765
No 223
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.7e-37 Score=331.84 Aligned_cols=211 Identities=20% Similarity=0.334 Sum_probs=173.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++++|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478899998652 3469999999999999999999999999999999999876 5799999999875
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 618 (1045)
.. ...++.++|++|++.+++ .|++||+.+....+.. .. .+++++++++.+++. ...++.+ +.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 42 224567899999988776 5999999875433211 11 124567899999996 4566665 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||++. ++ +.||++++|++++..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999986 34 57999999965555566
Q ss_pred ecCC
Q 043954 698 SGML 701 (1045)
Q Consensus 698 ~G~~ 701 (1045)
+|..
T Consensus 219 ~~~~ 222 (225)
T PRK10247 219 EARY 222 (225)
T ss_pred hhhh
Confidence 6643
No 224
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=295.36 Aligned_cols=216 Identities=25% Similarity=0.357 Sum_probs=184.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
+++++++++.| +..++|.||+++.+.||.+.++||||||||||++.|.=+.. |.+|+..+.|...
T Consensus 2 sirv~~in~~y-------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFY-------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEccccccc-------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 35677887754 45679999999999999999999999999999999987655 5789999988642
Q ss_pred C------c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 043954 543 V------Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQ 613 (1045)
Q Consensus 543 ~------~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 613 (1045)
+ + ...|+.+|+|+|+..+.|.+||.||+.-+ .++. ..+++++.+.++.++++++.|.+.+|+..
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-p~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p----- 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRV-LGLSKDQALARAEKLLKRLRLKPYADRYP----- 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-hHHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----
Confidence 1 1 24567899999999999999999999754 2332 24567777888999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
-.|||||+|||+|||||+.+|++|++||||++|||+-..++.+++|+++..|.|-+++||... -..+.+.+++.|+ +|
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme-~g 217 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYME-NG 217 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeee-cC
Confidence 369999999999999999999999999999999999999999999999999999999999865 3456789999998 59
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
++++.|+.+
T Consensus 218 ~ive~g~a~ 226 (242)
T COG4161 218 HIVEQGDAS 226 (242)
T ss_pred eeEeecchh
Confidence 999999864
No 225
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-37 Score=328.01 Aligned_cols=201 Identities=22% Similarity=0.314 Sum_probs=173.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899987542 3469999999999999999999999999999999999987 5789999999886
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
.....++.++|++|++.+++.+|++||+.+....+. .. .++.++++++.+++.+..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCChh-----hCCHHHHH
Confidence 543344568999999888888999999988654321 11 12346788999999887888764 79999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
|++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+.+|++++++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999888999999999986 6889999999986
No 226
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=9e-38 Score=382.33 Aligned_cols=250 Identities=27% Similarity=0.381 Sum_probs=192.5
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
...++..+.+|+.++.+.+++.+... ... ... ......++++|++|.++.. +++.+|+|+
T Consensus 300 ~~~~~~~~~~ri~~~l~~~~~~~~~~---~~~---~~~----~~~~~~i~~~~v~f~y~~~----------~~~~iL~~i 359 (576)
T TIGR02204 300 ELQRAAGAAERLIELLQAEPDIKAPA---HPK---TLP----VPLRGEIEFEQVNFAYPAR----------PDQPALDGL 359 (576)
T ss_pred HHHHHHHHHHHHHHHhCCCCcCCCCC---CCc---cCC----cCCCceEEEEEEEEECCCC----------CCCccccce
Confidence 34566777888887765433211100 000 000 0012358899999987421 125699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++++|||.++|+||||||||||+|+|+|.++ |.+|+|.+||.++.+ ..+++.++|+||++.++ +.|++||+.+
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~ 436 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLF-AASVMENIRY 436 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccc-cccHHHHHhc
Confidence 99999999999999999999999999999987 578999999998643 34567899999987766 4699999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. +..+++ .++++++.+++ ++..|+.+|+.| ..||||||||++||||++++|++|+||||||+
T Consensus 437 ~~-----~~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g-~~LSgGq~Qrl~laRal~~~~~ililDEpts~ 506 (576)
T TIGR02204 437 GR-----PDATDE----EVEAAARAAHAHEFISALPEGYDTYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSA 506 (576)
T ss_pred CC-----CCCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCCC-CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccc
Confidence 42 122222 24445555443 456788888766 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++.+++.|+++. +++|+|++||+++ ..+.+|++++|+ +|+++..|+.+
T Consensus 507 lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~-~g~~~~~g~~~ 559 (576)
T TIGR02204 507 LDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMD-QGRIVAQGTHA 559 (576)
T ss_pred cCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEE-CCEEEeeecHH
Confidence 99999999999999985 4899999999974 578899999998 58999999853
No 227
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-37 Score=333.32 Aligned_cols=214 Identities=24% Similarity=0.330 Sum_probs=175.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGGY 540 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g~ 540 (1045)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888888652 346999999999999999999999999999999999986521 26899999998
Q ss_pred eCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCC
Q 043954 541 PKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI----KDSLVGIP 611 (1045)
Q Consensus 541 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~ 611 (1045)
++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.+++.++.+++.+. .+..+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 144 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPG--- 144 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh---
Confidence 7642 123567899999988877 899999988653321 11223334557788888888542 34433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|++++|+
T Consensus 145 --~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~- 219 (250)
T PRK14262 145 --TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMY- 219 (250)
T ss_pred --hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 47999999999999999999999999999999999999999999999865 799999999976 5778899999998
Q ss_pred CcEEEEecCC
Q 043954 692 GGRIIYSGML 701 (1045)
Q Consensus 692 gG~~~~~G~~ 701 (1045)
+|+++..|++
T Consensus 220 ~G~i~~~g~~ 229 (250)
T PRK14262 220 RGELIEYGPT 229 (250)
T ss_pred CCEEEEecCH
Confidence 5899999875
No 228
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5e-37 Score=331.06 Aligned_cols=201 Identities=25% Similarity=0.333 Sum_probs=167.6
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC--eEEEEEEECCeeCCcccc-cccceEeecCCc--cCCCCC
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIQGEIRVGGYPKVQKTF-ARISGYCEQTDI--HSPQIT 565 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~--~~~G~I~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lT 565 (1045)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999988720 168999999988653322 356899999874 556789
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD---DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP 642 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP 642 (1045)
+.||+.+...... ......+++++++++.+++. +..++.+ ..|||||||||+|||||+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 11233345688999999997 3455555 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 643 TSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 643 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|+|||+.++..+.+.|++++++ |+|+|+++|+++ ++...+|++++|+ +|+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999875 899999999986 5778899999998 5999998875
No 229
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8.3e-37 Score=336.49 Aligned_cols=225 Identities=24% Similarity=0.345 Sum_probs=181.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+..... .+ ...++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~~---~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGGL---SG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCcc---cc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 678899887631000 00 0013569999999999999999999999999999999999877 57999999998754
Q ss_pred cc------cccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 043954 544 QK------TFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQS 614 (1045)
Q Consensus 544 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 614 (1045)
.. ..++.++|++|+. .+.+..|+.||+.+..... .....++..++++++++.+++. +..++.+ .
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 21 2356789999986 4667889999997653211 1123444455788999999996 4666665 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||++. ++.+.||++++|+ +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999765 899999999986 5667899999998 58
Q ss_pred EEEEecCCCc
Q 043954 694 RIIYSGMLGR 703 (1045)
Q Consensus 694 ~~~~~G~~~~ 703 (1045)
++++.|++++
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998653
No 230
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.4e-38 Score=412.62 Aligned_cols=250 Identities=19% Similarity=0.265 Sum_probs=196.6
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
..+...+.+|+.+..+.+++.+.......++. .-| ....++|+||+++|+. +.+++|+|+|
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~-------~wp-~~g~I~f~nVsf~Y~~-----------~~~~VL~~is 1259 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEAPLVIENNRPPP-------GWP-SSGSIKFEDVVLRYRP-----------ELPPVLHGLS 1259 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCCCC-------CCC-CCCcEEEEEEEEEeCC-----------CCCceeccee
Confidence 34566788999887765544321100000000 001 1236899999998742 2246999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
++|+|||.+||+|+||||||||+++|.|.++ |.+|+|.+||.++.+ ...|+.+++|||++.++.. |++|||...
T Consensus 1260 ~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~ 1336 (1622)
T PLN03130 1260 FEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPF 1336 (1622)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcC
Confidence 9999999999999999999999999999987 679999999998754 4567889999999888765 999999753
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
. ..++++ +.++++..+ +++..|+.+|+.|. +||||||||++|||||+++|+||+||||||+|
T Consensus 1337 ~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~-nLSgGQrQrlaLARALLr~p~ILILDEATSaL 1405 (1622)
T PLN03130 1337 N------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSEAGE-NFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405 (1622)
T ss_pred C------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccCCCC-CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 2 123332 444444443 45678999998774 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
|+++++.|.+.|++.. +++|+|+++|+++ ....||+|++|+ +|++++.|++++
T Consensus 1406 D~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd-~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1406 DVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD-AGRVVEFDTPEN 1458 (1622)
T ss_pred CHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE-CCEEEEeCCHHH
Confidence 9999999999999874 4899999999986 567799999998 599999999754
No 231
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.9e-37 Score=334.06 Aligned_cols=213 Identities=20% Similarity=0.290 Sum_probs=175.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC--CeEEEEEEECCe
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIQGEIRVGGY 540 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~--~~~~G~I~~~g~ 540 (1045)
.++++|+++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+++|+|.++|+
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 57889999864 13589999999999999999999999999999999998763 117899999998
Q ss_pred eCCcccc-cccceEeecCCc--cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCC
Q 043954 541 PKVQKTF-ARISGYCEQTDI--HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD---IKDSLVGIPGQS 614 (1045)
Q Consensus 541 ~~~~~~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~ 614 (1045)
++..... ++.++|++|++. +.+..|+.+++.+.+.... ... .+++++++++.+++.+ ..++.+ .
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYP-----F 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCC-----c
Confidence 8653222 356899999874 4566899999876433221 111 1245788999999976 345554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|+ +|
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-HG 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999765 899999999986 5668899999998 58
Q ss_pred EEEEecCC
Q 043954 694 RIIYSGML 701 (1045)
Q Consensus 694 ~~~~~G~~ 701 (1045)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (254)
T PRK10418 218 RIVEQGDV 225 (254)
T ss_pred EEEEecCH
Confidence 99998875
No 232
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.3e-36 Score=332.71 Aligned_cols=221 Identities=22% Similarity=0.319 Sum_probs=177.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478899988652 2469999999999999999999999999999999999731125789999999876
Q ss_pred Ccc---cccc-cceEeecCCccCCCCCHHHHHHHHhhhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 043954 543 VQK---TFAR-ISGYCEQTDIHSPQITVEESVKFSAWLRLP----PEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQ 613 (1045)
Q Consensus 543 ~~~---~~~~-~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 613 (1045)
... ..++ .++|++|++.+++.+|+.|++.+....... ......+..++++++++.+++. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 378999999999999999999875432110 0112223345678889999997 35566553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHh-cceEEEEecC
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEA-FDELLLMKAG 692 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 692 (1045)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+... +|++++|+ +
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-N 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-C
Confidence 249999999999999999999999999999999999999999999999877999999999975 34444 89999998 5
Q ss_pred cEEEEecCCC
Q 043954 693 GRIIYSGMLG 702 (1045)
Q Consensus 693 G~~~~~G~~~ 702 (1045)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 9999999864
No 233
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-37 Score=339.20 Aligned_cols=220 Identities=23% Similarity=0.376 Sum_probs=177.0
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 5 ~~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~ 70 (272)
T PRK15056 5 AGIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQP 70 (272)
T ss_pred ceEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 3578999998652 12469999999999999999999999999999999999987 579999999988
Q ss_pred CCcccccccceEeecCCccC--CCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 542 KVQKTFARISGYCEQTDIHS--PQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
......++.++|++|++.+. ...+++||+.++...... ........++.++++++.++|.+..++.++ .|||
T Consensus 71 i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSg 145 (272)
T PRK15056 71 TRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSG 145 (272)
T ss_pred hHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCH
Confidence 64322234589999986542 234789988653210000 001112234457788999999888888774 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
|||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||+++++ +|++++.
T Consensus 146 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~--~G~i~~~ 222 (272)
T PRK15056 146 GQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV--KGTVLAS 222 (272)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 577889998766 4899999
Q ss_pred cCCCc
Q 043954 699 GMLGR 703 (1045)
Q Consensus 699 G~~~~ 703 (1045)
|++++
T Consensus 223 g~~~~ 227 (272)
T PRK15056 223 GPTET 227 (272)
T ss_pred cCHHh
Confidence 98754
No 234
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-37 Score=337.01 Aligned_cols=215 Identities=25% Similarity=0.312 Sum_probs=176.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~---~~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 578999998652 24699999999999999999999999999999999998652 13689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
.++.. ...++.++|++|+..+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..+
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 166 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHENA-- 166 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc--
Confidence 88642 1345678999999888876 99999987653321 1122233455788888888853 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.||++++|+
T Consensus 167 ---~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 167 ---FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred ---ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999976 799999999986 5678899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|+++..|+.
T Consensus 242 -~G~i~~~g~~ 251 (272)
T PRK14236 242 -MGKLVEYGDT 251 (272)
T ss_pred -CCEEEecCCH
Confidence 5899998875
No 235
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.9e-38 Score=413.10 Aligned_cols=249 Identities=19% Similarity=0.250 Sum_probs=195.8
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
.+.+..+.+|+.+..+.+++.+.......++.. ...+..++|+||+++|+. +.+++|+|+|
T Consensus 1196 ~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~--------~p~~g~I~f~nVsf~Y~~-----------~~~~vL~~is 1256 (1495)
T PLN03232 1196 AENSLNSVERVGNYIDLPSEATAIIENNRPVSG--------WPSRGSIKFEDVHLRYRP-----------GLPPVLHGLS 1256 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccCCCCCCC--------CCCCCcEEEEEEEEEECC-----------CCCcccccce
Confidence 445667788998887665443211000000000 011235899999998732 2356999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
++|+|||.+||+||||||||||+++|.|.++ |.+|+|.+||.++.+ ...|+.+++|||++.+++. |++|||.+.
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~ 1333 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPF 1333 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCC
Confidence 9999999999999999999999999999987 679999999998753 4567889999999988864 999999753
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
. +.++++ +.++++..++ ++..|+.+|+.|. +||||||||++|||||+++|+||+||||||+|
T Consensus 1334 ~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G~-~LSgGQrQrlaLARALLr~~~ILILDEATSaL 1402 (1495)
T PLN03232 1334 S------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSEGGE-NFSVGQRQLLSLARALLRRSKILVLDEATASV 1402 (1495)
T ss_pred C------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 1 223332 4445554443 5678999998775 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|+++++.|.+.|++.. +++|+|+++|+++ ....||+|++|+ +|++++.|+++
T Consensus 1403 D~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~-~G~ivE~Gt~~ 1454 (1495)
T PLN03232 1403 DVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS-SGQVLEYDSPQ 1454 (1495)
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999864 4899999999985 567799999998 59999999874
No 236
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.3e-37 Score=366.74 Aligned_cols=220 Identities=22% Similarity=0.332 Sum_probs=182.8
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++++.+|+|.++|+++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 46788887652 35699999999999999999999999999999999998764336899999998864
Q ss_pred ccc----ccccceEeecCCccCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 043954 544 QKT----FARISGYCEQTDIHSPQITVEESVKFSAWLRLPP-EIDSETKARFVEEVIETIELDDIK-DSLVGIPGQSGLS 617 (1045)
Q Consensus 544 ~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LS 617 (1045)
... .++.++|++|++.+++.+||+||+.+........ ....++.+++++++++.+++.+.. ++.+ .+||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 321 2356899999998899999999998864322111 122334456688999999998654 4555 3799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|+ +|+++.
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~-~G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIR-DGQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEe-CCeEee
Confidence 99999999999999999999999999999999999999999999888999999999976 5778899999998 589999
Q ss_pred ecCCCc
Q 043954 698 SGMLGR 703 (1045)
Q Consensus 698 ~G~~~~ 703 (1045)
.|+.++
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 988764
No 237
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=332.84 Aligned_cols=215 Identities=26% Similarity=0.330 Sum_probs=175.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~--~-~~~G~I~~~g 539 (1045)
.++++|+++.+. .+++|+|+|++|++||+++|+||||||||||+|+|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 367899998652 24699999999999999999999999999999999998752 1 3689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 610 (1045)
++... ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++. +..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 145 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNA-- 145 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccCh--
Confidence 87632 123566899999987775 799999987643221 112233345577888888884 2234443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.+|++++|+
T Consensus 146 ---~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 146 ---QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 47999999999999999999999999999999999999999999999854 799999999986 5678899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|+++..|+.
T Consensus 221 -~G~i~~~~~~ 230 (251)
T PRK14251 221 -NGDLIEAGPT 230 (251)
T ss_pred -CCEEEEeCCH
Confidence 5899998875
No 238
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.7e-37 Score=336.61 Aligned_cols=209 Identities=27% Similarity=0.421 Sum_probs=164.3
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-----------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYK-----------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecC-----------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 5677877542 123569999999999999999999999999999999999987 578999999987532
Q ss_pred ---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCC
Q 043954 545 ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKA-----RFVEEVIETI--ELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 545 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~ 614 (1045)
...++.++|++|++.++ ..||+||+.+... ........ ...++.++.+ ++.+..+..+ .
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLF-NRSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQG-----A 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhc-cchHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCC-----C
Confidence 23456789999988766 4699999987431 11111111 1123344443 3333334433 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||++. ++ +.||++++|+ +|+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~-~G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVME-KGR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999864 899999999986 34 5799999998 589
Q ss_pred EEEecCC
Q 043954 695 IIYSGML 701 (1045)
Q Consensus 695 ~~~~G~~ 701 (1045)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9999875
No 239
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=5.9e-37 Score=323.41 Aligned_cols=195 Identities=26% Similarity=0.306 Sum_probs=167.0
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ |.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4677777542 3469999999999999999999999999999999999987 578999999987532
Q ss_pred --ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 545 --KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 545 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
...++.++|++|++.+++.+|++||+.+.... . .+++++++++.+++.+..++.+ +.|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23456789999998888899999999875311 1 1345788999999988777776 479999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
|++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. +..+.+|+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998878999999999986 577888998876
No 240
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=335.66 Aligned_cols=220 Identities=21% Similarity=0.284 Sum_probs=178.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999998763 356999999999999999999999999999999999987631 4689999999
Q ss_pred eeCCc----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 540 YPKVQ----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 540 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
.++.. ...++.++|++|++.+++ .|++||+.+..... ...+.++.++.+.++++.+++.+..++.... ....
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSD-SPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhC-Cccc
Confidence 87642 134567899999988777 79999998764322 1123334445567888999986533222111 1247
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|+|++||++. ++.+.+|++++|+ +|++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~-~G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFF-DGRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 5778899999998 5899
Q ss_pred EEecCCC
Q 043954 696 IYSGMLG 702 (1045)
Q Consensus 696 ~~~G~~~ 702 (1045)
+..|+++
T Consensus 241 ~~~g~~~ 247 (276)
T PRK14271 241 VEEGPTE 247 (276)
T ss_pred EEeCCHH
Confidence 9998753
No 241
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=331.87 Aligned_cols=216 Identities=24% Similarity=0.294 Sum_probs=174.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 367888888652 246999999999999999999999999999999999987631 2369999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI----KDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 610 (1045)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+. .++.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 145 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHKSG-- 145 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhCCc--
Confidence 87632 1345679999999888875 999999986543211 1122233456777888887532 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +++|+|++||+++ ++.+.||++++|+
T Consensus 146 ---~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14249 146 ---LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL 220 (251)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe
Confidence 4799999999999999999999999999999999999999999999985 5899999999986 5778899999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|++++.|+.+
T Consensus 221 -~G~i~~~~~~~ 231 (251)
T PRK14249 221 -TGDLVEYGRTG 231 (251)
T ss_pred -CCeEEEeCCHH
Confidence 58999998753
No 242
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=332.58 Aligned_cols=215 Identities=26% Similarity=0.302 Sum_probs=175.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCe---EEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~---~~G~I~~~g 539 (1045)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++.| .+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478899988652 3469999999999999999999999999999999999754212 489999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI----KDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++. ||+||+.+....+.. ....+.++.++++++.+++.+. .++.+
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 147 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDSA-- 147 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcCh--
Confidence 88642 1234568999999888874 999999987543311 1223334567788888887532 33433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.|+++++ ++|+|++||++. ++.+.+|++++|+
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 148 ---LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999876 689999999976 4667899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|+++..|+.
T Consensus 223 -~G~i~~~g~~ 232 (253)
T PRK14261 223 -LGKLIEFDKT 232 (253)
T ss_pred -CCEEEEcCCH
Confidence 5899998875
No 243
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=334.18 Aligned_cols=218 Identities=21% Similarity=0.284 Sum_probs=177.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999998652 235999999999999999999999999999999999987631 1479999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI----KDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 610 (1045)
+++.. ...++.++|++|+..+++ .|+.||+.+...... .....+.++++.++++.+++.+. .++.+
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 148 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSA-- 148 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc--
Confidence 87531 133566899999888777 899999987643221 11223334567889999988542 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
..||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||++. ++.+.||++++|
T Consensus 149 ---~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l 224 (261)
T PRK14258 149 ---LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFF 224 (261)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 47999999999999999999999999999999999999999999999875 4899999999986 578899999999
Q ss_pred ecC----cEEEEecCCC
Q 043954 690 KAG----GRIIYSGMLG 702 (1045)
Q Consensus 690 ~~g----G~~~~~G~~~ 702 (1045)
+++ |++++.|+++
T Consensus 225 ~~~~~~~G~i~~~~~~~ 241 (261)
T PRK14258 225 KGNENRIGQLVEFGLTK 241 (261)
T ss_pred ccCCCcCceEEEeCCHH
Confidence 842 8999999863
No 244
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.2e-37 Score=323.61 Aligned_cols=199 Identities=21% Similarity=0.273 Sum_probs=165.8
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 46778887652 3469999999999999999999999999999999999987 57999999998764
Q ss_pred c--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 544 Q--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 544 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
. ...++.++|++|++.+++.+|+.||+.+...... . ..+++++++++.+|+.+..++.+ +.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345668999999888899999999988654321 1 12345788999999987777776 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
||++|||||+++|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+..+|++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999999877899999999976 343433455554
No 245
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7e-37 Score=367.25 Aligned_cols=212 Identities=21% Similarity=0.346 Sum_probs=182.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899998652 3469999999999999999999999999999999999987 5799999999876
Q ss_pred Ccc---c-ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQK---T-FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
... . .++.++|++|++.+++.+||+||+.+.... ..+.+++++++++.+++.+..++.++ +|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCH
Confidence 431 1 124589999999999999999999875311 12234567889999999888888774 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|+ +|++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~-~G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMR-DGTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999976 5778899999998 5899999
Q ss_pred cCCCc
Q 043954 699 GMLGR 703 (1045)
Q Consensus 699 G~~~~ 703 (1045)
|+.++
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98754
No 246
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=337.40 Aligned_cols=216 Identities=20% Similarity=0.287 Sum_probs=175.7
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEEC
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIQGEIRVG 538 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~--~-~~~~G~I~~~ 538 (1045)
..++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ + .+.+|+|.++
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 3578999998652 2459999999999999999999999999999999999743 1 1368999999
Q ss_pred CeeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccc
Q 043954 539 GYPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVG 609 (1045)
Q Consensus 539 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg 609 (1045)
|+++.. ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++. +..++.+
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~- 180 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKNA- 180 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCCh-
Confidence 987532 1245678999999887775 999999986533211 12223345577888888874 3344444
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 610 IPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 610 ~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|
T Consensus 181 ----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 181 ----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999865 689999999986 567889999999
Q ss_pred ecCcEEEEecCC
Q 043954 690 KAGGRIIYSGML 701 (1045)
Q Consensus 690 ~~gG~~~~~G~~ 701 (1045)
+ +|+++..|+.
T Consensus 255 ~-~G~i~~~g~~ 265 (286)
T PRK14275 255 Y-EGVLVEHAPT 265 (286)
T ss_pred E-CCEEEEeCCH
Confidence 8 5899999875
No 247
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=334.76 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=174.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~--~-~~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478999998652 3469999999999999999999999999999999999643 1 24689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++. |++||+.+...... .......++.+++.++.+++.+ ..++.+
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 162 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA-- 162 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--
Confidence 88642 1235678999999887775 99999987643221 1122223445677888888742 234444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+
T Consensus 163 ---~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 163 ---LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999965 689999999976 5778899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|++++.|+.
T Consensus 238 -~G~i~~~~~~ 247 (268)
T PRK14248 238 -NGDLVEYDQT 247 (268)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
No 248
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=347.21 Aligned_cols=230 Identities=26% Similarity=0.390 Sum_probs=198.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
-++.+|+++++ +..++|+||||++++||++||+|.||||||||+|+|+|.++ |++|+|.+||++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 46788888765 34679999999999999999999999999999999999988 6799999999986
Q ss_pred Ccc----cccccceEeecCCccCCCCCHHHHHHHHhhhcC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 543 VQK----TFARISGYCEQTDIHSPQITVEESVKFSAWLRL-PPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
... ....-++.|.|+..+.|++||.||+.++...+. ..-++.++.++++.++++.+++....+++++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 432 233458899999999999999999988765443 2345777778889999999999655888886 699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
+||||-|+|||||..+++||+||||||+|+....+.+.+.+++++++|.++|++||+++ |+++.|||+.||. +|+.+.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlR-DG~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLR-DGRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEe-CCEEee
Confidence 99999999999999999999999999999999999999999999999999999999986 8999999999997 599999
Q ss_pred ecCC-Cc-chhHHHHHHhc
Q 043954 698 SGML-GR-HSSKLIEYFQG 714 (1045)
Q Consensus 698 ~G~~-~~-~~~~~~~~f~~ 714 (1045)
.++. ++ ..+++.+.+..
T Consensus 226 ~~~~~~~~~~~~lv~~MvG 244 (500)
T COG1129 226 TRPTAAETSEDELVRLMVG 244 (500)
T ss_pred ecccccCCCHHHHHHHhhC
Confidence 8883 43 44566666553
No 249
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=330.76 Aligned_cols=215 Identities=24% Similarity=0.298 Sum_probs=173.4
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~--~~-~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899998652 2469999999999999999999999999999999999753 11 2589999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++. +..+..+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~-- 146 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHESA-- 146 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcCc--
Confidence 87632 123467899999988877 6999999886543211 12222234566778877764 2233433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||++. ++.+.+|++++|+
T Consensus 147 ---~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 147 ---LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999976 589999999986 5678899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|+++..|++
T Consensus 222 -~G~i~~~~~~ 231 (252)
T PRK14255 222 -TGNLIEFADT 231 (252)
T ss_pred -CCEEEEeCCH
Confidence 5899998875
No 250
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=335.13 Aligned_cols=217 Identities=19% Similarity=0.240 Sum_probs=175.2
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEE
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRV 537 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~ 537 (1045)
+..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 44688999998652 346999999999999999999999999999999999986421 25899999
Q ss_pred CCeeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccc
Q 043954 538 GGYPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLV 608 (1045)
Q Consensus 538 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~v 608 (1045)
+|+++.. ...++.++|++|+..+++. ||.||+.+....+. ... ..++.+++.++.+++. +..++.+
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~ 159 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEKG 159 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCCc
Confidence 9987632 2335678999999887764 99999987643321 111 1223456777877764 2334443
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEE
Q 043954 609 GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLL 688 (1045)
Q Consensus 609 g~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~ 688 (1045)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++
T Consensus 160 -----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 232 (274)
T PRK14265 160 -----TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAF 232 (274)
T ss_pred -----ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 47999999999999999999999999999999999999999999999865 789999999986 57789999999
Q ss_pred Ee--------cCcEEEEecCCC
Q 043954 689 MK--------AGGRIIYSGMLG 702 (1045)
Q Consensus 689 l~--------~gG~~~~~G~~~ 702 (1045)
|+ ++|++++.|+++
T Consensus 233 l~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 233 FNTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred EecccccccccCceEEEeCCHH
Confidence 97 259999999863
No 251
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=364.78 Aligned_cols=217 Identities=27% Similarity=0.332 Sum_probs=182.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 367889988652 3469999999999999999999999999999999999887 5799999999886
Q ss_pred Ccc----cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQK----TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
... ..++.++|++|++.+++.+||+||+.++............+.+++++++++.+++.+..++.++ +|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCH
Confidence 421 2345689999998899999999999885321111112333445678899999999877777764 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|+ +|+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~-~G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFK-DGRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEee
Confidence 9999999999999999999999999999999999999999999888999999999986 5778899999998 5899877
Q ss_pred cCC
Q 043954 699 GML 701 (1045)
Q Consensus 699 G~~ 701 (1045)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 653
No 252
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=349.19 Aligned_cols=224 Identities=23% Similarity=0.327 Sum_probs=188.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC--eEEEEEEECCe
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIQGEIRVGGY 540 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~--~~~G~I~~~g~ 540 (1045)
-++++||+.++... .+..++++||||++.+||++||+|.|||||||+.+.|.|+.+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 46788888877532 12357999999999999999999999999999999999987754 25899999998
Q ss_pred eCCc---c----cccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 043954 541 PKVQ---K----TFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIP 611 (1045)
Q Consensus 541 ~~~~---~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 611 (1045)
++.. . -+.+.++|++|++ .+.|.+||.+-+.-....+.. .+.++.++++.++++.+||++.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6432 1 1236789999986 577889999998876655532 3367778889999999999876654 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.++.|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.++ |.++|++|||+. -+.+.|||++||.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 34689999999999999999999999999999999999999999999999855 999999999986 4778999999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|++++.|+.+
T Consensus 230 -~G~iVE~G~~~ 240 (539)
T COG1123 230 -KGEIVETGPTE 240 (539)
T ss_pred -CCEEEEecCHH
Confidence 59999999874
No 253
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=330.45 Aligned_cols=221 Identities=21% Similarity=0.272 Sum_probs=178.9
Q ss_pred ceeEEEeceEEEEecCcc----ccc--ccc-ccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEE
Q 043954 461 QLTMAFKDVRYFVDTPPA----MRK--QGF-NEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQG 533 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~----~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G 533 (1045)
++++.++|++.+++.... .+. .++ ...++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G 79 (264)
T PRK13546 2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVG 79 (264)
T ss_pred CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCce
Confidence 456788888877765311 111 111 2245679999999999999999999999999999999999987 5789
Q ss_pred EEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 043954 534 EIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQ 613 (1045)
Q Consensus 534 ~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 613 (1045)
+|.++|. +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..++.+
T Consensus 80 ~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (264)
T PRK13546 80 KVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV----- 141 (264)
T ss_pred EEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----
Confidence 9999985 235566666677899999998754332 1233444455778888889988777766
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|+ +|
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G 219 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GG 219 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CC
Confidence 379999999999999999999999999999999999999999999999878999999999975 5678899999998 58
Q ss_pred EEEEecCCCc
Q 043954 694 RIIYSGMLGR 703 (1045)
Q Consensus 694 ~~~~~G~~~~ 703 (1045)
+++..|+.++
T Consensus 220 ~i~~~g~~~~ 229 (264)
T PRK13546 220 KLKDYGELDD 229 (264)
T ss_pred EEEEeCCHHH
Confidence 9999988643
No 254
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=364.29 Aligned_cols=207 Identities=24% Similarity=0.309 Sum_probs=176.3
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccccceEeecCCccCCC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK----TFARISGYCEQTDIHSPQ 563 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ 563 (1045)
++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++... ..++.++|++|+..+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 3569999999999999999999999999999999999887 5799999999886421 234568999999888899
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 043954 564 ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPT 643 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPt 643 (1045)
+||+||+.+..........+.++..++++++++.+++.+..++.++ +|||||||||+|||||+.+|++|+|||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999999875321101111233344568899999999887787764 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 644 SGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 644 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++|+ +|+++..|++++
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~ 220 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILR-DGQWIATQPLAG 220 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEeecChhh
Confidence 999999999999999999888999999999986 5778899999998 599999998765
No 255
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=334.05 Aligned_cols=213 Identities=24% Similarity=0.332 Sum_probs=174.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~---~~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .|.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 578999998652 24699999999999999999999999999999999998752 14689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
.++.. ...++.++|++|+..+++. ||.||+.+....+. ... ..+++++++++.+++.+ ..+..+
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~-- 178 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSG-- 178 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCc--
Confidence 87532 2345678999999887775 99999988654331 122 23456788999998853 344443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEE-EE
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELL-LM 689 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~-~l 689 (1045)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.+|+++ +|
T Consensus 179 ---~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 179 ---LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 47999999999999999999999999999999999999999999999976 489999999976 5677899976 45
Q ss_pred ecCcEEEEecCC
Q 043954 690 KAGGRIIYSGML 701 (1045)
Q Consensus 690 ~~gG~~~~~G~~ 701 (1045)
+ +|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 6999998875
No 256
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=333.33 Aligned_cols=215 Identities=21% Similarity=0.243 Sum_probs=173.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~--~-~~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 478999998652 2469999999999999999999999999999999999864 1 14789999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD----DIKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++ .|++||+.+....+. ..+.+..++.+.+.++.+++. +..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-- 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA-- 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc--
Confidence 87632 133567899999988776 599999998653321 112222334566777776543 2334433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ ++.+.||++++|+
T Consensus 166 ---~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 166 ---YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999876 799999999976 5678899999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|+++..|+.
T Consensus 241 -~G~i~~~g~~ 250 (271)
T PRK14238 241 -NGYVNEYDDT 250 (271)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
No 257
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.2e-36 Score=331.39 Aligned_cols=198 Identities=25% Similarity=0.376 Sum_probs=169.9
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHH
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
+|+|+|+++++||+++|+||||||||||+++|+|..+ + +|+|.++|+++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999875 3 8999999987643 22345689999998888889999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCeEEEe
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS-------NPSIIFMD 640 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~-------~p~illLD 640 (1045)
||+.+..... ...++.+++++++++.+++.+..++.+ +.||||||||++|||||+. +|++|+||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998753211 122333456889999999987777776 3799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 641 EPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 641 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|+ +|+++..|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999877999999999986 5788999999998 58999998764
No 258
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-36 Score=330.92 Aligned_cols=215 Identities=24% Similarity=0.318 Sum_probs=174.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP- 541 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~- 541 (1045)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 367888888652 2458999999999999999999999999999999999987 578999999976
Q ss_pred ----CCcc---c----ccccceEeecCCc--cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 043954 542 ----KVQK---T----FARISGYCEQTDI--HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSL 607 (1045)
Q Consensus 542 ----~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ 607 (1045)
+... . .++.++|++|++. +.+..|+.||+.+..... .. ....+.++.++++++.+++. +..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3221 1 1345899999864 456679999987542211 10 11122345678999999996 356666
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceE
Q 043954 608 VGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDEL 686 (1045)
Q Consensus 608 vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v 686 (1045)
+ +.||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |.|+|+++|++. ++.+.+|++
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 5 479999999999999999999999999999999999999999999998764 899999999975 566789999
Q ss_pred EEEecCcEEEEecCC
Q 043954 687 LLMKAGGRIIYSGML 701 (1045)
Q Consensus 687 ~~l~~gG~~~~~G~~ 701 (1045)
++|+ +|++++.|+.
T Consensus 220 ~~l~-~G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQ-QGRVVESGLT 233 (253)
T ss_pred EEEE-CCEEEEECCH
Confidence 9998 5899998875
No 259
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.4e-36 Score=317.99 Aligned_cols=179 Identities=24% Similarity=0.340 Sum_probs=152.2
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-----ccccccceEeecCCc-cC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-----KTFARISGYCEQTDI-HS 561 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 561 (1045)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++... ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3569999999999999999999999999999999999887 579999999987631 123456899999863 33
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 043954 562 PQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDE 641 (1045)
Q Consensus 562 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDE 641 (1045)
...||+||+.+..... ..+.++.++.++++++.+++.+..++.+ +.||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4579999999864322 1233444556889999999988778776 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 642 PTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 642 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
||+|||+.+++.+.+.|++++++|+|+|++||++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999888999999999974
No 260
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=329.39 Aligned_cols=219 Identities=21% Similarity=0.246 Sum_probs=176.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.+..+++++.+ +++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++. +.+|+|.++|
T Consensus 8 ~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 74 (261)
T PRK14263 8 VMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG 74 (261)
T ss_pred eEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC
Confidence 45666666643 2456999999999999999999999999999999999987631 2689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 614 (1045)
+++.. ...++.++|++|++.++ .+|+.||+.+....+. . ..+..+.++++++.+++.+..+...+. ..+
T Consensus 75 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~~ 148 (261)
T PRK14263 75 QDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SGL 148 (261)
T ss_pred EeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Ccc
Confidence 87632 12356689999998776 5999999998754331 1 122345688899999986433222221 124
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe----
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK---- 690 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~---- 690 (1045)
.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|++++ +++|+|++||+++ ++.+.||++++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~ 226 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDIS 226 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccc
Confidence 799999999999999999999999999999999999999999999985 4799999999986 5778999999996
Q ss_pred ---cCcEEEEecCCC
Q 043954 691 ---AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ---~gG~~~~~G~~~ 702 (1045)
++|+++..|+.+
T Consensus 227 ~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 227 QGTRTGYLVEMGPTA 241 (261)
T ss_pred cccCCceEEEeCCHH
Confidence 369999999753
No 261
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.2e-37 Score=407.24 Aligned_cols=250 Identities=18% Similarity=0.233 Sum_probs=197.0
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
...++..+.+|+.+..+.+++.+.......++. .-| ....++|+||+++|+. +..++|+||
T Consensus 1245 ~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~-------~wp-~~g~I~f~nVsf~Y~~-----------~~~~vL~~i 1305 (1522)
T TIGR00957 1245 EMETNIVAVERLKEYSETEKEAPWQIQETAPPS-------GWP-PRGRVEFRNYCLRYRE-----------DLDLVLRHI 1305 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccccCCCCCC-------CCC-CCCcEEEEEEEEEeCC-----------CCcccccce
Confidence 345667788999888765543221000000000 001 1236899999998752 224699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++|+|||.+||+|+||||||||+++|.|.++ +.+|+|.+||.|+.+ ...|+.+++|||++.++.. |++|||..
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp 1382 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDP 1382 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCc
Confidence 99999999999999999999999999999987 678999999999754 4567889999999888875 99999962
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
.. ..++++ +.++++..++ ++..|+.+|+.|. +||||||||++|||||+++|+||+||||||+
T Consensus 1383 ~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G~-~LSgGQrQrl~LARALLr~~~ILiLDEaTSa 1451 (1522)
T TIGR00957 1383 FS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEGGE-NLSVGQRQLVCLARALLRKTKILVLDEATAA 1451 (1522)
T ss_pred cc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCCCC-cCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 11 223332 4455555544 4678999998774 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+++...|.+.|++.. +++|+|+++|+++ ....+|+|++|+ +|++++.|+++
T Consensus 1452 lD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld-~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1452 VDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD-KGEVAEFGAPS 1504 (1522)
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999999999864 4899999999975 577899999998 59999999874
No 262
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-36 Score=321.33 Aligned_cols=197 Identities=25% Similarity=0.339 Sum_probs=165.8
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67888887652 3469999999999999999999999999999999999887 57899999998753
Q ss_pred cccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 544 QKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 544 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
....++.++|++|++.+++.+|++||+.+...... .. .+.++++++.+|+.+..++.++ .||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPFG-----YLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCChh-----hcCHHHHHH
Confidence 22255678999998888889999999987543321 11 1347889999999877676663 799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++ .. |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEeec
Confidence 99999999999999999999999999999999999998888999999999975 33 33 8887774
No 263
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-37 Score=331.20 Aligned_cols=209 Identities=27% Similarity=0.387 Sum_probs=165.3
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+.. .++.+++|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 46777775521 12369999999999999999999999999999999999987 579999999987532
Q ss_pred ---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCC
Q 043954 545 ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKA-----RFVEEVIETI--ELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 545 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~ 614 (1045)
...++.++|++|++.+++ .||+||+.+.... ....... ..+++.++.+ ++.+..+..+ .
