Query 043954
Match_columns 1045
No_of_seqs 625 out of 4753
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 1.4E-44 4.7E-49 388.7 27.9 221 464-703 2-231 (235)
2 3tui_C Methionine import ATP-b 100.0 8.1E-45 2.8E-49 409.1 26.6 219 463-702 24-249 (366)
3 3rlf_A Maltose/maltodextrin im 100.0 2E-44 6.8E-49 408.6 26.0 216 463-703 3-220 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 9.9E-45 3.4E-49 408.5 23.3 216 463-703 4-225 (359)
5 3gfo_A Cobalt import ATP-bindi 100.0 2.2E-44 7.6E-49 394.5 24.9 217 463-703 7-230 (275)
6 2pcj_A ABC transporter, lipopr 100.0 3.5E-44 1.2E-48 383.0 25.5 213 463-701 4-223 (224)
7 2olj_A Amino acid ABC transpor 100.0 5.4E-44 1.8E-48 389.3 26.3 214 463-701 24-243 (263)
8 1b0u_A Histidine permease; ABC 100.0 6.6E-44 2.2E-48 389.6 25.4 214 463-701 6-237 (262)
9 1g6h_A High-affinity branched- 100.0 7.5E-44 2.6E-48 388.4 23.7 218 463-702 7-238 (257)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.2E-43 4.2E-48 385.2 25.1 214 463-701 15-230 (256)
11 1z47_A CYSA, putative ABC-tran 100.0 2.1E-43 7.3E-48 398.1 26.0 217 462-702 13-231 (355)
12 3nh6_A ATP-binding cassette SU 100.0 1.7E-44 5.9E-49 400.3 16.0 248 415-702 16-273 (306)
13 2yyz_A Sugar ABC transporter, 100.0 1.8E-43 6E-48 399.9 24.4 214 464-702 4-219 (359)
14 2it1_A 362AA long hypothetical 100.0 2.1E-43 7.3E-48 399.6 24.9 214 464-702 4-219 (362)
15 1g29_1 MALK, maltose transport 100.0 3.8E-43 1.3E-47 400.0 26.0 215 463-702 3-225 (372)
16 4g1u_C Hemin import ATP-bindin 100.0 1.9E-43 6.5E-48 386.2 22.4 214 463-703 11-234 (266)
17 1ji0_A ABC transporter; ATP bi 100.0 2.5E-43 8.7E-48 380.3 23.0 214 463-702 6-224 (240)
18 1oxx_K GLCV, glucose, ABC tran 100.0 2.4E-43 8.2E-48 399.2 22.9 214 464-702 4-226 (353)
19 1v43_A Sugar-binding transport 100.0 3.4E-43 1.1E-47 399.4 23.4 214 464-702 12-227 (372)
20 3d31_A Sulfate/molybdate ABC t 100.0 9.4E-43 3.2E-47 392.8 21.6 210 464-702 2-213 (348)
21 2onk_A Molybdate/tungstate ABC 100.0 2.1E-42 7.3E-47 372.1 23.4 208 464-701 2-211 (240)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 1.9E-42 6.5E-47 375.8 22.7 217 464-702 4-229 (250)
23 2yz2_A Putative ABC transporte 100.0 2E-42 6.7E-47 379.0 22.7 217 464-701 3-222 (266)
24 4f4c_A Multidrug resistance pr 100.0 1.4E-41 4.9E-46 446.0 31.0 248 419-702 1043-1300(1321)
25 2ihy_A ABC transporter, ATP-bi 100.0 2.2E-42 7.7E-47 380.1 19.4 219 463-703 21-249 (279)
26 2zu0_C Probable ATP-dependent 100.0 1.2E-41 4.1E-46 372.7 24.9 223 461-702 18-250 (267)
27 2nq2_C Hypothetical ABC transp 100.0 5.3E-41 1.8E-45 364.4 24.4 209 463-703 4-214 (253)
28 2qi9_C Vitamin B12 import ATP- 100.0 3.2E-41 1.1E-45 364.8 22.5 205 463-702 4-218 (249)
29 2ixe_A Antigen peptide transpo 100.0 1.7E-41 5.9E-46 372.1 18.7 219 463-702 16-241 (271)