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERG-----V 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCC-----C
Confidence 233566899999987776 6999999875321 1111111 1234455554 4544444443 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++||++. ++ +.||++++|+ +|+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~-~G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLE-DGK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEec-CCe
Confidence 7999999999999999999999999999999999999999999999864 899999999986 44 4599999998 589
Q ss_pred EEEecCC
Q 043954 695 IIYSGML 701 (1045)
Q Consensus 695 ~~~~G~~ 701 (1045)
++..|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 9988864
No 264
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-36 Score=312.22 Aligned_cols=169 Identities=28% Similarity=0.443 Sum_probs=149.4
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 4677777542 2359999999999999999999999999999999999887 568999999987643
Q ss_pred --ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 545 --KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 545 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
...++.++|++|++.+++.+|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567899999988888899999863 8999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+.+|++++|++ |+
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 999999999999999999999999999999999999999887899999999976 56778999999985 64
No 265
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=331.99 Aligned_cols=214 Identities=18% Similarity=0.232 Sum_probs=173.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|+..+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899988652 246999999999999999999999999999999999975421 3689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++ .|+.||+.+....+. .. .+.++.++++++.+++.+ ..++.+
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 149 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQSG-- 149 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCCc--
Confidence 87631 233566899999988777 499999988653321 11 122345667777777743 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+
T Consensus 150 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 150 ---LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 47999999999999999999999999999999999999999999999976 589999999986 6889999999997
Q ss_pred c--------CcEEEEecCC
Q 043954 691 A--------GGRIIYSGML 701 (1045)
Q Consensus 691 ~--------gG~~~~~G~~ 701 (1045)
+ .|++++.|++
T Consensus 225 ~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 5899999875
No 266
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-37 Score=329.80 Aligned_cols=210 Identities=27% Similarity=0.439 Sum_probs=163.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. +.+.+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 367888888652 12359999999999999999999999999999999999987 5789999999875
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKD-------SLVGIPG 612 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~ 612 (1045)
.. ...++.++|++|++.+++. |++||+.+.... ...+ .+++.++.+++.+..+ +..+..
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATDE----EVIEAAKEAGAHDFIMKLPNGYDTVLGEN- 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCHH----HHHHHHHHhChHHHHHhCcccccCHhhcC-
Confidence 42 2345668999999877765 999999875311 1111 1233333333322111 111111
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
.+.||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.|++++ +|+|+|++||++. ++ +.||++++|+ +
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~-~ 212 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLD-D 212 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEe-C
Confidence 25799999999999999999999999999999999999999999999985 5899999999986 34 5699999998 5
Q ss_pred cEEEEecCC
Q 043954 693 GRIIYSGML 701 (1045)
Q Consensus 693 G~~~~~G~~ 701 (1045)
|++++.|+.
T Consensus 213 g~~~~~~~~ 221 (229)
T cd03254 213 GKIIEEGTH 221 (229)
T ss_pred CeEEEeCCH
Confidence 899988764
No 267
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-36 Score=326.09 Aligned_cols=209 Identities=24% Similarity=0.411 Sum_probs=167.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-----------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcC-----------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 56788887542 112469999999999999999999999999999999999886 57899999998753
Q ss_pred c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCC
Q 043954 544 Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVG------IPGQS 614 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~ 614 (1045)
. ...++.++|++|++.+++ .|+.||+.+... ... ++.++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 223457899999987776 699999976421 111 1235567777788765554321 01124
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|+|++||++. . .+.||++++|+ +|+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~-~g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMD-SGR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEe-CCe
Confidence 79999999999999999999999999999999999999999999998764 89999999986 3 47999999998 588
Q ss_pred EEEec
Q 043954 695 IIYSG 699 (1045)
Q Consensus 695 ~~~~G 699 (1045)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 87654
No 268
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=338.00 Aligned_cols=254 Identities=27% Similarity=0.410 Sum_probs=200.2
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
+.++....|+.+++.+.+.+....+..+. ..+.....+.|++++|.+. +.+++|+++|
T Consensus 226 i~q~ltdme~mfdLl~~~~~v~d~pda~~----------L~~~~~g~v~F~~V~F~y~------------~~r~iL~~is 283 (497)
T COG5265 226 IRQALTDMEKMFDLLDVEAEVSDAPDAPP----------LWPVRLGAVAFINVSFAYD------------PRRPILNGIS 283 (497)
T ss_pred HHHhhhhHHHHHHhhccchhhccCCCCcc----------ccccccceEEEEEEEeecc------------ccchhhcCcc
Confidence 44556667777776665544333221111 0012344688999999764 3578999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
+++++|+.+|++||||+||||++++|-..++ +.+|.|.+||+++.. ...|+.+|.|||+..++ +.|+..|+.++
T Consensus 284 f~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLF-NDti~yni~yg 360 (497)
T COG5265 284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF-NDTIAYNIKYG 360 (497)
T ss_pred ccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcchhHHHhHHHHHHHHhCcCcccceeh-hhhHHHHHhcc
Confidence 9999999999999999999999999999887 579999999998643 45778899999977776 45999999987
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAI 653 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~ 653 (1045)
..-....+...+.+.+.+.+.++ .+++..|+.||+.|. .|||||||||+|||+++++|+||+|||.||+||..++++
T Consensus 361 r~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~ 437 (497)
T COG5265 361 RPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437 (497)
T ss_pred CccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHH
Confidence 43221111122223334455555 578999999999987 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 654 VMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 654 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|...|++.. .|+|.+++.|+++ ..--+|+|++|+ +|++++.|..+
T Consensus 438 iq~~l~~~~-~~rttlviahrls--ti~~adeiivl~-~g~i~erg~h~ 482 (497)
T COG5265 438 IQAALREVS-AGRTTLVIAHRLS--TIIDADEIIVLD-NGRIVERGTHE 482 (497)
T ss_pred HHHHHHHHh-CCCeEEEEeehhh--hccCCceEEEee-CCEEEecCcHH
Confidence 999999986 5999999999987 466789999998 59999999864
No 269
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=8.4e-37 Score=331.35 Aligned_cols=210 Identities=26% Similarity=0.409 Sum_probs=162.5
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+.. .+++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 46777775521 012469999999999999999999999999999999999987 579999999987532
Q ss_pred ---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCC
Q 043954 545 ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKAR-----FVEEVIETI--ELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 545 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~vg~~~~~ 614 (1045)
...++.++|++|++.+++ .||+||+.+....+ ..++..+ .+.+.++.+ ++....+..+ +
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERG-----S 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccCC-----c
Confidence 223456899999887765 69999998753211 1111111 112222322 2332333332 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
.||||||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++ +|+|+|++||++. ++ +.||++++|+ +|+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~-~G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQ-NGQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CCE
Confidence 799999999999999999999999999999999999999999999987 7899999999986 34 5899999998 589
Q ss_pred EEEecCC
Q 043954 695 IIYSGML 701 (1045)
Q Consensus 695 ~~~~G~~ 701 (1045)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 9998874
No 270
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.3e-36 Score=318.38 Aligned_cols=194 Identities=23% Similarity=0.293 Sum_probs=162.2
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 4677776542 3569999999999999999999999999999999999887 579999999987542
Q ss_pred --ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 545 --KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 545 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
...++.++|++|++.+++.+|+.||+.+....+. . + ++.++++++.+++.+..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHH
Confidence 2234668999999888888999999987654321 1 1 2346788999999887777764 79999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEE
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLL 688 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~ 688 (1045)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++.. -.+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999999999999999999999998889999999999752 24566553
No 271
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.4e-36 Score=327.12 Aligned_cols=220 Identities=25% Similarity=0.314 Sum_probs=172.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++ ++++|+|+|++|++||+++|+||||||||||+|+|+|..+..+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788887652 34699999999999999999999999999999999998421157899999998754
Q ss_pred cc---c-ccccceEeecCCccCCCCCHHHHHHHHhh-hcC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 043954 544 QK---T-FARISGYCEQTDIHSPQITVEESVKFSAW-LRL--P-PEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQS 614 (1045)
Q Consensus 544 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 614 (1045)
.. . .++.++|++|++.+++.+|+.+++.+... ++. . .........+.+++.++.+++. +..++.+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 21 1 22458999999888888888777654311 110 0 0112222345678889999985 34454442 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHh-cceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEA-FDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG 693 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. .+... +|++++|+ +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QG 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999877899999999975 34444 89999997 58
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
++++.|+.+
T Consensus 223 ~i~~~g~~~ 231 (248)
T PRK09580 223 RIVKSGDFT 231 (248)
T ss_pred eEEEeCCHH
Confidence 999999753
No 272
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-36 Score=326.85 Aligned_cols=215 Identities=24% Similarity=0.328 Sum_probs=175.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~--~-~~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 467888887652 3469999999999999999999999999999999999753 1 13689999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI----KDSLVGI 610 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 610 (1045)
+++.. ...++.++|++|++.+++. |+.||+.+..... ...+.+..+++++++++.+++.+. .++.+
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 144 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLDKSA-- 144 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCc--
Confidence 88642 1335678999999888775 9999998764322 111233345667888998888542 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.+|++++|+
T Consensus 145 ---~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~ 219 (250)
T PRK14266 145 ---LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFL 219 (250)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 47999999999999999999999999999999999999999999999864 899999999986 6788899999997
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|++++.|++
T Consensus 220 -~G~i~~~g~~ 229 (250)
T PRK14266 220 -NGEIIESGLT 229 (250)
T ss_pred -CCeEEEeCCH
Confidence 5899999875
No 273
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-36 Score=328.20 Aligned_cols=215 Identities=24% Similarity=0.340 Sum_probs=174.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC----
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVG---- 538 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~---- 538 (1045)
.+.++++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++
T Consensus 10 ~i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~ 74 (257)
T PRK14246 10 VFNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVL 74 (257)
T ss_pred heeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEE
Confidence 36788888765 24569999999999999999999999999999999999876 455555554
Q ss_pred --CeeCCc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 043954 539 --GYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSLVG 609 (1045)
Q Consensus 539 --g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 609 (1045)
|++... ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+ ..+..+
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 151 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPA- 151 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCc-
Confidence 444321 2345678999999998899999999998743221 1123344566888999999863 334433
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 610 IPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 610 ~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. .+.+.||++++|
T Consensus 152 ----~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l 225 (257)
T PRK14246 152 ----SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFL 225 (257)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999865 699999999975 566889999999
Q ss_pred ecCcEEEEecCCC
Q 043954 690 KAGGRIIYSGMLG 702 (1045)
Q Consensus 690 ~~gG~~~~~G~~~ 702 (1045)
+ +|+++..|+.+
T Consensus 226 ~-~g~i~~~g~~~ 237 (257)
T PRK14246 226 Y-NGELVEWGSSN 237 (257)
T ss_pred E-CCEEEEECCHH
Confidence 8 58999998753
No 274
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=296.25 Aligned_cols=199 Identities=22% Similarity=0.355 Sum_probs=171.1
Q ss_pred cccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCC
Q 043954 482 QGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTD 558 (1045)
Q Consensus 482 ~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~ 558 (1045)
.+|..++.++|+++|+.+.+||..+|.||||||||||+|+++.+.+ |++|++++.|++.+. ..+|..++||.|.+
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCc
Confidence 3455567789999999999999999999999999999999999987 689999999998653 56788899999999
Q ss_pred ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeE
Q 043954 559 IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSII 637 (1045)
Q Consensus 559 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~il 637 (1045)
.+++. ||+||+.|...+|.... + ++...+.++++++.+. .++.+ .+||||||||++|+|.|..-|+||
T Consensus 87 aLfg~-tVeDNlifP~~~r~rr~-d----r~aa~~llar~~l~~~~L~k~i-----t~lSGGE~QriAliR~Lq~~P~IL 155 (223)
T COG4619 87 ALFGD-TVEDNLIFPWQIRNRRP-D----RAAALDLLARFALPDSILTKNI-----TELSGGEKQRIALIRNLQFMPKIL 155 (223)
T ss_pred ccccc-chhhccccchHHhccCC-C----hHHHHHHHHHcCCchhhhcchh-----hhccchHHHHHHHHHHhhcCCceE
Confidence 99876 99999999877764322 1 2345678899999764 45555 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 638 FMDEPTSGLDARAAAIVMRAVKNVV-RTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 638 lLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
+||||||+||+.+++.|-+.|.++. ++++.++.+||+++ +..+.+|+++-+.. |+.
T Consensus 156 LLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 156 LLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred EecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 9999999999999999999999987 56899999999986 56889999999974 654
No 275
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-37 Score=302.45 Aligned_cols=207 Identities=25% Similarity=0.423 Sum_probs=181.4
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQ 563 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 563 (1045)
+++.+|+|+|++|++|.+++|+|||||||||||.+++.+.+ .++|+|.++|.++.. ....+.++.+-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 56789999999999999999999999999999999999887 579999999998753 3455677888898888899
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 043954 564 ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPT 643 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPt 643 (1045)
+||+|-+.|+..-....... ++.+..+++.++.++|++..|+.+. +||||||||.-||..++++.+.++||||.
T Consensus 90 lTV~dLv~FGRfPYSqGRlt-~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPYSQGRLT-KEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcccCCCCc-hHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEEEecCcc
Confidence 99999999974322222233 3445679999999999999999884 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 644 SGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 644 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
++||-..+.++|+.|++++++ |+|++++.||.+. .-.++|+|+-|+ +|+++..|++++
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~e 222 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDE 222 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHH
Confidence 999999999999999999987 9999999999873 556789999998 599999999875
No 276
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=367.47 Aligned_cols=227 Identities=21% Similarity=0.208 Sum_probs=184.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+...... ..-..+.+.+|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 47899999877421000 0000012469999999999999999999999999999999999987 5789999999876
Q ss_pred Ccc------cccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 043954 543 VQK------TFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQ 613 (1045)
Q Consensus 543 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 613 (1045)
... ..++.++|++|++ .+++.+||.||+.+...... ....++.+++++++++.+||. +..++.+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 421 2345789999986 58889999999987643321 112344456788999999996 5667776
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
++|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|+|++||+++ .+.+.||++++|+ +
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~-~ 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMY-L 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999875 899999999986 5778899999998 5
Q ss_pred cEEEEecCCC
Q 043954 693 GRIIYSGMLG 702 (1045)
Q Consensus 693 G~~~~~G~~~ 702 (1045)
|++++.|+++
T Consensus 540 G~iv~~g~~~ 549 (623)
T PRK10261 540 GQIVEIGPRR 549 (623)
T ss_pred CEEEEecCHH
Confidence 8999999864
No 277
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-36 Score=318.27 Aligned_cols=194 Identities=21% Similarity=0.284 Sum_probs=164.1
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 56788887652 3469999999999999999999999999999999999987 57999999998764
Q ss_pred c--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 544 Q--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 544 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
. ...++.++|++|+..+++.+||+||+.+..... .. ++.++++++.+++.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHH
Confidence 2 234567899999888888999999998764211 11 2357889999999877777663 6999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEE
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ..+.+|...
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999975 456677544
No 278
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-36 Score=343.98 Aligned_cols=209 Identities=20% Similarity=0.274 Sum_probs=171.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~----------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD----------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC----------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee
Confidence 3566777664421 012469999999999999999999999999999999999987 5799999999652
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
++.+...+.+.+|++||+.+..... ..+.++..+.++++++.+++.+..++.+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1222334566789999998754322 1233444556788999999988878776 379999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|+ +|++++.|+++
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999999999999999878999999999986 5778899999998 58999999865
Q ss_pred c
Q 043954 703 R 703 (1045)
Q Consensus 703 ~ 703 (1045)
+
T Consensus 229 e 229 (549)
T PRK13545 229 E 229 (549)
T ss_pred H
Confidence 3
No 279
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.1e-36 Score=332.28 Aligned_cols=211 Identities=18% Similarity=0.288 Sum_probs=172.5
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++. +.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3679999987632 23469999999999999999999999999999999999875 379999999986
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI-------KDSLVGIPG 612 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 612 (1045)
.. ...++.++|++|++.+++ .|++||+.... .... +.+.+.++.+||.+. .++.+++.|
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234667899999998887 49999996321 1122 235667777787643 444555444
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
..||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|+|+++|+++ ....||++++|+ +
T Consensus 137 -~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~-~ 211 (275)
T cd03289 137 -CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIE-E 211 (275)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEec-C
Confidence 5799999999999999999999999999999999999999999999874 4899999999985 345699999998 5
Q ss_pred cEEEEecCCCc
Q 043954 693 GRIIYSGMLGR 703 (1045)
Q Consensus 693 G~~~~~G~~~~ 703 (1045)
|++++.|++++
T Consensus 212 G~i~~~g~~~~ 222 (275)
T cd03289 212 NKVRQYDSIQK 222 (275)
T ss_pred CeEeecCCHHH
Confidence 89999998753
No 280
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=326.99 Aligned_cols=216 Identities=24% Similarity=0.248 Sum_probs=174.4
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEEC
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVG 538 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~ 538 (1045)
..++++|+++.++ ++++|+|+|+++++||+++|+|+||||||||+|+|+|..++. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3478999998653 246999999999999999999999999999999999987532 268999999
Q ss_pred CeeCC---c----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccc
Q 043954 539 GYPKV---Q----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD----IKDSL 607 (1045)
Q Consensus 539 g~~~~---~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 607 (1045)
|.+.. . ...++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 97642 1 1345668999999888875 99999987643221 1111222345777888887742 23333
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEE
Q 043954 608 VGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 608 vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+.||+++
T Consensus 159 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 A-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 3 47999999999999999999999999999999999999999999999976 699999999986 5778899999
Q ss_pred EEecCcEEEEecCC
Q 043954 688 LMKAGGRIIYSGML 701 (1045)
Q Consensus 688 ~l~~gG~~~~~G~~ 701 (1045)
+|+ +|+++..|+.
T Consensus 232 ~l~-~G~i~~~g~~ 244 (265)
T PRK14252 232 YMY-MGELIEFGAT 244 (265)
T ss_pred EEE-CCEEEEeCCH
Confidence 998 5999999875
No 281
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-36 Score=311.17 Aligned_cols=171 Identities=27% Similarity=0.421 Sum_probs=149.8
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++++++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4677777542 2469999999999999999999999999999999999887 579999999987642
Q ss_pred -----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 545 -----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 545 -----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
...++.++|++|++.+++..|++||+.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456789999998888889999987531 8999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++ |+
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD-GK 178 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CC
Confidence 999999999999999999999999999999999999999999887 899999999975 56668999999984 53
No 282
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=357.26 Aligned_cols=224 Identities=21% Similarity=0.360 Sum_probs=182.4
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++. .+++++|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++
T Consensus 259 ~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~ 327 (506)
T PRK13549 259 ILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPV 327 (506)
T ss_pred eEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEEC
Confidence 3778888875421 0234699999999999999999999999999999999998752 2689999999876
Q ss_pred Ccc----cccccceEeecCC---ccCCCCCHHHHHHHHhhhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 043954 543 VQK----TFARISGYCEQTD---IHSPQITVEESVKFSAWLRLPP--EIDSETKARFVEEVIETIELD-DIKDSLVGIPG 612 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 612 (1045)
... ..++.++|++|+. .+++.+||.||+.+........ ..+.++.+++++++++.+++. +..++.++
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 404 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA--- 404 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc---
Confidence 421 1234589999985 4778899999998753211100 012333445688999999996 56787774
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
.|||||||||+|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||++++|+ +
T Consensus 405 --~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~-~ 480 (506)
T PRK13549 405 --RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMH-E 480 (506)
T ss_pred --cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEE-C
Confidence 79999999999999999999999999999999999999999999999888999999999986 5778999999998 5
Q ss_pred cEEEEecCCCcc
Q 043954 693 GRIIYSGMLGRH 704 (1045)
Q Consensus 693 G~~~~~G~~~~~ 704 (1045)
|+++..|+.++.
T Consensus 481 G~i~~~~~~~~~ 492 (506)
T PRK13549 481 GKLKGDLINHNL 492 (506)
T ss_pred CEEEEEeccccC
Confidence 899999987653
No 283
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-36 Score=366.54 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=181.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+... .+++++|+||||++++||++||+||||||||||+|+|+|+.+ |.+|+|.++|.++
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEe
Confidence 47899999877421 113469999999999999999999999999999999999987 5689999998643
Q ss_pred C-------------cc---cc-cccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 043954 543 V-------------QK---TF-ARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD- 602 (1045)
Q Consensus 543 ~-------------~~---~~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~- 602 (1045)
. .. .. ++.+|||+|++ .+++.+||.||+.+...... ..+..+.+++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 00 11 23689999987 57888999999998754321 2344455567899999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHH
Q 043954 603 --IKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDV 679 (1045)
Q Consensus 603 --~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~ 679 (1045)
..+..+ .+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 356665 479999999999999999999999999999999999999999999999865 899999999986 57
Q ss_pred HHhcceEEEEecCcEEEEecCCC
Q 043954 680 FEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 680 ~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
.+.||++++|+ +|++++.|+++
T Consensus 233 ~~~adri~vl~-~G~i~~~g~~~ 254 (623)
T PRK10261 233 AEIADRVLVMY-QGEAVETGSVE 254 (623)
T ss_pred HHhCCEEEEee-CCeecccCCHH
Confidence 78999999998 58999988764
No 284
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=8.2e-36 Score=320.53 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=167.6
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC--Ce-
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVG--GY- 540 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~--g~- 540 (1045)
++++|+++.+..... ...++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888887642100 0012469999999999999999999999999999999999987 568999998 42
Q ss_pred -eCCc---cc----ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCC
Q 043954 541 -PKVQ---KT----FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIP 611 (1045)
Q Consensus 541 -~~~~---~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~ 611 (1045)
+... .. .++.++|++|++.+++.+||+||+.+..... ....+...++++++++.+++.+. .+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 147 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP--- 147 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc---
Confidence 3221 11 1345899999998999999999998754322 12333344567889999999763 45554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.||+++.+.
T Consensus 148 --~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 --ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 479999999999999999999999999999999999999999999999877999999999964 4557899998763
No 285
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-36 Score=327.19 Aligned_cols=210 Identities=26% Similarity=0.410 Sum_probs=161.9
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 5677777542 12459999999999999999999999999999999999987 579999999987542
Q ss_pred ---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCCCCCC
Q 043954 545 ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKAR-----FVEEVIETIELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 545 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~vg~~~~~~L 616 (1045)
...++.++|++|+..+++ .|++||+.+.... .......+ .+++.++.+ ....++..... .+.|
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~-~~~L 138 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIVGER-GLKL 138 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchhhcC-CCcC
Confidence 234566899999987775 6999999875311 11111111 122222322 11222222222 2479
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||++. .+ ..||++++|+ +|+++
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~-~g~i~ 214 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLK-DGRIV 214 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999876 999999999986 34 5599999998 58999
Q ss_pred EecCC
Q 043954 697 YSGML 701 (1045)
Q Consensus 697 ~~G~~ 701 (1045)
..|+.
T Consensus 215 ~~~~~ 219 (236)
T cd03253 215 ERGTH 219 (236)
T ss_pred eeCCH
Confidence 88764
No 286
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.7e-36 Score=360.39 Aligned_cols=215 Identities=23% Similarity=0.280 Sum_probs=176.6
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC-----
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGG----- 539 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g----- 539 (1045)
+++|+++++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+..|.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 5678887652 3569999999999999999999999999999999999852115789999972
Q ss_pred ------------------eeCC----------c---ccccccceEeecC-CccCCCCCHHHHHHHHhhhcCCCCCCHHHH
Q 043954 540 ------------------YPKV----------Q---KTFARISGYCEQT-DIHSPQITVEESVKFSAWLRLPPEIDSETK 587 (1045)
Q Consensus 540 ------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~ 587 (1045)
.++. . ...++.++|++|+ +.+++.+||+||+.+..... ..+.++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 2110 0 1124568999997 67888899999998865332 1233444
Q ss_pred HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 043954 588 ARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GR 666 (1045)
Q Consensus 588 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 666 (1045)
+++++++++.+||++..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 567899999999988777776 379999999999999999999999999999999999999999999999764 89
Q ss_pred EEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 667 TTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 667 tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|||++||++. .+.+.||++++|+ +|++++.|+.+
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 254 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLE-NGEIKEEGTPD 254 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEe-CCEEeeecCHH
Confidence 9999999986 4667899999998 58999888754
No 287
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-36 Score=399.74 Aligned_cols=212 Identities=23% Similarity=0.273 Sum_probs=180.2
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++|+||+++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|+++ +.+|+|++||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999998742 23459999999999999999999999999999999999988 579999999998
Q ss_pred CCc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCC
Q 043954 542 KVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIP 611 (1045)
Q Consensus 542 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~ 611 (1045)
+.. ..+|+.+++|||++.++.. ||+|||... ...+++ .+.++++..++ ++..|+.+|+.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASSA----EVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCHH----HHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4577889999999888764 999999532 122333 35566666555 45689999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 612 GQSGLSTEQRKRLTIAVELVSN-PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
|. +||||||||++|||||+++ |+||+||||||+||+++.+.|.+.|++.. +++|+|+++|+++ ....||+|++|+
T Consensus 1443 G~-nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 GS-NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred cC-cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 74 7999999999999999996 89999999999999999999999999864 4799999999975 678899999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|++++.|+++
T Consensus 1519 -~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1519 -HGAVAEMGSPR 1529 (1560)
T ss_pred -CCEEEEECCHH
Confidence 59999999874
No 288
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.2e-36 Score=325.44 Aligned_cols=210 Identities=26% Similarity=0.373 Sum_probs=165.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCch
Confidence 47889999876321 12469999999999999999999999999999999999987 5789999999875
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCCCCCCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETI--ELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ...++.++|++|++.+++ .||+||+.+...............+..+++.++.+ |+.+..+..+ +.||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~LS 152 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQLS 152 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCC
Confidence 32 223466899999987765 69999998753211000000111122356778877 6766556554 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ +.||++++|++ |+
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 225 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GR 225 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-Cc
Confidence 9999999999999999999999999999999999999999999865 689999999986 34 56999999974 65
No 289
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=330.67 Aligned_cols=222 Identities=23% Similarity=0.321 Sum_probs=175.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~---~~~~G~I~~~g 539 (1045)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 578999998652 24699999999999999999999999999999999998642 24789999999
Q ss_pred eeCCc-----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCC---------CCC-HHHHHHHHHHHHHHcCCCccc
Q 043954 540 YPKVQ-----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP---------EID-SETKARFVEEVIETIELDDIK 604 (1045)
Q Consensus 540 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~v~~~l~~l~L~~~~ 604 (1045)
.++.. ...++.++|++|+..+++ .||+||+.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87642 123467899999987776 59999999864321100 011 122345678889988885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcc
Q 043954 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFD 684 (1045)
Q Consensus 605 ~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 684 (1045)
+...... .+.||||||||++|||||+++|+||||||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.||
T Consensus 191 ~~~~~~~-~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDDN-ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcCc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 2222111 247999999999999999999999999999999999999999999999977 589999999986 5678899
Q ss_pred eEE-EEecCcEEEEecCCC
Q 043954 685 ELL-LMKAGGRIIYSGMLG 702 (1045)
Q Consensus 685 ~v~-~l~~gG~~~~~G~~~ 702 (1045)
+++ +|+ +|++++.|+.+
T Consensus 268 ~i~~~l~-~G~i~~~g~~~ 285 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDTD 285 (305)
T ss_pred EEEEEec-CCEEEEeCCHH
Confidence 975 566 59999998753
No 290
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.7e-36 Score=321.14 Aligned_cols=208 Identities=20% Similarity=0.334 Sum_probs=165.1
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|++++++. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhH
Confidence 678888886531 23469999999999999999999999999999999999877 57899999998754
Q ss_pred c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCC
Q 043954 544 Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKD-------SLVGIPGQ 613 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~~ 613 (1045)
. ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++.+++.+..+ +..+. ..
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~~ 137 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVVEE-GG 137 (221)
T ss_pred hCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhccccccccccc-CC
Confidence 2 234567899999988665 69999986431 1111 22445555555543322 22221 22
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++||++. ++ +.||++++|+ +|
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~g 213 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLD-KG 213 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEE-CC
Confidence 57999999999999999999999999999999999999999999999864 689999999985 34 5699999998 58
Q ss_pred EEEEecC
Q 043954 694 RIIYSGM 700 (1045)
Q Consensus 694 ~~~~~G~ 700 (1045)
++++.|+
T Consensus 214 ~~~~~~~ 220 (221)
T cd03244 214 RVVEFDS 220 (221)
T ss_pred eEEecCC
Confidence 9988875
No 291
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1e-35 Score=324.09 Aligned_cols=199 Identities=23% Similarity=0.372 Sum_probs=167.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 367889988652 3469999999999999999999999999999999999987 57999999872
Q ss_pred CcccccccceEeecCCccCCC--CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQ--ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
..++|++|++.+++. .|+.+++.+.. ... ++++.++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999998777665 47888765321 111 234678899999988877776 4799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999999876 899999999986 5778899999995 4 688888
Q ss_pred CCC
Q 043954 700 MLG 702 (1045)
Q Consensus 700 ~~~ 702 (1045)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 754
No 292
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3e-35 Score=328.04 Aligned_cols=252 Identities=23% Similarity=0.324 Sum_probs=207.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++++++.++ ...+++|||+++++||+.||+|.||||||||+|+|.|.+. |++|+|.++|++.
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 366788877553 4679999999999999999999999999999999999998 6899999999985
Q ss_pred Cc----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 043954 543 VQ----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 543 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 618 (1045)
.- ...+.-+|+|.|+..+.+++||.||+..+..-......+.++.+++++++.+..||+-..|.+++ .||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 42 23445689999999999999999999987643222345667777889999999999988899985 6999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
||||||.|-++|.++|++|||||||+-|-|...+++++.|++++++|+|||++||.+. |+.+.|||+-||. .|+++..
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR-~Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLR-RGKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEe-CCeEEee
Confidence 9999999999999999999999999999999999999999999999999999999997 7999999999997 5898876
Q ss_pred cC-CCc-chhHHHHHHhcCCCCCC-CCCCCCcccceeeccc
Q 043954 699 GM-LGR-HSSKLIEYFQGISGVPQ-IKANYNPATWMLEVTS 736 (1045)
Q Consensus 699 G~-~~~-~~~~~~~~f~~~~~~~~-~~~~~npad~~~~v~~ 736 (1045)
-+ ..+ ..+++.+..-+-.-..+ -.....|.+.++++-+
T Consensus 222 ~~~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~~ 262 (501)
T COG3845 222 VDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVED 262 (501)
T ss_pred ecCCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEee
Confidence 65 322 34556555543211111 1234567788887743
No 293
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9e-36 Score=309.31 Aligned_cols=171 Identities=23% Similarity=0.429 Sum_probs=149.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|++.
T Consensus 4 ~l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 36778887631 8999999999999999999999999999999999987 5799999999886
Q ss_pred Ccc----cccccceEeecCC---ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 543 VQK----TFARISGYCEQTD---IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
... ..++.++|++|+. .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------- 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------- 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------
Confidence 432 2345789999984 57888999999876320
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|+++|+++ ++.+.||++++|++ |+
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 8999999999999999999999999999999999999999999999877899999999975 57788999999984 65
No 294
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-36 Score=358.12 Aligned_cols=215 Identities=20% Similarity=0.322 Sum_probs=178.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+ ..+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 265 ~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~ 327 (510)
T PRK09700 265 VFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDI 327 (510)
T ss_pred EEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEEC
Confidence 47788887521 138999999999999999999999999999999999887 5789999999876
Q ss_pred Ccc----cccccceEeecC---CccCCCCCHHHHHHHHhhhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccc
Q 043954 543 VQK----TFARISGYCEQT---DIHSPQITVEESVKFSAWLR---LPP--E-IDSETKARFVEEVIETIELD-DIKDSLV 608 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~---~~~~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~l~L~-~~~~~~v 608 (1045)
... ..++.++|++|+ ..+++.+||+||+.+....+ ... . ......++.++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 321 224568999997 45788999999998753211 000 0 11223335678999999996 6788887
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEE
Q 043954 609 GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLL 688 (1045)
Q Consensus 609 g~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~ 688 (1045)
+ .|||||||||+|||+|+.+|++|||||||+|||+.+++.+.+.|++++++|+|||++||++. ++.+.||++++
T Consensus 408 ~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~ 481 (510)
T PRK09700 408 T-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAV 481 (510)
T ss_pred c-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 4 79999999999999999999999999999999999999999999999888999999999986 57889999999
Q ss_pred EecCcEEEEecCC
Q 043954 689 MKAGGRIIYSGML 701 (1045)
Q Consensus 689 l~~gG~~~~~G~~ 701 (1045)
|+ +|+++..++.
T Consensus 482 l~-~G~i~~~~~~ 493 (510)
T PRK09700 482 FC-EGRLTQILTN 493 (510)
T ss_pred EE-CCEEEEEecC
Confidence 98 5899988765
No 295
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-35 Score=357.09 Aligned_cols=222 Identities=19% Similarity=0.258 Sum_probs=181.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
.++++|++++++.. .+.+++|+|+||++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37789999876311 01256999999999999999999999999999999999987631 3689999999
Q ss_pred eeCCcc------cc-cccceEeecCCc--cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccc
Q 043954 540 YPKVQK------TF-ARISGYCEQTDI--HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD---IKDSL 607 (1045)
Q Consensus 540 ~~~~~~------~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~ 607 (1045)
+++... .. ++.+||++|++. +.+.+|++||+.+...... ..+..+.+++++++++.+||.+ ..++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 886321 11 246899999864 5677899999876532211 1234445667899999999975 34666
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceE
Q 043954 608 VGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDEL 686 (1045)
Q Consensus 608 vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v 686 (1045)
+ .+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+.||++
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 6 479999999999999999999999999999999999999999999999875 899999999986 567889999
Q ss_pred EEEecCcEEEEecCCC
Q 043954 687 LLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 687 ~~l~~gG~~~~~G~~~ 702 (1045)
++|+ +|++++.|+++
T Consensus 228 ~~l~-~G~i~~~g~~~ 242 (529)
T PRK15134 228 AVMQ-NGRCVEQNRAA 242 (529)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 9998 58999998764
No 296
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-35 Score=358.96 Aligned_cols=241 Identities=19% Similarity=0.243 Sum_probs=182.0
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.+.. ... . .+ ....++++|++|+++. ++++|+|+
T Consensus 288 ~~~~~~~a~~ri~~l~~~~~~~~~~----~~~---~-----~~-~~~~i~~~~v~f~y~~------------~~~~l~~i 342 (547)
T PRK10522 288 TLLSAQVAFNKLNKLALAPYKAEFP----RPQ---A-----FP-DWQTLELRNVTFAYQD------------NGFSVGPI 342 (547)
T ss_pred HHHHHHHHHHHHHHHhccccccccc----ccc---c-----cC-cCceEEEEEEEEEeCC------------CCeEEecc
Confidence 4456677888888765432211100 000 0 00 1125899999998741 23599999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||.++|+||||||||||+|+|+|.++ |.+|+|.+||++..+ ..+++.++|++|++.+++ .|++||
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n--- 416 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE--- 416 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHH-Hhhccc---
Confidence 99999999999999999999999999999987 579999999998753 346678999999877665 578777
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 652 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~ 652 (1045)
. .. ..++.++++++.+++.+..+..-|..+..+||||||||++|||||+++|++|+||||||+||+++++
T Consensus 417 ~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~ 486 (547)
T PRK10522 417 G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRR 486 (547)
T ss_pred c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 1 11 1223467888888886543321110012479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 653 IVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 653 ~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
.+.+.+.+..+ +|+|+|+++|+++ ..+.+|++++|++ |++++...
T Consensus 487 ~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e~~~ 532 (547)
T PRK10522 487 EFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN-GQLSELTG 532 (547)
T ss_pred HHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC-CEEEEecC
Confidence 99999987654 5899999999974 6789999999984 88886643
No 297
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.4e-35 Score=358.10 Aligned_cols=226 Identities=22% Similarity=0.310 Sum_probs=181.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+....+. .+-..+++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ .+|+|.++|+++
T Consensus 275 ~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i 349 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPL 349 (529)
T ss_pred cccccCcEEEeecCccc--cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEc
Confidence 36788998876311000 0000013569999999999999999999999999999999999874 489999999876
Q ss_pred Ccc------cccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 043954 543 VQK------TFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQ 613 (1045)
Q Consensus 543 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 613 (1045)
... .+++.++|++|+. .+++.+||+||+.++...+.. ..+..+.+++++++++.+++. +..++.+
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 423 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP----- 423 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----
Confidence 321 1245689999986 477889999999886533211 123334456688999999997 4567766
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
..|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.+.||++++|+ +
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~-~ 501 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLR-Q 501 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEE-C
Confidence 379999999999999999999999999999999999999999999999875 899999999986 5778899999998 5
Q ss_pred cEEEEecCC
Q 043954 693 GRIIYSGML 701 (1045)
Q Consensus 693 G~~~~~G~~ 701 (1045)
|+++..|+.
T Consensus 502 G~i~~~~~~ 510 (529)
T PRK15134 502 GEVVEQGDC 510 (529)
T ss_pred CEEEEEcCH
Confidence 899999875
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-35 Score=357.69 Aligned_cols=218 Identities=23% Similarity=0.320 Sum_probs=178.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC-Cee
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVG-GYP 541 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~-g~~ 541 (1045)
.++++|+++.+... ..+++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~ 348 (520)
T TIGR03269 279 IIKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDE 348 (520)
T ss_pred eEEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCc
Confidence 47899999876310 0123469999999999999999999999999999999999987 578999996 532
Q ss_pred ---CCc------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-----ccccc
Q 043954 542 ---KVQ------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-----IKDSL 607 (1045)
Q Consensus 542 ---~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~ 607 (1045)
... ...++.++|++|++.+++.+||+||+.+...+. ...+..+++++++++.++|.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 112456899999988889999999998754321 123333456888999999975 35666
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceE
Q 043954 608 VGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDEL 686 (1045)
Q Consensus 608 vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v 686 (1045)
+ ..|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||++. ++.+.||++
T Consensus 425 ~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 P-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 6 379999999999999999999999999999999999999999999999765 899999999986 577889999
Q ss_pred EEEecCcEEEEecCC
Q 043954 687 LLMKAGGRIIYSGML 701 (1045)
Q Consensus 687 ~~l~~gG~~~~~G~~ 701 (1045)
++|+ +|+++..|++
T Consensus 499 ~~l~-~G~i~~~g~~ 512 (520)
T TIGR03269 499 ALMR-DGKIVKIGDP 512 (520)
T ss_pred EEEE-CCEEEEECCH
Confidence 9998 5899998875
No 299
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.4e-36 Score=390.13 Aligned_cols=248 Identities=23% Similarity=0.353 Sum_probs=189.5
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
.++++..+.+|+.++++.+++.+.. .... ..+. ...++++||++.|+.. +++++|+|+
T Consensus 347 ~~~~a~~a~~ri~~ii~~~~~~~~~---~~~~--------~~~~-~~~I~~~nVsf~Y~~~----------~~~~vL~~i 404 (1466)
T PTZ00265 347 EYMKSLEATNSLYEIINRKPLVENN---DDGK--------KLKD-IKKIQFKNVRFHYDTR----------KDVEIYKDL 404 (1466)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCC---CCCc--------cCCC-CCcEEEEEEEEEcCCC----------CCCceeccc
Confidence 4567788899999988765543211 0000 0111 1258999999987421 124699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE-CCeeCCc---ccccccceEeecCCccCCCCCHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRV-GGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVK 571 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~-~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~ 571 (1045)
|+++++||++||+||||||||||+++|+|+++ |.+|+|.+ +|.++.. ..+|+.+|||+|++.+++ .||+|||.
T Consensus 405 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~ 481 (1466)
T PTZ00265 405 NFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIK 481 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHH
Confidence 99999999999999999999999999999987 67999999 4676532 345678999999988886 59999999
Q ss_pred HHhhh-cC--------CC------C------------------------C---------CHHHHHHHHHHHHHHcC----
Q 043954 572 FSAWL-RL--------PP------E------------------------I---------DSETKARFVEEVIETIE---- 599 (1045)
Q Consensus 572 ~~~~~-~~--------~~------~------------------------~---------~~~~~~~~v~~~l~~l~---- 599 (1045)
++... +. .. + . .....++.+.++++.++
T Consensus 482 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~ 561 (1466)
T PTZ00265 482 YSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDF 561 (1466)
T ss_pred hcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHH
Confidence 86310 00 00 0 0 00011234556666554
Q ss_pred ---CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCC
Q 043954 600 ---LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQP 675 (1045)
Q Consensus 600 ---L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~ 675 (1045)
|++..||.+|+.+. .||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++++ +|+|+|+++|++
T Consensus 562 i~~lp~g~dT~vg~~g~-~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrl 640 (1466)
T PTZ00265 562 VSALPDKYETLVGSNAS-KLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRL 640 (1466)
T ss_pred HHhCccccCceeCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 45667889988764 7999999999999999999999999999999999999999999999875 589999999998
Q ss_pred cHHHHHhcceEEEEec
Q 043954 676 SIDVFEAFDELLLMKA 691 (1045)
Q Consensus 676 ~~~~~~~~d~v~~l~~ 691 (1045)
+ ..+.||++++|++
T Consensus 641 s--~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 641 S--TIRYANTIFVLSN 654 (1466)
T ss_pred H--HHHhCCEEEEEeC
Confidence 6 4589999999986
No 300
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.6e-35 Score=315.92 Aligned_cols=195 Identities=26% Similarity=0.385 Sum_probs=161.6
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccC--CCCCHHHHHHHHh
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHS--PQITVEESVKFSA 574 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~ 574 (1045)
+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.. ..++.++|++|++.+. +.+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4689999999999999999999999999887 57899999998753 2345689999987653 3479999998753
Q ss_pred hhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 043954 575 WLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAI 653 (1045)
Q Consensus 575 ~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~ 653 (1045)
..... ........++.++++++.+++.+..++.++ +||||||||++|||||+.+|++++|||||+|||+.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 001112233457889999999887777764 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 654 VMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 654 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
+.+.|++++++|+|+|++||++. ++.+.||+++++ + |++++.|+.++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999999877999999999986 577889999998 5 89999998653
No 301
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.1e-36 Score=306.66 Aligned_cols=168 Identities=29% Similarity=0.473 Sum_probs=146.1
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++. +++.+++|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 46777775421 12469999999999999999999999999999999999987 579999999987643
Q ss_pred ---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 545 ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 545 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
...++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 234567899999987776 4998886 899999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ..+.||++++|++ |+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-G~ 172 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLED-GR 172 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CC
Confidence 9999999999999999999999999999999999999999877999999999975 3468999999984 65
No 302
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=9.9e-36 Score=307.96 Aligned_cols=175 Identities=27% Similarity=0.486 Sum_probs=149.5
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|++++++. .++.+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (178)
T cd03247 2 SINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSD 68 (178)
T ss_pred EEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHH
Confidence 57788876531 12369999999999999999999999999999999999987 578999999987532
Q ss_pred --ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 545 --KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 545 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
...++.++|++|++.+++ .|++||+ + ..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~-----~~LS~G~~q 105 (178)
T cd03247 69 LEKALSSLISVLNQRPYLFD-TTLRNNL-------------------------------------G-----RRFSGGERQ 105 (178)
T ss_pred HHHHHHhhEEEEccCCeeec-ccHHHhh-------------------------------------c-----ccCCHHHHH
Confidence 234566899999887765 6998886 1 369999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|++|||||+.+|++|+|||||+|||+.+++.+++.|+++. +++|+|++||++. ++ +.+|++++|+ +|++++.|
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~-~g~i~~~~ 178 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLE-NGKIIMQG 178 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999985 5899999999986 34 5799999998 58988754
No 303
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=312.73 Aligned_cols=191 Identities=23% Similarity=0.403 Sum_probs=168.7
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccccceEeecCCccCCCCCH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-------KTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
++++..+.-.++||-|+||||||||+|+|+|+.. |++|.|.+||..+.+ ...+|.+|||+||-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5677777767999999999999999999999988 679999999975422 2245789999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
+.||.|+.+.. ..+..+++++.+|++|..++.. ..|||||||||+|+|||+++|++|++|||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986421 2334788999999999999886 379999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 647 DARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|...+.+++-.|+++.++ +.-|+.+||.+. |+.+++|++++|+ +|++...|+.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le-~GkV~A~g~~e 214 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLE-NGKVKASGPLE 214 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec-CCeEEecCcHH
Confidence 999999999999999987 778999999986 7999999999998 59999999864
No 304
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.8e-35 Score=356.92 Aligned_cols=255 Identities=18% Similarity=0.238 Sum_probs=184.1
Q ss_pred CCCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccc
Q 043954 415 PKMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHD 494 (1045)
Q Consensus 415 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~ 494 (1045)
...+++..+.+|+.++.+.+.+++.....+......... .+.....++++|++|.++... ..++++|+|
T Consensus 292 ~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~~~--------~~~~~~l~~ 360 (555)
T TIGR01194 292 PILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLA---HDKSVDSIELKDVHMNPKAPE--------GSEGFALGP 360 (555)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccccccc---cCCCCceEEEEEEEEEeCCCC--------CCcCceecc
Confidence 356677888999988764311110000000000000000 001124689999999875210 012369999
Q ss_pred ccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHH
Q 043954 495 ITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVK 571 (1045)
Q Consensus 495 vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~ 571 (1045)
+|+++++||.++|+||||||||||+|+|+|.++ |.+|+|.+||.++.+ ...++.++||+|++.++. .|++||..
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~ 437 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG 437 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhh-hhhhcccc
Confidence 999999999999999999999999999999987 679999999998754 345678999999877664 58888831
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 043954 572 FSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLV-GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARA 650 (1045)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~ 650 (1045)
+ . ..++.++++++.+++.+..+... |......||||||||++|||||+++|++++||||||+||+.+
T Consensus 438 -------~-~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~ 505 (555)
T TIGR01194 438 -------E-H----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAF 505 (555)
T ss_pred -------c-c----hhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 1 1 12334677888888765433221 211124799999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 651 AAIVMRAVK-NVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 651 ~~~i~~~l~-~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
++.+.+.+. +++++|+|+|++||+++ ..+.+|++++|+ +|++++.
T Consensus 506 ~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~-~G~i~~~ 551 (555)
T TIGR01194 506 KRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLA-AGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEE-CCEEEEe
Confidence 999998664 45566999999999975 578999999998 5888754
No 305
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.5e-35 Score=352.70 Aligned_cols=222 Identities=18% Similarity=0.327 Sum_probs=180.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+.. .+++.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++
T Consensus 257 ~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~ 325 (500)
T TIGR02633 257 ILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPV 325 (500)
T ss_pred eEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEEC
Confidence 4778888864310 0134699999999999999999999999999999999998762 2589999999876
Q ss_pred Cc----ccccccceEeecCC---ccCCCCCHHHHHHHHhh--hcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 043954 543 VQ----KTFARISGYCEQTD---IHSPQITVEESVKFSAW--LRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPG 612 (1045)
Q Consensus 543 ~~----~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~ 612 (1045)
.. ...++.++|++|+. .+++.+||+||+.++.. ............++.++++++.+++.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 402 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG--- 402 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc---
Confidence 42 12345689999985 57889999999987532 110001223334456889999999964 5677774
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
.||||||||++|||||+.+|++|+|||||+|||+.+++.+++.|++++++|+|||++||++. ++.+.||++++|+ +
T Consensus 403 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~-~ 478 (500)
T TIGR02633 403 --RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIG-E 478 (500)
T ss_pred --cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-C
Confidence 79999999999999999999999999999999999999999999999888999999999986 6788999999998 5
Q ss_pred cEEEEecCCC
Q 043954 693 GRIIYSGMLG 702 (1045)
Q Consensus 693 G~~~~~G~~~ 702 (1045)
|+++..++.+
T Consensus 479 G~i~~~~~~~ 488 (500)
T TIGR02633 479 GKLKGDFVNH 488 (500)
T ss_pred CEEEEEEccc
Confidence 8999877654
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=316.56 Aligned_cols=229 Identities=25% Similarity=0.380 Sum_probs=193.9
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
++-++.+|+...++.+.++-.. ..+...++++||+++++||.++|+|.||||||||-.+|.++.++ +|+|.++|+
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~ 348 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQ 348 (534)
T ss_pred CceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCc
Confidence 4567889998888776543221 12345799999999999999999999999999999999998863 599999999
Q ss_pred eCCc------ccccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCC
Q 043954 541 PKVQ------KTFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIP 611 (1045)
Q Consensus 541 ~~~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~ 611 (1045)
++.. ...|+.+-.|+||+ .+.|.+||.|-+.-+.....+ ..+.+++.+++.++++.+||+. ..++.
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY---- 423 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY---- 423 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC----
Confidence 8753 23456788999997 588999999999988766543 4678889999999999999974 33433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+++.|||||||++||||++.+|++++||||||+||...+.+|+++|+++.++ |.+-++++||+. -+-.+||+++||.
T Consensus 424 -PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~ 501 (534)
T COG4172 424 -PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR 501 (534)
T ss_pred -CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe
Confidence 3689999999999999999999999999999999999999999999999765 899999999986 4678899999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|++|++|+.+
T Consensus 502 -~GkiVE~G~~~ 512 (534)
T COG4172 502 -DGKIVEQGPTE 512 (534)
T ss_pred -CCEEeeeCCHH
Confidence 59999999863
No 307
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=352.93 Aligned_cols=206 Identities=21% Similarity=0.332 Sum_probs=173.2
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc----ccccccceEeecCC---ccCC
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ----KTFARISGYCEQTD---IHSP 562 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~----~~~~~~~~~v~q~~---~~~~ 562 (1045)
.+++|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 48999999999999999999999999999999999987 578999999987532 12245689999985 4888
Q ss_pred CCCHHHHHHHHhhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEE
Q 043954 563 QITVEESVKFSAWLRL-PPE--IDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIF 638 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~ill 638 (1045)
.+|+.||+.+...... ... ......++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEE
Confidence 8999999987532110 000 12223345678899999994 67788874 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCcc
Q 043954 639 MDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRH 704 (1045)
Q Consensus 639 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~ 704 (1045)
|||||+|||+.++.++++.|++++++|.|||++|||+. ++.+.||++++|+ +|++++.|+.++.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEccccC
Confidence 99999999999999999999999888999999999986 6788999999998 5899999987653
No 308
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4e-35 Score=351.86 Aligned_cols=204 Identities=22% Similarity=0.345 Sum_probs=172.2
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccccceEeecCC---ccCCC
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK----TFARISGYCEQTD---IHSPQ 563 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 563 (1045)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++... ..++.++|++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 7999999999999999999999999999999999987 5789999999876421 1345689999985 57788
Q ss_pred CCHHHHHHHHhhhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 043954 564 ITVEESVKFSAWLRLP---PEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFM 639 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illL 639 (1045)
+||+||+.+....... .....++.++.++++++.+++. +..++.++ .|||||||||+|||||+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875311100 0122333345688999999995 66787774 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 640 DEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 640 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+.||++++|+ +|+++..|+.++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 481 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMH-EGRISGEFTREQ 481 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 9999999999999999999999888999999999986 6788999999998 589999998764
No 309
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.3e-35 Score=307.45 Aligned_cols=165 Identities=31% Similarity=0.509 Sum_probs=141.4
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 565 (1045)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 469999999999999999999999999999999999987 579999999987642 123345677776
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+++.+++.+..++.+ +.||||||||++|||||+.+|++++|||||+|
T Consensus 81 ----------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 455567765555554 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 646 LDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|+ +|++++.|
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLK-DGRIVAQG 180 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999876 899999999986 5678999999998 58887654
No 310
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.2e-35 Score=308.92 Aligned_cols=183 Identities=25% Similarity=0.324 Sum_probs=153.5
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|.....|.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 5677777542 246999999999999999999999999999999999984211578999999998643
Q ss_pred c---cc-cccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 545 K---TF-ARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 545 ~---~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
. .. ++.++|++|++.+++..|+++++. ... +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~~-----~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YVN-----EGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hcc-----ccCCHHH
Confidence 2 12 345899999988888888877650 000 2699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHH-hcceEEEEecCcEEEEec
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFE-AFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~~gG~~~~~G 699 (1045)
|||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+ .+|++++|+ +|++++.|
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~-~G~i~~~~ 187 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLY-DGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999877899999999986 4555 799999998 58999998
Q ss_pred CC
Q 043954 700 ML 701 (1045)
Q Consensus 700 ~~ 701 (1045)
+.
T Consensus 188 ~~ 189 (200)
T cd03217 188 DK 189 (200)
T ss_pred cH
Confidence 53
No 311
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4e-35 Score=311.16 Aligned_cols=198 Identities=19% Similarity=0.261 Sum_probs=159.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEh
Confidence 4778888886531 12469999999999999999999999999999999999987 5799999999875
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
.. ...++.++|++|++.+++ .|++||+.+.. ....+ .+.+.++ .+..+ ..||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~-------~~~~~-----~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR-------VSEGG-----LNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh-------ccCCC-----CcCCHH
Confidence 32 234567899999987776 59999996521 11221 1333333 22222 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++. ++ ..+|++++|+ +|+++..|
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~-~g~i~~~g 205 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMD-AGEVKEYD 205 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999999985 5899999999986 34 4599999998 58998877
Q ss_pred C
Q 043954 700 M 700 (1045)
Q Consensus 700 ~ 700 (1045)
+
T Consensus 206 ~ 206 (207)
T cd03369 206 H 206 (207)
T ss_pred C
Confidence 5
No 312
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.8e-35 Score=352.68 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=174.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++. ++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCccc
Confidence 367899988652 2459999999999999999999999999999999999887 5789999999764
Q ss_pred Cc---ccccccceEeecCCcc--C------CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 043954 543 VQ---KTFARISGYCEQTDIH--S------PQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIP 611 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 611 (1045)
.. ...++.++|++|++.. + ..+|++|++.+. .+.+++++++++.++|.+..++.++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-- 134 (490)
T PRK10938 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK-- 134 (490)
T ss_pred ccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc--
Confidence 32 2234558999997542 1 146888887431 1123457889999999888888774
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.||++++|+
T Consensus 135 ---~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~- 209 (490)
T PRK10938 135 ---YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLA- 209 (490)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEE-
Confidence 79999999999999999999999999999999999999999999999888999999999986 5778899999998
Q ss_pred CcEEEEecCCC
Q 043954 692 GGRIIYSGMLG 702 (1045)
Q Consensus 692 gG~~~~~G~~~ 702 (1045)
+|+++..|+.+
T Consensus 210 ~G~i~~~~~~~ 220 (490)
T PRK10938 210 DCTLAETGERE 220 (490)
T ss_pred CCEEEEeCCHH
Confidence 58999998754
No 313
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.1e-35 Score=325.93 Aligned_cols=211 Identities=20% Similarity=0.273 Sum_probs=164.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++. .++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+ +.+|+|.++|+++
T Consensus 19 ~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 85 (257)
T cd03288 19 EIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDI 85 (257)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEh
Confidence 5789999987631 12469999999999999999999999999999999999987 5799999999886
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-------IKDSLVGIPG 612 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 612 (1045)
.. ...++.++|++|++.+++ .|++||+.... ....+ .+++.++.+++.+ ..++.++..
T Consensus 86 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~- 153 (257)
T cd03288 86 SKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDD----RLWEALEIAQLKNMVKSLPGGLDAVVTEG- 153 (257)
T ss_pred hhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHH----HHHHHHHHhCcHHHHhhcccccCcEeccC-
Confidence 43 234567899999987766 59999985321 11111 1222333223322 223333322
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.++++. ++.|+|++||++. ++ ..||++++|+ +
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~-~~~dri~~l~-~ 229 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TI-LDADLVLVLS-R 229 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HH-HhCCEEEEEE-C
Confidence 25799999999999999999999999999999999999999999999874 4899999999986 34 4599999998 5
Q ss_pred cEEEEecCCC
Q 043954 693 GRIIYSGMLG 702 (1045)
Q Consensus 693 G~~~~~G~~~ 702 (1045)
|+++..|+++
T Consensus 230 G~i~~~g~~~ 239 (257)
T cd03288 230 GILVECDTPE 239 (257)
T ss_pred CEEEEeCCHH
Confidence 9999998753
No 314
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-34 Score=290.01 Aligned_cols=228 Identities=25% Similarity=0.351 Sum_probs=191.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++||++++. ++++||++||++|++||+.+||||||||||||.++|+|...+.+++|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478899998773 12589999999999999999999999999999999999887768899999999987
Q ss_pred Cc----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCC
Q 043954 543 VQ----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP-EIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGL 616 (1045)
Q Consensus 543 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~L 616 (1045)
.. +..+.-+..-+|.|.-+|..|+.+.|+.+.+.+... .. ..+..+.+++.++.+++.+ ..++.+. .++
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GF 145 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVN----EGF 145 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccC----CCc
Confidence 53 223445667789999999999999999876543221 11 2334556888999999976 6777775 479
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhc--ceEEEEecCcE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAF--DELLLMKAGGR 694 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~--d~v~~l~~gG~ 694 (1045)
|||||||..|+..++.+|++.+||||-||||..+-+.|.+.+++++++|++++++||.. .+.+.. |++.+|. +||
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~-~Gr 222 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLY-DGR 222 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEE-CCE
Confidence 99999999999999999999999999999999999999999999999999999999985 467776 9999998 599
Q ss_pred EEEecCCCcchhHHHHHHhcC
Q 043954 695 IIYSGMLGRHSSKLIEYFQGI 715 (1045)
Q Consensus 695 ~~~~G~~~~~~~~~~~~f~~~ 715 (1045)
|+..|.+ ++.+.++..
T Consensus 223 Iv~sG~~-----el~~~le~~ 238 (251)
T COG0396 223 IVKSGDP-----ELAEELEEK 238 (251)
T ss_pred EEecCCH-----HHHHHHHHh
Confidence 9999986 466666654
No 315
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-34 Score=348.23 Aligned_cols=204 Identities=20% Similarity=0.238 Sum_probs=170.0
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccccceEeecCC---ccCCC
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK----TFARISGYCEQTD---IHSPQ 563 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 563 (1045)
+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++... ..++.++|++|+. .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5999999999999999999999999999999999887 5689999999876431 1234689999974 47888
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 043954 564 ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP 642 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP 642 (1045)
+|+.||+......+..........++.++++++.+++. +..++.++ .|||||||||+|||||+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111010011222345688999999997 67788774 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 643 TSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 643 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
|+|||+.+++.+.+.|++++++|.|+|++||++. ++.+.||++++|+ +|+++..|.+++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 9999999999999999999888999999999986 6788999999998 589999887754
No 316
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.5e-35 Score=305.19 Aligned_cols=191 Identities=18% Similarity=0.275 Sum_probs=157.9
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++. ++.+++ +|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 56788887652 233554 999999999999999999999999999999887 57999999998764
Q ss_pred cccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 043954 544 QKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 544 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 623 (1045)
... ++.++|++|+..+++.+||+||+.+..... . ..+.++++++.+++.+..++.+ +.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHH
Confidence 322 345799999888888899999998754322 1 1234677889999987777765 4799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceE
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDEL 686 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v 686 (1045)
++|||||+++|++++|||||+|||+.+++.+.+.|++..++|+|+|+++|+++ ..+.+|-+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 99999999999999999999999999999999999877777999999999976 34556654
No 317
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.7e-35 Score=384.08 Aligned_cols=211 Identities=20% Similarity=0.283 Sum_probs=179.8
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++|+||+++|+. +.+++|+|||++|+|||.+||+|+||||||||+++|.|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46899999998742 23579999999999999999999999999999999999875 47999999999
Q ss_pred CCc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCC
Q 043954 542 KVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIP 611 (1045)
Q Consensus 542 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~ 611 (1045)
+.. ...|+.++||||++.+++. ||||||.... ..++ +.+.++++.++| ++..|+.+|+.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 754 3567889999999988875 9999995321 1233 235667776665 45689999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
|. +||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1351 G~-nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~- 1425 (1490)
T TIGR01271 1351 GY-VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIE- 1425 (1490)
T ss_pred CC-cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-
Confidence 64 799999999999999999999999999999999999999999999864 4799999999975 567899999998
Q ss_pred CcEEEEecCCC
Q 043954 692 GGRIIYSGMLG 702 (1045)
Q Consensus 692 gG~~~~~G~~~ 702 (1045)
+|++++.|++.
T Consensus 1426 ~G~ivE~g~p~ 1436 (1490)
T TIGR01271 1426 GSSVKQYDSIQ 1436 (1490)
T ss_pred CCEEEEeCCHH
Confidence 59999999874
No 318
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-35 Score=298.88 Aligned_cols=217 Identities=23% Similarity=0.357 Sum_probs=181.0
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
.-++++|+++.+ ++++||+|+|++|+|||..+|+|||||||||||++++|..+ |.+|.+.+.|+.
T Consensus 30 ~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~--pssg~~~~~G~~ 94 (257)
T COG1119 30 PLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP--PSSGDVTLLGRR 94 (257)
T ss_pred ceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC--CCCCceeeeeee
Confidence 457899999864 45789999999999999999999999999999999999887 459999999987
Q ss_pred CCc----ccccccceEeec--CCccCCCCCHHHHHHHH--hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 043954 542 KVQ----KTFARISGYCEQ--TDIHSPQITVEESVKFS--AWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQ 613 (1045)
Q Consensus 542 ~~~----~~~~~~~~~v~q--~~~~~~~lTv~e~l~~~--~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 613 (1045)
... .+.|+.+|+|.- +..+.+..+|+|-+.-+ +..........++..+++..+++.+|+.+..|+..+
T Consensus 95 ~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~---- 170 (257)
T COG1119 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG---- 170 (257)
T ss_pred ccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh----
Confidence 532 456788999963 23445577888877522 222222212234456678999999999999999885
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT--GRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
.||-||||||-|||||+++|++||||||++|||...++.+.+.|.+++.. +.++|++||+.. |+-..++++++++
T Consensus 171 -~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~- 247 (257)
T COG1119 171 -SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK- 247 (257)
T ss_pred -hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEee-
Confidence 79999999999999999999999999999999999999999999999865 789999999986 7888999999998
Q ss_pred CcEEEEecC
Q 043954 692 GGRIIYSGM 700 (1045)
Q Consensus 692 gG~~~~~G~ 700 (1045)
+|+++++|.
T Consensus 248 ~g~v~~~g~ 256 (257)
T COG1119 248 EGEVVAQGK 256 (257)
T ss_pred CCceeeccc
Confidence 589999874
No 319
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.1e-34 Score=296.19 Aligned_cols=164 Identities=26% Similarity=0.369 Sum_probs=141.5
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ +++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 2 ~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~---- 63 (166)
T cd03223 2 ELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG---- 63 (166)
T ss_pred EEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC----
Confidence 5677777542 12469999999999999999999999999999999999887 57899999873
Q ss_pred ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 043954 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRL 624 (1045)
Q Consensus 545 ~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv 624 (1045)
+.++|++|++.+ +..|++||+.+. .. +.||||||||+
T Consensus 64 ----~~i~~~~q~~~~-~~~tv~~nl~~~---------------------------------~~-----~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYL-PLGTLREQLIYP---------------------------------WD-----DVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCcc-ccccHHHHhhcc---------------------------------CC-----CCCCHHHHHHH
Confidence 458999998765 467999998642 11 36999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 625 TIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 625 ~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
+|||||+.+|++++|||||+|||+.+++.+.+.|+++ ++|+|++||++. ..+.||++++|+++|.
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 9999999999999999999999999999999999886 689999999975 4579999999987763
No 320
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.1e-34 Score=327.45 Aligned_cols=184 Identities=29% Similarity=0.405 Sum_probs=160.0
Q ss_pred EecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHH
Q 043954 507 LMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSE 585 (1045)
Q Consensus 507 i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 585 (1045)
|+||||||||||+|+|+|+.+ |.+|+|.++|+++... ..++.++|++|+..+++.+||+||+.++...+ ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999987 5799999999886432 23467899999999999999999999875432 12344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 043954 586 TKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT- 664 (1045)
Q Consensus 586 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~- 664 (1045)
+.+++++++++.++|.+..++.+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 44567889999999998888876 479999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 665 GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 665 g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|+|+|++||++. ++.+.||++++|+ +|+++..|+++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~-~G~i~~~g~~~ 186 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMR-KGKIAQIGTPE 186 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 899999999986 6788999999998 59999999864
No 321
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.6e-34 Score=294.08 Aligned_cols=157 Identities=27% Similarity=0.412 Sum_probs=137.2
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~ 66 (163)
T cd03216 2 ELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSF 66 (163)
T ss_pred EEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCc
Confidence 5778887652 2469999999999999999999999999999999999987 579999999987543
Q ss_pred c----cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 545 K----TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 545 ~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
. ..++.++|++| |||||
T Consensus 67 ~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G~ 87 (163)
T cd03216 67 ASPRDARRAGIAMVYQ-----------------------------------------------------------LSVGE 87 (163)
T ss_pred CCHHHHHhcCeEEEEe-----------------------------------------------------------cCHHH
Confidence 1 12345677776 89999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|+++|++. ++.+.+|++++|+ +|++++
T Consensus 88 ~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~ 162 (163)
T cd03216 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLR-DGRVVG 162 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEe
Confidence 99999999999999999999999999999999999999999877999999999975 4677899999998 588764
No 322
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=354.46 Aligned_cols=455 Identities=17% Similarity=0.171 Sum_probs=288.4
Q ss_pred hhccchhhhhh-hcCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043954 218 TITRLPVVYRQ-RSFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLF 296 (1045)
Q Consensus 218 ~~~er~vf~rE-~~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i 296 (1045)
...||.-=.|+ ..-.=.++++|.++..+.|+.+.++..+++..+++..- -....++...++..++....+..+.++.
T Consensus 319 li~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~ 396 (885)
T KOG0059|consen 319 LILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYIL 396 (885)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33455444444 33444689999999999999999988887776666543 2233456777778888888999999999
Q ss_pred HHccCchHHHHHHHHHHHHHHHhhh----cceeCCCCCCccchhhhhhChhHHHHHHHhh----hccCCCcccccCCCcc
Q 043954 297 ASTFQTMVIATTVGSLALVLMFLFG----GFILPRSSLPPWLSWGFWISLMTYGEIGISL----NEFLAPRWQKAIAENT 368 (1045)
Q Consensus 297 ~a~~~~~~~A~~i~~~~~~~~~lf~----Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~----nef~~~~~~~~~~~~~ 368 (1045)
+.++++...|..+..++.....+.+ ..+....+.|..+.|...+.|...-+...+. ..-.... .+......
T Consensus 397 s~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 475 (885)
T KOG0059|consen 397 SFIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLN-LNDGMSLE 475 (885)
T ss_pred HHHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc-chhhhhhh
Confidence 9999999999888776665544322 2222345556555555555444444422221 1100000 00000000
Q ss_pred ccccceEeccCccccccccchhhHHHHH--HHHHHHHH-HHHHHHhcCCCCCcccccchhhhccccCCcccCCCCCCCCC
Q 043954 369 TIGRYTLTSHGLNFESYFYWISVAALIG--FMILFDLG-FILALTYLKPPKMSRAIISKERFSQLQGKEDEESNRPAFPH 445 (1045)
Q Consensus 369 ~~G~~~L~~~g~~~~~~~~w~~i~ili~--~~l~~~~~-~~l~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 445 (1045)
..+.. .........|........ ........ ..+.+.... ....+.....++... ..++....+.....
T Consensus 476 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~-~~~~~~~~~~~~~~~--~~~~~~~e~~~v~~ 547 (885)
T KOG0059|consen 476 VLGND-----ESFYTLLLEWLLPLIGRRYLALVTEGVKDDLFFLLIFV-PFKRRMRALTQNMLK--GFEPVEVEKLDVAR 547 (885)
T ss_pred hhccc-----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccccccccccccC--CCcCcchhhHHHHH
Confidence 00110 000000112333111111 11111011 000000000 000000000000000 00000000000000
Q ss_pred CCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 446 TKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+................+..++++..+.. .++ +++++|+.+++||+.+++|+|||||||++|+|+|.
T Consensus 548 -e~~~v~~~~~~~~~~~~~~~~~L~k~y~~-----------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~ 614 (885)
T KOG0059|consen 548 -ERNRVETLLFRSSYSSALVLNNLSKVYGG-----------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE 614 (885)
T ss_pred -HHHhhhhhhhcccccceEEEcceeeeecc-----------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCC
Confidence 00000000000001123556666654421 112 99999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEECCeeCCc----ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 043954 526 KTGGIIQGEIRVGGYPKVQ----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD 601 (1045)
Q Consensus 526 ~~~~~~~G~I~~~g~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~ 601 (1045)
.+ |++|++.++|.++.. .+.++.+||+||+|.+.+.+|.+|++.+.++++. +..++.++.++..++.++|.
T Consensus 615 ~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~ 689 (885)
T KOG0059|consen 615 TK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLG 689 (885)
T ss_pred cc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCCh
Confidence 87 679999999988643 2256789999999999999999999999998873 44555566699999999999
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHH
Q 043954 602 DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFE 681 (1045)
Q Consensus 602 ~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~ 681 (1045)
+..|+.++ .+|||+|||+++|.||+.+|++++|||||+|+||.+++.+++.++++.++|+.+|++||..+ |...
T Consensus 690 ~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~Ea 763 (885)
T KOG0059|consen 690 PYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEA 763 (885)
T ss_pred hhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHH
Confidence 99999985 79999999999999999999999999999999999999999999999998889999999875 7888
Q ss_pred hcceEEEEecCcEEEEecCCCcchhHHHHHH
Q 043954 682 AFDELLLMKAGGRIIYSGMLGRHSSKLIEYF 712 (1045)
Q Consensus 682 ~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f 712 (1045)
+|||+.+|. .|++..-|++ +++...|
T Consensus 764 LCtR~aImv-~G~l~ciGs~----q~LKsrf 789 (885)
T KOG0059|consen 764 LCTRTAIMV-IGQLRCIGSP----QELKSRY 789 (885)
T ss_pred Hhhhhheee-cCeeEEecCh----HHHHhhc
Confidence 999999998 4899999987 3454444
No 323
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.1e-35 Score=308.11 Aligned_cols=195 Identities=25% Similarity=0.386 Sum_probs=149.0
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 2 ~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----- 66 (204)
T cd03250 2 SVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----- 66 (204)
T ss_pred EEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC-----
Confidence 5778887652100 001369999999999999999999999999999999999887 5799999998
Q ss_pred ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCC
Q 043954 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-------IKDSLVGIPGQSGLS 617 (1045)
Q Consensus 545 ~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~LS 617 (1045)
.++|++|++.++ ..|++||+.+... ...+. ..+.++.+++.+ ..++..... ...||
T Consensus 67 -----~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~lS 129 (204)
T cd03250 67 -----SIAYVSQEPWIQ-NGTIRENILFGKP------FDEER----YEKVIKACALEPDLEILPDGDLTEIGEK-GINLS 129 (204)
T ss_pred -----EEEEEecCchhc-cCcHHHHhccCCC------cCHHH----HHHHHHHcCcHHHHHhccCcccceecCC-CCcCC
Confidence 479999998776 5699999987432 11111 222233333321 122233322 25799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMR-AVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||++|||||+.+|++++|||||+|||+.+++.+.+ +++++.++|+|+|++||++. .+.. +|++++|++ |+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~-G~ 204 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDN-GR 204 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeC-CC
Confidence 999999999999999999999999999999999999998 56777666899999999975 3444 999999984 53
No 324
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.8e-34 Score=309.56 Aligned_cols=200 Identities=19% Similarity=0.243 Sum_probs=158.7
Q ss_pred cccccccee-----cCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCC
Q 043954 491 LLHDITGAF-----RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 491 iL~~vs~~i-----~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 565 (1045)
.++|+++++ ++||+++|+||||||||||+|+|+|..+ |.+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 555666555 4799999999999999999999999987 57899999984 4789999887777899
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
|+|++.+...... . .....+++++.+++.+..++.++ .||||||||++|||||+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 1 11235678899999887777764 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE--EecCCCcchhHHHHHHhcC
Q 043954 646 LDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII--YSGMLGRHSSKLIEYFQGI 715 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~--~~G~~~~~~~~~~~~f~~~ 715 (1045)
||+.++..+.+.|++++++ |+|+|++||++. .+...||++++|++ +..+ ..+++....+.+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 9999999999999999764 899999999975 56678999999963 3222 2333333333556666554
No 325
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.8e-34 Score=307.29 Aligned_cols=188 Identities=26% Similarity=0.354 Sum_probs=148.3
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccccceEeecCCccC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-------KTFARISGYCEQTDIHS 561 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 561 (1045)
+++++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 569999999999999999999999999999999999987 568999999986532 11345689999988776
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 043954 562 PQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIK-------DSLVGIPGQSGLSTEQRKRLTIAVELVSNP 634 (1045)
Q Consensus 562 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p 634 (1045)
..|++||+.+... ...+ ..+++++.+++.+.. ++..+.. ...||||||||++|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGER-GINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCcccC-CCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999987431 1111 123445555553321 1222221 2479999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 635 SIIFMDEPTSGLDARAAAIVMR--AVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 635 ~illLDEPtsgLD~~~~~~i~~--~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
++|+|||||+|||+.++..+++ .++.+.++|+|+|++||+++ .+ ..+|++++|++ |
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-G 217 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD-G 217 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC-C
Confidence 9999999999999999999998 67776666899999999986 34 67999999974 5
No 326
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-34 Score=295.68 Aligned_cols=166 Identities=29% Similarity=0.511 Sum_probs=141.9
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+.. ++..+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~ 68 (171)
T cd03228 2 EFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRD 68 (171)
T ss_pred EEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhh
Confidence 46777775421 11369999999999999999999999999999999999987 568999999987542
Q ss_pred ---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 545 ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 545 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
...++.++|++|++.+++ .|+.||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~ 102 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQR 102 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHH
Confidence 234566899999886665 5888876 899999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++||++. ++.. ||++++|++ |
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~-g 170 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDD-G 170 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcC-C
Confidence 999999999999999999999999999999999999999864 799999999986 4544 999999974 5
No 327
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=347.12 Aligned_cols=218 Identities=24% Similarity=0.369 Sum_probs=185.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.+||+++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 47899999876421 112469999999999999999999999999999999999987 5799999999986
Q ss_pred Ccc---c----ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 543 VQK---T----FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
... . .++.++|++|+..+++.+|+.||+.+..... ....++.++++.++++.+++.+..|+..+ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----Q 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----c
Confidence 431 1 1356899999999999999999998764322 12334556678899999999888777764 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||||||||++|||||+++|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||++. ..+.||++++|+ +|++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~-~G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIR-DGEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999877999999999975 456799999998 5999
Q ss_pred EEecCCC
Q 043954 696 IYSGMLG 702 (1045)
Q Consensus 696 ~~~G~~~ 702 (1045)
++.|+.+
T Consensus 222 ~~~g~~~ 228 (648)
T PRK10535 222 VRNPPAQ 228 (648)
T ss_pred EeecCcc
Confidence 9999875
No 328
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-34 Score=297.58 Aligned_cols=202 Identities=27% Similarity=0.408 Sum_probs=172.1
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccccceEee-cCCccCCCCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ--KTFARISGYCE-QTDIHSPQIT 565 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~lT 565 (1045)
.++++|+||+|++|++++++|||||||||+||+|+|... |++|.|.++|.+... +.+-+.+++|. |...+...+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 458999999999999999999999999999999999887 679999999987432 23345566665 3334444455
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.|.+.....+. +++.++-+++.+.+.+.++|++..+.++ +.||-|||.|+.||.+|+++|+||+|||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 777776554443 4566777788999999999998888887 58999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||..++..|.+.|++..++ +.||+.+||+.+ ++.++||||++++ .|+++|+|+..
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~-~Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLID-QGQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEee-CCcEeecccHH
Confidence 9999999999999998754 899999999987 7999999999998 59999999863
No 329
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-33 Score=311.44 Aligned_cols=198 Identities=20% Similarity=0.356 Sum_probs=156.1
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|
T Consensus 38 ~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g-- 98 (282)
T cd03291 38 NNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG-- 98 (282)
T ss_pred CeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC--
Confidence 45789999872 1459999999999999999999999999999999999987 5789999988
Q ss_pred CCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCC
Q 043954 542 KVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-------IKDSLVGIPGQS 614 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~ 614 (1045)
.++|++|++.+++ .||+||+.+.... ... .+.+.++.+++.+ ..++.++.. ..
T Consensus 99 --------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~~-~~ 158 (282)
T cd03291 99 --------RISFSSQFSWIMP-GTIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGEG-GI 158 (282)
T ss_pred --------EEEEEeCcccccc-cCHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecCC-CC
Confidence 2799999887776 4999999864211 111 1122333333322 223333322 24
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV-KNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ +++. +++|+|++||++. + ...||++++|+ +|
T Consensus 159 ~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~-~~~~d~i~~l~-~G 234 (282)
T cd03291 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-H-LKKADKILILH-EG 234 (282)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-H-HHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999865 5554 5799999999986 3 46899999998 58
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
++++.|++.