30 1sgw_A Putative ABC transporte 100.0 1E-41 3.4E-46 359.9 15.3 202 462-695 9-210 (214)
31 2ff7_A Alpha-hemolysin translo 100.0 2.4E-41 8.2E-46 366.1 18.5 213 461-701 5-227 (247)
32 3qf4_A ABC transporter, ATP-bi 100.0 9.8E-42 3.3E-46 414.2 16.9 249 416-703 305-563 (587)
33 4a82_A Cystic fibrosis transme 100.0 1.3E-41 4.4E-46 413.1 15.8 247 417-702 304-560 (578)
34 2yl4_A ATP-binding cassette SU 100.0 1.5E-40 5.1E-45 405.4 20.9 252 417-703 305-567 (595)
35 3qf4_B Uncharacterized ABC tra 100.0 2.4E-41 8.3E-46 412.0 13.0 245 417-702 320-574 (598)
36 3b5x_A Lipid A export ATP-bind 100.0 1.4E-40 4.8E-45 404.6 19.3 247 416-702 307-563 (582)
37 3b60_A Lipid A export ATP-bind 100.0 3.4E-40 1.2E-44 401.3 22.2 247 416-702 307-563 (582)
38 1mv5_A LMRA, multidrug resista 100.0 2.2E-40 7.6E-45 358.2 17.9 211 464-702 2-222 (243)
39 2ghi_A Transport protein; mult 100.0 1.5E-39 5E-44 354.8 22.6 211 463-701 17-237 (260)
40 3g5u_A MCG1178, multidrug resi 100.0 4.6E-38 1.6E-42 411.8 39.3 258 412-702 989-1254(1284)
41 4f4c_A Multidrug resistance pr 100.0 1.6E-40 5.5E-45 436.0 15.5 251 416-703 378-638 (1321)
42 2pjz_A Hypothetical protein ST 100.0 1.6E-39 5.5E-44 354.0 20.6 206 464-701 2-210 (263)
43 2pze_A Cystic fibrosis transme 100.0 1E-38 3.5E-43 341.9 20.3 200 463-701 6-213 (229)
44 3gd7_A Fusion complex of cysti 100.0 2.1E-39 7.2E-44 370.5 15.3 211 462-702 18-238 (390)
45 2cbz_A Multidrug resistance-as 100.0 1.5E-38 5.2E-43 342.1 19.4 203 464-702 4-213 (237)
46 3g5u_A MCG1178, multidrug resi 100.0 1.7E-38 5.7E-43 416.0 16.0 252 417-703 351-610 (1284)
47 2bbs_A Cystic fibrosis transme 100.0 1.7E-36 5.8E-41 334.6 17.9 196 463-702 40-243 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 2.4E-33 8.4E-38 339.0 20.2 204 462-704 356-561 (607)
49 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-33 1.2E-37 333.5 19.9 217 462-715 268-486 (538)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 3.4E-33 1.2E-37 334.6 18.6 204 462-704 286-491 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 8.6E-32 2.9E-36 324.8 19.3 201 490-715 361-568 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 2.6E-32 8.7E-37 327.0 11.3 180 490-690 36-232 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 3.5E-32 1.2E-36 328.9 11.5 180 490-690 106-302 (607)
54 3ux8_A Excinuclease ABC, A sub 100.0 2.7E-31 9.3E-36 328.4 16.2 207 488-703 30-295 (670)
55 2iw3_A Elongation factor 3A; a 100.0 2.1E-30 7.3E-35 322.6 19.6 194 463-702 435-631 (986)
56 2iw3_A Elongation factor 3A; a 100.0 4.8E-31 1.6E-35 328.4 12.2 208 462-700 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.1E-29 3.7E-34 314.1 18.0 194 489-701 335-635 (670)
58 3ozx_A RNAse L inhibitor; ATP 100.0 1.5E-29 5.1E-34 302.2 10.0 173 499-694 22-214 (538)
59 3j16_B RLI1P; ribosome recycli 100.0 2.4E-29 8.2E-34 303.5 11.0 188 490-697 92-301 (608)