T Consensus 235 ~i~~~g~~~ 243 (282)
T cd03291 235 SSYFYGTFS 243 (282)
T ss_pred EEEEECCHH
Confidence 999998753
No 330
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=284.05 Aligned_cols=216 Identities=25% Similarity=0.362 Sum_probs=182.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC-ee
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGG-YP 541 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g-~~ 541 (1045)
.++.+|++++. +...+|+|+||++.+||+-+|+|||||||||+|++|+|..+ |.+|++.++| .+
T Consensus 5 iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 46677777754 34569999999999999999999999999999999999887 5799999999 56
Q ss_pred CCcc----cccccceEeecCCccCCCCCHHHHHHHHhhhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 043954 542 KVQK----TFARISGYCEQTDIHSPQITVEESVKFSAWLRLP------PEIDSETKARFVEEVIETIELDDIKDSLVGIP 611 (1045)
Q Consensus 542 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 611 (1045)
+... -.+.-+|--+|.+..|..+||+|||+.+.....+ .. ...+.+++++++++..||.+..|...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r-~~~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFAR-LRAEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhh-cChhHHHHHHHHHHHcccchhhhhhhh--
Confidence 5432 1234578889999999999999999987542211 01 123345679999999999999998875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
.||.||||++.|+..++++|++|+||||++|+-.+...+.-++|+++++ +++|+++-||.. -+-+++|+|-+|++
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~ 221 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE 221 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec
Confidence 6999999999999999999999999999999999999999999999976 689999999975 57788999999985
Q ss_pred CcEEEEecCCC
Q 043954 692 GGRIIYSGMLG 702 (1045)
Q Consensus 692 gG~~~~~G~~~ 702 (1045)
|.+..+|+.+
T Consensus 222 -G~VL~EGsld 231 (249)
T COG4674 222 -GSVLAEGSLD 231 (249)
T ss_pred -cceeecccHH
Confidence 8999999875
No 331
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-32 Score=341.73 Aligned_cols=249 Identities=20% Similarity=0.254 Sum_probs=194.7
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
......|-||+.+-.+.++|.+-......++ + .= +.+..++|+|++.+|.. +...+|||||
T Consensus 1100 lEn~m~SVERv~eY~~~~~E~p~~~~~~~pp---~----~W-P~~G~I~f~~~~~RYrp-----------~lp~VLk~is 1160 (1381)
T KOG0054|consen 1100 LENNMVSVERVLEYTDIPSEAPLEIEESRPP---P----SW-PSKGEIEFEDLSLRYRP-----------NLPLVLKGIS 1160 (1381)
T ss_pred HHhcchhhhHHHHHhcCCCCCCCCCcCCCCC---C----CC-CCCCeEEEEEeEEEeCC-----------CCcchhcCce
Confidence 4455678899988776554411110000000 0 01 13457899999987742 3457999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
++|+|||.+||+|+.|||||||+++|-++.. +.+|+|.+||.++.+ .+.|+.++.+|||+.+|. .|||.||.=.
T Consensus 1161 ~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDPf 1237 (1381)
T KOG0054|consen 1161 FTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDPF 1237 (1381)
T ss_pred EEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-CccccccCcc
Confidence 9999999999999999999999999999877 578999999999765 467888999999998876 4999998511
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
.+.++++ +.++++..+ +++..|+.+.+.|. ++|-||||.+++||||+++++||+|||+|++.
T Consensus 1238 ------~e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~-N~SvGQRQLlCLARALLr~skILvLDEATAsV 1306 (1381)
T KOG0054|consen 1238 ------DEYSDDE----IWEALERCQLKDVVSSLPGGLDSEVSEGGE-NFSVGQRQLLCLARALLRKSKILVLDEATASV 1306 (1381)
T ss_pred ------cccCHHH----HHHHHHHhChHHHHhhCCcCCCceecCCCc-cCChHHHHHHHHHHHHhccCCEEEEecccccC
Confidence 1233333 444444443 44568888887774 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|++|-..|.+.||+-- +++|||.+.|+.+ ..--+|||+||+ .|+++++|+|.
T Consensus 1307 D~~TD~lIQ~tIR~~F-~dcTVltIAHRl~--TVmd~DrVlVld-~G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1307 DPETDALIQKTIREEF-KDCTVLTIAHRLN--TVMDSDRVLVLD-AGRVVEFDSPA 1358 (1381)
T ss_pred ChHHHHHHHHHHHHHh-cCCeEEEEeeccc--hhhhcCeEEEee-CCeEeecCChH
Confidence 9999999999999854 4899999999987 455689999998 59999999985
No 332
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=337.70 Aligned_cols=216 Identities=15% Similarity=0.246 Sum_probs=174.4
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++. .+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++
T Consensus 250 ~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKI 312 (491)
T ss_pred EEEEeCcccc---------------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEEC
Confidence 4788888863 1358999999999999999999999999999999999887 5799999999876
Q ss_pred Ccc----cccccceEeecCC---ccCCCCCHHHHHHHHhh--h-cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 043954 543 VQK----TFARISGYCEQTD---IHSPQITVEESVKFSAW--L-RLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIP 611 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~-~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~ 611 (1045)
... ..++.++|++|+. .+++.+|+.+|..+... . ...........++.++++++.+++. +..++.++
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 390 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG-- 390 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc--
Confidence 431 1234589999974 36788888877432210 0 0000012233345678899999995 45677764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
.|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|+
T Consensus 391 ---~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~- 465 (491)
T PRK10982 391 ---SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMS- 465 (491)
T ss_pred ---cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEE-
Confidence 79999999999999999999999999999999999999999999999888999999999986 5778999999998
Q ss_pred CcEEEEecCCC
Q 043954 692 GGRIIYSGMLG 702 (1045)
Q Consensus 692 gG~~~~~G~~~ 702 (1045)
+|+++..++.+
T Consensus 466 ~g~i~~~~~~~ 476 (491)
T PRK10982 466 NGLVAGIVDTK 476 (491)
T ss_pred CCEEEEEEccc
Confidence 58999877654
No 333
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-34 Score=298.54 Aligned_cols=189 Identities=27% Similarity=0.366 Sum_probs=159.8
Q ss_pred eEEEeceEEEEecCccccccccccc-cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEK-KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
-++.+|++..++.... +... ...+++||||+|++||+++|+|.||||||||-|+|.|+.+ |++|+|.++|++
T Consensus 4 ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcc
Confidence 3678888887765432 1111 2579999999999999999999999999999999999988 689999999987
Q ss_pred CCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 043954 542 KVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 620 (1045)
+.... ++++.+++.++++.+|+.. ..++.. ++|||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----helSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRYP-----HELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----cccCchh
Confidence 53221 2345567899999999864 444443 6899999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
|||++|||||+.+|+++++|||||+||...+.+|+++|+++.++ |.|.++++||.+ .+...+||+.+|. -|++++.|
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy-~G~iVE~g 192 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMY-LGKIVEIG 192 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEe-cCceeEec
Confidence 99999999999999999999999999999999999999999876 999999999987 4677899999998 59999999
Q ss_pred CCC
Q 043954 700 MLG 702 (1045)
Q Consensus 700 ~~~ 702 (1045)
+.+
T Consensus 193 ~~~ 195 (268)
T COG4608 193 PTE 195 (268)
T ss_pred CHH
Confidence 864
No 334
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.1e-34 Score=378.41 Aligned_cols=238 Identities=24% Similarity=0.304 Sum_probs=184.0
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
...++..+.+|+.+.++.+++.... ..+. +.....++++|++|.++.. +++++|+|+
T Consensus 580 ~~~~a~~s~~Ri~~~L~~~~~~~~~----~~~~---------~~~~~~I~~~~vsF~y~~~----------~~~~vL~~i 636 (1495)
T PLN03232 580 QVVNANVSLQRIEELLLSEERILAQ----NPPL---------QPGAPAISIKNGYFSWDSK----------TSKPTLSDI 636 (1495)
T ss_pred HHHHHHHHHHHHHHHHcCccccccc----cCCc---------CCCCCcEEEEeeEEEcCCC----------CCCceeeee
Confidence 4566778899998887654321110 0000 0012358899999987521 135699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhh
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAW 575 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 575 (1045)
|+++++||.++|+||||||||||+++|.|..+ +.+|++. ..++.++||+|++.++. .|++|||.|+..
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~---------~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~ 704 (1495)
T PLN03232 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV---------VIRGSVAYVPQVSWIFN-ATVRENILFGSD 704 (1495)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE---------EecCcEEEEcCcccccc-ccHHHHhhcCCc
Confidence 99999999999999999999999999999887 5677652 24567899999888775 599999998631
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 576 LRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
.+++ +.+++++..+ +++..+|.+|+.|. +||||||||++||||++++|+|++||||||+||+
T Consensus 705 ------~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 705 ------FESE----RYWRAIDVTALQHDLDLLPGRDLTEIGERGV-NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred ------cCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCCCc-ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 2222 2334444433 56678899999886 7999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 649 RAAAIVMRA-VKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 649 ~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
.+++++.+. ++.. .+|+|+|++||+++ ..+.+|+|++|+ +|++++.|+.++
T Consensus 774 ~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~-~G~i~~~Gt~~e 825 (1495)
T PLN03232 774 HVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVS-EGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEe-CCEEEEecCHHH
Confidence 999998765 5544 35899999999975 578899999998 599999998653
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1e-33 Score=300.94 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=152.3
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-ECCeeCCcccccccceEeecCCccCCCCCHHHH
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIR-VGGYPKVQKTFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~-~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
+|+|||+++++||+++|+||||||||||+|+|+|..+ |.+|+|. ++|.... +.++..+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDALP----------LGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCceec----------cccccccCCcCcHHHH
Confidence 7999999999999999999999999999999999887 5789997 7764321 2234567889999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDAR 649 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~ 649 (1045)
+.+...... .+.++. .+.+.+.+++++..++.++ +||||||||++|||||+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998654331 222222 2234455678777787774 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 650 AAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 650 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
++..+.+.+.+..+ ++|+|++||++. ++.+.||++++|+ +|++++.|+.+
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 188 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLL-HGKITMCEDLA 188 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEE-CCeEEEeCCHH
Confidence 99999998866444 578999999986 5667899999998 59999999874
No 336
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-33 Score=374.36 Aligned_cols=237 Identities=23% Similarity=0.307 Sum_probs=184.4
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
...++..+.+|+.+.++.++..... .+... .....++++|++|.++.. +++++|+|+
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~----~~~~~---------~~~~~I~~~nvsf~y~~~----------~~~~vL~~i 636 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLP----NPPLE---------PGLPAISIKNGYFSWDSK----------AERPTLSNI 636 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCccccccc----CCccc---------CCCCceEEEeeEEEccCC----------CCCceeece
Confidence 3556778889998887543221110 00000 011258899999987421 135699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEE-EEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHh
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQ-GEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSA 574 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~-G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~ 574 (1045)
|+++++||.++|+||||||||||+++|.|..+ +.+ |+|.+. +.++||+|++.++. .||+|||.|+.
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l~----------~~Iayv~Q~p~Lfn-gTIreNI~fg~ 703 (1622)
T PLN03130 637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVIR----------GTVAYVPQVSWIFN-ATVRDNILFGS 703 (1622)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEEc----------CeEEEEcCccccCC-CCHHHHHhCCC
Confidence 99999999999999999999999999999987 578 899753 46899999887765 69999999864
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 575 WLRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
. .++ ++.+++++..+ |++..+|.+|+.|. +|||||||||+||||++++|+|++||||||+||
T Consensus 704 ~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~-~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 704 P------FDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERGV-NISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred c------ccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCCC-CCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 2 222 22444554444 45678999999885 799999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 648 ARAAAIVMR-AVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 648 ~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
+.+++++.+ .++.+. +|+|+|++||+++ ..+.+|+|++|+ +|++++.|+.++
T Consensus 773 ~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~-~G~i~e~Gt~~e 825 (1622)
T PLN03130 773 AHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVH-EGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEe-CCEEEEeCCHHH
Confidence 999998865 566553 5899999999975 678899999998 599999998653
No 337
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-33 Score=336.90 Aligned_cols=215 Identities=19% Similarity=0.299 Sum_probs=169.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|++.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 588999988652 34699999999999999999999999999999999997642 2589999999764
Q ss_pred Cc----ccccccceEeecCCccCC--CCCHHHHHHHHhhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 043954 543 VQ----KTFARISGYCEQTDIHSP--QITVEESVKFSAWL--RLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQ 613 (1045)
Q Consensus 543 ~~----~~~~~~~~~v~q~~~~~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 613 (1045)
.. ...++.++|++|++.+.+ ..|++|++.+.... ........ +.+++++++++.+++.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~---- 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD-RQQKLAQQWLDILGIDKRTADAPFH---- 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCH-HHHHHHHHHHHHcCCchhhccCchh----
Confidence 21 123456899999865543 35777776543210 11111122 23456889999999987 7787764
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEecCCcHHHHH-hcceEEEEec
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGR-TTVCTIHQPSIDVFE-AFDELLLMKA 691 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~~~H~~~~~~~~-~~d~v~~l~~ 691 (1045)
.|||||||||+|||||+.+|++|+|||||+|||+.+++.+.+.|+++++++. |||++||+++ ++.+ .+|++++|+
T Consensus 401 -~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~- 477 (490)
T PRK10938 401 -SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVP- 477 (490)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEec-
Confidence 7999999999999999999999999999999999999999999999987765 6999999986 4555 589999998
Q ss_pred CcEEEEec
Q 043954 692 GGRIIYSG 699 (1045)
Q Consensus 692 gG~~~~~G 699 (1045)
+|++++.-
T Consensus 478 ~G~i~~~~ 485 (490)
T PRK10938 478 DGDIYRYV 485 (490)
T ss_pred CCceEEee
Confidence 48877653
No 338
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=337.61 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=167.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++. ++++|+|+||+|++||+++|+||||||||||||+|+|..+ |.+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC---
Confidence 56788888652 3569999999999999999999999999999999999887 56899999873
Q ss_pred cccccccceEeecCCccCCCCCHHHHHHHHhh-h----------c-CCC-C----------------CCHHHHHHHHHHH
Q 043954 544 QKTFARISGYCEQTDIHSPQITVEESVKFSAW-L----------R-LPP-E----------------IDSETKARFVEEV 594 (1045)
Q Consensus 544 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~----------~-~~~-~----------------~~~~~~~~~v~~~ 594 (1045)
+.++|++|+..+++.+||+||+.++.. . . .+. . ....+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 247999999888899999999986421 0 0 000 0 0001223567889
Q ss_pred HHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 043954 595 IETIELDDIK-DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIH 673 (1045)
Q Consensus 595 l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H 673 (1045)
++.+|+.+.. +..+ ..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||++||
T Consensus 139 l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997643 3444 37999999999999999999999999999999999999999999864 5899999999
Q ss_pred CCcHHHHHhcceEEEEecCcEE-EEecCCC
Q 043954 674 QPSIDVFEAFDELLLMKAGGRI-IYSGMLG 702 (1045)
Q Consensus 674 ~~~~~~~~~~d~v~~l~~gG~~-~~~G~~~ 702 (1045)
++. .+.+.||++++|+ +|++ ++.|+.+
T Consensus 211 d~~-~~~~~~d~i~~l~-~g~i~~~~g~~~ 238 (530)
T PRK15064 211 DRH-FLNSVCTHMADLD-YGELRVYPGNYD 238 (530)
T ss_pred CHH-HHHhhcceEEEEe-CCEEEEecCCHH
Confidence 986 5778899999998 5888 5788753
No 339
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=277.85 Aligned_cols=220 Identities=24% Similarity=0.374 Sum_probs=176.3
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc---ccccceEeecCC--ccC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKT---FARISGYCEQTD--IHS 561 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~---~~~~~~~v~q~~--~~~ 561 (1045)
.++++|+++|++|..|+++.|+|.||||||||+|+|+|... +++|+|.++|.+++... +...++-|+|++ ...
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 35789999999999999999999999999999999999887 68999999999976532 234567789986 468
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCe
Q 043954 562 PQITVEESVKFSAWLRLPPEIDS---ETKARFVEEVIETI--ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSI 636 (1045)
Q Consensus 562 ~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~i 636 (1045)
+.+|++||+..+..-......+. +.+++.-.+-++.+ ||++..++++| -|||||||-++++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998754322222222 23333344445554 56888888887 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc----chhHHHHH
Q 043954 637 IFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR----HSSKLIEY 711 (1045)
Q Consensus 637 llLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~----~~~~~~~~ 711 (1045)
|+|||-|++|||.+++.|++.-.++.++ +.|.+++||+.. +...+-+|.++|+ +|+|+.+=.-++ ...++.+.
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh-~G~IvlDv~g~~k~~L~v~dli~~ 247 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLH-SGKIVLDVTGEEKASLTVLDLIQM 247 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEe-CCeEEEEcccccccCCcHHHHHHH
Confidence 9999999999999999999999998765 679999999986 6788999999998 599997643222 12456666
Q ss_pred HhcC
Q 043954 712 FQGI 715 (1045)
Q Consensus 712 f~~~ 715 (1045)
|+..
T Consensus 248 F~~~ 251 (263)
T COG1101 248 FEKI 251 (263)
T ss_pred HHHH
Confidence 7654
No 340
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.9e-33 Score=345.66 Aligned_cols=199 Identities=17% Similarity=0.267 Sum_probs=159.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++ +++++|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.+++
T Consensus 451 ~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~--~~~G~i~~~~--- 513 (659)
T TIGR00954 451 GIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP--VYGGRLTKPA--- 513 (659)
T ss_pred eEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEeecC---
Confidence 588999998652 12469999999999999999999999999999999999987 5689998764
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc------cccCCCCCCC
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDS------LVGIPGQSGL 616 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~------~vg~~~~~~L 616 (1045)
++.++|++|++.+++. |++||+.++........ .+..++.++++++.+++.+..++ ..+. ...|
T Consensus 514 -----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~--~~~L 583 (659)
T TIGR00954 514 -----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDW--MDVL 583 (659)
T ss_pred -----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCccccccc--ccCC
Confidence 3468999999887776 99999987542211000 00112346788888888765443 3322 2479
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
|||||||++|||||+++|++++|||||+|||+.+++.+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.+|
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999998876 3899999999986 468899999997444
No 341
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.4e-33 Score=336.78 Aligned_cols=207 Identities=27% Similarity=0.382 Sum_probs=168.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. +++++|+|+||+|++||+++|+||||||||||||+|+|..+ |.+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 578999998652 13569999999999999999999999999999999999987 57899999752
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhh-h--------------cCCC-CCC-----------------HHHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAW-L--------------RLPP-EID-----------------SETKAR 589 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~--------------~~~~-~~~-----------------~~~~~~ 589 (1045)
..+||++|++.+++.+||.||+.++.. . ..+. ... ..+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 348999999988899999999987521 0 0000 000 001234
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 043954 590 FVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTV 669 (1045)
Q Consensus 590 ~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 669 (1045)
+++++++.+|+.. .++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|+|
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 5788899999964 566664 79999999999999999999999999999999999999999999986 35999
Q ss_pred EEecCCcHHHHHhcceEEEEecCcEEE-EecCCC
Q 043954 670 CTIHQPSIDVFEAFDELLLMKAGGRII-YSGMLG 702 (1045)
Q Consensus 670 ~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~~ 702 (1045)
++||++. .+.+.||++++|++ |+++ +.|+.+
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 246 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 246 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCHH
Confidence 9999986 57788999999984 7875 778653
No 342
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.5e-33 Score=302.42 Aligned_cols=193 Identities=21% Similarity=0.249 Sum_probs=158.8
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-----------ECCeeCCcc--c-cc--ccceE
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIR-----------VGGYPKVQK--T-FA--RISGY 553 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~-----------~~g~~~~~~--~-~~--~~~~~ 553 (1045)
.+|+|+| .+++||+++|+||||||||||+|+|+|..+ |++|+|. ++|++.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5999999 599999999999999999999999999987 5799996 778765321 1 11 13678
Q ss_pred eecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 043954 554 CEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSN 633 (1045)
Q Consensus 554 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~ 633 (1045)
++|+....+ .++.+++.+.. + ....++.++++++.+|+.+..++.+ ..||||||||++|||+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhC
Confidence 888877777 48888887642 1 1223455788999999987777665 37999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 634 PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 634 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|++++|||||++||+.++..+.+.|++++++|+|+|+++|++. .+.+.||++++|+ |++.+.|-.+
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~~ 223 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVVT 223 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceeee
Confidence 9999999999999999999999999999888999999999975 4666899999995 5677666544
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.6e-32 Score=331.22 Aligned_cols=211 Identities=21% Similarity=0.278 Sum_probs=175.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. +. .|+++|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 578999987652 12 4899999999999999999999999999999999987 578999885
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
..++|++|+..+.+.+||+||+.+.... ... ...++++++.+++.+..++.++ .|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHH
Confidence 1379999998888899999999875311 111 1246789999999888888874 79999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++|||+. .+...+|++++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999875 899999999976 5778899999995 478777775
Q ss_pred Ccc---hhHHHHHHhcC
Q 043954 702 GRH---SSKLIEYFQGI 715 (1045)
Q Consensus 702 ~~~---~~~~~~~f~~~ 715 (1045)
... .+.+..+++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 432 23345556555
No 344
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=332.74 Aligned_cols=199 Identities=19% Similarity=0.260 Sum_probs=166.3
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~- 381 (530)
T PRK15064 318 NALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN- 381 (530)
T ss_pred ceEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-
Confidence 3588999998652 3469999999999999999999999999999999999887 57899999873
Q ss_pred CCcccccccceEeecCCc--cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 043954 542 KVQKTFARISGYCEQTDI--HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 618 (1045)
+.+||++|+.. +.+.+|++||+.+.. .. . ..+++++++++.+++. +..++.++ .|||
T Consensus 382 -------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 441 (530)
T PRK15064 382 -------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSVK-----VLSG 441 (530)
T ss_pred -------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCccc-----ccCH
Confidence 35899999863 556789999986421 11 1 1124577899999994 56777764 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE-E
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII-Y 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~ 697 (1045)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||++. .+.+.||++++|++ |+++ +
T Consensus 442 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~ 516 (530)
T PRK15064 442 GEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDF 516 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEc
Confidence 9999999999999999999999999999999999999999886 459999999986 57788999999984 7887 7
Q ss_pred ecCC
Q 043954 698 SGML 701 (1045)
Q Consensus 698 ~G~~ 701 (1045)
.|+.
T Consensus 517 ~g~~ 520 (530)
T PRK15064 517 SGTY 520 (530)
T ss_pred CCCH
Confidence 7764
No 345
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.5e-32 Score=330.97 Aligned_cols=207 Identities=27% Similarity=0.365 Sum_probs=166.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++. +++++|+|+|+++++||+++|+||||||||||||+|+|..+ |.+|+|.+++.
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 478899998652 13469999999999999999999999999999999999987 57899999751
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhh-c------------CCCCCCHH--------------------HHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWL-R------------LPPEIDSE--------------------TKAR 589 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~------------~~~~~~~~--------------------~~~~ 589 (1045)
..+||++|++.+++.+||+||+.++... + ........ ....
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 3589999999888999999999875311 0 00000000 0123
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 043954 590 FVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTV 669 (1045)
Q Consensus 590 ~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 669 (1045)
+++++++.+++.. .++.+ ..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|+|
T Consensus 142 ~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4667778888854 56665 379999999999999999999999999999999999999999999875 36999
Q ss_pred EEecCCcHHHHHhcceEEEEecCcEEE-EecCCC
Q 043954 670 CTIHQPSIDVFEAFDELLLMKAGGRII-YSGMLG 702 (1045)
Q Consensus 670 ~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~~ 702 (1045)
++||++. .+...||++++|++ |+++ +.|+.+
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 244 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHH
Confidence 9999986 57778999999984 7865 777653
No 346
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-32 Score=279.40 Aligned_cols=157 Identities=22% Similarity=0.332 Sum_probs=132.7
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
++.+++|+ +++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE---------EEEEcccCC--------
Confidence 45688884 8999999999999999999999999999987 579999999853 577776321
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
||||||||++|||+|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC-CEEEEEecCCcHHHHHhcceEEEEecCcEEEEe--cCCCcchhHHHHHHhc
Q 043954 648 ARAAAIVMRAVKNVVRTG-RTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS--GMLGRHSSKLIEYFQG 714 (1045)
Q Consensus 648 ~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~--G~~~~~~~~~~~~f~~ 714 (1045)
+.++..+.+.++++++++ +|+|++||++. ++.+.||++++|++ +-.++. |+++...+....|+.+
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPKGTREGINRFLRG 171 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCcchhHHHHHHHHh
Confidence 999999999999988775 89999999975 46678999999985 444444 6666545556666644
No 347
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.5e-32 Score=331.00 Aligned_cols=202 Identities=20% Similarity=0.308 Sum_probs=165.9
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+|+|+|..+ |.+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~- 386 (556)
T PRK11819 323 KVIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET- 386 (556)
T ss_pred eEEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-
Confidence 3588999998652 3569999999999999999999999999999999999887 57899999541
Q ss_pred CCcccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 043954 542 KVQKTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 619 (1045)
..+||++|+. .+++.+||.||+.+...... .... ....+++++.+++.+ ..++.++ +||||
T Consensus 387 -------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 449 (556)
T PRK11819 387 -------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGG 449 (556)
T ss_pred -------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHH
Confidence 1479999986 67888999999987643221 1111 122456899999964 4677764 79999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE-Ee
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII-YS 698 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~ 698 (1045)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++ . .|+|++||++. .+.+.||++++|+++|++. +.
T Consensus 450 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-~tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~ 525 (556)
T PRK11819 450 ERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--P-GCAVVISHDRW-FLDRIATHILAFEGDSQVEWFE 525 (556)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--C-CeEEEEECCHH-HHHHhCCEEEEEECCCeEEEec
Confidence 999999999999999999999999999999999999999987 2 48999999976 5778899999998657776 45
Q ss_pred cC
Q 043954 699 GM 700 (1045)
Q Consensus 699 G~ 700 (1045)
|+
T Consensus 526 g~ 527 (556)
T PRK11819 526 GN 527 (556)
T ss_pred CC
Confidence 54
No 348
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3e-32 Score=294.04 Aligned_cols=225 Identities=21% Similarity=0.301 Sum_probs=186.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIQGEIRVGG 539 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~---~~~G~I~~~g 539 (1045)
-++.+|+++.+... .+..+++++|||++++||.+||+|.||||||-..+.+.|+.+.. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 35678887766432 34678999999999999999999999999999999999977642 2469999999
Q ss_pred eeCCc---cccc----ccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 043954 540 YPKVQ---KTFA----RISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGI 610 (1045)
Q Consensus 540 ~~~~~---~~~~----~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~ 610 (1045)
.++-. ...+ ..++.++|++ .+.|-.|+..-+.-..++ ....+.++.++++.++++.+|+.+-....-..
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 98532 2222 3589999997 577888988887765444 34567778888899999999998766555444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEE
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
| ++|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.++ |..++++|||+.. +-+.+|||+||
T Consensus 155 P--HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM 231 (534)
T COG4172 155 P--HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVM 231 (534)
T ss_pred C--cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEE
Confidence 4 589999999999999999999999999999999999999999999999866 9999999999873 67789999999
Q ss_pred ecCcEEEEecCCC
Q 043954 690 KAGGRIIYSGMLG 702 (1045)
Q Consensus 690 ~~gG~~~~~G~~~ 702 (1045)
.+ |++++.|+.+
T Consensus 232 ~~-G~ivE~~~t~ 243 (534)
T COG4172 232 QH-GEIVETGTTE 243 (534)
T ss_pred ec-cEEeecCcHH
Confidence 84 9999999864
No 349
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.8e-32 Score=330.59 Aligned_cols=201 Identities=20% Similarity=0.306 Sum_probs=165.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ |.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 588999988652 3569999999999999999999999999999999999887 57899999541
Q ss_pred CcccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 043954 543 VQKTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 620 (1045)
..++|++|+. .+++.+||.||+.+...... .... +..++++++.+++.+ ..++.++ .|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999986 47788999999988643211 1111 123557899999964 4577764 799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE-Eec
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII-YSG 699 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 699 (1045)
||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .|+|++||++. .+.+.||++++|+++|++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999976 5778899999998656766 445
Q ss_pred C
Q 043954 700 M 700 (1045)
Q Consensus 700 ~ 700 (1045)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
No 350
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.6e-32 Score=277.50 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=179.0
Q ss_pred cccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCC
Q 043954 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 486 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 565 (1045)
.....+|+||||++++||.+||+|+||||||||||+|+|.++ |++|+|.++|.-.... .-.-.+.|++|
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt~G~v~v~G~v~~li---------~lg~Gf~pelT 105 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PTSGKVKVTGKVAPLI---------ELGAGFDPELT 105 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CCCceEEEcceEehhh---------hcccCCCcccc
Confidence 456789999999999999999999999999999999999998 6899999999642111 11123457799
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
.+||+.+-+.+. ..+.++.+++++++++..+|.+..|.++ +.+|.||+-|++.|.|...+|+||++||-.+-
T Consensus 106 GreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv-----ktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 106 GRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred hHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch-----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 999999876553 4577888899999999999999999998 58999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCcchhHHHHHHhcC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIEYFQGI 715 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~ 715 (1045)
-|+.-+++..+.++++.++++|+|+++|+++ .+.+.||++++|+ +|++...|++ +++.++|++.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~-~G~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLE-HGQIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEe-CCEEEEcCCH----HHHHHHHHHh
Confidence 9999999999999999888999999999987 5889999999998 5999999997 4566666654
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=259.19 Aligned_cols=181 Identities=24% Similarity=0.313 Sum_probs=157.2
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCc-ccccccceEeecCCccCCCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIQGEIRVGGYPKVQ-KTFARISGYCEQTDIHSPQI 564 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~-~~~G~I~~~g~~~~~-~~~~~~~~~v~q~~~~~~~l 564 (1045)
++..+|.|+|++|.+||++-||||||||||||+..+.|...+. ..+|++.+|+++++. ...+|.+|..+|++.++|.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 3467999999999999999999999999999999999976532 468999999998764 34567899999999999999
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 043954 565 TVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 644 (1045)
Q Consensus 565 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPts 644 (1045)
+|.+|+.|+. |..+..+.+++.++..+++.||.+..+.-. ..||||||-||++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDP-----ATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcCh-----hhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9999998863 455556677788999999999998877654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH-HHcCCEEEEEecCCc
Q 043954 645 GLDARAAAIVMRAVKNV-VRTGRTTVCTIHQPS 676 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~ 676 (1045)
.||..-+.+..+..-.- ...|..+|.+|||..
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999998877654 445999999999864
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=7.7e-32 Score=275.60 Aligned_cols=154 Identities=21% Similarity=0.321 Sum_probs=128.7
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
.+++|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4579999999999999999999999999999999963 3789999876321 11233567665
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhC--CCeEEEeCCCC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQRKRLTIAVELVSN--PSIIFMDEPTS 644 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~--p~illLDEPts 644 (1045)
.++++.++|.. ..+..+ +.||||||||++|||||+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 13567778765 355554 47999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 645 GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
|||+.+++.+.+.|++++++|+|||++||++. ..+.+|++++|.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~--~~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD--VLSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEECC
Confidence 99999999999999999877999999999985 3578999999964
No 353
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.98 E-value=4.2e-32 Score=359.79 Aligned_cols=244 Identities=23% Similarity=0.359 Sum_probs=183.6
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
...++..+.+|+.+..+.+++++... .. . ... +.++..++++|+++.++. +++++|+|+
T Consensus 599 ~~~~a~~s~~Ri~~~l~~~~~~~~~~--~~-~---~~~----~~~~~~i~~~~~~~~~~~-----------~~~~~l~~i 657 (1522)
T TIGR00957 599 SIVQASVSLKRLRIFLSHEELEPDSI--ER-R---TIK----PGEGNSITVHNATFTWAR-----------DLPPTLNGI 657 (1522)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccc--cc-c---ccC----CCCCCcEEEEEeEEEcCC-----------CCCceeeee
Confidence 45667788899988876543221100 00 0 000 001225889999997631 234699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhh
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAW 575 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 575 (1045)
|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++||+|++.++ +.||+||+.++..
T Consensus 658 sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g----------~i~yv~Q~~~l~-~~Ti~eNI~~g~~ 724 (1522)
T TIGR00957 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG----------SVAYVPQQAWIQ-NDSLRENILFGKA 724 (1522)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC----------EEEEEcCCcccc-CCcHHHHhhcCCc
Confidence 99999999999999999999999999999987 5799999987 379999988765 5799999998632
Q ss_pred hcCCCCCCHHHHHHHHH--HHHHHcC-CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 043954 576 LRLPPEIDSETKARFVE--EVIETIE-LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 652 (1045)
Q Consensus 576 ~~~~~~~~~~~~~~~v~--~~l~~l~-L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~ 652 (1045)
.+++..++.++ ++.+.++ +++..+|.+|+.|. +||||||||++||||++++|++++||||||+||+.+++
T Consensus 725 ------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~-~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~ 797 (1522)
T TIGR00957 725 ------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797 (1522)
T ss_pred ------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 12222111111 1122232 34567788988774 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--HHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 653 IVMRAVKNV--VRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 653 ~i~~~l~~l--~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
.+.+.+.+. ..+|+|+|++||+++ ..+.+|++++|+ +|+++..|+.++
T Consensus 798 ~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~-~G~i~~~g~~~~ 847 (1522)
T TIGR00957 798 HIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMS-GGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEec-CCeEEeeCCHHH
Confidence 999999753 235899999999985 456799999998 599999998653
No 354
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.4e-32 Score=266.23 Aligned_cols=178 Identities=25% Similarity=0.338 Sum_probs=156.8
Q ss_pred cccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc--cccccceEeecCCccCCC
Q 043954 486 EKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK--TFARISGYCEQTDIHSPQ 563 (1045)
Q Consensus 486 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ 563 (1045)
.+++.++.++||++.+||.+-|.||||||||||||+|+|+.. |.+|+|.++|.++... ..++..-|+-.++.+-+.
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 456789999999999999999999999999999999999988 6799999999886542 244556788777888899
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 043954 564 ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPT 643 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPt 643 (1045)
+|+.|||.|...+... .+ .+.+.++++.+||.+..|.+++ .||-||||||+|||-++..+++.|||||+
T Consensus 90 LTa~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 90 LTALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred hhHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 9999999998765432 11 2347889999999999999996 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 644 SGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 644 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
++||......+-.++..-+.+|..||.+||||.
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 999999999999999998888999999999986
No 355
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1e-31 Score=267.35 Aligned_cols=143 Identities=28% Similarity=0.429 Sum_probs=126.8
Q ss_pred EEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 043954 465 AFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ 544 (1045)
Q Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~ 544 (1045)
+++|+++.+. +.++++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~---- 62 (144)
T cd03221 2 ELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST---- 62 (144)
T ss_pred EEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe----
Confidence 4677776542 2359999999999999999999999999999999999987 57999999984
Q ss_pred ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 043954 545 KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRL 624 (1045)
Q Consensus 545 ~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv 624 (1045)
+.++|++| ||+|||||+
T Consensus 63 ----~~i~~~~~-----------------------------------------------------------lS~G~~~rv 79 (144)
T cd03221 63 ----VKIGYFEQ-----------------------------------------------------------LSGGEKMRL 79 (144)
T ss_pred ----EEEEEEcc-----------------------------------------------------------CCHHHHHHH
Confidence 35788887 899999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 625 TIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 625 ~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
+|||||+.+|++++|||||+|||+.++..+.+.|+++ ++|+++++|+++ ++.+.+|++++|++ |+
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELED-GK 144 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeC-CC
Confidence 9999999999999999999999999999999999886 479999999975 56678999999974 53
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=9.7e-32 Score=260.91 Aligned_cols=204 Identities=21% Similarity=0.339 Sum_probs=175.5
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc---ccccceEeecCCc--cCC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKT---FARISGYCEQTDI--HSP 562 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~---~~~~~~~v~q~~~--~~~ 562 (1045)
...+++.|||+++.|+.+||+|.||||||||.|+|+|..+ |++|+|++||+++...+ +.+.+-.++|+++ +.|
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 3568999999999999999999999999999999999988 68999999999865322 3356789999864 677
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDE 641 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDE 641 (1045)
.+.+.+-+.... ++..+++.+++.+++.+.++.+|| ++.++-.+ +.||-||||||++||||+.+|+|++.||
T Consensus 103 Rl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 103 RLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccccch-----hhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 777777776654 445567788888999999999998 45556554 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 642 PTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 642 PtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
...+||...+.++.++.-++.++ |.+-|.++.+.. -+....|+|+||++ |++++.|.+.
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~E-G~vvE~G~t~ 235 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHE-GEVVERGSTA 235 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEec-CceeecCChh
Confidence 99999999999999999999865 999999999886 47788999999985 8999999864
No 357
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.6e-31 Score=325.56 Aligned_cols=199 Identities=22% Similarity=0.333 Sum_probs=164.0
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||||+|+|..+ |++|+|.+++.
T Consensus 311 ~~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~- 374 (638)
T PRK10636 311 PLLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG- 374 (638)
T ss_pred ceEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC-
Confidence 3588999998652 3569999999999999999999999999999999999887 57999999741
Q ss_pred CCcccccccceEeecCC--ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 043954 542 KVQKTFARISGYCEQTD--IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLST 618 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 618 (1045)
..+||++|+. .+.+..|+.+++.- .. . ....+.++++++.+++. +..++.++ .|||
T Consensus 375 -------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~--~----~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSg 433 (638)
T PRK10636 375 -------IKLGYFAQHQLEFLRADESPLQHLAR---LA--P----QELEQKLRDYLGGFGFQGDKVTEETR-----RFSG 433 (638)
T ss_pred -------EEEEEecCcchhhCCccchHHHHHHH---hC--c----hhhHHHHHHHHHHcCCChhHhcCchh-----hCCH
Confidence 2479999974 34556688877631 11 1 11234578899999996 35777774 7999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE-E
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII-Y 697 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~ 697 (1045)
||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.+.||++++|+ +|+++ +
T Consensus 434 GekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~-~G~i~~~ 508 (638)
T PRK10636 434 GEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVH-DGKVEPF 508 (638)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEc
Confidence 9999999999999999999999999999999999999999987 349999999975 5778899999998 58886 7
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+.+
T Consensus 509 ~g~~~ 513 (638)
T PRK10636 509 DGDLE 513 (638)
T ss_pred CCCHH
Confidence 78753
No 358
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=3.3e-31 Score=325.55 Aligned_cols=202 Identities=24% Similarity=0.357 Sum_probs=164.7
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. ++++|+|+|++|++||+++|+||||||||||||+|+|..+ |.+|+|.+ |.+
T Consensus 318 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~ 381 (635)
T PRK11147 318 IVFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK 381 (635)
T ss_pred ceEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC
Confidence 3588999998652 3569999999999999999999999999999999999876 57999998 432
Q ss_pred CCcccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 043954 542 KVQKTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 619 (1045)
. .+||++|+. .+++.+||.||+.+..... .... ....+.++++.+++. +..++.++ .||||
T Consensus 382 ~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 444 (635)
T PRK11147 382 L-------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPVK-----ALSGG 444 (635)
T ss_pred c-------EEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChhh-----hCCHH
Confidence 1 479999975 5788999999998753211 0111 123467889999985 45677774 79999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE-Ee
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII-YS 698 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~ 698 (1045)
|||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++||+.. .+...||++++++++|++. |.
T Consensus 445 ekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~ 520 (635)
T PRK11147 445 ERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYV 520 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEcc
Confidence 999999999999999999999999999999999999999876 459999999975 5678899999997346665 45
Q ss_pred cC
Q 043954 699 GM 700 (1045)
Q Consensus 699 G~ 700 (1045)
|+
T Consensus 521 g~ 522 (635)
T PRK11147 521 GG 522 (635)
T ss_pred CC
Confidence 54
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.4e-30 Score=344.41 Aligned_cols=189 Identities=22% Similarity=0.376 Sum_probs=155.5
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
+++|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 569999999999999999999999999999999999987 5799999988 3799999988876 49999
Q ss_pred HHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 043954 569 SVKFSAWLRLPPEIDSETKAR-----FVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPT 643 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPt 643 (1045)
|+.|+... +.+..++ ..++.++. +++..+|.+|+.|. .|||||||||+||||++.+|++++|||||
T Consensus 506 NI~~g~~~------~~~~~~~~~~~~~L~~~l~~--l~~g~~t~vg~~g~-~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 506 NIIFGLSY------DEYRYTSVIKACQLEEDIAL--FPEKDKTVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HHHhcccc------chHHHHHHHHHHhHHHHHHh--ccccccccccCcCC-CcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99986421 1111111 11222222 34456778888764 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 644 SGLDARAAAIVMRA-VKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 644 sgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
||||+.+++++.+. ++++. +|+|+|++||++. ..+.||++++|+ +|+++..|+.++
T Consensus 577 saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~--~~~~ad~ii~l~-~g~i~~~g~~~~ 633 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE--HLKKADKILLLH-EGVCYFYGTFSE 633 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH--HHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 99999999999984 66664 4899999999986 456799999998 589999998653
No 360
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-30 Score=320.33 Aligned_cols=204 Identities=21% Similarity=0.259 Sum_probs=156.6
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++ +++.+|+||||+|++||++||+||||||||||||+|+|..+ |++|+|.++|..
T Consensus 2 i~i~nls~~~-------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRR-------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEe-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC--
Confidence 5678888765 34679999999999999999999999999999999999876 579999998742
Q ss_pred cccccccceEeecCCccCCCCCHHHHHHHHh-----------------------hhcC-CCCCCHHHHHHHHHHHHHHcC
Q 043954 544 QKTFARISGYCEQTDIHSPQITVEESVKFSA-----------------------WLRL-PPEIDSETKARFVEEVIETIE 599 (1045)
Q Consensus 544 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-----------------------~~~~-~~~~~~~~~~~~v~~~l~~l~ 599 (1045)
.++|++|+.... ..|+.+.+.-.. .+.. .......+.+++++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 256777643322 235444332100 0000 000001122356888999999
Q ss_pred CC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHH
Q 043954 600 LD-DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSID 678 (1045)
Q Consensus 600 L~-~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 678 (1045)
+. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++||+.. .
T Consensus 138 l~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 46777774 79999999999999999999999999999999999999999998875 579999999975 5
Q ss_pred HHHhcceEEEEecCcEEE-EecCC
Q 043954 679 VFEAFDELLLMKAGGRII-YSGML 701 (1045)
Q Consensus 679 ~~~~~d~v~~l~~gG~~~-~~G~~ 701 (1045)
+.+.||++++|+ +|++. |.|+.
T Consensus 209 l~~~~d~i~~L~-~G~i~~~~g~~ 231 (638)
T PRK10636 209 LDPIVDKIIHIE-QQSLFEYTGNY 231 (638)
T ss_pred HHHhcCEEEEEe-CCEEEEecCCH
Confidence 678899999998 57875 56654
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.8e-30 Score=318.70 Aligned_cols=201 Identities=16% Similarity=0.260 Sum_probs=159.9
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.++ +++.+|+|+||+|++||+++|+||||||||||||+|+|..+ |.+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~- 571 (718)
T PLN03073 507 PIISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK- 571 (718)
T ss_pred ceEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc-
Confidence 3588999998662 12459999999999999999999999999999999999887 57899998752
Q ss_pred CCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 043954 542 KVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 620 (1045)
..+||++|+. ...+++.++.........+ ... ++.++++++.+++.+ ..++.+ ..|||||
T Consensus 572 -------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGq 632 (718)
T PLN03073 572 -------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQ 632 (718)
T ss_pred -------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHH
Confidence 3589999975 3445666664332111111 111 234778999999974 556665 4799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE-Eec
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII-YSG 699 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 699 (1045)
||||+|||+|+.+|++|+|||||+|||+.+...+.+.|++. +.|+|++||++. .+...||++++|+ +|+++ +.|
T Consensus 633 kqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~-~G~i~~~~g 707 (718)
T PLN03073 633 KSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVS-EGKVTPFHG 707 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCC
Confidence 99999999999999999999999999999999998888764 349999999976 5777899999998 58887 677
Q ss_pred CC
Q 043954 700 ML 701 (1045)
Q Consensus 700 ~~ 701 (1045)
+.
T Consensus 708 ~~ 709 (718)
T PLN03073 708 TF 709 (718)
T ss_pred CH
Confidence 54
No 362
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3.7e-30 Score=322.97 Aligned_cols=239 Identities=23% Similarity=0.354 Sum_probs=184.9
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
..++.++.+|+.+....+...+... +..+. +..+..++++|.+++-+.. +..+.|+|||
T Consensus 483 ~vqa~VS~~Ri~~fl~~~e~~~~~~--~~~~~---------~~~~~~i~i~~~sfsW~~~----------~~~~tL~dIn 541 (1381)
T KOG0054|consen 483 LVQAKVSLKRLKEFLLSEELDPDSV--ERSPD---------EAGENAIEIKNGSFSWDSE----------SPEPTLKDIN 541 (1381)
T ss_pred HHHHHHHHHHHHHHhcCcccCcccc--ccCCC---------CCCCceEEEeeeeEecCCC----------CCccccccee
Confidence 4567788999988775532211110 00000 1122346777777754321 2334899999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhh
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWL 576 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~ 576 (1045)
++|++|+++||+||-|||||+||.+|.|..+ ..+|++.++|. ++||+|++.++. .||||||.|+...
T Consensus 542 ~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs----------iaYv~Q~pWI~n-gTvreNILFG~~~ 608 (1381)
T KOG0054|consen 542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS----------VAYVPQQPWIQN-GTVRENILFGSPY 608 (1381)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe----------EEEeccccHhhC-CcHHHhhhcCccc
Confidence 9999999999999999999999999999887 57999999984 799999887764 6999999997532
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 043954 577 RLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDAR 649 (1045)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~ 649 (1045)
++ ++-+++++...| ++.-.|.||+.|. +||||||||+++|||+.+|++|++||.|.|++|+.
T Consensus 609 ------d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDah 677 (1381)
T KOG0054|consen 609 ------DE----ERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAH 677 (1381)
T ss_pred ------cH----HHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHh
Confidence 22 234455555544 4566788999997 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 650 AAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 650 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
+.++|.+..-+-.-++||+|++|||. +..+.+|+|++|+ +|++...|+.++
T Consensus 678 vg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~-~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 678 VGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLK-DGKIVESGTYEE 728 (1381)
T ss_pred hhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEec-CCeEecccCHHH
Confidence 99999875544444589999999985 5789999999998 599999999754
No 363
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=3.9e-30 Score=316.05 Aligned_cols=204 Identities=23% Similarity=0.283 Sum_probs=154.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++. ++++|+||||++++||+++|+||||||||||||+|+|..+ |++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~- 66 (635)
T PRK11147 3 LISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL- 66 (635)
T ss_pred EEEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC-
Confidence 367888888652 3569999999999999999999999999999999999877 578999998732
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHH------------------------------HHhhhcCC-CCCCHHHHHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVK------------------------------FSAWLRLP-PEIDSETKARFV 591 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~------------------------------~~~~~~~~-~~~~~~~~~~~v 591 (1045)
.+++++|.+......++.+++. ....+... ......+.++++
T Consensus 67 -------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (635)
T PRK11147 67 -------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRI 139 (635)
T ss_pred -------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 1355555433222344544432 11100000 000001123567
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Q 043954 592 EEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCT 671 (1045)
Q Consensus 592 ~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~ 671 (1045)
+++++.+|+.. ++.+ ..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||++
T Consensus 140 ~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvliv 209 (635)
T PRK11147 140 NEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFI 209 (635)
T ss_pred HHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEE
Confidence 88999999963 6665 379999999999999999999999999999999999999999999887 3599999
Q ss_pred ecCCcHHHHHhcceEEEEecCcEEE-EecCC
Q 043954 672 IHQPSIDVFEAFDELLLMKAGGRII-YSGML 701 (1045)
Q Consensus 672 ~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~ 701 (1045)
||++. .+.+.||++++|+ +|+++ +.|+.
T Consensus 210 sHd~~-~l~~~~d~i~~L~-~G~i~~~~g~~ 238 (635)
T PRK11147 210 SHDRS-FIRNMATRIVDLD-RGKLVSYPGNY 238 (635)
T ss_pred eCCHH-HHHHhcCeEEEEE-CCEEEEecCCH
Confidence 99975 5678899999998 58886 55764
No 364
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.5e-30 Score=314.25 Aligned_cols=180 Identities=25% Similarity=0.268 Sum_probs=150.1
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-----------ECCeeCCcc-----cccccce
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIR-----------VGGYPKVQK-----TFARISG 552 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~-----------~~g~~~~~~-----~~~~~~~ 552 (1045)
..+|++++ .+++||+++|+||||||||||+|+|+|..+ |.+|+|. ++|.++... ..+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 35899999 999999999999999999999999999887 5689997 899875321 1112245
Q ss_pred EeecCCccCC---CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH
Q 043954 553 YCEQTDIHSP---QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVE 629 (1045)
Q Consensus 553 ~v~q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~a 629 (1045)
+.+|.....+ ..||+|++... +.++.++++++.++|.+..|+.++ +||||||||++||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 5555433333 23999998631 123457889999999988888874 799999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 630 LVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 630 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|+|+++|+++ ++...+|++++|.
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~ 285 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAY 285 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 9999999999999999999999999999999988 999999999986 5778899999996
No 365
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.2e-30 Score=260.35 Aligned_cols=141 Identities=31% Similarity=0.545 Sum_probs=125.8
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 565 (1045)
+.+++++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 369999999999999999999999999999999999887 568999999987542 123455777777
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
|||||+||++|||+++.+|++++|||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
||..++..+.+.++++.++++|+++++|++. ++...||+++++++
T Consensus 111 lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999998777899999999976 46666899999974
No 366
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.6e-30 Score=248.06 Aligned_cols=200 Identities=28% Similarity=0.365 Sum_probs=151.5
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC--------Cccccc----ccceEee
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK--------VQKTFA----RISGYCE 555 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~--------~~~~~~----~~~~~v~ 555 (1045)
...--+||||++.|||+++|+|.|||||||||++|+++.. |+.|+|.+.-.+- .+.+.| ..-|+|.
T Consensus 18 ~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~Vh 95 (258)
T COG4107 18 PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH 95 (258)
T ss_pred CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceee
Confidence 3457899999999999999999999999999999999988 6799999865331 111122 2348999
Q ss_pred cCCccCC------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHH
Q 043954 556 QTDIHSP------QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAV 628 (1045)
Q Consensus 556 q~~~~~~------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~ 628 (1045)
|++.-=- ...+.|-++-.. .| . --..++.+.++++.++++.. .|.. ++..|||++||+.|||
T Consensus 96 QnP~DGLRm~VSAG~NiGERlma~G-~R---H--YG~iR~~a~~WL~~VEI~~~RiDD~-----PrtFSGGMqQRLQiAR 164 (258)
T COG4107 96 QNPRDGLRMQVSAGGNIGERLMAIG-AR---H--YGNIRAEAQDWLEEVEIDLDRIDDL-----PRTFSGGMQQRLQIAR 164 (258)
T ss_pred cCccccceeeeccCCccchhHHhhh-hh---h--hhhHHHHHHHHHHhcccCcccccCc-----ccccchHHHHHHHHHH
Confidence 9864221 222333332110 01 1 11234557788998887532 2332 2579999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 629 ELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 629 aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
-|++.|+++++||||.|||...+..++++++.+..+ |..++++||+.. -.--++||.++|+ +|++++.|-.+
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk-~g~vve~GLTD 237 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMK-QGQVVESGLTD 237 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeec-CCCEecccccc
Confidence 999999999999999999999999999999999876 899999999975 2334589999998 59999999764
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=3.5e-29 Score=294.25 Aligned_cols=206 Identities=25% Similarity=0.323 Sum_probs=165.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++.+|++..+ +.+++++|+|+++.+|+.+||+|+||||||||||+|+|... |.+|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC--
Confidence 46778888765 35789999999999999999999999999999999999887 57899987541
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhc-------------CCCC--------------CCHHHHHHHHHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLR-------------LPPE--------------IDSETKARFVEEVI 595 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l 595 (1045)
-.++|++|+....+..||.|.+.-+..-. .+.. .+.-+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 24799999999999999999887543100 0000 00011235677888
Q ss_pred HHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 043954 596 ETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQP 675 (1045)
Q Consensus 596 ~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 675 (1045)
..+|+.+. ++.++ +||||||.||+||++|+.+|++|+|||||++||..+..-+.+.|++. +| |+|+||||-
T Consensus 140 ~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 77775 79999999999999999999999999999999999999999999864 46 999999995
Q ss_pred cHHHHHhcceEEEEecCcEEEEecCC
Q 043954 676 SIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 676 ~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
. -+-+.|++|+-++.|.-..|.|.-
T Consensus 211 ~-FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 211 Y-FLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred H-HHHHHhhheEEecCCceeEecCCH
Confidence 3 466789999999865455677754
No 368
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=3.2e-29 Score=331.48 Aligned_cols=197 Identities=24% Similarity=0.351 Sum_probs=151.7
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCH
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
+++++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++ +.++|++|++.++ ..||
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 34679999999999999999999999999999999999887 578999763 3589999998765 5799
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
+||+.++.... .....+..+...+++.++.+ ++..++.+|+.+ .+|||||||||+|||||+.+|++++|||||++|
T Consensus 738 ~enI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~g-~~LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 738 RGNILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGEKG-VNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 99999852110 00000000011123333332 334456677665 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
|+.+++.+++.+.....+|+|+|++||++. ..+.+|++++|+ +|++++.|+.++
T Consensus 814 D~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~-~G~i~~~G~~~~ 867 (1560)
T PTZ00243 814 DAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALG-DGRVEFSGSSAD 867 (1560)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCEEEEecCHHH
Confidence 999999988754322235899999999975 467899999998 599999998643
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1.5e-28 Score=263.68 Aligned_cols=191 Identities=21% Similarity=0.310 Sum_probs=133.3
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHH-HHHhCCCCCCeEEEEEEE------------CCee-CCccccc-ccce
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLM-DVLSGRKTGGIIQGEIRV------------GGYP-KVQKTFA-RISG 552 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl-~~l~G~~~~~~~~G~I~~------------~g~~-~~~~~~~-~~~~ 552 (1045)
+.++|+|||+++++||+++|+||||||||||+ ..+.. .|++.+ .... ......+ ...+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 45799999999999999999999999999995 44431 111110 0000 0000111 1223
Q ss_pred EeecCCc--cCCCCCHH---HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHH
Q 043954 553 YCEQTDI--HSPQITVE---ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQRKRLTI 626 (1045)
Q Consensus 553 ~v~q~~~--~~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~i 626 (1045)
+..|++. ..+..+|. |...+...+. ..+...++ .+.++.+++.+ ..+..+ ..||||||||++|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~l 148 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRL 148 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHH
Confidence 3333332 23444544 3222221111 11112222 46789999976 366665 4799999999999
Q ss_pred HHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE------ecCcEEEEe
Q 043954 627 AVELVSNP--SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM------KAGGRIIYS 698 (1045)
Q Consensus 627 a~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l------~~gG~~~~~ 698 (1045)
||+|+.+| ++++|||||+|||+.++..+.+.|++++++|.|+|++||++. ..+.||++++| + +|+++++
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~--~~~~~d~i~~l~~~~~~~-~G~iv~~ 225 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED--TIRAADHVIDIGPGAGVH-GGEIVAQ 225 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH--HHHhCCEEEEeCCCcccc-CCEEEec
Confidence 99999998 599999999999999999999999999878999999999985 35789999999 5 6899987
Q ss_pred c
Q 043954 699 G 699 (1045)
Q Consensus 699 G 699 (1045)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 370
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=6.1e-29 Score=305.30 Aligned_cols=216 Identities=18% Similarity=0.189 Sum_probs=152.5
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCe
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIQGEIRVGGY 540 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~-~~~~G~I~~~g~ 540 (1045)
-.++++|+++++. ++++|+|+|++|++||.+||+||||||||||||+|+|.... -|..|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 4588999998762 34599999999999999999999999999999999996421 245688876544
Q ss_pred eCCcc-----------------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCC---------------CCCHHHHH
Q 043954 541 PKVQK-----------------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP---------------EIDSETKA 588 (1045)
Q Consensus 541 ~~~~~-----------------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------------~~~~~~~~ 588 (1045)
..... ..++.+++++|++.+... ++.++.........+. ..+....+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 31100 012235666664322111 1111110000000000 00011223
Q ss_pred HHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 043954 589 RFVEEVIETIELD-DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRT 667 (1045)
Q Consensus 589 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 667 (1045)
++++++++.+|+. +..++.++ .|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4567788888885 44566663 79999999999999999999999999999999999999999999886 789
Q ss_pred EEEEecCCcHHHHHhcceEEEEecCcEEE-EecCC
Q 043954 668 TVCTIHQPSIDVFEAFDELLLMKAGGRII-YSGML 701 (1045)
Q Consensus 668 vi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~ 701 (1045)
+|++||+.. .+.+.||++++|+ +|++. |.|+.
T Consensus 394 viivsHd~~-~l~~~~d~i~~l~-~g~i~~~~g~~ 426 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILHLH-GQKLVTYKGDY 426 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCCH
Confidence 999999975 4667899999998 58885 66764
No 371
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=237.15 Aligned_cols=194 Identities=24% Similarity=0.308 Sum_probs=157.3
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee----CC---c----ccccccceEeec
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP----KV---Q----KTFARISGYCEQ 556 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~----~~---~----~~~~~~~~~v~q 556 (1045)
..++|+|+||+++.||++++-||||+|||||||+|-|.+. +++|+|.+.-.. +. . .-.++.+|||.|
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 3579999999999999999999999999999999999887 679999986432 11 1 123456899999
Q ss_pred CCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCe
Q 043954 557 TDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSI 636 (1045)
Q Consensus 557 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~i 636 (1045)
.-...|..+..|-+.-...-+ ..+.+..++++.+++.++++++..=... +...||||+|||.|||.++.|=+|
T Consensus 101 FLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~La----PaTFSGGEqQRVNIaRgfivd~pI 173 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLA----PATFSGGEQQRVNIARGFIVDYPI 173 (235)
T ss_pred HHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCC----CcccCCchheehhhhhhhhccCce
Confidence 877788877777766544322 4556667778899999999976543332 247999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 637 IFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 637 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
|+|||||++||..++..++++|++-+.+|..+|=+-||-+ --...+||++-+..
T Consensus 174 LLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 174 LLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred EEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 9999999999999999999999998888999999999843 22356899988753
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=8.1e-28 Score=260.38 Aligned_cols=197 Identities=24% Similarity=0.327 Sum_probs=150.2
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHh--------CCCC--CC---eEE------EEEEECCeeCCccc---
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLS--------GRKT--GG---IIQ------GEIRVGGYPKVQKT--- 546 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~--------G~~~--~~---~~~------G~I~~~g~~~~~~~--- 546 (1045)
..-|+|||.+|+.|++++|.|+||||||||++.+. +... ++ ... --|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 1100 00 011 23666766542110
Q ss_pred ----------ccc----------------cceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 043954 547 ----------FAR----------------ISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL 600 (1045)
Q Consensus 547 ----------~~~----------------~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L 600 (1045)
.|+ .+.|..++......+||.|++.|...+. + .+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~------~---~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP------K---IARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh------h---HHHHHHHHHHcCC
Confidence 000 1234445555567899999999875432 1 2346778999999
Q ss_pred Cc-cccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 601 DD-IKDSLVGIPGQSGLSTEQRKRLTIAVELVSN---PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 601 ~~-~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~---p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.+ ..+..+ +.||||||||++|||+|+.+ |++++|||||+|||+.....+.+.|+++.++|.|+|+++|++.
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 356655 47999999999999999996 7999999999999999999999999999888999999999975
Q ss_pred HHHHHhcceEEEEe-----cCcEEEEecCC
Q 043954 677 IDVFEAFDELLLMK-----AGGRIIYSGML 701 (1045)
Q Consensus 677 ~~~~~~~d~v~~l~-----~gG~~~~~G~~ 701 (1045)
..+.+|+++.|. ++|++++.|++
T Consensus 234 --~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 --VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred --HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 457899999993 47999999863
No 373
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=1.2e-28 Score=243.70 Aligned_cols=134 Identities=32% Similarity=0.560 Sum_probs=119.1
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHH
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
|+|||+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999987 579999999998765 345678999999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 644 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPts 644 (1045)
| ...++++++++.+++.+..++.++... ..||||||||++|||||+++|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 123447889999999888888886554 4799999999999999999999999999996
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=3.9e-27 Score=246.79 Aligned_cols=168 Identities=21% Similarity=0.233 Sum_probs=131.5
Q ss_pred ccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC-------CeEEEEEEECCeeCCcccccccceEeecCCccCCCCC
Q 043954 493 HDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG-------GIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 493 ~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~-------~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 565 (1045)
+++++++++| +++|+||||||||||+++|+|...+ ++..|++.++|++......++.+++++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999987532 122356878877654333346789999987655
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCCeEEEeC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELV----SNPSIIFMDE 641 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~----~~p~illLDE 641 (1045)
|.. . . .++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 0 1245666665 44456555 479999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 642 PTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 642 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
||+|||+..+..+.+.|+++++ +.|+|++||++. ..+.+|+++.+...+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEecc
Confidence 9999999999999999999865 789999999975 457899999997643
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=3.1e-26 Score=269.44 Aligned_cols=200 Identities=26% Similarity=0.347 Sum_probs=161.2
Q ss_pred cceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 043954 460 EQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGG 539 (1045)
Q Consensus 460 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g 539 (1045)
.+..++++|+++.+. +++.+++|+|+.|++|+.+||+||||+|||||||+|+|... +.+|+|.+.-
T Consensus 318 g~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~ 383 (530)
T COG0488 318 GKLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGE 383 (530)
T ss_pred CCeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCC
Confidence 356789999998653 22679999999999999999999999999999999999776 4589998753
Q ss_pred eeCCcccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCC
Q 043954 540 YPKVQKTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLS 617 (1045)
Q Consensus 540 ~~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LS 617 (1045)
. -.+||..|+. .+.+..|+.|++.-.. +... +..+...+..+++.. ...++++ .||
T Consensus 384 ~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~v~-----~LS 441 (530)
T COG0488 384 T--------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKPVG-----VLS 441 (530)
T ss_pred c--------eEEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCchh-----hcC
Confidence 1 2479999976 3347789999986432 1111 345778899999863 4566664 799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
||||.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|++. ..|||+||||.. -+-..+++++.+.+ +-..+
T Consensus 442 GGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEF 516 (530)
T ss_pred HhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEc
Confidence 99999999999999999999999999999999999999999876 579999999975 46778999999974 33334
Q ss_pred ecC
Q 043954 698 SGM 700 (1045)
Q Consensus 698 ~G~ 700 (1045)
.|.
T Consensus 517 ~g~ 519 (530)
T COG0488 517 EGG 519 (530)
T ss_pred CCC
Confidence 454
No 376
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=257.57 Aligned_cols=202 Identities=22% Similarity=0.407 Sum_probs=171.5
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccccceEeecC---CccCCC
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK----TFARISGYCEQT---DIHSPQ 563 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ 563 (1045)
.++|+||++++||+++|.|-=|||+|-|+++|.|..+ +.+|+|.+||++.... ..+.-++|||.| +-++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 5899999999999999999999999999999999765 4689999999986432 234568999976 467889
Q ss_pred CCHHHHHHHHhhhcCC-C-CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 043954 564 ITVEESVKFSAWLRLP-P-EIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMD 640 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLD 640 (1045)
++|+||+.++...+.. . -++....++.+++..+.+++. ...+..++ .||||.+|||.|||.|..+|++||||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-----~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh-----cCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999999987322211 1 355666667789999999885 33556664 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 641 EPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 641 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|||.|.|.-++.+|.++|++++++|++||++|.+.. |+..+||||+||. +|+++..=+.
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~ 485 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDR 485 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEecc
Confidence 999999999999999999999999999999999985 8999999999998 5899875443
No 377
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=1.6e-26 Score=223.23 Aligned_cols=195 Identities=25% Similarity=0.422 Sum_probs=166.9
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHH
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
-|-.+|+.+..||+.-++|||||||||||-.++|..+ -+|+|.++|.+... ....|..+|..|+..-.+.+.|.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 4778999999999999999999999999999999986 48999999998753 34556779999887777778898
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-----CC--CeEEEe
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS-----NP--SIIFMD 640 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~-----~p--~illLD 640 (1045)
..+.+. .| .+++...++++.+.++|.+...+.+ +.|||||=|||-+|-..+. || ++|+||
T Consensus 91 ~YL~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 91 HYLTLH----QP----DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhhhhc----Cc----hHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 887653 22 3455566888999999988877776 4799999999999987653 44 599999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 641 EPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 641 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
||.++||...+..+-++|.+++++|.+||++.||.+ ...+.+|++.+|++ |++...|..++
T Consensus 158 EP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 158 EPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhc-CeEEeecchhh
Confidence 999999999999999999999999999999999998 68899999999985 89999998764
No 378
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=4e-25 Score=257.64 Aligned_cols=198 Identities=24% Similarity=0.339 Sum_probs=156.5
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
+..++++|++..-+ +.+..|++.|+.+++||.+.|.||||||||||+|+|+|+.+.+ +|+|..-
T Consensus 390 ~~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P-- 453 (604)
T COG4178 390 DHGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP-- 453 (604)
T ss_pred cceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC--
Confidence 35789999987533 2347999999999999999999999999999999999999865 5776543
Q ss_pred eCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-CCCCCCCHH
Q 043954 541 PKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGI-PGQSGLSTE 619 (1045)
Q Consensus 541 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~-~~~~~LSgG 619 (1045)
....+-|+||.+.+ |..|.||-+.++... ...++ +.+.++|.++||.+..++.-++ +..+.||+|
T Consensus 454 ------~~~~~lflpQ~PY~-p~GtLre~l~YP~~~---~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G 519 (604)
T COG4178 454 ------ADSALLFLPQRPYL-PQGTLREALCYPNAA---PDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519 (604)
T ss_pred ------CCCceEEecCCCCC-CCccHHHHHhCCCCC---CCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence 11235799997765 455999999886421 12333 3377889999998877665332 223579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
||||+++||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|+|-+.|++. +....++.+-+.+
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~ 588 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeecc
Confidence 9999999999999999999999999999999999999998743 3799999999975 5566677666653
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=9.3e-26 Score=242.96 Aligned_cols=241 Identities=22% Similarity=0.280 Sum_probs=174.4
Q ss_pred CCCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccc
Q 043954 415 PKMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHD 494 (1045)
Q Consensus 415 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~ 494 (1045)
++..++.++.+|+.+....++...- +.+... | +=-+++++|+.|.+... .--+..
T Consensus 287 P~l~~AqvA~~kiakle~~~~~a~~----~~~q~~--------p-~~~~lelrnvrfay~~~------------~FhvgP 341 (546)
T COG4615 287 PTLLTAQVAFNKIAKLELAPYKADF----PRPQAF--------P-DWKTLELRNVRFAYQDN------------AFHVGP 341 (546)
T ss_pred hHHHHHHHHHHHHHHhhcCCccccC----CCCCcC--------C-cccceeeeeeeeccCcc------------cceecc
Confidence 3455677788888766543221111 111000 0 01257889998876421 134788
Q ss_pred ccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHH
Q 043954 495 ITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVK 571 (1045)
Q Consensus 495 vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~ 571 (1045)
||++|++||++-|+|.||||||||+++|+|++. |.+|+|++||+|++. +++|+..+-|+-|..+++.+--
T Consensus 342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----- 414 (546)
T COG4615 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----- 414 (546)
T ss_pred eeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC-----
Confidence 999999999999999999999999999999998 679999999999765 3466666666765555543211
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 043954 572 FSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAA 651 (1045)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~ 651 (1045)
++.. ...+.++..++++++.+...-.-|+-..-.||.|||||+++-.||+-+.+|+++||=-+.-||.-+
T Consensus 415 -------~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFR 484 (546)
T COG4615 415 -------PEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFR 484 (546)
T ss_pred -------CccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHH
Confidence 1111 112346777888877654333333222347999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 652 AIVMRAVK-NVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 652 ~~i~~~l~-~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
+.+.+.+- .+++.|+||+.+|||.. -+..+||++.+. +|++++.-+
T Consensus 485 R~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~-~G~~~e~tg 531 (546)
T COG4615 485 REFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMR-NGQLSELTG 531 (546)
T ss_pred HHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHh-cCceeeccc
Confidence 99977655 55667999999999954 688999999997 589987654
No 380
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=4.2e-25 Score=240.52 Aligned_cols=188 Identities=15% Similarity=0.202 Sum_probs=130.0
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC---C--------C---eEEE--------EEEECCeeC--
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT---G--------G---IIQG--------EIRVGGYPK-- 542 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~---~--------~---~~~G--------~I~~~g~~~-- 542 (1045)
+++.++++++ |++++|+||||||||||+++|++... + + +.+| +|.+++.+.
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~ 87 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRF 87 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCcc
Confidence 3456888887 78999999999999999999983210 0 0 1123 555555321
Q ss_pred ----CcccccccceEeecCCccCC-CCCHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 043954 543 ----VQKTFARISGYCEQTDIHSP-QITVEESVKFSAWLRLPPEIDS-ETKARFVEEVIETIELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 543 ----~~~~~~~~~~~v~q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 616 (1045)
.....++.+++++|+..+.+ ..|..|...+............ ..... ++.+.+++.+..+..+ ..|
T Consensus 88 ~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~~~-----~~l 159 (243)
T cd03272 88 PIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQEM-----QQL 159 (243)
T ss_pred CCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhccccccccc-----ccc
Confidence 11234566789988776666 4577776665544332211000 00011 2223344544444444 479
Q ss_pred CHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 617 STEQRKRLTIAVELVS----NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
|||||||++|||+|+. +|+++++||||+|||+.+++.+.+.|+++++ +.++|+++|++ ++.+.||++++|+
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999865 78888888874 5789999999996
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=8.9e-26 Score=239.21 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=134.2
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCH
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
+++++++++++ ++++|+||||||||||+++|.- ++|.+.. ...++.+++++|+....+.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCCCCCCCCce
Confidence 35678999987 8999999999999999999972 2232211 1122457889998888888899
Q ss_pred HHHHHHHhhhcCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh----CCC
Q 043954 567 EESVKFSAWLRLP-----PEIDSETKAR--FVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS----NPS 635 (1045)
Q Consensus 567 ~e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~----~p~ 635 (1045)
+|++.+....... .....+.... ..+++++.++|++..++.++ .||+|||||++|||+++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8887665432100 0011111000 12455667788877777763 699999999999999974 479
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 636 IIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 636 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
+++|||||+|||+.++..+.+.+++++ ++.|+|++||++ ++.+.||++++|..
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999985 468899999985 57899999999975
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.91 E-value=1.2e-24 Score=229.38 Aligned_cols=167 Identities=19% Similarity=0.212 Sum_probs=124.3
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHh----CCCCCCeEEEEEEECCeeCCcccccccceEeecCC-----ccCCCCCH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLS----GRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTD-----IHSPQITV 566 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~----G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~-----~~~~~lTv 566 (1045)
++++.+| +++|+||||||||||+++|. |..+ +..|.+..+.........+..+++++|++ .....+|+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 4556677 99999999999999999995 7665 33455542111122223345678888876 33344588
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH------HHHHHHHhhCCCeEEEe
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR------LTIAVELVSNPSIIFMD 640 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR------v~ia~aL~~~p~illLD 640 (1045)
.||+.+. ..++ +++.+ +..+ +.||+||||| ++|||+++.+|+++++|
T Consensus 94 ~~~~~~~---------~~~~----~~~~~---------~~~~-----~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 94 LENVIFC---------HQGE----SNWPL---------LDMR-----GRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred hhceeee---------chHH----HHHHH---------hcCc-----cccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 8887542 1111 22222 3333 4799999996 78999999999999999
Q ss_pred CCCCCCCHHHHH-HHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 641 EPTSGLDARAAA-IVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 641 EPtsgLD~~~~~-~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|||++||+.++. .+.+.|++++++ |+|+|++||++. ..+.+|+++.|.++|+
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 999999999999 999999999776 889999999964 5678999999987764
No 383
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=1.1e-24 Score=238.04 Aligned_cols=179 Identities=15% Similarity=0.233 Sum_probs=133.7
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe-eCCc-----ccccccceEeecCC---------ccCCCCCH
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY-PKVQ-----KTFARISGYCEQTD---------IHSPQITV 566 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~-~~~~-----~~~~~~~~~v~q~~---------~~~~~lTv 566 (1045)
..+++|+||||||||||+++|++...+ ...|+++..|. ++.. ......+++++|++ .+.+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~-~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI-TNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc-cccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 449999999999999999999997652 12467887776 3211 11234678888874 34567899
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--------------------ccccccccCCCCCCCCHHHHHHHHH
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELD--------------------DIKDSLVGIPGQSGLSTEQRKRLTI 626 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~--------------------~~~~~~vg~~~~~~LSgGqrqRv~i 626 (1045)
.+++......+.... .++...+.++++++.+++. +..+..+ ..||||||||++|
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~-----~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL-----TELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc-----cccCHHHHHHHHH
Confidence 988865432110000 1222345688899999986 2223333 4799999999999
Q ss_pred HHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 627 AVELV----SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 627 a~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
||+|+ .+|+++++||||+|||+.++..+.+.|+++. +|.++|++||++ ++.+.+|+++-+.
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 99998 5789999999999999999999999999985 489999999994 6788999998876
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.91 E-value=2.3e-23 Score=268.88 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=109.3
Q ss_pred cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 043954 560 HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELV---SNPS 635 (1045)
Q Consensus 560 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~---~~p~ 635 (1045)
.+...||.|+|.++..-......+.++..+++ ++++.+||.+. .+..+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999886542211111233344556 47888999875 57665 379999999999999998 6999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCCc
Q 043954 636 IIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLGR 703 (1045)
Q Consensus 636 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 703 (1045)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. ..+.+|++++|. .+|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999986 348999999995 2589999998753
No 385
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=7.5e-24 Score=225.55 Aligned_cols=180 Identities=21% Similarity=0.149 Sum_probs=121.6
Q ss_pred ccccceec-CceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe-e-CCcccccccceEeecCCccCCCCCHHHH
Q 043954 493 HDITGAFR-PGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY-P-KVQKTFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 493 ~~vs~~i~-~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~-~-~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
++++|... +|++++|+||||||||||+++|++... ++..+....+.. + .........+++++|++.... ++...
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 55666543 589999999999999999999996432 122333333210 1 111223345788887653211 11111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh----------CCCeEEE
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS----------NPSIIFM 639 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~----------~p~illL 639 (1045)
. ..+.++..+.+ .++..++.+..+..+ ..||||||||++|||+|+. +|++++|
T Consensus 95 ---------~-gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 ---------R-GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred ---------c-CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 0 22222221111 123333444445544 4799999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 640 DEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 640 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
||||+|||+.+...+.+.|++++++|+|+|++||++. .+...+|+++++++||
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999999877999999999986 4667789999998655
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=7.1e-23 Score=229.37 Aligned_cols=222 Identities=18% Similarity=0.311 Sum_probs=184.4
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
...++++|++..-. .+.+.++||||+++.||+++|.|-+|-|-+.|+.+|+|..+ +.+|+|.++|+
T Consensus 255 ~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~ 320 (501)
T COG3845 255 EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGK 320 (501)
T ss_pred CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCE
Confidence 45688999886421 22468999999999999999999999999999999999876 34699999999
Q ss_pred eC-C---ccc-ccccceEeecCC---ccCCCCCHHHHHHHHhhhcC----CCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 043954 541 PK-V---QKT-FARISGYCEQTD---IHSPQITVEESVKFSAWLRL----PPEIDSETKARFVEEVIETIELD-DIKDSL 607 (1045)
Q Consensus 541 ~~-~---~~~-~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ 607 (1045)
+. . ... .+.-++|||++. .+.+.+|+.||+.+...-+. ..-++..+.++..+++++.++.. ...+..
T Consensus 321 ~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~ 400 (501)
T COG3845 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP 400 (501)
T ss_pred eccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc
Confidence 86 2 222 234589999875 46789999999987654221 11245667778899999999886 233444
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEE
Q 043954 608 VGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 608 vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
+ +.||||++||+-+||+|.++|++|+..+||.|||..+.+.|.+.|.+++++|+.|++++-+++ |+++++|||.
T Consensus 401 a-----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIa 474 (501)
T COG3845 401 A-----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIA 474 (501)
T ss_pred h-----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheee
Confidence 4 479999999999999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred EEecCcEEEEecCCCc
Q 043954 688 LMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 688 ~l~~gG~~~~~G~~~~ 703 (1045)
+|. +|+++...++++
T Consensus 475 Vi~-~Gri~~~~~~~~ 489 (501)
T COG3845 475 VIY-EGRIVGIVPPEE 489 (501)
T ss_pred eee-CCceeccccccc
Confidence 998 599998887764
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=2.9e-23 Score=232.91 Aligned_cols=201 Identities=18% Similarity=0.229 Sum_probs=155.1
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
-.+.++|++|.++ .+ ..++++++|-|.+++.+|++||||||||||||++.|... |..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~-----------~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYS-----------DN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCC-----------Cc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 3567888887543 22 269999999999999999999999999999999999887 578887654332
Q ss_pred CCcccccccceEeecC--CccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCH
Q 043954 542 KVQKTFARISGYCEQT--DIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLST 618 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSg 618 (1045)
..++..|+ +.+.-..++-|++.=.. .++.+.+.+..++.++||.. ..+.++ +.||+
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~ 512 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSD 512 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhccc
Confidence 12233332 23334557777764221 11233455788999999984 455555 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
|||+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. ..++|+++||.. -+-+.++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999999775 568999999976 467788999999877777788
Q ss_pred cCC
Q 043954 699 GML 701 (1045)
Q Consensus 699 G~~ 701 (1045)
|+.
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 864
No 388
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.89 E-value=1.9e-22 Score=251.33 Aligned_cols=124 Identities=23% Similarity=0.350 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CeEE
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQRKRLTIAVELVSNP---SIIF 638 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p---~ill 638 (1045)
.+||.|++.|...+. + .....+.++.+||.. ..+..+ ..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988865332 1 112457888999975 356655 379999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCC
Q 043954 639 MDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLG 702 (1045)
Q Consensus 639 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 702 (1045)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. ++|++++.|+++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999975 457899999993 479999999863
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.2e-21 Score=243.85 Aligned_cols=124 Identities=25% Similarity=0.356 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCeEE
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQRKRLTIAVELVS---NPSIIF 638 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~---~p~ill 638 (1045)
.+||.|.+.|...+. .+ ....++++.+||.. ..+..+ +.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467777777754321 11 12456788899975 345555 4799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCC
Q 043954 639 MDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLG 702 (1045)
Q Consensus 639 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 702 (1045)
|||||+|||+.+...+++.|+++.++|.|+|+++|++. ..+.+|+++.|. ++|++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999975 457899999993 479999999863
No 390
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.87 E-value=5.7e-22 Score=224.07 Aligned_cols=207 Identities=20% Similarity=0.237 Sum_probs=157.2
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
+..+++++++..-|+ .+..+.+|+|++|+.|+-+.|.||||||||+|+|+|+|+.+ ..+|++.--..