60 2r6f_A Excinuclease ABC subuni 100.0 9.5E-28 3.3E-32 296.2 19.7 196 490-701 638-937 (972)
61 3pih_A Uvrabc system protein A 99.9 8.3E-28 2.8E-32 299.6 19.0 198 489-702 597-898 (916)
62 2vf7_A UVRA2, excinuclease ABC 99.9 1.9E-27 6.4E-32 294.1 19.8 195 491-701 512-822 (842)
63 2ygr_A Uvrabc system protein A 99.9 4.2E-27 1.4E-31 291.6 19.1 196 491-702 657-956 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 9.4E-29 3.2E-33 289.5 -4.7 196 493-714 129-350 (460)
65 4aby_A DNA repair protein RECN 99.9 1.1E-25 3.6E-30 263.4 15.7 205 489-699 48-381 (415)
66 3b85_A Phosphate starvation-in 99.9 6.3E-27 2.1E-31 246.1 -12.5 144 487-676 11-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2E-22 7E-27 230.4 20.1 81 614-697 278-364 (365)
68 1e69_A Chromosome segregation 99.9 6.3E-23 2.1E-27 231.2 14.8 86 614-702 218-309 (322)
69 4gp7_A Metallophosphoesterase; 99.9 6.5E-24 2.2E-28 216.8 5.4 143 494-676 1-160 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 6.8E-25 2.3E-29 252.2 -7.8 171 489-687 36-248 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 1.7E-22 5.7E-27 207.3 5.2 147 504-698 2-160 (178)
72 1znw_A Guanylate kinase, GMP k 99.8 1.1E-24 3.8E-29 229.7 -15.8 185 488-694 8-206 (207)
73 2v9p_A Replication protein E1; 99.8 2.9E-24 1E-28 237.2 -16.4 203 417-715 68-271 (305)
74 3sop_A Neuronal-specific septi 99.8 2.2E-22 7.4E-27 220.3 -7.4 147 504-675 4-150 (270)
75 3b9q_A Chloroplast SRP recepto 99.8 2.3E-21 7.8E-26 215.4 0.4 154 492-674 90-256 (302)
76 2vf7_A UVRA2, excinuclease ABC 99.8 3.7E-19 1.3E-23 220.2 18.5 108 588-703 357-472 (842)
77 2pt7_A CAG-ALFA; ATPase, prote 99.8 7.9E-21 2.7E-25 214.0 1.6 130 490-691 159-289 (330)
78 1z6g_A Guanylate kinase; struc 99.8 3.2E-23 1.1E-27 220.3 -18.5 155 489-663 10-175 (218)
79 2og2_A Putative signal recogni 99.8 1.6E-20 5.4E-25 212.3 0.0 153 493-674 148-313 (359)
80 2dpy_A FLII, flagellum-specifi 99.8 5.9E-21 2E-25 222.4 -4.8 174 489-701 145-339 (438)
81 3qkt_A DNA double-strand break 99.8 4.7E-18 1.6E-22 192.7 17.4 75 614-690 247-327 (339)
82 1cr0_A DNA primase/helicase; R 99.8 2.6E-19 9E-24 199.3 6.5 184 489-694 22-236 (296)
83 2o5v_A DNA replication and rep 99.8 2.8E-18 9.6E-23 194.3 13.5 80 615-703 265-353 (359)
84 3aez_A Pantothenate kinase; tr 99.7 1.8E-20 6.1E-25 209.1 -7.5 123 499-648 87-209 (312)
85 3pih_A Uvrabc system protein A 99.7 1.8E-18 6.2E-23 215.8 8.8 163 516-703 382-557 (916)
86 2r6f_A Excinuclease ABC subuni 99.7 3.2E-17 1.1E-21 202.8 16.1 134 562-703 450-597 (972)
87 2o8b_B DNA mismatch repair pro 99.7 3.4E-18 1.2E-22 217.2 4.0 158 488-700 768-936 (1022)
88 1tf7_A KAIC; homohexamer, hexa 99.7 1.2E-19 4E-24 218.0 -9.0 168 488-691 24-209 (525)
89 1tf7_A KAIC; homohexamer, hexa 99.7 2.5E-17 8.7E-22 197.7 10.3 156 496-694 275-444 (525)
90 2jeo_A Uridine-cytidine kinase 99.7 1E-18 3.6E-23 188.9 -1.8 155 487-674 10-164 (245)
91 3thx_A DNA mismatch repair pro 99.7 5.7E-17 1.9E-21 203.4 13.0 150 488-702 648-809 (934)
92 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 6.6E-17 2.3E-21 159.9 10.7 75 614-690 56-136 (148)
93 2eyu_A Twitching motility prot 99.7 1.2E-17 4.1E-22 181.7 5.7 131 490-690 15-146 (261)
94 2ehv_A Hypothetical protein PH 99.7 5E-18 1.7E-22 183.6 2.5 169 491-690 18-206 (251)
95 2ygr_A Uvrabc system protein A 99.7 9.6E-17 3.3E-21 199.3 13.1 135 561-703 466-614 (993)
96 2obl_A ESCN; ATPase, hydrolase 99.7 3.4E-18 1.2E-22 193.2 -1.8 172 489-701 59-250 (347)
97 3thx_B DNA mismatch repair pro 99.7 1E-17 3.6E-22 209.4 1.1 145 488-686 659-805 (918)
98 4a74_A DNA repair and recombin 99.6 2.8E-17 9.7E-22 175.3 2.1 157 491-691 13-199 (231)
99 3asz_A Uridine kinase; cytidin 99.6 1.3E-18 4.4E-23 183.6 -11.6 145 499-675 3-161 (211)
100 1w1w_A Structural maintenance 99.6 1.9E-15 6.4E-20 177.1 13.9 74 616-691 334-411 (430)
101 1rj9_A FTSY, signal recognitio 99.6 3.8E-17 1.3E-21 181.4 -0.6 148 501-675 101-258 (304)
102 2qnr_A Septin-2, protein NEDD5 99.6 8.3E-18 2.8E-22 187.2 -7.3 157 487-676 9-168 (301)
103 1ewq_A DNA mismatch repair pro 99.6 1.4E-16 4.8E-21 196.5 2.6 134 488-683 565-704 (765)
104 1pzn_A RAD51, DNA repair and r 99.6 9.5E-17 3.2E-21 182.2 0.0 166 490-700 118-309 (349)
105 1pui_A ENGB, probable GTP-bind 99.6 1.8E-16 6.1E-21 166.6 -0.9 178 464-667 4-202 (210)
106 2w0m_A SSO2452; RECA, SSPF, un 99.6 5.6E-16 1.9E-20 165.4 2.8 167 489-691 9-191 (235)
107 3szr_A Interferon-induced GTP- 99.6 1.5E-16 5.2E-21 193.3 -2.0 166 496-701 42-232 (608)
108 1wb9_A DNA mismatch repair pro 99.6 9E-16 3.1E-20 190.5 4.5 156 488-699 594-751 (800)
109 3jvv_A Twitching mobility prot 99.6 1.5E-15 5.1E-20 172.1 5.8 125 498-690 119-244 (356)
110 1nlf_A Regulatory protein REPA 99.5 1E-14 3.5E-19 160.7 10.7 151 498-676 26-182 (279)
111 2i3b_A HCR-ntpase, human cance 99.5 2.1E-17 7.3E-22 170.7 -10.4 158 502-700 1-170 (189)
112 2qag_C Septin-7; cell cycle, c 99.5 1.7E-15 5.7E-20 174.8 -3.1 153 487-676 22-178 (418)
113 3kta_B Chromosome segregation 99.5 1.3E-13 4.3E-18 139.9 10.1 74 614-690 63-140 (173)
114 2cvh_A DNA repair and recombin 99.4 9.9E-14 3.4E-18 146.6 7.7 155 489-692 6-185 (220)
115 2qag_B Septin-6, protein NEDD5 99.4 2.8E-14 9.4E-19 163.8 1.8 170 488-674 27-218 (427)
116 4ad8_A DNA repair protein RECN 99.4 2E-13 7E-18 163.4 8.4 75 614-691 395-472 (517)
117 1zp6_A Hypothetical protein AT 99.4 1E-15 3.5E-20 158.4 -10.5 140 498-661 5-147 (191)
118 2f1r_A Molybdopterin-guanine d 99.4 2.5E-15 8.6E-20 152.5 -7.9 139 503-666 3-164 (171)
119 2bdt_A BH3686; alpha-beta prot 99.4 8.1E-16 2.8E-20 159.2 -12.3 167 502-702 2-180 (189)
120 2ewv_A Twitching motility prot 99.4 1.2E-13 4.1E-18 158.0 4.4 131 490-690 126-257 (372)