T Consensus 431 Dn~i~~e~v~l~tPt-----------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~ 497 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT-----------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTD 497 (659)
T ss_pred cceEEeeeeeecCCC-----------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEeccc
Confidence 367899999875432 13568899999999999999999999999999999999987 35788765432
Q ss_pred eCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC------CCC
Q 043954 541 PKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIP------GQS 614 (1045)
Q Consensus 541 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~------~~~ 614 (1045)
... +.+-|+||.|.+ +..|.||-+.|...--.+ ..+....+++.+.++.++|.|..++.-|-. ...
T Consensus 498 ~~~-----~~lfflPQrPYm-t~GTLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~d 569 (659)
T KOG0060|consen 498 GGP-----KDLFFLPQRPYM-TLGTLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMD 569 (659)
T ss_pred CCC-----CceEEecCCCCc-cccchhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHh
Confidence 211 346799997765 445999999886321111 111122345777888888776655443321 224
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.||+||+||++.||.+.++|++-+|||.||++|.+.+..+.+.++++ |.|.|-+.|+.+ +.+.-|.++-|+.+|
T Consensus 570 vLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g~g 643 (659)
T KOG0060|consen 570 VLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDGRG 643 (659)
T ss_pred hcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecCCC
Confidence 69999999999999999999999999999999999999999888764 999999999976 566678888887433
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=7.7e-22 Score=221.51 Aligned_cols=212 Identities=19% Similarity=0.281 Sum_probs=139.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.+.+++++++. .++.+++|+++++.+|+.+||+|+|||||||+|++|+|...|-|..=.+..-..+.
T Consensus 75 dvk~~sls~s~-------------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~ 141 (614)
T KOG0927|consen 75 DVKIESLSLSF-------------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREI 141 (614)
T ss_pred cceeeeeeecc-------------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccC
Confidence 45666666543 35679999999999999999999999999999999999876544332333322222
Q ss_pred Cccccc-------------ccceEeecCCccC-C--CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-Ccccc
Q 043954 543 VQKTFA-------------RISGYCEQTDIHS-P--QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDIKD 605 (1045)
Q Consensus 543 ~~~~~~-------------~~~~~v~q~~~~~-~--~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L-~~~~~ 605 (1045)
...... ..+.|.-++-... + ..--.+++. .|. ...+.+..+.++.+++..+|. ++..+
T Consensus 142 ~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~----~r~-~~~d~~~~~~k~~~il~glgf~~~m~~ 216 (614)
T KOG0927|consen 142 EPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELY----ERL-DEMDNDTFEAKAAKILHGLGFLSEMQD 216 (614)
T ss_pred CCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHH----HHH-HhhCchhHHHHHHHHHHhcCCCHhHHH
Confidence 111000 0011100000000 0 000001110 010 112233334445566665653 55666
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEecCCcHHHHHhcc
Q 043954 606 SLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGR-TTVCTIHQPSIDVFEAFD 684 (1045)
Q Consensus 606 ~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~~~H~~~~~~~~~~d 684 (1045)
+.+ .++|||+|.|+++||+|..+|++|+|||||+|||.++..-+-+.|.+. .+ ++++++|.-+ .+-..|.
T Consensus 217 k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~QD-fln~vCT 287 (614)
T KOG0927|consen 217 KKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQD-FLNGVCT 287 (614)
T ss_pred HHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecchh-hhhhHhh
Confidence 666 579999999999999999999999999999999999999999888765 34 8899999754 4667899
Q ss_pred eEEEEecCcE-EEEecCCC
Q 043954 685 ELLLMKAGGR-IIYSGMLG 702 (1045)
Q Consensus 685 ~v~~l~~gG~-~~~~G~~~ 702 (1045)
+|+-|+. ++ +.|.|+-+
T Consensus 288 ~Ii~l~~-kkl~~y~Gnyd 305 (614)
T KOG0927|consen 288 NIIHLDN-KKLIYYEGNYD 305 (614)
T ss_pred hhheecc-cceeeecCCHH
Confidence 9999985 56 66777754
No 392
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=5.1e-22 Score=197.23 Aligned_cols=212 Identities=16% Similarity=0.231 Sum_probs=160.1
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCC--eEEEEEEECCeeC---Ccccccc----cceEeecC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIQGEIRVGGYPK---VQKTFAR----ISGYCEQT 557 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~--~~~G~I~~~g~~~---~~~~~~~----~~~~v~q~ 557 (1045)
+...++++||+++..||+-+++|.||||||-..|+|+|..+.. .+....++++.++ ..+..|+ .+++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 4567999999999999999999999999999999999965421 2334556666653 2223333 45788898
Q ss_pred Cc--cCCCCCHHHHHHHHhhhcCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 043954 558 DI--HSPQITVEESVKFSAWLRLPPEI---DSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS 632 (1045)
Q Consensus 558 ~~--~~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~ 632 (1045)
+. +.|.-+|...+.-......-+.. .-.-+++++-+++.++|+.+..|-.-..|. +|.-||-|+|.||.|++.
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~--ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY--ELTEGECQKVMIAIALAN 175 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc--hhccCcceeeeeehhhcc
Confidence 63 55555554444322111100000 001234567789999999988877766553 699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 633 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 633 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
+|++|+.||||+++|+.++.+|.++|.++.+. |.||++++||.. .+-+.||++-||.- |+-++.++.+
T Consensus 176 qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC-GQ~~ESa~~e 244 (330)
T COG4170 176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC-GQTVESAPSE 244 (330)
T ss_pred CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe-cccccccchh
Confidence 99999999999999999999999999999764 889999999986 57889999999984 8888888754
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.86 E-value=2.2e-21 Score=213.16 Aligned_cols=196 Identities=21% Similarity=0.315 Sum_probs=146.7
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHH
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVK 571 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 571 (1045)
|.-=.++|..||+++++||||-||||+.++|+|..+ |++|+ ..+ -.++|=||--.--...||++-+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~~-------~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EED-------LKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Ccc-------ceEeecceeecCCCCCcHHHHHH
Confidence 444456788899999999999999999999999887 56776 111 13567777544446789999886
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 043954 572 FSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAA 651 (1045)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~ 651 (1045)
-...-+... .-...++++-|+|++..|+.+. +|||||.|||+||.+|.+++++++||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 543221111 1124577888999999999984 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC---cchhHHHHHHhcC
Q 043954 652 AIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG---RHSSKLIEYFQGI 715 (1045)
Q Consensus 652 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~---~~~~~~~~~f~~~ 715 (1045)
..+.+.||+..++ ++|.+++-||.-. +--..||+++.+ |.---+|... ...+.+-.+.+.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l 556 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNL 556 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHc
Confidence 9999999999865 7899999999752 334578888885 4433333221 1233455566555
No 394
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=2e-21 Score=211.76 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=116.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee-C-Ccc--------cccccceEeecCCcc-CCCCCHHHHHHH
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP-K-VQK--------TFARISGYCEQTDIH-SPQITVEESVKF 572 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~-~-~~~--------~~~~~~~~v~q~~~~-~~~lTv~e~l~~ 572 (1045)
+++|+||||||||||+++|++... +..|+++.++.+ . ... ...-.+.|..|++.. ....++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~--~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~- 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLG--EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS- 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce-
Confidence 999999999999999999998654 224555543321 0 000 111112333332211 00111111100
Q ss_pred HhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccc---------ccCCC--------CCCCCHHHHHHHHHHHHHhhC-
Q 043954 573 SAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSL---------VGIPG--------QSGLSTEQRKRLTIAVELVSN- 633 (1045)
Q Consensus 573 ~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~---------vg~~~--------~~~LSgGqrqRv~ia~aL~~~- 633 (1045)
..+.. ...+ .+.++++++.+|+....... +.+.. ...||||||||++||++++.+
T Consensus 101 --~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 --SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred --EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 00111 1111 23356788888885321111 10101 147999999999999999875
Q ss_pred ---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 634 ---PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 634 ---p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
|++++|||||+|||+..+..+.+.|++++++|.++|++||++ ++.+.+|++++|.+++
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQ 235 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecC
Confidence 899999999999999999999999999987799999999994 5678999999998654
No 395
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=8.5e-21 Score=199.12 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=115.5
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE--CCeeC----CcccccccceEeecCCccCCCCC
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRV--GGYPK----VQKTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~--~g~~~----~~~~~~~~~~~v~q~~~~~~~lT 565 (1045)
++++++++.+| +++|+||||||||||+.+|..... |+... .|... ........+...+|+....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 46677788887 889999999999999999974221 11110 12110 00111233556666544332
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH----hhCCCeEEEeC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVEL----VSNPSIIFMDE 641 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL----~~~p~illLDE 641 (1045)
| ..... .++.++++++. .+..++.+ +.||+|||||++||++| +.+|++++|||
T Consensus 83 ---~-----------~~~~~-~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 ---N-----------PLCVL-SQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---C-----------cCCHH-HHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 01111 13446677765 55566665 47999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc---CCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 642 PTSGLDARAAAIVMRAVKNVVRT---GRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 642 PtsgLD~~~~~~i~~~l~~l~~~---g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
||+|||..++..+.+.|+++.++ +.|+++++|++. ++ ..+|+|.+|..
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i-~~~d~v~~~~~ 190 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GL-ASSDDVKVFRM 190 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cc-ccccceeEEEe
Confidence 99999999999999999998653 358999999986 34 45599999974
No 396
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.82 E-value=1.2e-21 Score=207.55 Aligned_cols=208 Identities=25% Similarity=0.359 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHH-HHhhc
Q 043954 143 ELFQACMSRELLLMKRNSFVY-VFKTAQLAITAIITMTVFIRTQMKLDLMHANFMMGSLYYAIVRLMTNGVAEL-SLTIT 220 (1045)
Q Consensus 143 ~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~~li~G~if~~~~~~~~~~~~~~~~g~lF~~~~~~~~~~~~~i-~~~~~ 220 (1045)
+|++.+++|+++..+|||... ..+++..++.++++|.+|.+++ + +.+..++.|++++.+...++...... .....
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG--N-SQDGFNRPGLIFGSIIFSFFSSISGSSISFER 77 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc--c-cccccccceeeehhhHHhhhhhcccchhhhhh
Confidence 489999999999999999888 9999999999999999999654 2 22223567888888877775444444 67788
Q ss_pred cchhhhhhhcCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 043954 221 RLPVVYRQRSFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTF 300 (1045)
Q Consensus 221 er~vf~rE~~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~ 300 (1045)
|+..+.||+.++.|++.+|.+||.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~ 155 (210)
T PF01061_consen 78 ERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALF 155 (210)
T ss_pred hccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccch
Confidence 999999999999999999999999999999999999999999999999988 788899999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhhhcc
Q 043954 301 QTMVIATTVGSLALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISLNEF 355 (1045)
Q Consensus 301 ~~~~~A~~i~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~nef 355 (1045)
++.+.+..+.+++..++++++|.++|.+.+|+|++|+.|+||++|+.|++..++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 156 PSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999998875
No 397
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.7e-20 Score=200.98 Aligned_cols=187 Identities=20% Similarity=0.283 Sum_probs=140.6
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCC--ccCCCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTD--IHSPQI 564 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~--~~~~~l 564 (1045)
+.++++++++|-|.-...++|+||||.||||||++|.|.+. |..|+.+-| .+-.+|+..|+. .+-..-
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn--------hrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN--------HRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc--------ceeeeechhhhhHHhhcccc
Confidence 35789999999999999999999999999999999999887 456765432 233578877753 344455
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 043954 565 TVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 644 (1045)
Q Consensus 565 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPts 644 (1045)
|..|.|.-.. +++.. .+...+-.+||...++|+- ...||||||-||++|..-+..|+||||||||+
T Consensus 668 tp~EyLqr~F------Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 668 TPVEYLQRKF------NLPYQ----EARKQLGTFGLASHAHTIK----IKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred CHHHHHHHhc------CCChH----HHHHHhhhhhhhhccceEe----eeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 6667664211 12222 2445678889987777763 25799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 645 GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
+||.++...+.+.|++. ...||+++|+-.. +.+.-..+.|+.+.|.---.|+.
T Consensus 734 NLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdGdF 786 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDGDF 786 (807)
T ss_pred CcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhccccH
Confidence 99999999999988875 5689999999653 44444567777655543344543
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.81 E-value=1.5e-19 Score=179.54 Aligned_cols=206 Identities=23% Similarity=0.330 Sum_probs=151.3
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
-.+++.++.|+++. ..+++-|+|++++.|....++|.||||||||||+|+|..-.+ .|.|.++|.+
T Consensus 12 ~aievsgl~f~y~~------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEeccc------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcC
Confidence 45778888888753 237999999999999999999999999999999999975432 3899999976
Q ss_pred CCc--------------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 043954 542 KVQ--------------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSL 607 (1045)
Q Consensus 542 ~~~--------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ 607 (1045)
.-. ..+.+..+.-- +-.+....++.+.| |+.. ..+. + +-+++++.+.+.-...
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp-~---Rre~LI~iLDIdl~WR-- 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP-E---RREKLIDILDIDLRWR-- 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh-h---HhhhhhhheeccceEE--
Confidence 311 01222222211 22233345665443 4321 1122 2 2345666666643222
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceE
Q 043954 608 VGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDEL 686 (1045)
Q Consensus 608 vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v 686 (1045)
. +.+|-|||+||.|+..|++.=++|+|||-|-.||..++..+++.+++-.++ |.||+..||--+ -+.....++
T Consensus 145 m-----HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl 218 (291)
T KOG2355|consen 145 M-----HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHL 218 (291)
T ss_pred E-----eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhE
Confidence 1 369999999999999999999999999999999999999999999988764 899999999876 467788899
Q ss_pred EEEecCcEEEEecCC
Q 043954 687 LLMKAGGRIIYSGML 701 (1045)
Q Consensus 687 ~~l~~gG~~~~~G~~ 701 (1045)
+.++ +|+++..-+.
T Consensus 219 ~yi~-~Gkl~~~l~~ 232 (291)
T KOG2355|consen 219 VYIK-SGKLVDNLKY 232 (291)
T ss_pred EEec-CCeeeecccc
Confidence 9997 6898865443
No 399
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.81 E-value=3e-21 Score=204.52 Aligned_cols=209 Identities=24% Similarity=0.468 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 043954 789 EQYLACLWKQHLSYWRSPEYN-MARFVFMIFAALLFGAVVWQKGKEINKEEDLIVILGSMYIAVIFLGVNYCSTVLPYVA 867 (1045)
Q Consensus 789 ~q~~~l~~R~~~~~~R~~~~~-~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 867 (1045)
+|++.+++|+++..+|||.+. ..+++..++.++++|.+|.+++++ .++. ++.|+++..+.+..+....+......
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNS---QDGF-NRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccc---cccc-ccceeeehhhHHhhhhhcccchhhhh
Confidence 599999999999999999888 999999999999999999988732 2222 45677777766666555555545677
Q ss_pred HhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043954 868 TERTVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVSV 947 (1045)
Q Consensus 868 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1045)
.||..+.||+.++.|++.+|.+|+.+.+++..++.++++..+.|++.|++.+ +++.+++.+++..+++.++|.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999887 67777777888888889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHh
Q 043954 948 CPGVEIASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQY 1003 (1045)
Q Consensus 948 ~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef 1003 (1045)
+++...+..+.+++..+++++||.++|.+.+|+|++|+.|+||++|++|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
No 400
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.3e-20 Score=207.38 Aligned_cols=185 Identities=19% Similarity=0.287 Sum_probs=126.0
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecC-CccCCCCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQT-DIHSPQIT 565 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~-~~~~~~lT 565 (1045)
+.+.+|++-++++..|...||+|+||+|||||||+|+. |.|. +.+..++ .+ ..+++-. +.+....+
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~--~f~veqE-~~--g~~t~~~~~~l~~D~~ 157 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVS--GFHVEQE-VR--GDDTEALQSVLESDTE 157 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcC--ccCchhh-ee--ccchHHHhhhhhccHH
Confidence 46789999999999999999999999999999999985 2221 1111111 11 1122211 12222223
Q ss_pred HHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSE-TKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPT 643 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPt 643 (1045)
+.+-+.-.. .+... ++.+...++|..+|..+. ....+ +.||||-|-|+++||||..+|+||+|||||
T Consensus 158 ~~dfl~~e~------~l~~~~~l~ei~~~~L~glGFt~emq~~pt-----~slSGGWrMrlaLARAlf~~pDlLLLDEPT 226 (582)
T KOG0062|consen 158 RLDFLAEEK------ELLAGLTLEEIYDKILAGLGFTPEMQLQPT-----KSLSGGWRMRLALARALFAKPDLLLLDEPT 226 (582)
T ss_pred HHHHHHhhh------hhhccchHHHHHHHHHHhCCCCHHHHhccc-----cccCcchhhHHHHHHHHhcCCCEEeecCCc
Confidence 333322111 11111 223334447888887643 33444 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEE-EEecC
Q 043954 644 SGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI-IYSGM 700 (1045)
Q Consensus 644 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~-~~~G~ 700 (1045)
+.||..+..-+.+.|+.+ +.|+|+++||-+ -+-..|..|+-++. -++ .|.|+
T Consensus 227 NhLDv~av~WLe~yL~t~---~~T~liVSHDr~-FLn~V~tdIIH~~~-~kL~~YkGN 279 (582)
T KOG0062|consen 227 NHLDVVAVAWLENYLQTW---KITSLIVSHDRN-FLNTVCTDIIHLEN-LKLDYYKGN 279 (582)
T ss_pred ccchhHHHHHHHHHHhhC---CceEEEEeccHH-HHHHHHHHHHHHhh-hhhhhhcCc
Confidence 999999999999988775 489999999954 45577888888863 343 35564
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.79 E-value=3.2e-19 Score=188.07 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=108.2
Q ss_pred ccccccceecCce-EEEEecCCCCCHHHHHHHHh--------CCCCCCeEEEEEEECCeeCCcccccccceEeecCCccC
Q 043954 491 LLHDITGAFRPGI-LTALMGVSGAGKTTLMDVLS--------GRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHS 561 (1045)
Q Consensus 491 iL~~vs~~i~~Ge-~~~i~G~sGaGKSTLl~~l~--------G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~ 561 (1045)
-..++|+++.+|+ +++|+||||||||||||.|+ |..-+ ... ...++|+.|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp--~~~--------------~~~~~~~~~~~~-- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP--AAE--------------GSSLPVFENIFA-- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc--ccc--------------cccCcCccEEEE--
Confidence 3557999999995 89999999999999999998 32211 100 001233333110
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 043954 562 PQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDE 641 (1045)
Q Consensus 562 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDE 641 (1045)
.++..+..+..+ +.+|+|||||+.|+++ +.+|+++++||
T Consensus 78 -----------------------------------~lg~~~~l~~~~-----s~fs~g~~~~~~i~~~-~~~p~llllDE 116 (200)
T cd03280 78 -----------------------------------DIGDEQSIEQSL-----STFSSHMKNIARILQH-ADPDSLVLLDE 116 (200)
T ss_pred -----------------------------------ecCchhhhhcCc-----chHHHHHHHHHHHHHh-CCCCcEEEEcC
Confidence 011111111111 3699999999999988 48999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 642 PTSGLDARAAAIVM-RAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 642 PtsgLD~~~~~~i~-~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||+|||+.+...+. ..++++.+.|.++|++||+. ++.+.+|+++.+++ |++.+++
T Consensus 117 p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~-g~l~~~~ 172 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN-ASMEFDP 172 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE-EEEEEec
Confidence 99999999999996 47888877799999999973 57899999999984 8998774
No 402
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.78 E-value=3.2e-19 Score=198.69 Aligned_cols=181 Identities=20% Similarity=0.308 Sum_probs=132.4
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
..+...+||+|+||-.+.|+||||||||+|.++|.|+.| ...|.... .....+-|+||.+..- ..|.||
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP--vy~g~L~~--------P~~~~mFYIPQRPYms-~gtlRD 563 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP--VYNGLLSI--------PRPNNIFYIPQRPYMS-GGTLRD 563 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc--ccCCeeec--------CCCcceEeccCCCccC-cCcccc
Confidence 458899999999999999999999999999999999987 22333221 1223478999987665 668888
Q ss_pred HHHHHhhhc--CCCCCCHHHHHHHHHHHHHHcCCCccccccccCC----CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 043954 569 SVKFSAWLR--LPPEIDSETKARFVEEVIETIELDDIKDSLVGIP----GQSGLSTEQRKRLTIAVELVSNPSIIFMDEP 642 (1045)
Q Consensus 569 ~l~~~~~~~--~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~----~~~~LSgGqrqRv~ia~aL~~~p~illLDEP 642 (1045)
.+.+.-... ......+ +..+.+++.+.|++...+-.|-. ...-||||||||+++||.+.++|+.-+|||.
T Consensus 564 QIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred eeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 887642110 0012222 23556666666665554433321 1135999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 643 TSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 643 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
||+.....+..+.+..++ .|.+.|-++|+|+ +.+.-..++-.
T Consensus 640 TsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred hcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHHhc
Confidence 999999999998888765 3899999999998 45554444444
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.78 E-value=6.5e-19 Score=193.87 Aligned_cols=168 Identities=25% Similarity=0.401 Sum_probs=124.0
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---ccc-------------------ccceEeec
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---TFA-------------------RISGYCEQ 556 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~~~-------------------~~~~~v~q 556 (1045)
.++|++++|+||||-||||-+|+|+|...|. -|+ .++.+-.+. .++ ....||.-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN--LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN--LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC--CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 4689999999999999999999999976642 232 122111000 000 01122221
Q ss_pred CCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCe
Q 043954 557 TDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSI 636 (1045)
Q Consensus 557 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~i 636 (1045)
-+..+ ..||.|-|.-. ..+-..+++++.++|.+..|+-+. .|||||.||++||.++++++++
T Consensus 173 iPk~~-KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 173 IPKVV-KGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHHh-cchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCE
Confidence 12222 23666655321 112246889999999999999884 7999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHH-hcceEEEEe
Q 043954 637 IFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFE-AFDELLLMK 690 (1045)
Q Consensus 637 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~ 690 (1045)
+++|||||-||...+....+.++++++.+++||++-||+. +.. +.|-+.++-
T Consensus 235 Y~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa--vLD~lsD~vhI~Y 287 (591)
T COG1245 235 YFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA--VLDYLSDFVHILY 287 (591)
T ss_pred EEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH--HHHHhhheeEEEe
Confidence 9999999999999999999999999988999999999975 444 467777775
No 404
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.3e-18 Score=194.67 Aligned_cols=198 Identities=20% Similarity=0.267 Sum_probs=150.4
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
+..+++.++++.++. +.-+++.+++.+++.-+..+++|+||+||||++|++.|... |..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 445778888875532 22268999999999999999999999999999999999765 4577765543
Q ss_pred eCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 043954 541 PKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 541 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 619 (1045)
|..++|-.|...-+..+.|.+- .+....+ +...+++ +++-+..+||+. .+...+ .+||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~~ee----~r~hl~~~Gl~g~la~~si-----~~LSGG 486 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKTEEE----IRRHLGSFGLSGELALQSI-----ASLSGG 486 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCCHHH----HHHHHHhcCCCchhhhccc-----cccCCc
Confidence 4557888887665545555443 2322332 2223332 566788899964 333333 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
||-||++|.....+|.+|+|||||+.||..+-..+.+.|+.+ +..||++||+.+ -+-..|+.+.+.++ |++.
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt 558 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVT 558 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEE
Confidence 999999999999999999999999999999999999999876 568999999965 46678999999984 6664
No 405
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.77 E-value=2.5e-18 Score=177.10 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 616 LSTEQRKRLTIAVELV----SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
||||||||++|||+++ .+|+++++|||+++||+..+..+.+.|++++++|+++|+++|++. ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 5678999999975
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=188.74 Aligned_cols=182 Identities=27% Similarity=0.363 Sum_probs=135.9
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC------CCeEEEEEEECCeeCCcccccccceEeecC-Cc
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT------GGIIQGEIRVGGYPKVQKTFARISGYCEQT-DI 559 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~------~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~-~~ 559 (1045)
....+|+|||++++||++++|+|+|||||||||++|.|... ..|++|.|.+--.. ..+.+|-+ +.
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep 465 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEP 465 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCccccc
Confidence 34679999999999999999999999999999999999432 12567777653211 23444433 22
Q ss_pred cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 043954 560 HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFM 639 (1045)
Q Consensus 560 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illL 639 (1045)
-+..-|+.|.+.- ...+. ....++++.+|+.+..-..- -.++||-|||.|..||.++...|.+++.
T Consensus 466 ~f~~~tilehl~s-----~tGD~------~~AveILnraGlsDAvlyRr---~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 466 EFGEVTILEHLRS-----KTGDL------NAAVEILNRAGLSDAVLYRR---KFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccCchhHHHHHhh-----ccCch------hHHHHHHHhhccchhhhhhc---cHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 2335577777631 11111 12457888899875422211 1247999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHh--cceEEEEecC
Q 043954 640 DEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEA--FDELLLMKAG 692 (1045)
Q Consensus 640 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~--~d~v~~l~~g 692 (1045)
||--|.||+.|+..+.+-|.+++++ |.|.+++||+|+ +.+. -|+++++.-|
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE--v~~AL~PD~li~vgYg 585 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE--VGNALRPDTLILVGYG 585 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH--HHhccCCceeEEeecc
Confidence 9999999999999999999999976 999999999985 4544 4888887653
No 407
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=1.2e-17 Score=177.18 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CEEEEEecCCcHHHHHhcc--e
Q 043954 614 SGLSTEQRKRLTIAVEL----VSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-G-RTTVCTIHQPSIDVFEAFD--E 685 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL----~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tvi~~~H~~~~~~~~~~d--~ 685 (1045)
..||||||||+.++++| +.+|+++++||||+|||+.++..+.+.|++++++ | .++|++||+.. +..+.+| +
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~~ 203 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKMT 203 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCceE
Confidence 47999999999877554 5899999999999999999999999999999876 5 47999999875 4556665 7
Q ss_pred EEEEecCcE
Q 043954 686 LLLMKAGGR 694 (1045)
Q Consensus 686 v~~l~~gG~ 694 (1045)
+++|.+ |+
T Consensus 204 v~~l~~-g~ 211 (213)
T cd03277 204 VLCVYN-GP 211 (213)
T ss_pred EEEEec-Cc
Confidence 777874 54
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=2e-17 Score=193.99 Aligned_cols=126 Identities=26% Similarity=0.418 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CeEEE
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNP---SIIFM 639 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p---~illL 639 (1045)
.|||.|...|.... +. . .+.-+.|..+||.-. ..|.+. ..|||||.|||-||.+|.++. .+++|
T Consensus 783 ~MTveEA~~FF~~~------p~--I-~rkLqtL~dVGLgYi---~LGQpa-tTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------PK--I-ARKLQTLVDVGLGYI---KLGQPA-TTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------hH--H-HHHHHHHHHcCcceE---ecCCcc-ccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36777777765421 11 1 123345666787532 345444 379999999999999999888 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE-----ecCcEEEEecCCCc
Q 043954 640 DEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM-----KAGGRIIYSGMLGR 703 (1045)
Q Consensus 640 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l-----~~gG~~~~~G~~~~ 703 (1045)
||||+||-....+++++.|.+|.++|.|||++-|++ ++.+.+|.|+-| ++||+++..|++++
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPee 916 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEE 916 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHH
Confidence 999999999999999999999999999999999986 589999999998 35799999999853
No 409
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.73 E-value=3.6e-17 Score=212.05 Aligned_cols=125 Identities=23% Similarity=0.363 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCeEEE
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSN---PSIIFM 639 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~---p~illL 639 (1045)
.|||.|.+.|... . .+-.+.-+.|..+||.-. ..|.+. ..|||||.||+-||..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~------~---~~i~~~L~~L~~vGLgYl---~LGq~~-~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF------L---KKIQKPLQALIDNGLGYL---PLGQNL-SSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc------c---HHHHHHHHHHHHcCCCee---eCCCcC-CccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4677777766421 0 112234466777888643 234433 37999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCC
Q 043954 640 DEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLG 702 (1045)
Q Consensus 640 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 702 (1045)
||||+||++...+.+++.|++|.+.|.|||++.|++ ++.+.+|.++-|- +||++++.|+++
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHH
Confidence 999999999999999999999999999999999996 5889999999994 478999999985
No 410
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.6e-17 Score=182.24 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 615 GLSTEQRKRLTIAVELVS----NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.||||||||+++|++++. +|+++++||||++||+.+...+.+.++++.+ +.|+|+++|++. +.+.+|+++.+.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999975 568999999998
Q ss_pred cC
Q 043954 691 AG 692 (1045)
Q Consensus 691 ~g 692 (1045)
++
T Consensus 247 ~~ 248 (276)
T cd03241 247 KE 248 (276)
T ss_pred Ee
Confidence 64
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.72 E-value=9.7e-18 Score=175.93 Aligned_cols=135 Identities=15% Similarity=0.175 Sum_probs=100.2
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .++.|.+.+++.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence 45778887765 79999999999999999999998431 11234333211 25567778899999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
|+.++.. ...++ .++++++++.+++ .+|+++++||||+|+|+
T Consensus 79 ~l~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9976431 11222 2456777775542 69999999999999999
Q ss_pred HHHHHHH-HHHHHHHHcCCEEEEEecCCc
Q 043954 649 RAAAIVM-RAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 649 ~~~~~i~-~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.....+. ..++++.+.|.++|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9998775 478888877999999999975
No 412
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.71 E-value=2.2e-17 Score=167.99 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 615 GLSTEQRKRLTIAVELVS----NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.++++.++|.++|++||++. +.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999988766889999999964 677899999996
Q ss_pred c
Q 043954 691 A 691 (1045)
Q Consensus 691 ~ 691 (1045)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 413
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.69 E-value=4.3e-17 Score=173.93 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=112.8
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccce-EeecCCccCCCCCHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISG-YCEQTDIHSPQITVE 567 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~-~v~q~~~~~~~lTv~ 567 (1045)
..+.+|++++.++|++++|.||||+|||||++.++-. .....+| |||.+....+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe-----
Confidence 4589999999999999999999999999999999710 0111223 5555322111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCeEEEeCC---
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVEL--VSNPSIIFMDEP--- 642 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL--~~~p~illLDEP--- 642 (1045)
.++++++.+++.+.. . +++|.|++|++.+++++ +.+|++++||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344555654322 2 47999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 643 TSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 643 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|++||+..... ..++.+.+ .|.++|++||+ .++.+.+|++..++ +|++...+.
T Consensus 122 T~~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~-~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVK-NLHVTALTD 175 (222)
T ss_pred CChHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeE-EEEEEEEEe
Confidence 99999988754 33355544 48999999996 46889999999897 488877664
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.64 E-value=8.8e-16 Score=192.01 Aligned_cols=134 Identities=21% Similarity=0.359 Sum_probs=106.6
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 043954 561 SPQITVEESVKFSAWLRLPPEID------SETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSN 633 (1045)
Q Consensus 561 ~~~lTv~e~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~ 633 (1045)
+..+||.|.+.|...+..+.... -++..++++ .++.+||.+. .|+.++ .|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhC
Confidence 34679999988855443221100 012234443 6778888765 677764 7999999999999999999
Q ss_pred C--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE------ecCcEEEEecCCCc
Q 043954 634 P--SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM------KAGGRIIYSGMLGR 703 (1045)
Q Consensus 634 p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l------~~gG~~~~~G~~~~ 703 (1045)
| ++++|||||+|||+.....+.+.|++++++|.|||+++|++. ....+|++++| . +|++++.|++++
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~--~i~~aD~vi~LgpgaG~~-~G~iv~~g~~~e 582 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED--TIRAADYIVDIGPGAGVH-GGEVVASGTPEE 582 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEeccccCCC-CCEEeeccCHHH
Confidence 7 899999999999999999999999999888999999999975 34579999999 6 699999998653
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7e-17 Score=175.74 Aligned_cols=201 Identities=18% Similarity=0.246 Sum_probs=137.3
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCC---CCCe----EEEEEEECCeeCCc----ccccccceEee
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGI----IQGEIRVGGYPKVQ----KTFARISGYCE 555 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~---~~~~----~~G~I~~~g~~~~~----~~~~~~~~~v~ 555 (1045)
.++.++.|-|+.|-.|...+|+||||-||||||+-|+.+. ++.. .+-+|..+..+... .+. +....+.
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~-kRl~lLe 353 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADK-KRLALLE 353 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhH-HHHHHHH
Confidence 3467899999999999999999999999999999999853 2211 12333333332100 011 1111111
Q ss_pred cC-----CccCCCCCHHHHHHHH-hhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHH
Q 043954 556 QT-----DIHSPQITVEESVKFS-AWLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAV 628 (1045)
Q Consensus 556 q~-----~~~~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~ 628 (1045)
.+ ..--...|+.|-+.-. ..+|.- .....++++..++.-||.+.- .+++. ...|||-|-||++||
T Consensus 354 ee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskEMQ~rPt-----~kFSGGWRMRvSLAR 425 (807)
T KOG0066|consen 354 EEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKEMQERPT-----TKFSGGWRMRVSLAR 425 (807)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChhHhcCCc-----cccCCceeeehhHHH
Confidence 11 1112345777666422 233321 222234556788888887643 34433 469999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 629 ELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 629 aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
||..+|-+|.|||||+.||.....-+-+.|+.+. +|.++++|+-. .+-..|..|+.|+...-..|.|.
T Consensus 426 ALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 426 ALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred HHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcch
Confidence 9999999999999999999999888888888873 69999999976 46788999999985333345554
No 416
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1.2e-15 Score=190.44 Aligned_cols=133 Identities=22% Similarity=0.357 Sum_probs=102.8
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 043954 562 PQITVEESVKFSAWLRLPPEIDS------ETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSNP 634 (1045)
Q Consensus 562 ~~lTv~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p 634 (1045)
-.|||.|.+.|...+..+..... .+..+++ +.+..+||... .++.+ .+|||||+|||.||++|..+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 35789999888765432211000 1112222 23566777654 56665 479999999999999999986
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCC
Q 043954 635 --SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLG 702 (1045)
Q Consensus 635 --~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 702 (1045)
++++|||||+|||+.+...+.+.|++++++|.|||+++|+++ ....||++++|. ++|++++.|+++
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~--~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~ 579 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE--TIRAADYVIDIGPGAGIHGGEVVASGTPE 579 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCEEEEecccccCCCCEEeeccCHH
Confidence 899999999999999999999999999888999999999975 456899999992 379999999864
No 417
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.63 E-value=3.1e-16 Score=165.64 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMR-AVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.++++++ |++.+.+++.+|+++++||||+|||+.....+.. .++.+.+.+.++|++||++ ++.+.+|++..++. |
T Consensus 91 ~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~-~ 166 (202)
T cd03243 91 TFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKN-L 166 (202)
T ss_pred eHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEE-E
Confidence 4666655 4777788899999999999999999998888755 5677777789999999985 57888998888874 7
Q ss_pred EEEEecCC
Q 043954 694 RIIYSGML 701 (1045)
Q Consensus 694 ~~~~~G~~ 701 (1045)
++...++.
T Consensus 167 ~~~~~~~~ 174 (202)
T cd03243 167 HMEELITT 174 (202)
T ss_pred EEEEEecC
Confidence 88887764
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=1.3e-15 Score=160.15 Aligned_cols=142 Identities=13% Similarity=0.202 Sum_probs=100.7
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
+..+.+|+++++++|++++|+||||+||||++|++++..- ..+...++| .....+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~vp---a~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFVP---AEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCcc---hhhcCccCh
Confidence 3468999999999999999999999999999999987421 111122332 233455666
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
|+|.. .++..+..+... +.+|+|++|+ ..+.+++.+|+++++|||++|+|
T Consensus 73 d~I~~------------------------~~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLS------------------------RLSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeE------------------------ecCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 66532 112222122222 3689999965 56667889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHcCCEEEEEecCCcHHHHHhc
Q 043954 648 ARAAAIV-MRAVKNVVRTGRTTVCTIHQPSIDVFEAF 683 (1045)
Q Consensus 648 ~~~~~~i-~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 683 (1045)
+.....+ .+.++.+.+.|.++|++||+.. +.+.+
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~--l~~~~ 157 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD--IAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH--HHHHh
Confidence 9876665 4567788778999999999854 44444
No 419
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.6e-14 Score=159.49 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhc--
Q 043954 615 GLSTEQRKRLTIAVELV---------SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAF-- 683 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~-- 683 (1045)
-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++ + .+++++|+.. ++...+
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~-~~~~~~~~ 257 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLA-DFDALWLR 257 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCch-hccchhcc
Confidence 48999999999999985 799999999999999999999999999765 3 3555555543 355555
Q ss_pred -ceEEEEecCcEE
Q 043954 684 -DELLLMKAGGRI 695 (1045)
Q Consensus 684 -d~v~~l~~gG~~ 695 (1045)
++++.++ +|++
T Consensus 258 ~~~i~~l~-~g~i 269 (270)
T cd03242 258 RAQIFRVD-AGTL 269 (270)
T ss_pred CccEEEEe-CcEE
Confidence 6788886 4764
No 420
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=159.24 Aligned_cols=177 Identities=24% Similarity=0.388 Sum_probs=132.7
Q ss_pred ccccccccceecCc-----eEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCC
Q 043954 489 LQLLHDITGAFRPG-----ILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQ 563 (1045)
Q Consensus 489 ~~iL~~vs~~i~~G-----e~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~ 563 (1045)
+..+-+..+.|+.| |++..+|.||.|||||+++++|+.+++ ..|+|-.- .++|=||.-.--..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd-~~~e~p~l-----------nVSykpqkispK~~ 416 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD-EGGEIPVL-----------NVSYKPQKISPKRE 416 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC-ccCccccc-----------ceeccccccCcccc
Confidence 34566777777776 578999999999999999999987742 22333221 24566665443445
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 043954 564 ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPT 643 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPt 643 (1045)
.||++.+.-- .| +.-.....+.++++-|.+++..|.-+ .+|||||.||+++|..|-..+++.+.|||.
T Consensus 417 ~tvR~ll~~k--Ir-----~ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTK--IR-----DAYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHH--hH-----hhhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 6888876531 11 01112345778888888888888877 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 644 SGLDARAAAIVMRAVKNVV-RTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 644 sgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+-||++.+...-+.+++.. +.++|-.++.|+.-.+. -++||+++.+
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEEe
Confidence 9999999999888888864 45789999999864322 3578888885
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.45 E-value=2.9e-13 Score=144.08 Aligned_cols=153 Identities=16% Similarity=0.066 Sum_probs=98.8
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
+.+.+|++++.++ ++++|+||||+|||||||.+++..-- |. .|..... .+..++++.| +++.+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA--SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc--ccceecceee---EeccCCchh
Confidence 3578999999887 99999999999999999999874311 11 1111111 1223455543 345556655
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH--HHHHHHHHHHHHhhCCCeEEEeCC---C
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST--EQRKRLTIAVELVSNPSIIFMDEP---T 643 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg--GqrqRv~ia~aL~~~p~illLDEP---t 643 (1045)
++..+ .|. .|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 54321 121 222333333334579999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 644 SGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 644 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
+++|.... ....++.+.+. +.++|++||+. ++.+.+|++.-+. .|++...+..
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~-~~~~~~~~~~ 176 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVK-NFHVAVKEKG 176 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeE-EEEEEEEeeC
Confidence 88887552 23445555555 88999999985 5778888876665 4777766554
No 422
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.43 E-value=5.2e-13 Score=145.71 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=89.5
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc----ccccccceEeecCCccCCCCCHHHHHHHHhhhcC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ----KTFARISGYCEQTDIHSPQITVEESVKFSAWLRL 578 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~ 578 (1045)
.-++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ....+..++++|.+. ...++|.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch-------
Confidence 6789999999999999999999987 468999999988642 223344567777543 23444444310
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 043954 579 PPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV 658 (1045)
Q Consensus 579 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l 658 (1045)
+. .|. . ...+..+|+++++|||++ .+.+...+
T Consensus 182 -----k~--------------------------------~~~---~--~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----KA--------------------------------EGM---M--MLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----HH--------------------------------HHH---H--HHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 011 1 222236999999999974 33455555
Q ss_pred HHHHHcCCEEEEEecCCcHHHH------------HhcceEEEEecCcE
Q 043954 659 KNVVRTGRTTVCTIHQPSIDVF------------EAFDELLLMKAGGR 694 (1045)
Q Consensus 659 ~~l~~~g~tvi~~~H~~~~~~~------------~~~d~v~~l~~gG~ 694 (1045)
+.+ ++|.++|+++|+++.+-. ..|||+++|++ |+
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~-~~ 259 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSR-RK 259 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEec-CC
Confidence 554 469999999998653222 56899999985 44
No 423
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.39 E-value=2.7e-13 Score=141.11 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCEEEEEecCCcHHHHHhcce
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVM-RAVKNVVRT-GRTTVCTIHQPSIDVFEAFDE 685 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 685 (1045)
+.+|+|++|...+.+ .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhc
Confidence 358887776333332 23499999999999999999877764 566777764 88999999986 46777765
No 424
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.36 E-value=5.2e-11 Score=129.14 Aligned_cols=198 Identities=16% Similarity=0.153 Sum_probs=146.4
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccc-cCCc--cchhh--HHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 043954 151 RELLLMKRNSFVYVFKTAQLAITAIITMTVFIRT-QMKL--DLMHA--NFMMGSLYYAIVRLMTNGVAELSLTITRLPVV 225 (1045)
Q Consensus 151 R~~~~~~Rd~~~~~~r~~~~i~~~li~G~if~~~-~~~~--~~~~~--~~~~g~lF~~~~~~~~~~~~~i~~~~~er~vf 225 (1045)
|+++...|||.....-+++-+++.++.|.+|-.. +.+. ++.+. ....|++.+.+...+... ......+++.=+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~--~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS--GISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHhCH
Confidence 7888999999999999999999999999987432 1111 11111 112344443333322211 111111111122
Q ss_pred hhhhcCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH
Q 043954 226 YRQRSFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTFQTMVI 305 (1045)
Q Consensus 226 ~rE~~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~~~~~~ 305 (1045)
.|+....=.++.+|++||.+..++..++..+++.++.|++.+++. ..++..++..++..++..++|.++++.++|.+.
T Consensus 79 ~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~ 156 (236)
T TIGR01247 79 LKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEG 156 (236)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 222223334578999999999999999999999999999888664 345656666777788889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhh
Q 043954 306 ATTVGSLALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISL 352 (1045)
Q Consensus 306 A~~i~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~ 352 (1045)
++.+.+++..+++.+||.+.|.+.+|.|++|+.+++|.+|+.|++-.
T Consensus 157 ~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~ 203 (236)
T TIGR01247 157 FQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARY 203 (236)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999664
No 425
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.33 E-value=4.5e-12 Score=135.95 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 615 GLSTEQRKRLTIAVELV----SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.||||||.+++||.-|+ .+.++++||||.++||...+..+.+.|+++.+ +.-+|++||++ .+++.+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc--ccccccccccccc
Confidence 49999999999997653 57789999999999999999999999999854 57899999985 5789999887765
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.30 E-value=1.6e-12 Score=120.42 Aligned_cols=74 Identities=20% Similarity=0.191 Sum_probs=61.0
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 565 (1045)
+.+|+++++++++||.++|+||||||||||++++. +|++.++|.+... ...++..++++|+ ....|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhh
Confidence 45899999999999999999999999999999985 5889999988643 3345567787776 44569
Q ss_pred HHHHHHHH
Q 043954 566 VEESVKFS 573 (1045)
Q Consensus 566 v~e~l~~~ 573 (1045)
++|||.+.
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
No 427
>PRK00064 recF recombination protein F; Reviewed
Probab=99.30 E-value=3.9e-11 Score=137.72 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhc-
Q 043954 614 SGLSTEQRKRLTIAVELV---------SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAF- 683 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~- 683 (1045)
..+|+||+|+++||+.|+ .+|+|++||||+++||+..+..+.+.+.++ +..+++++|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 359999999999999885 799999999999999999999999988754 458899999864 333443
Q ss_pred -ceEEEEecCcEE
Q 043954 684 -DELLLMKAGGRI 695 (1045)
Q Consensus 684 -d~v~~l~~gG~~ 695 (1045)
+++..++ +|++
T Consensus 348 ~~~i~~v~-~G~i 359 (361)
T PRK00064 348 NAKIFHVE-QGKI 359 (361)
T ss_pred cCcEEEEe-CCEE
Confidence 4688887 4765
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.29 E-value=3.8e-12 Score=157.92 Aligned_cols=130 Identities=17% Similarity=0.199 Sum_probs=90.5
Q ss_pred ccceecCc-eEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCc-cCCCCCHHHHHHH
Q 043954 495 ITGAFRPG-ILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDI-HSPQITVEESVKF 572 (1045)
Q Consensus 495 vs~~i~~G-e~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~-~~~~lTv~e~l~~ 572 (1045)
+|+.+.+| +.++|.||||+|||||||+++|..-- +..| .+||.... .+ .+.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G------------------~~Vpa~~~~~~---~~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG------------------IPIPANEHSEI---PYFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC------------------CCccCCccccc---cchhhee-
Confidence 68888877 99999999999999999999985210 1111 13333221 11 1111110
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 652 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~ 652 (1045)
. .+..+ +.+.+ +.+.+|+|++++..|++++ .+|+++++|||++|+|+....
T Consensus 371 -~------~i~~~------~si~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 -A------DIGDE------QSIEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred -e------ecChH------hHHhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 01110 01111 0136999999999998877 899999999999999999999
Q ss_pred HH-HHHHHHHHHcCCEEEEEecCCc
Q 043954 653 IV-MRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 653 ~i-~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.+ ...++.+.+.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 98 5788888888999999999865
No 429
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.29 E-value=6.8e-12 Score=137.79 Aligned_cols=166 Identities=25% Similarity=0.374 Sum_probs=117.1
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEe----------------------ec
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYC----------------------EQ 556 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v----------------------~q 556 (1045)
-+||++.+++|.||-||||-+++++|..++. -|. .+. ...+...++|. ||
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpn--lg~-----~~~-pp~w~~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGR-----YDN-PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCC--CCC-----CCC-CcchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 3689999999999999999999999987642 121 110 00111111110 11
Q ss_pred CCccCC---CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 043954 557 TDIHSP---QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSN 633 (1045)
Q Consensus 557 ~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~ 633 (1045)
.-..+| ..+|.+++. ....+...+++++.+.|.+..++-+. .|||||-||.+||.+-+.+
T Consensus 169 yvd~ipr~~k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~ 231 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQK 231 (592)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhh
Confidence 100011 113333322 11122345677888888888887774 6999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 634 PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 634 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.++.++|||.+-||...+..-...++.+...++=+|++.||++. +--+.|-+..|-
T Consensus 232 advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 232 ADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred cceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEe
Confidence 99999999999999999999999999998889999999999872 233457777775
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=1.2e-11 Score=131.31 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHHc---CCEEEEEecCCc
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIV-MRAVKNVVRT---GRTTVCTIHQPS 676 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i-~~~l~~l~~~---g~tvi~~~H~~~ 676 (1045)
.-|.||++++++++.+|+++++|||++|+|+.....+ ...++++.++ +.++|++||++.
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 4577999999999999999999999999999765444 5688888764 248999999864
No 431
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.28 E-value=2e-10 Score=124.63 Aligned_cols=204 Identities=12% Similarity=0.080 Sum_probs=146.6
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCC--CCchhhH-HHHHHHHHHHHHHHHHHhhhhhhhhHHHhHHH
Q 043954 797 KQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQK-GKE--INKEEDL-IVILGSMYIAVIFLGVNYCSTVLPYVATERTV 872 (1045)
Q Consensus 797 R~~~~~~R~~~~~~~r~~~~~~~~li~G~~f~~~-~~~--~~~~~~~-~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 872 (1045)
|+++..+|||.....-+.+-++..+++|.++-+. +++ ....+-. +-..|.+.+.++..+.... .......|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~--~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSG--ISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhCH
Confidence 6677889999988888999999999999987543 111 1111111 2223544444444333221 11112233344
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 043954 873 LYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVSVCPGVE 952 (1045)
Q Consensus 873 ~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1045)
+.|=.. .=-++..|++||.+.+++..++..+++..+.+++.+.+. ..++..++..++...+..++|.++++..++.+
T Consensus 79 ~~~~~~-~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEILV-APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 444333 334788999999999999999999999988888777554 34444555555666677899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCC
Q 043954 953 IASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGD 1005 (1045)
Q Consensus 953 ~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~ 1005 (1045)
.++.+.+.+..++..+||.+.|.+.+|+|++|+.+++|++|+.|++-....++
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~ 208 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGV 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999966544443
No 432
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.20 E-value=2.6e-11 Score=129.49 Aligned_cols=45 Identities=18% Similarity=0.359 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDEPT-----SGLDARAAAIVMRAVKNVVR 663 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDEPt-----sgLD~~~~~~i~~~l~~l~~ 663 (1045)
-|++++.|||+++.+|+++++|||| +|||+.+++.+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999864
No 433
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.19 E-value=9.2e-12 Score=134.49 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=68.5
Q ss_pred ccccccccCCCCCCCCHHH--------HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCEEEEEe
Q 043954 602 DIKDSLVGIPGQSGLSTEQ--------RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAI-VMRAVKNVVRTGRTTVCTI 672 (1045)
Q Consensus 602 ~~~~~~vg~~~~~~LSgGq--------rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~-i~~~l~~l~~~g~tvi~~~ 672 (1045)
...++.++..|. .+|||| +||+++||++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+
T Consensus 117 ~a~~ev~~~~G~-~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls 191 (249)
T cd01128 117 RAYNTVVPPSGK-ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLD 191 (249)
T ss_pred hhhhhccccCCC-CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEc
Confidence 345566666664 689999 9999999999999999999 999999755544 54 555554688999999
Q ss_pred cCCcHHHHHhcceEEEEecCcEE
Q 043954 673 HQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 673 H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
|+.. ....+|.|.+|++ |+.
T Consensus 192 ~~la--~~~~~paI~vl~s-~sr 211 (249)
T cd01128 192 RRLA--ERRIFPAIDILKS-GTR 211 (249)
T ss_pred hHHh--hCCCCCeEEEcCC-CCc
Confidence 9965 5778999999985 554
No 434
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.16 E-value=1.1e-10 Score=124.09 Aligned_cols=133 Identities=13% Similarity=0.176 Sum_probs=85.8
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCC-CCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR-KTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~-~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
..+.+|+++.+++|++++|+||||+||||+++++++. .. +..|...... . -.+++..|- +..+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l--a~~G~~v~a~-~-------~~~~~~~~i---~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM--AQIGSFVPAS-S-------ATLSIFDSV---LTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH--HhCCCEEEcC-c-------eEEeccceE---EEEecCc
Confidence 4589999999999999999999999999999999983 22 2344432211 0 012222221 0000000
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--HHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS--TEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS--gGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
|++. .++| ..|-+|++-...-+.+|+++++|||.+|
T Consensus 85 d~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~g 122 (222)
T cd03287 85 DSIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRG 122 (222)
T ss_pred cccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCC
Confidence 1100 0111 2344455444455678999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHHc-CCEEEEEecCCc
Q 043954 646 LDARAAAIV-MRAVKNVVRT-GRTTVCTIHQPS 676 (1045)
Q Consensus 646 LD~~~~~~i-~~~l~~l~~~-g~tvi~~~H~~~ 676 (1045)
.|+.....+ ...++.+.+. +.++|++||++.
T Consensus 123 T~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 123 TSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred CChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 987777765 5677777776 889999999975
No 435
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.14 E-value=8.3e-09 Score=113.03 Aligned_cols=197 Identities=14% Similarity=0.022 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHhhccccCCc-cchhh--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043954 145 FQACMSRELLLMKRN-SFVYVFKTAQLAITAIITMTVFIRTQMKL-DLMHA--NFMMGSLYYAIVRLMTNGVAELSLTIT 220 (1045)
Q Consensus 145 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~~li~G~if~~~~~~~-~~~~~--~~~~g~lF~~~~~~~~~~~~~i~~~~~ 220 (1045)
...+.+|+++..+|+ |......+++-++.-+++|.+|=. ..+. ++.+. ...-|.+-+++++.++. ...
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~-~~~~~~g~~y~~f~~pg~l~~~~~~~~~~--~~~----- 78 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGK-MVGSVDGVSYAAFLAAGMVATSAMTASTF--ETI----- 78 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-hccccCCCCHHHHHHHHHHHHHHHHHHHH--HHH-----
Confidence 345679999999999 999999999999999999988732 1111 11111 11113333333222211 101
Q ss_pred cchhhhhhhcCcc--------cchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHH
Q 043954 221 RLPVVYRQRSFLL--------YSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSM 292 (1045)
Q Consensus 221 er~vf~rE~~~g~--------Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~ 292 (1045)
-.++.|||.+|. -++..+.+||.+.+.-..++..++...+.+++ |..+. ...+..+..+++..++..++
T Consensus 79 -~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~l 155 (253)
T TIGR01291 79 -YATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASL 155 (253)
T ss_pred -HHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHH
Confidence 134445554444 26789999999999877777776665555443 44443 34555556667788888899
Q ss_pred HHHHHHccCchHHHHHHHHHHHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhh
Q 043954 293 CRLFASTFQTMVIATTVGSLALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISL 352 (1045)
Q Consensus 293 ~~~i~a~~~~~~~A~~i~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~ 352 (1045)
|.+++++.++.+.+..+.+++..|++..||.+.|.+.+|.|++|+.+++|+.|+.|++-.
T Consensus 156 g~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~ 215 (253)
T TIGR01291 156 SMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRP 215 (253)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999654
No 436
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.14 E-value=4.3e-09 Score=115.40 Aligned_cols=210 Identities=13% Similarity=0.147 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCC---C-Cc--hhhHHHHHHHHHHHHHHHHHHhhh
Q 043954 788 MEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQK-GKE---I-NK--EEDLIVILGSMYIAVIFLGVNYCS 860 (1045)
Q Consensus 788 ~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~li~G~~f~~~-~~~---~-~~--~~~~~~~~g~lf~~~~~~~~~~~~ 860 (1045)
+++++.+++|+++...|||.....-+++.++.-+++|.+|-.. +.+ . .+ .-..+-..|.+-+.+++.++....
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999998542 110 0 00 011123345544444443333221
Q ss_pred hhhhhHHHhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Q 043954 861 TVLPYVATERTVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYL 940 (1045)
Q Consensus 861 ~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~ 940 (1045)
. .....|+....|=+.... +...+.+++++...-..+++.++..++.+. .|.+.+....+......++..++..++
T Consensus 81 ~--~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 81 S--MVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred H--hHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 111233335455455554 788899999999988887776665555442 366555444444444455566677889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCc---cchhhhhhccCHHHHHHHHHHHH
Q 043954 941 GMFLVSVCPGVEIASVLATAIYTILNLFSGFLLPGPKI---PKWWIWCYWICPTSWSLNGLLTS 1001 (1045)
Q Consensus 941 ~~~~~~~~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~i---p~~~~W~~~isp~~y~~~~l~~~ 1001 (1045)
|.++++++++.+.+..+.++++.+++..||.+.|.+.+ |+|++|+.++||+.|..|++-..
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~ 220 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA 220 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999998888888888899999999999998665 88999999999999999987543
No 437
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.13 E-value=9.2e-10 Score=130.45 Aligned_cols=146 Identities=21% Similarity=0.380 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH------HHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 043954 562 PQITVEESVKFSAWLRLPPEIDSETKARFVEEV------IETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSNP 634 (1045)
Q Consensus 562 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p 634 (1045)
..+++.|.+.|...+.+.. ......+..+.++ |..+||.-. .++.. ..|||||.||+-||..+-.+=
T Consensus 427 ~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a-----~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSA-----GTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccccC-----CCcChhHHHHHHHHHHhcccc
Confidence 3568888888876655321 1111112223333 233466432 23332 379999999999999997654
Q ss_pred C--eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCCcc---
Q 043954 635 S--IIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLGRH--- 704 (1045)
Q Consensus 635 ~--illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~~--- 704 (1045)
- +++||||+.||-+..-.++++.|++|++.|.|+|++.||+ ++...+|+++-+- +||++++.|++++.
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 3 6799999999999999999999999999999999999995 5899999999983 47999999998641
Q ss_pred h-hHHHHHHhcC
Q 043954 705 S-SKLIEYFQGI 715 (1045)
Q Consensus 705 ~-~~~~~~f~~~ 715 (1045)
. +-.-+|+..-
T Consensus 579 ~~SlTG~YLsg~ 590 (935)
T COG0178 579 PESLTGQYLSGK 590 (935)
T ss_pred CcchhhHhhcCC
Confidence 1 2334666554
No 438
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.13 E-value=1e-10 Score=142.30 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 615 GLSTEQRKRLTIAVELVSN----PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~----p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||++. +...+|+++++.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEEE
Confidence 5999999999999999985 699999999999999999999999999875 899999999975 567899999997
Q ss_pred c
Q 043954 691 A 691 (1045)
Q Consensus 691 ~ 691 (1045)
+
T Consensus 517 k 517 (563)
T TIGR00634 517 K 517 (563)
T ss_pred E
Confidence 5
No 439
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.12 E-value=1.6e-09 Score=115.22 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=102.5
Q ss_pred cchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 043954 234 YSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTFQTMVIATTVGSLA 313 (1045)
Q Consensus 234 Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~~~~~~A~~i~~~~ 313 (1045)
-+.+.+++||.+..++..++..+++..+.|++.|++++ +++.+++.+++..++..+++.++++++++...+ ++.++
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHH
Confidence 34567799999999999999999999999999999974 678888999999999999999999999976544 44455
Q ss_pred HHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhhhcc
Q 043954 314 LVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISLNEF 355 (1045)
Q Consensus 314 ~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~nef 355 (1045)
+.+.++++|.+.|.+.+|.|++|+.|++|.+|+.+++-...+
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~ 174 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLIS 174 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHh
Confidence 667777899889999999999999999999999999976553
No 440
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.11 E-value=7.3e-11 Score=144.69 Aligned_cols=77 Identities=19% Similarity=0.365 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHHh----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHh
Q 043954 614 SGLSTEQRKRLTIAVELV----------SNPSIIFMDEPT-SGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEA 682 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~----------~~p~illLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~ 682 (1045)
..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ +|.++|++||++. ....
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~~ 542 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQK 542 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chhh
Confidence 479999999999999887 599999999998 789999999999999998 5899999999964 5678
Q ss_pred cceEEEEecCcE
Q 043954 683 FDELLLMKAGGR 694 (1045)
Q Consensus 683 ~d~v~~l~~gG~ 694 (1045)
+|++++|.+.|+
T Consensus 543 ~d~~~~l~~~~~ 554 (562)
T PHA02562 543 FDRHLKMEKVGR 554 (562)
T ss_pred hhcEEEEEEECC
Confidence 999999986444
No 441
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.11 E-value=7.5e-09 Score=113.37 Aligned_cols=210 Identities=11% Similarity=0.108 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhH-HHHHHHHHHHHHHHHHHhhhhhhhhHH-
Q 043954 791 YLACLWKQHLSYWRS-PEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDL-IVILGSMYIAVIFLGVNYCSTVLPYVA- 867 (1045)
Q Consensus 791 ~~~l~~R~~~~~~R~-~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~-~~~~g~lf~~~~~~~~~~~~~~~~~~~- 867 (1045)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+..-. +-..|.+-+++++.++..... ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~--~~~~~ 84 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIY--ATFAR 84 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 455679999999999 99999999999998888998875431111111111 111244433333333211111 1111
Q ss_pred -HhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043954 868 -TERTVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVS 946 (1045)
Q Consensus 868 -~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 946 (1045)
.|+..++|-+..-. ++..+.+||++.+.-..++..++...+.++ .|..+. ...+..+...++..++..++|.++++
T Consensus 85 ~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~ 161 (253)
T TIGR01291 85 MRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAA 161 (253)
T ss_pred HHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444444 789999999999977777776665555443 444333 33344444455566777789999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCC
Q 043954 947 VCPGVEIASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGD 1005 (1045)
Q Consensus 947 ~~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~ 1005 (1045)
++++.+.+..+..++..+++.+||.+.|.+.+|+|++++.++||++|+.|++-...+++
T Consensus 162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~ 220 (253)
T TIGR01291 162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG 220 (253)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999965554443
No 442
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.11 E-value=5.3e-09 Score=114.72 Aligned_cols=206 Identities=11% Similarity=0.126 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccc-cC----Cccc-h--hhHHHHHHHHHHHHHHHHHHHHH
Q 043954 143 ELFQACMSRELLLMKRNSFVYVFKTAQLAITAIITMTVFIRT-QM----KLDL-M--HANFMMGSLYYAIVRLMTNGVAE 214 (1045)
Q Consensus 143 ~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~if~~~-~~----~~~~-~--~~~~~~g~lF~~~~~~~~~~~~~ 214 (1045)
.+++.+++|+++...|||..+...+++-+++-++.|.+|-.. +. +.++ . -....-|++-+.+.+.++++ .
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~--~ 79 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS--S 79 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--h
Confidence 578899999999999999999999999999999999998421 11 0011 0 11222344333333322211 1
Q ss_pred HHHhh-ccchhhhhhhcCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 043954 215 LSLTI-TRLPVVYRQRSFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMC 293 (1045)
Q Consensus 215 i~~~~-~er~vf~rE~~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~ 293 (1045)
+.... .++....+=+... .+...+.++|.++..-..++..++..++.+. .|.+.....++.....+++..+...++|
T Consensus 80 ~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lg 157 (253)
T TIGR03861 80 LSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALG 157 (253)
T ss_pred hHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 11111 1122222222222 4677899999999988777776665555543 3777665555555566677778888999
Q ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhhcceeCCCCC---CccchhhhhhChhHHHHHHHhh
Q 043954 294 RLFASTFQTMVIATTVGSLALVLMFLFGGFILPRSSL---PPWLSWGFWISLMTYGEIGISL 352 (1045)
Q Consensus 294 ~~i~a~~~~~~~A~~i~~~~~~~~~lf~Gf~i~~~~i---P~~~~W~~yis~~~Yafeal~~ 352 (1045)
.++++++++.+.++.+.+.++.+++..+|.+.|.+.+ |.|++|+.++||++|..|++-.
T Consensus 158 l~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 158 LALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999999999999999999999998666 8899999999999999988853
No 443
>PRK10869 recombination and repair protein; Provisional
Probab=99.11 E-value=1.7e-10 Score=139.01 Aligned_cols=74 Identities=18% Similarity=0.366 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 615 GLSTEQRKRLTIAVELVS----NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +...+|+.+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 589999999999999997 5899999999999999999999999999965 799999999985 568999999997
Q ss_pred c
Q 043954 691 A 691 (1045)
Q Consensus 691 ~ 691 (1045)
+
T Consensus 507 k 507 (553)
T PRK10869 507 K 507 (553)
T ss_pred c
Confidence 5
No 444
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.10 E-value=1e-08 Score=110.92 Aligned_cols=190 Identities=12% Similarity=0.119 Sum_probs=126.0
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhhhhcCcccc
Q 043954 157 KRNSFVYVFKTAQLAITAIITMTVFIRTQMKLDLMHANFMMGSLYYAIVRLMTNGVAELSLTIT-RLPVVYRQRSFLLYS 235 (1045)
Q Consensus 157 ~Rd~~~~~~r~~~~i~~~li~G~if~~~~~~~~~~~~~~~~g~lF~~~~~~~~~~~~~i~~~~~-er~vf~rE~~~g~Y~ 235 (1045)
+|||.....-+.+-+++-++.+.+|=+ +.+.+..+ +...|.+-+.....+....+ .....+ |+..+.|-+..- .+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGG-SVTHNRGA-TFIPVLMALAAISTAFTGQA-IAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCC-ccCCcchh-HhhHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHhcCC-Cc
Confidence 699999999999998887777776632 11111111 11222222222221111111 111111 224444444332 37
Q ss_pred hhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHccC---chHHHHHHHHH
Q 043954 236 AWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFASTFQ---TMVIATTVGSL 312 (1045)
Q Consensus 236 ~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~a~~~---~~~~A~~i~~~ 312 (1045)
+.+|++||.+..++..++..+++. +++++.|++..... +..++...+....+.+++.+++++++ +.+.+..++++
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888777655554 56778899876543 34445555666667777777887774 45555889999
Q ss_pred HHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhh
Q 043954 313 ALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISL 352 (1045)
Q Consensus 313 ~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~ 352 (1045)
+.++++++||.+.|.+.+|.|++|+.+++|++|+.+++-.
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~ 195 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQ 195 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 445
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.10 E-value=9.8e-11 Score=145.93 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCcHHHHHh-cceEEEEec
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMR-AVKNVVRTGRTTVCTIHQPSIDVFEA-FDELLLMKA 691 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~ 691 (1045)
+.+|+|++|++.|++++ .+|+++++|||++|+|+.....+.. .++.+.+.|.++|++||++. +... +|+..+..
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e--l~~~~~~~~~v~~- 464 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE--LKALMYNREGVEN- 464 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH--HHHHHhcCCCeEE-
Confidence 46999999999999998 8999999999999999999888854 67777777999999999964 4433 45444442
Q ss_pred CcEEEEe
Q 043954 692 GGRIIYS 698 (1045)
Q Consensus 692 gG~~~~~ 698 (1045)
+.+.++
T Consensus 465 -~~~~~d 470 (782)
T PRK00409 465 -ASVEFD 470 (782)
T ss_pred -EEEEEe
Confidence 455553
No 446
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.09 E-value=6.9e-10 Score=119.38 Aligned_cols=151 Identities=20% Similarity=0.203 Sum_probs=89.8
Q ss_pred ceecCceEEEEecCCCCCHHHH-HHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhh
Q 043954 497 GAFRPGILTALMGVSGAGKTTL-MDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAW 575 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTL-l~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 575 (1045)
+-+++|++++|.|+|||||||| ++.+.+..+.+ + .+.|+.. ..|..+.+.....
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~-----------------~~~yi~~------e~~~~~~~~~~~~ 73 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG--Y-----------------SVSYVST------QLTTTEFIKQMMS 73 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC--C-----------------cEEEEeC------CCCHHHHHHHHHH
Confidence 3589999999999999999999 68888754321 1 1234332 2244455544322
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCC----C
Q 043954 576 LRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELV----SNPSIIFMDEPTSGL----D 647 (1045)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~----~~p~illLDEPtsgL----D 647 (1045)
+.. + +++.... +.-...+.. ..+|+++.++-.+.+.+- .+|+++++||||+++ |
T Consensus 74 ~g~----~-------~~~~~~~-~~l~~~~~~------~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d 135 (230)
T PRK08533 74 LGY----D-------INKKLIS-GKLLYIPVY------PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS 135 (230)
T ss_pred hCC----c-------hHHHhhc-CcEEEEEec------ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc
Confidence 221 0 1111110 100001110 136677665555544433 369999999999999 8
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCcHH------HHHhcceEEEEe
Q 043954 648 ARAAAIVMRAVKNVVRTGRTTVCTIHQPSID------VFEAFDELLLMK 690 (1045)
Q Consensus 648 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~------~~~~~d~v~~l~ 690 (1045)
+...+++.+.+++++++|.|+++++|+.... +...+|-++.|.
T Consensus 136 ~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 136 EVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8888899999999988888777765543210 122356666664
No 447
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.08 E-value=9.9e-10 Score=127.64 Aligned_cols=171 Identities=16% Similarity=0.233 Sum_probs=109.6
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-----------ccccccceEeecC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-----------KTFARISGYCEQT 557 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-----------~~~~~~~~~v~q~ 557 (1045)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+ +..|.|.+.|+.... ..+++.+.++.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~--~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS--ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 5689999 9999999999999999999999999999877 467999997654311 1234556777653
Q ss_pred CccCCCCCHHHHHH--HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC-HHHHHH-HHHHHHHhhC
Q 043954 558 DIHSPQITVEESVK--FSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS-TEQRKR-LTIAVELVSN 633 (1045)
Q Consensus 558 ~~~~~~lTv~e~l~--~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS-gGqrqR-v~ia~aL~~~ 633 (1045)
+. ++.+-.. +.+ .. +.|....-| .|..+=-. .++ --|-+| +++ ++.+
T Consensus 223 ~~-----~~~~r~~~~~~a-------------~~-iAEyfr~~g----~~Vll~~D---sltr~A~A~rEisl---~~ge 273 (438)
T PRK07721 223 DQ-----PALMRIKGAYTA-------------TA-IAEYFRDQG----LNVMLMMD---SVTRVAMAQREIGL---AVGE 273 (438)
T ss_pred CC-----CHHHHHHHHHHH-------------HH-HHHHHHHCC----CcEEEEEe---ChHHHHHHHHHHHH---hcCC
Confidence 32 1111111 100 01 112222112 12211100 111 011111 111 1123
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 634 PSIIFMDEPTSGLDARAAAIVMRAVKNVVR--TGR-----TTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 634 p~illLDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|+ .|+|+|+.....+.++++++.+ +|. ||++.+|+.+ + ..||++..+. +|+++..+..
T Consensus 274 ~P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~-dG~Ivls~~l 338 (438)
T PRK07721 274 PP------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGIL-DGHFVLDRQL 338 (438)
T ss_pred CC------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEec-CEEEEEeccH
Confidence 33 3789999999999999999874 575 9999999987 2 7899999998 5999999975
No 448
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=3.8e-10 Score=147.12 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhc
Q 043954 614 SGLSTEQRKRLTIAVELVS----------NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAF 683 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 683 (1045)
+.|||||++|++||+||+. +|++||+||||+|||+.+...+++.|+++.+.|++|+++||++. .....+
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~~~ 1027 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRERIP 1027 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHhhC
Confidence 5799999999999999986 79999999999999999999999999999888999999999976 466788
Q ss_pred ceEEEEec
Q 043954 684 DELLLMKA 691 (1045)
Q Consensus 684 d~v~~l~~ 691 (1045)
|+|.|++.
T Consensus 1028 ~~i~v~~~ 1035 (1042)
T TIGR00618 1028 HRILVKKT 1035 (1042)
T ss_pred CEEEEEEC
Confidence 99999964
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.03 E-value=3.2e-10 Score=120.28 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=86.3
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
..+-+|+++..++|++++|.||||+||||+++.+++..-- ...| ....... ..++++ +..+..+...|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G------~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMG------MDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcC------CccCccc--cEeccc---cEEEEecCccc
Confidence 4688999999999999999999999999999999874210 0001 1100000 001111 11111111111
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--HHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS--TEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS--gGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
++.. ++| ..|-+|++-....+.+|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 1110 111 13445554444556789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHHc-CCEEEEEecCCc
Q 043954 647 DARAAAIVMRA-VKNVVRT-GRTTVCTIHQPS 676 (1045)
Q Consensus 647 D~~~~~~i~~~-l~~l~~~-g~tvi~~~H~~~ 676 (1045)
|+.....+... ++.+.+. +.++|++||+..
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99999988887 7788776 899999999864
No 450
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.97 E-value=4e-08 Score=106.33 Aligned_cols=195 Identities=15% Similarity=0.100 Sum_probs=126.6
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhHHHHHHHhcCCCC
Q 043954 803 WRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLIVILGSMYIAVIFLGVNYCSTVLPYVATERTVLYREKFAGMY 882 (1045)
Q Consensus 803 ~R~~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y 882 (1045)
+|||.....-+.+.+++-++++.+|-+... .+.-+ +...|.+-+..++.+....... -....|+..+.|-+..-.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~-i~~er~~G~l~rl~~~P~- 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT--HNRGA-TFIPVLMALAAISTAFTGQAIA-VARDRRYGALKRLGATPL- 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccC--Ccchh-HhhHHHHHHHHHHHHHHHHHHH-HHHHHHhCHHHHHhcCCC-
Confidence 699999888888888887888887765211 11111 1133433322222222111111 111224446666666654
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 043954 883 SPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVSVC---PGVEIASVLAT 959 (1045)
Q Consensus 883 ~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~ 959 (1045)
++..|+++|.+..++..++...++. +++++.|++...... ..+....+....+..++.++++++ ++.+.+..++.
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 8999999999999888877766555 456677887654332 222333334444555666666665 44555577888
Q ss_pred HHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhC
Q 043954 960 AIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYG 1004 (1045)
Q Consensus 960 ~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~ 1004 (1045)
+...+++++||.+.|.+.+|.|++|+.+++|++|+.+++-..-.+
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~ 199 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV 199 (232)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC
Confidence 888999999999999999999999999999999999986544333
No 451
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.96 E-value=4.9e-09 Score=109.25 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=63.2
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEecCCcH-------
Q 043954 614 SGLSTEQRK------RLTIAVELVSNPSIIFMDEPTSGLD---ARAAAIVMRAVKNVVRTGRTTVCTIHQPSI------- 677 (1045)
Q Consensus 614 ~~LSgGqrq------Rv~ia~aL~~~p~illLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~------- 677 (1045)
..+|+||+| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 368999998 4444555667999999999999999 888888999999998889999999998652
Q ss_pred -HHHHhcceEEEEe
Q 043954 678 -DVFEAFDELLLMK 690 (1045)
Q Consensus 678 -~~~~~~d~v~~l~ 690 (1045)
.+...+|.++.|+
T Consensus 150 ~~~~~~aD~ii~l~ 163 (187)
T cd01124 150 GDVEYLVDGVIRLR 163 (187)
T ss_pred CceeEeeeEEEEEE
Confidence 1456789998886
No 452
>PRK13695 putative NTPase; Provisional
Probab=98.91 E-value=8e-10 Score=113.96 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEP--TSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEP--tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
.+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+. +
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~-~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRP-G 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccC-C
Confidence 5999999999999999999999999995 44444 345666666666799999999984 3567789999997 5
Q ss_pred cEEEEecC
Q 043954 693 GRIIYSGM 700 (1045)
Q Consensus 693 G~~~~~G~ 700 (1045)
|++.+-.+
T Consensus 151 ~~i~~~~~ 158 (174)
T PRK13695 151 GRVYELTP 158 (174)
T ss_pred cEEEEEcc
Confidence 88877644
No 453
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.90 E-value=1.4e-08 Score=107.79 Aligned_cols=119 Identities=23% Similarity=0.200 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043954 883 SPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLVSVCPGVEIASVLATAIY 962 (1045)
Q Consensus 883 ~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 962 (1045)
+.+.++++|.+..++..++++++...+.|++.|++.+ +++.+++..++..+++.++|.+++++.++...+ .+.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 5678899999999999999999999999999998864 466667777778888899999999999876543 344455
Q ss_pred HHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCC
Q 043954 963 TILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGD 1005 (1045)
Q Consensus 963 ~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~ 1005 (1045)
.+.++++|.+.|.+.+|+|++|+.+++|++|+.+++-...+++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~ 176 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG 176 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC
Confidence 5677789999999999999999999999999999998777765
No 454
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.90 E-value=1.1e-09 Score=119.52 Aligned_cols=62 Identities=24% Similarity=0.406 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 615 GLSTEQRKRLTIAVELVSNP---SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.+|.|+||.+.++..|...+ .++++|||-++|+|..+..+++.|++..+.+.-+|++||.|.
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 47999999999999988777 899999999999999999999999887666889999999874
No 455
>PRK03918 chromosome segregation protein; Provisional
Probab=98.89 E-value=3.4e-09 Score=137.03 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=67.6
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEE
Q 043954 614 SGLSTEQRK------RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 614 ~~LSgGqrq------Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
..||||||| |+++|++++.+|+++++||||+|||+..+..+.+.|+.+++.+.++|++||++ ++...||+++
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~~~ 864 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADYVI 864 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCeEE
Confidence 469999999 55566678899999999999999999999999999999877788999999996 4678999999
Q ss_pred EEec
Q 043954 688 LMKA 691 (1045)
Q Consensus 688 ~l~~ 691 (1045)
+|..
T Consensus 865 ~l~~ 868 (880)
T PRK03918 865 RVSL 868 (880)
T ss_pred EEEe
Confidence 9973
No 456
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=3.5e-09 Score=140.86 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=64.7
Q ss_pred cccccCCCCCCCCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEec
Q 043954 605 DSLVGIPGQSGLSTEQRK------RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-----TGRTTVCTIH 673 (1045)
Q Consensus 605 ~~~vg~~~~~~LSgGqrq------Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H 673 (1045)
|+.++..+ .||||||| |++|||+++.+|++|+|||||+|||+.+...+.+.|.++.. .|.++|++||
T Consensus 1191 ~~~~~~~~--~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALDMRG--RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecCCCC--CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 66666544 69999999 99999999999999999999999999999999999988742 3789999999
Q ss_pred CCcHHHHHhc
Q 043954 674 QPSIDVFEAF 683 (1045)
Q Consensus 674 ~~~~~~~~~~ 683 (1045)
++. .+..+|
T Consensus 1269 d~~-~~~~~~ 1277 (1311)
T TIGR00606 1269 DED-FVELLG 1277 (1311)
T ss_pred CHH-HHHHHh
Confidence 975 344443
No 457
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.85 E-value=2.8e-08 Score=98.94 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHh-cceEEEEecC
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEA-FDELLLMKAG 692 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 692 (1045)
...|-||-=---+.+. ..+.-+.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|- +... -..|+-++++
T Consensus 128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi--LlAiP~A~I~~~~~~ 204 (233)
T COG3910 128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI--LLAIPGAEIYEISES 204 (233)
T ss_pred hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh--heeCCCcEEEEEecC
Confidence 4578888754444444 3566899999999999999999999999999999999999999873 2222 1345555544
Q ss_pred c
Q 043954 693 G 693 (1045)
Q Consensus 693 G 693 (1045)
|
T Consensus 205 g 205 (233)
T COG3910 205 G 205 (233)
T ss_pred C
Confidence 4
No 458
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.85 E-value=7.7e-09 Score=104.64 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTS----------GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSI 677 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPts----------gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 677 (1045)
.+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45667778888999999999999999994 455555666666666665568999999998763
No 459
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.84 E-value=7.2e-09 Score=134.41 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHhh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhc-c
Q 043954 614 SGLSTEQRKRLTIAVELVS--------NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAF-D 684 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~--------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~-d 684 (1045)
.+|||||++|++||++|+. +|++||+||||++||+.+...+++.|+++.+.|+||+++||.. ++.+.. .
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~--~l~~~i~~ 1025 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE--AMKERIPV 1025 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH--HHHHhccc
Confidence 5799999999999999996 8999999999999999999999999999988899999999964 344433 3
Q ss_pred eEEEEe
Q 043954 685 ELLLMK 690 (1045)
Q Consensus 685 ~v~~l~ 690 (1045)
+|.|-.
T Consensus 1026 qi~V~k 1031 (1047)
T PRK10246 1026 QIKVKK 1031 (1047)
T ss_pred eEEEEE
Confidence 444443
No 460
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.82 E-value=1.2e-08 Score=114.88 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=90.5
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
=+++.+++|+.++|.||+|||||||+++|++..+ +..|.+.++...--....+..+.+..+..
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~~~~~~l~~~~~--------------- 198 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPHPNYVHLFYSKG--------------- 198 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCCCCEEEEEecCC---------------
Confidence 3678899999999999999999999999999876 34566666432100000001111111100
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAI 653 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~ 653 (1045)
+ .+....+-. -.++.+|-.+|+++++|||.+ .+
T Consensus 199 -----------------------------------~-~~~~~~~~~----~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 199 -----------------------------------G-QGLAKVTPK----DLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -----------------------------------C-CCcCccCHH----HHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 000011221 134556778999999999996 34
Q ss_pred HHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 654 VMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 654 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
..+.++.+...+.+++.++|..+ ..+..||+..|.. |++...|.+.
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~-~~~~~~g~~~ 277 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVK-SSQAGLGLDF 277 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhh-ccccccCCCH
Confidence 56677776543345799999987 5667899998874 7777777653
No 461
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.81 E-value=1.4e-08 Score=117.17 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=107.2
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+ +..|.|.+.|+.. .+|+|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGerg---------------------~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGERG---------------------REVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCCc---------------------ccHHH
Confidence 4578885 9999999999999999999999999999876 4567766655331 24555
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCeEEEeC
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELV-------SNPSIIFMDE 641 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~-------~~p~illLDE 641 (1045)
.+... +..-++... ..+ ....+-|.|+|+|++.+.+.+ .++-++++||
T Consensus 200 ~~~~~---------------------l~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 200 FIRKE---------------------LGEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHH---------------------hhhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 54321 110111110 111 112468999999999999888 7899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 642 PTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 642 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
||+..|+. ++|-..+.+....|.+..+.+|.+ .+.+.+.+ .. +|.+...+.
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~ERag~---~~-~GSiT~~~t 305 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLERSGK---TQ-KGSITGIYT 305 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHHHhcc---CC-CcceEEEEE
Confidence 99999996 556556666554588888888853 35555544 34 677665443
No 462
>PRK15066 inner membrane transport permease; Provisional
Probab=98.81 E-value=1.1e-06 Score=96.61 Aligned_cols=204 Identities=9% Similarity=0.059 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHhhccccCCc-cchhh--HHHHHHHHHHHHHHHHHHHHHHHH
Q 043954 142 WELFQACMSRELLLMKRNSFV-YVFKTAQLAITAIITMTVFIRTQMKL-DLMHA--NFMMGSLYYAIVRLMTNGVAELSL 217 (1045)
Q Consensus 142 ~~q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~~li~G~if~~~~~~~-~~~~~--~~~~g~lF~~~~~~~~~~~~~i~~ 217 (1045)
|.-++.+.+|+++...||+.. ...-+++.++..++.|.++ +.+.+. ++.+. ...-|++-+.....+. .....
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~-~~~~~~~~~~~y~~fl~pGll~~~~~~~~~---~~~~~ 82 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLI-GSRIGEMGGFSYMQFIVPGLIMMSVITNSY---SNVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-ccccCCCCCCcHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 567789999999999999854 3444456666677777665 211111 11111 1112333333222221 11111
Q ss_pred -hhccc--hhhhhhhcCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 043954 218 -TITRL--PVVYRQRSFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCR 294 (1045)
Q Consensus 218 -~~~er--~vf~rE~~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~ 294 (1045)
...++ .. .|+-..-=-+...+.+++.+...-..++..++..++.+...|.+.. ....++..+++........+.
T Consensus 83 ~i~~~~~~~~-~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 83 SFFSAKFQRN-IEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHhhh-HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 11221 11 1111111347778899999988777666666665665555577653 233334444444444445688
Q ss_pred HHHHccCchHHHHHHHHHHHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhh
Q 043954 295 LFASTFQTMVIATTVGSLALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISL 352 (1045)
Q Consensus 295 ~i~a~~~~~~~A~~i~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~ 352 (1045)
+++.+.++.+.+..+.+.+..|++..+|.+.|.+.+|.|++|+.++||+.|..|++=.
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~ 217 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRY 217 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998763
No 463
>PRK01156 chromosome segregation protein; Provisional
Probab=98.80 E-value=1.2e-08 Score=131.63 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHH------HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-c-C-CEEEEEecCCcHHHHHhc
Q 043954 613 QSGLSTEQRKRLTI------AVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-T-G-RTTVCTIHQPSIDVFEAF 683 (1045)
Q Consensus 613 ~~~LSgGqrqRv~i------a~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~-g-~tvi~~~H~~~~~~~~~~ 683 (1045)
...||||||+|++| |++++.+|++++|||||+|||+.....+.+.++...+ . | .++|++||++. ....|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHhc
Confidence 35799999999975 5899999999999999999999999999999986443 3 3 48999999974 56889
Q ss_pred ceEEEEec-CcE
Q 043954 684 DELLLMKA-GGR 694 (1045)
Q Consensus 684 d~v~~l~~-gG~ 694 (1045)
|+++.+.. ||.
T Consensus 877 d~ii~~~~~~~~ 888 (895)
T PRK01156 877 DVAYEVKKSSGS 888 (895)
T ss_pred CeEEEEEecCCe
Confidence 99999974 443
No 464
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.79 E-value=4.3e-08 Score=123.91 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=58.8
Q ss_pred HhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHH---------HhcceEEEEecCcEEEEec
Q 043954 630 LVSNPSIIFMDEPTSGL-DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVF---------EAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 630 L~~~p~illLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~---------~~~d~v~~l~~gG~~~~~G 699 (1045)
+..+|+++++|||+.+| |+..++.+.+.++++++.|.+++++||+++ ++. +.||++++|. +|+....|
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~-n~~a~~~~ 726 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLP-NGAAREPG 726 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECC-Cccccccc
Confidence 35799999999999999 799999999999999888999999999986 343 6799999997 47776555
Q ss_pred C
Q 043954 700 M 700 (1045)
Q Consensus 700 ~ 700 (1045)
.
T Consensus 727 ~ 727 (818)
T PRK13830 727 T 727 (818)
T ss_pred h
Confidence 3
No 465
>PRK15066 inner membrane transport permease; Provisional
Probab=98.78 E-value=7.8e-07 Score=97.79 Aligned_cols=211 Identities=12% Similarity=0.100 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcCCCCCCCchhh-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 043954 787 SMEQYLACLWKQHLSYWRSPEY-NMARFVFMIFAALLFGAVVWQKGKEINKEED-LIVILGSMYIAVIFLGVNYCSTVLP 864 (1045)
Q Consensus 787 ~~~q~~~l~~R~~~~~~R~~~~-~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~-~~~~~g~lf~~~~~~~~~~~~~~~~ 864 (1045)
.|+-++.+.+|+.+...||+.. ...-+++.++..+++|.++-....+..+..- .+-..|.+-+..+..+..... .
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~---~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVA---S 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4677889999999999999854 3444455556667777665321110011111 122235443333333332211 1
Q ss_pred hHHHhH--HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 043954 865 YVATER--TVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGM 942 (1045)
Q Consensus 865 ~~~~er--~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~ 942 (1045)
.+..+| ....|=.... -+...+.+++++...-..++..++..++.+...|.+.. .........++........|.
T Consensus 83 ~i~~~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 222232 1122222233 47888999999988777666665555555444465543 222222333333333444578
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHh
Q 043954 943 FLVSVCPGVEIASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQY 1003 (1045)
Q Consensus 943 ~~~~~~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef 1003 (1045)
+++.+.++.+.+..+.+++..+++..||.+.|.+++|+|++|+.++||++|..|++=..-+
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~ 220 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL 220 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc
Confidence 8888888888888888999999999999999999999999999999999999998654333
No 466
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.69 E-value=6.8e-08 Score=101.71 Aligned_cols=57 Identities=19% Similarity=0.385 Sum_probs=43.7
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 625 TIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 625 ~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+++++|..+|+++++|||. |.++...++ +.+..|+.++.++|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4788999999999999996 665443333 34567999999999986 457789987774
No 467
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.68 E-value=3.1e-07 Score=99.54 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=94.7
Q ss_pred cccccc-cceecCceEEEEecCCCCCHHHHHHHHhC-CCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 490 QLLHDI-TGAFRPGILTALMGVSGAGKTTLMDVLSG-RKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 490 ~iL~~v-s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G-~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
.-|+.+ .+-+++|+++.|.|++|+|||||...++- .... | +.+.|+..+. +..
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g---------------~~~~y~~~e~------~~~ 66 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ----G---------------KKVYVITTEN------TSK 66 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC----C---------------CEEEEEEcCC------CHH
Confidence 345554 56799999999999999999999988752 1111 1 1123333211 222
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh--CCCeEEEeCCCCC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS--NPSIIFMDEPTSG 645 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~--~p~illLDEPtsg 645 (1045)
+-+.-...+. .+- ++.+. -+.....+..... ....|.++++.+...+.++. +|+++++||||+.
T Consensus 67 ~~~~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~~--~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~ 132 (234)
T PRK06067 67 SYLKQMESVK----IDI-------SDFFL-WGYLRIFPLNTEG--FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIF 132 (234)
T ss_pred HHHHHHHHCC----CCh-------hHHHh-CCCceEEeccccc--cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHH
Confidence 2222111111 010 01110 0111111111110 12357788999999999997 9999999999964
Q ss_pred ---CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHH------HHHhcceEEEEe
Q 043954 646 ---LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSID------VFEAFDELLLMK 690 (1045)
Q Consensus 646 ---LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~------~~~~~d~v~~l~ 690 (1045)
+|......+++.++.++++|.|+++++|+.... +...+|-++.|.
T Consensus 133 ~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 133 ATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 455555566666777777899999999986521 344567666664
No 468
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.63 E-value=1.8e-08 Score=115.59 Aligned_cols=51 Identities=20% Similarity=0.349 Sum_probs=44.4
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEEECCeeCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQG-EIRVGGYPKV 543 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G-~I~~~g~~~~ 543 (1045)
.++|++||+++++||+++|+|||||||||||+ +|+.. +.+| +|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~--~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK--FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC--CCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 56555 3456 8999998864
No 469
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.60 E-value=5.4e-08 Score=130.07 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 614 SGLSTEQRKRLTIAVELV----SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
..||||||||++||++++ .+|++++|||||++||+.+...+.+.|+++++ +.++|++||++. ....||+++.+
T Consensus 1088 ~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLYGV 1164 (1179)
T ss_pred cccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHeee
Confidence 479999999999999984 67799999999999999999999999999865 578999999976 46789998766
Q ss_pred e
Q 043954 690 K 690 (1045)
Q Consensus 690 ~ 690 (1045)
.
T Consensus 1165 ~ 1165 (1179)
T TIGR02168 1165 T 1165 (1179)
T ss_pred e
Confidence 4
No 470
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.58 E-value=1.3e-07 Score=102.75 Aligned_cols=136 Identities=25% Similarity=0.368 Sum_probs=82.6
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC-eeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGG-YPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP 580 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g-~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~ 580 (1045)
|++..|+||+|+|||||.-.++=... +|.=.+++ ... .....+-|+.-++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~---~~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKV---TEPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCccccCCcccc---CCCceEEEEECCC----------------------
Confidence 67899999999999999987763211 22111111 110 0112233433211
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHH----------------HHhhCCCeEEEeCCCC
Q 043954 581 EIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAV----------------ELVSNPSIIFMDEPTS 644 (1045)
Q Consensus 581 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~----------------aL~~~p~illLDEPts 644 (1045)
+.++..++++.+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 --~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 52 --PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred --CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 22333445666666665544333332 2244555554443 335799999999 765
Q ss_pred ------CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCc
Q 043954 645 ------GLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPS 676 (1045)
Q Consensus 645 ------gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 676 (1045)
.+|+.....+++.|++++++ |.++++++|...
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999998865 889999999753
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.57 E-value=1.7e-07 Score=109.80 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=92.4
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHH
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
.++++.+..+++|++++++||||+||||++..|++... ...|. +.++++.++. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~--------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA--------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC--------------CeEEEEeCCc---cchhHHHH
Confidence 35667777788999999999999999999999998653 11221 1356777754 34689999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-----CeEEEeCCCC
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNP-----SIIFMDEPTS 644 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p-----~illLDEPts 644 (1045)
|.+.+....-.. ...+...+...+..++.+....++...| .|.... ++.-..+++.++ .+|+||.++.
T Consensus 305 Lr~~AeilGVpv---~~~~~~~Dl~~aL~~L~d~d~VLIDTaG---r~~~d~-~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 305 LRIYGKILGVPV---HAVKDAADLRLALSELRNKHIVLIDTIG---MSQRDR-MVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHHhCCCe---eccCCchhHHHHHHhccCCCeEEeCCCC---cChhhH-HHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 998765542111 1111112333445567766566665332 222111 233444455554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 043954 645 GLDARAAAIVMRAVKNVVRTGRTTVCTIH 673 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H 673 (1045)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344555555445666566665
No 472
>PRK02224 chromosome segregation protein; Provisional
Probab=98.53 E-value=1.6e-07 Score=121.48 Aligned_cols=76 Identities=28% Similarity=0.368 Sum_probs=66.5
Q ss_pred CCCCHHHHH------HHHHHHHHhhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEecCCcHHHH
Q 043954 614 SGLSTEQRK------RLTIAVELVSN-----P-SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGR-TTVCTIHQPSIDVF 680 (1045)
Q Consensus 614 ~~LSgGqrq------Rv~ia~aL~~~-----p-~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~~~H~~~~~~~ 680 (1045)
..||||||+ |+++|++++.+ | +++++||||++||+.....+.+.|+++.+.|. +||++||++. ..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~~ 857 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--LV 857 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--HH
Confidence 479999999 99999999864 3 67999999999999999999999999876665 7999999975 56
Q ss_pred HhcceEEEEec
Q 043954 681 EAFDELLLMKA 691 (1045)
Q Consensus 681 ~~~d~v~~l~~ 691 (1045)
..+|+++.+.+
T Consensus 858 ~~ad~~~~~~~ 868 (880)
T PRK02224 858 GAADDLVRVEK 868 (880)
T ss_pred HhcCeeEEeec
Confidence 78999999974
No 473
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.47 E-value=1.8e-07 Score=124.91 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 614 SGLSTEQRKRLTIAVELVS----NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
..||||||++++||++++. +|++++||||+++||+.....+.+.|+++++ +..+|++||++. ....||+++.+
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIGV 1149 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEeE
Confidence 4799999999999999985 6799999999999999999999999999865 578999999974 67899999887
Q ss_pred ec
Q 043954 690 KA 691 (1045)
Q Consensus 690 ~~ 691 (1045)
..
T Consensus 1150 ~~ 1151 (1164)
T TIGR02169 1150 TM 1151 (1164)
T ss_pred EE
Confidence 64
No 474
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.46 E-value=3.9e-06 Score=81.86 Aligned_cols=59 Identities=29% Similarity=0.308 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH------HHHHHHHcCCEEEEEec
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMR------AVKNVVRTGRTTVCTIH 673 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~------~l~~l~~~g~tvi~~~H 673 (1045)
...+++..+..++++--.+|.++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 467888888888888888899999999999999998877664 22233344778888888
No 475
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.44 E-value=4.1e-06 Score=84.25 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=95.1
Q ss_pred HHhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchh--HHHHHHHHHHHHHHHHHHHHHHH
Q 043954 867 ATERTVLYREKFAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAY--KVFWYFYATLCTFLYFVYLGMFL 944 (1045)
Q Consensus 867 ~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~--~f~~~~~~~~~~~~~~~~~~~~~ 944 (1045)
-.|+.++.|-+..-. +.+.++++|++...-..+++.++..++.+. .|.+.... ..+.+++...+.......++..+
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~ 92 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAM 92 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888777 899999999999999999988877777754 48876532 22233333333344455556655
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHH
Q 043954 945 VSVCPGVEIASVLATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGL 998 (1045)
Q Consensus 945 ~~~~~~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l 998 (1045)
+...++.+..+ ....+..++.+.+|.+.|.+++|+|++|+.+++|++|+.+++
T Consensus 93 a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 93 ALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHH
Confidence 55455554333 456677888899999999999999999999999999999986
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.41 E-value=3e-07 Score=95.85 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=61.0
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCC--ccCCCCCHHH
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTD--IHSPQITVEE 568 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~--~~~~~lTv~e 568 (1045)
..+=+.+.+++|+.++|+||||||||||+++|+|..+ +..|.|.+++........+..++++.|.+ ...+..|+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4555667899999999999999999999999999887 46789999775322112233455555443 3456788999
Q ss_pred HHHHHhhh
Q 043954 569 SVKFSAWL 576 (1045)
Q Consensus 569 ~l~~~~~~ 576 (1045)
.+....+.
T Consensus 92 ~l~~~lR~ 99 (186)
T cd01130 92 LLRSALRM 99 (186)
T ss_pred HHHHHhcc
Confidence 88876543
No 477
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.41 E-value=2.1e-05 Score=87.03 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=125.9
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHhhccccC-----Cc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Q 043954 154 LLMKRNSFVYVFKTAQLAITAIITMTVFIRTQM-----KL-DLMHANFMMGSLYYAIVRLMTNGVAELSLTITRLPVVYR 227 (1045)
Q Consensus 154 ~~~~Rd~~~~~~r~~~~i~~~li~G~if~~~~~-----~~-~~~~~~~~~g~lF~~~~~~~~~~~~~i~~~~~er~vf~r 227 (1045)
............+....+..+...+..+.+.+. .. .+.......|.+.+..++...........-..++..+.|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 122 (286)
T COG0842 43 QVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLER 122 (286)
T ss_pred eeeeecccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHH
Confidence 333444444445555555566666665543320 11 111112223444444433332222111111112233333
Q ss_pred hhcCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HccCchHHH
Q 043954 228 QRSFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIERFFCQFFLLFALHLASTSMCRLFA-STFQTMVIA 306 (1045)
Q Consensus 228 E~~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~~Ff~f~l~~~l~~~~~~s~~~~i~-a~~~~~~~A 306 (1045)
=..+..-+ ..+++++.+...-...+...+...++.+..| ......++....++.+......++|.+++ ...++.+.+
T Consensus 123 ~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~ 200 (286)
T COG0842 123 LLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCA 200 (286)
T ss_pred HHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333333 5577777777777777777777777777777 44445666677777778888888888666 367889999
Q ss_pred HHHHHHHHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHhhhc
Q 043954 307 TTVGSLALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGISLNE 354 (1045)
Q Consensus 307 ~~i~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~~ne 354 (1045)
..+++++..++..++|.+.|.+.+|.|++|+.++.|..|+.+++-...
T Consensus 201 ~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~ 248 (286)
T COG0842 201 SAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVY 248 (286)
T ss_pred HHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988644
No 478
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=5.6e-07 Score=103.42 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 615 GLSTEQRKRLTIAVELVS---------NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~---------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. |..+++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 489999999999999999 99999999999999999999999999753 679999999864
No 479
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.32 E-value=5.4e-06 Score=83.39 Aligned_cols=128 Identities=10% Similarity=0.033 Sum_probs=94.7
Q ss_pred cchhhhhhhcCcccchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCcccchh--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043954 221 RLPVVYRQRSFLLYSAWAYSLPASILKIPLSLAEALIWTALTYYVIGYSPEIE--RFFCQFFLLFALHLASTSMCRLFAS 298 (1045)
Q Consensus 221 er~vf~rE~~~g~Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL~~~~~--~Ff~f~l~~~l~~~~~~s~~~~i~a 298 (1045)
|+.++.|-+..-. +.+.|+++|.++..-..++..++..++.+. .|.+.... ..+.++++..+......+++..++.
T Consensus 17 ~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~ 94 (152)
T TIGR01248 17 EIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMAL 94 (152)
T ss_pred HhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544 689999999999999999988877777764 48887742 2333333334445555566666655
Q ss_pred ccCchHHHHHHHHHHHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHHh
Q 043954 299 TFQTMVIATTVGSLALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGIS 351 (1045)
Q Consensus 299 ~~~~~~~A~~i~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal~ 351 (1045)
..++.+ +.....++.+|++..+|.+.|.+++|.|++|+.+++|++|+.+++=
T Consensus 95 ~~~~~~-~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 95 RKEGRF-AMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HcCCHH-HHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 555554 4445688889999999999999999999999999999999999874
No 480
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.32 E-value=7.9e-08 Score=114.93 Aligned_cols=167 Identities=19% Similarity=0.211 Sum_probs=98.1
Q ss_pred cccccc-cceecCceEEEEecCCCCCHHHHHHHH--hCCCCCCeEEEEEEECCeeCCcccc---cccceEeecCCccCCC
Q 043954 490 QLLHDI-TGAFRPGILTALMGVSGAGKTTLMDVL--SGRKTGGIIQGEIRVGGYPKVQKTF---ARISGYCEQTDIHSPQ 563 (1045)
Q Consensus 490 ~iL~~v-s~~i~~Ge~~~i~G~sGaGKSTLl~~l--~G~~~~~~~~G~I~~~g~~~~~~~~---~~~~~~v~q~~~~~~~ 563 (1045)
+-|+.+ .+=+++|..+.|.||+|||||||..-. .|....+ +..+.+...... .++ .+..|+-.++...-
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g--e~~lyvs~eE~~-~~l~~~~~~~G~~~~~~~~~-- 82 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD--EPGVFVTFEESP-QDIIKNARSFGWDLQKLVDE-- 82 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEecCH-HHHHHHHHHcCCCHHHHhhc--
Confidence 346665 678999999999999999999999866 3433211 234444443211 111 12223322211000
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCeEEEeC
Q 043954 564 ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIA--VELVSNPSIIFMDE 641 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia--~aL~~~p~illLDE 641 (1045)
+++.+ + .. ... ...+.+++.+++.+..+... +.+|+|++|||.|+ .+|..+|+..
T Consensus 83 ----g~l~~---~--~~--~~~---~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~---- 139 (484)
T TIGR02655 83 ----GKLFI---L--DA--SPD---PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV---- 139 (484)
T ss_pred ----CceEE---E--ec--Cch---hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch----
Confidence 00000 0 00 000 00111233344444455444 36999999999999 6666665543
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHH-------H-HHhcceEEEEe
Q 043954 642 PTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSID-------V-FEAFDELLLMK 690 (1045)
Q Consensus 642 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-------~-~~~~d~v~~l~ 690 (1045)
...++.+.++++.+++.|.|+|+++|+.... + ..++|.|+.|+
T Consensus 140 ------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999986420 1 34678898885
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.32 E-value=1.9e-06 Score=98.54 Aligned_cols=57 Identities=18% Similarity=0.364 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 625 TIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 625 ~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+++++|-.+|+++++||+. |+++....++ .+..|++++.++|..+ .....+|++-|-
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHhc
Confidence 3667888999999999997 8888765444 3567999999999876 456778877653
No 482
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.29 E-value=1e-05 Score=103.01 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHH
Q 043954 626 IAVELVSNPSIIFMDEPTSGL-DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVF 680 (1045)
Q Consensus 626 ia~aL~~~p~illLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~ 680 (1045)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++ ++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh
Confidence 677889999999999999999 799999999999999888999999999986 344
No 483
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.27 E-value=7.9e-06 Score=95.46 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=102.0
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-----------ccccccceEeecC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-----------KTFARISGYCEQT 557 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-----------~~~~~~~~~v~q~ 557 (1045)
..+++++ +.+.+||.++|+|+||+|||||+++|+|... +..|.+...|..... ...++.+.++.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~ 227 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS 227 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence 5689999 9999999999999999999999999999876 346666665553211 0111222222221
Q ss_pred CccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH-HHHHHHHHHHHHhhCCCe
Q 043954 558 DIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST-EQRKRLTIAVELVSNPSI 636 (1045)
Q Consensus 558 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg-GqrqRv~ia~aL~~~p~i 636 (1045)
+. +..+-..- ....-. +.|....-| .|..+=- ..|+- -|-+| .|+
T Consensus 228 d~-----~p~~r~~~-----------~~~a~t-~AE~frd~G----~~Vll~~---DslTr~A~A~R-Eis--------- 273 (440)
T TIGR01026 228 DQ-----SPLLRLKG-----------AYVATA-IAEYFRDQG----KDVLLLM---DSVTRFAMAQR-EIG--------- 273 (440)
T ss_pred CC-----CHHHHHHH-----------HHHHHH-HHHHHHHCC----CCEEEEE---eChHHHHHHHH-HHH---------
Confidence 11 11111100 000011 222222223 2222110 01221 11111 111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------EEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 637 IFMDEP--TSGLDARAAAIVMRAVKNVVRTGR-------TTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 637 llLDEP--tsgLD~~~~~~i~~~l~~l~~~g~-------tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
+.+.|| +.|+|+.....+.+++.+....+. ||++.+|+.+ -..+|++.-+. +|+++.++..
T Consensus 274 l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~-dG~ivLsr~l 343 (440)
T TIGR01026 274 LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGIL-DGHIVLSRAL 343 (440)
T ss_pred HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhcccc-ceEEEEecch
Confidence 345575 559999999999999999876667 7888889864 34678888887 5999998865
No 484
>PRK14079 recF recombination protein F; Provisional
Probab=98.25 E-value=1.8e-06 Score=98.82 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcce
Q 043954 615 GLSTEQRKRLTIAVELV---------SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDE 685 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 685 (1045)
-+|+||+|++++|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999999 899999999999999999999999888653 24555555433 47899
Q ss_pred EEEEecCcEEEE
Q 043954 686 LLLMKAGGRIIY 697 (1045)
Q Consensus 686 v~~l~~gG~~~~ 697 (1045)
++.+.+ |++.-
T Consensus 335 ~~~~~~-~~~~~ 345 (349)
T PRK14079 335 TLRIEA-GVFTP 345 (349)
T ss_pred EEEEec-cEecC
Confidence 999974 76543
No 485
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.23 E-value=3.4e-06 Score=108.84 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=69.5
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhc
Q 043954 612 GQSGLSTEQRKRLTIAVELV------SN--PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAF 683 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~------~~--p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 683 (1045)
....|||||+-.++||.+|+ .+ -+.++|||||..||+.+...+++.|..+...+++|++|||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 34679999999888777663 45 689999999999999999999999999988899999999985 577899
Q ss_pred ceEEEEecCc
Q 043954 684 DELLLMKAGG 693 (1045)
Q Consensus 684 d~v~~l~~gG 693 (1045)
|.++.+...|
T Consensus 890 ~~~i~V~k~~ 899 (908)
T COG0419 890 DVRIRVKKDG 899 (908)
T ss_pred CeEEEEEecC
Confidence 9999987544
No 486
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.22 E-value=6e-07 Score=96.91 Aligned_cols=46 Identities=28% Similarity=0.431 Sum_probs=33.4
Q ss_pred ccccc-cceecCceEEEEecCCCCCHHHHHHHHh--CCCCCCeEEEEEEECC
Q 043954 491 LLHDI-TGAFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGIIQGEIRVGG 539 (1045)
Q Consensus 491 iL~~v-s~~i~~Ge~~~i~G~sGaGKSTLl~~l~--G~~~~~~~~G~I~~~g 539 (1045)
-|+++ .+-+++|++++|.||+|+|||||...++ +..+ + ++.+.+..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g--~~~~~is~ 56 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-G--DPVIYVTT 56 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-C--CeEEEEEc
Confidence 46664 5679999999999999999999988655 3322 2 34455554
No 487
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.21 E-value=2.7e-06 Score=107.90 Aligned_cols=137 Identities=22% Similarity=0.223 Sum_probs=86.2
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHH
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
.+-+|+++. +.+.++.|.|||++||||+||.++-..- ..+.-.|||-+...+ .+.|
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-------------------lAq~G~~VPa~~a~i---~~~d- 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-------------------LAQIGSFVPAESARI---GIVD- 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-------------------HHhcCCceeccceEe---cccC-
Confidence 466777777 6788999999999999999999874210 111223444322111 1111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh--CCCeEEEeCC---CC
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS--NPSIIFMDEP---TS 644 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~--~p~illLDEP---ts 644 (1045)
.+..++|- .|... +++|-=+.....++..|-. +++++++||| |+
T Consensus 652 -----------------------~I~triga---~d~i~-----~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGA---SDDLA-----SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCc---ccccc-----cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 11111221 12221 3577766666667766654 9999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcce
Q 043954 645 GLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDE 685 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 685 (1045)
.+|..+ .....++.+.+. |.+++++||.. ++.+.+++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 999444 455566666665 58999999984 56666654
No 488
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=1.4e-06 Score=100.78 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=67.5
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCe-EEEEEEECCeeCCc---------ccccccceEeecC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IQGEIRVGGYPKVQ---------KTFARISGYCEQT 557 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~-~~G~I~~~g~~~~~---------~~~~~~~~~v~q~ 557 (1045)
...+++++ +.+.+||+++|+|+||+|||||+++|+|...+.. .-|.|-.+|.+... ...+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35699999 9999999999999999999999999999876432 23555555544321 1123468999999
Q ss_pred CccCCCCCHHHHHHHHhhh
Q 043954 558 DIHSPQITVEESVKFSAWL 576 (1045)
Q Consensus 558 ~~~~~~lTv~e~l~~~~~~ 576 (1045)
+.....+++.|++...+..
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999998766543
No 489
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.11 E-value=0.00011 Score=81.13 Aligned_cols=200 Identities=19% Similarity=0.229 Sum_probs=120.9
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCC-----CCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhHHHHHHHh
Q 043954 803 WRSPEYNMARFVFMIFAALLFGAVVWQKGK-----EINKEEDLIVILGSMYIAVIFLGVNYCSTVLPYVATERTVLYREK 877 (1045)
Q Consensus 803 ~R~~~~~~~r~~~~~~~~li~G~~f~~~~~-----~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~ 877 (1045)
.........+....+..+...+..+.+.+. ............|.+.+..++.+.......... ..++..+.|=.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~ 124 (286)
T COG0842 46 VDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFR-EREFGTLERLL 124 (286)
T ss_pred eecccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHh-HHhhCcHHHHH
Confidence 333344444444455555555555554431 111111112233444444444433222121110 12444555555
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHH
Q 043954 878 FAGMYSPWAYSFAQVTIEIPYIMLHAIIYVAITYPAIGYYWSAYKVFWYFYATLCTFLYFVYLGMFLV-SVCPGVEIASV 956 (1045)
Q Consensus 878 ~~~~Y~~~~y~~a~~l~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~ 956 (1045)
.+..-+ ..+++++.+...-...+...+...+..+..|. .....+........+......++|.+++ ....+.+.+..
T Consensus 125 ~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 202 (286)
T COG0842 125 VSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASA 202 (286)
T ss_pred hCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555533 56667777776666666666666666666663 2334445555555556667777787544 26677888889
Q ss_pred HHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCC
Q 043954 957 LATAIYTILNLFSGFLLPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGD 1005 (1045)
Q Consensus 957 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ef~~ 1005 (1045)
++.++..++..++|.+.|.+.+|.|++|+.+++|.+|+.+++-....++
T Consensus 203 ~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~ 251 (286)
T COG0842 203 VGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGG 251 (286)
T ss_pred HHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999976555544
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.10 E-value=3.1e-06 Score=89.19 Aligned_cols=112 Identities=17% Similarity=0.209 Sum_probs=61.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhh-hcCCCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAW-LRLPPEI 582 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~~ 582 (1045)
+++|.||||||||||.+.|++.... |++.+ +++++.+ ..++..+....... ...+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~----~~~~v----------------~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN----PKVVI----------------ISQDSYY-KDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC----CCeEE----------------EEecccc-cccccccHHHhccCCCCCCCcc
Confidence 4799999999999999999986531 22222 2222111 11122221111100 0111111
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 583 DSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 583 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
+. +...+.++.+...+..+.+. ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 60 ~~----~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DF----DLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cH----HHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 11 12334555555443333333 2577777776555 5788999999999999986
No 491
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.01 E-value=7.1e-06 Score=109.03 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHH----HHHH--------HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 043954 614 SGLSTEQRKRLT----IAVE--------LVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQP 675 (1045)
Q Consensus 614 ~~LSgGqrqRv~----ia~a--------L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 675 (1045)
.+||||||||++ +|++ +..+|++++|||||+|||+.....++++++++ |.++|+++|..
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 479999999996 5655 55899999999999999999999999999887 78999999974
No 492
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.99 E-value=1.5e-05 Score=105.43 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=36.5
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGG 539 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g 539 (1045)
=+++..+++++++|+|++|+|||||++.+.+.... ...|.+.+++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeec
Confidence 34567788999999999999999999999876542 3468888875
No 493
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=1.1e-05 Score=93.48 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=53.2
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe---eCCc-------ccccccceEeecCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY---PKVQ-------KTFARISGYCEQTD 558 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~---~~~~-------~~~~~~~~~v~q~~ 558 (1045)
..+++.++ .+.+||.++|+||||||||||+++|++..+ +..|.|.+.|+ ++.. ...++.+++++|.+
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~--pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA--FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence 56888886 899999999999999999999999999876 46798888653 3221 11235689999966
Q ss_pred c
Q 043954 559 I 559 (1045)
Q Consensus 559 ~ 559 (1045)
.
T Consensus 230 ~ 230 (450)
T PRK06002 230 E 230 (450)
T ss_pred C
Confidence 3
No 494
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.96 E-value=0.00012 Score=93.18 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHhhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 629 ELVSNPSIIFMDEPTSGLD-ARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 629 aL~~~p~illLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+++
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4567899999999999999 88999999999999888999999999975
No 495
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.95 E-value=6e-06 Score=85.15 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=41.7
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-ccc-ccceEeecCCccCCCCCHHHHH
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-TFA-RISGYCEQTDIHSPQITVEESV 570 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-~~~-~~~~~v~q~~~~~~~lTv~e~l 570 (1045)
+||+++|+|+||||||||+++|+|+... +.++|.+.... ..+ ...|+.+|+....+..++.+++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~ 67 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDA 67 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 6999999999999999999999998752 46777664321 111 1245555554333444444443
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.86 E-value=1.3e-05 Score=66.68 Aligned_cols=34 Identities=35% Similarity=0.575 Sum_probs=27.3
Q ss_pred cccccceecC-ceEEEEecCCCCCHHHHHHHHhCC
Q 043954 492 LHDITGAFRP-GILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 492 L~~vs~~i~~-Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++.++++.+ |+++.|.||||||||||++++.=.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4445566765 569999999999999999998753
No 497
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.85 E-value=9.3e-05 Score=82.04 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=32.3
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.+.|+++.+-+++|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468888888999999999999999999999887653
No 498
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.84 E-value=1.9e-05 Score=89.73 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=57.8
Q ss_pred ccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccc-----
Q 043954 419 RAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLH----- 493 (1045)
Q Consensus 419 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~----- 493 (1045)
++..+.+|++++++.++..... + . . ..-.+.|+||++.++. ++.+|+
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~~---~---e--~--------~~~ri~Fe~LTf~YP~------------er~~Le~~~~~ 153 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGDD---P---E--K--------AKNRVLFENLTPLYPN------------ERLRLETSTED 153 (415)
T ss_pred eccccHhHHHHHhCCCccCCCC---c---c--c--------cCCCeEEEEeeecCCC------------ccceeecCccc
Confidence 3445678888877654431110 0 0 0 0124789999997742 235675
Q ss_pred ------cccceecCceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 494 ------DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 494 ------~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
|+++.|.+|+.++|+||+|+|||||++.|+....
T Consensus 154 ~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 154 LSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred cceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999987543
No 499
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.80 E-value=0.0013 Score=71.34 Aligned_cols=194 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccc--cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 043954 146 QACMSRELLLMKRNSFVYVFKTAQLAITAIITMTVFIRT--QMKLDLMHANFMMGSLYYAIVRLMTNGVAELSLTITRLP 223 (1045)
Q Consensus 146 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~if~~~--~~~~~~~~~~~~~g~lF~~~~~~~~~~~~~i~~~~~er~ 223 (1045)
+.+.+|+++...|.|..+..-.+-.++.| +....|... ....+..+.+...+..-+..++..-.- -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~l---------~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANG-LFLWVFPGDFNILDYGYADLTPFFSLAPWVFLFLIPAI---------TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHhhhhhHHhcCcchHHHHHHHHHHHHHHHHHHH---------HHH
Q ss_pred hhhhhhcCcc--------cchhhHHHhHHhHhhhHHHHHHHHHHhhhhhccCc-----ccchhHHHHHHHHHHHHHHHHH
Q 043954 224 VVYRQRSFLL--------YSAWAYSLPASILKIPLSLAEALIWTALTYYVIGY-----SPEIERFFCQFFLLFALHLAST 290 (1045)
Q Consensus 224 vf~rE~~~g~--------Y~~~ay~lA~~l~~lP~~~~~~~if~~I~Yfm~GL-----~~~~~~Ff~f~l~~~l~~~~~~ 290 (1045)
.+-|||++|. -+.+.+++||.++-.-..++..+...+..+....+ +.+.+.++...+..++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHhhhcceeCCCCCCccchhhhhhChhHHHHHHH
Q 043954 291 SMCRLFASTFQTMVIATTVGSLALVLMFLFGGFILPRSSLPPWLSWGFWISLMTYGEIGI 350 (1045)
Q Consensus 291 s~~~~i~a~~~~~~~A~~i~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yis~~~Yafeal 350 (1045)
++|.++|+++++...|..++..+...+.+..+..-+. ..|+|..|+.|+||.+|-.+..
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~l~~~sp~~~~~~~~ 210 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFLFYFGFDGLASL-LWGGSAYTISELGLSYHYESIS 210 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHcCHHHHHHHHH
No 500
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.78 E-value=4.3e-05 Score=69.49 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=35.6
Q ss_pred CCCHHHH-HHHHHHHH------Hhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 043954 615 GLSTEQR-KRLTIAVE------LVS------NPSIIFMDEPTSGLDARAAAIVMRAVKN 660 (1045)
Q Consensus 615 ~LSgGqr-qRv~ia~a------L~~------~p~illLDEPtsgLD~~~~~~i~~~l~~ 660 (1045)
++||||| ..++++.+ +-. .|++++||||+++||+.....+++.|++
T Consensus 32 ~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 32 TLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 6999999 44444433 333 3689999999999999999999999874
Done!