121 1s96_A Guanylate kinase, GMP k 99.4 2.3E-14 7.8E-19 151.7 -2.3 127 497-676 11-141 (219)
122 1lw7_A Transcriptional regulat 99.4 2.1E-15 7.1E-20 172.8 -11.5 163 491-690 157-342 (365)
123 2gza_A Type IV secretion syste 99.4 1.1E-13 3.6E-18 157.9 2.4 137 491-692 164-302 (361)
124 1nij_A Hypothetical protein YJ 99.4 2.3E-16 8E-21 177.0 -19.7 157 502-676 4-190 (318)
125 2bbw_A Adenylate kinase 4, AK4 99.3 8.6E-15 3E-19 158.2 -9.0 146 501-664 26-199 (246)
126 2rcn_A Probable GTPase ENGC; Y 99.3 4.1E-13 1.4E-17 151.1 3.1 123 491-630 205-328 (358)
127 2yhs_A FTSY, cell division pro 99.3 1.2E-13 4E-18 160.3 -1.8 154 492-674 283-448 (503)
128 2qm8_A GTPase/ATPase; G protei 99.3 1.6E-14 5.4E-19 163.1 -9.4 163 488-663 41-260 (337)
129 1n0w_A DNA repair protein RAD5 99.3 1.8E-12 6.1E-17 139.1 7.0 153 491-691 12-208 (243)
130 3auy_A DNA double-strand break 99.3 6.2E-12 2.1E-16 144.2 11.4 77 614-693 279-362 (371)
131 1htw_A HI0065; nucleotide-bind 99.3 1.8E-13 6.3E-18 136.9 -2.0 80 487-572 18-97 (158)
132 3e70_C DPA, signal recognition 99.2 5.9E-13 2E-17 149.1 -0.5 144 498-674 125-278 (328)
133 2kjq_A DNAA-related protein; s 99.2 9E-12 3.1E-16 123.5 5.4 45 631-676 81-126 (149)
134 1odf_A YGR205W, hypothetical 3 99.2 8.1E-13 2.8E-17 145.7 -2.7 129 499-650 28-169 (290)
135 3ec2_A DNA replication protein 99.2 1.9E-11 6.6E-16 125.1 7.3 47 631-677 98-145 (180)
136 1udx_A The GTP-binding protein 99.2 6.8E-13 2.3E-17 153.0 -4.9 162 492-687 147-320 (416)
137 1p9r_A General secretion pathw 99.1 1.3E-13 4.3E-18 159.4 -12.2 140 481-638 148-314 (418)
138 3c8u_A Fructokinase; YP_612366 99.1 2.1E-13 7.3E-18 143.3 -11.1 120 499-643 19-140 (208)
139 2oap_1 GSPE-2, type II secreti 99.1 3.5E-14 1.2E-18 168.4 -20.1 178 489-683 247-457 (511)
140 2yv5_A YJEQ protein; hydrolase 99.1 2.8E-12 9.7E-17 142.5 -3.5 123 498-629 161-301 (302)
141 3lda_A DNA repair protein RAD5 99.1 5.5E-11 1.9E-15 136.5 6.6 153 491-691 166-362 (400)
142 1sxj_E Activator 1 40 kDa subu 99.1 7.6E-11 2.6E-15 134.1 5.7 136 504-676 38-175 (354)
143 1lvg_A Guanylate kinase, GMP k 99.0 2.7E-14 9.3E-19 149.0 -22.8 56 626-690 116-172 (198)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 6.5E-13 2.2E-17 151.6 -16.2 170 498-702 16-209 (392)
145 1in4_A RUVB, holliday junction 99.0 7.6E-12 2.6E-16 141.4 -7.9 153 488-664 30-195 (334)
146 2x8a_A Nuclear valosin-contain 99.0 1E-12 3.6E-17 144.0 -14.8 143 488-658 32-190 (274)
147 1t9h_A YLOQ, probable GTPase E 98.9 1.1E-10 3.7E-15 129.0 0.5 118 497-623 168-303 (307)
148 1u0l_A Probable GTPase ENGC; p 98.9 3.1E-10 1.1E-14 126.1 0.7 103 497-608 164-289 (301)
149 2dr3_A UPF0273 protein PH0284; 98.8 7.4E-10 2.5E-14 118.8 2.9 60 632-691 127-196 (247)
150 1vma_A Cell division protein F 98.8 2E-09 6.8E-14 119.3 4.8 114 494-662 96-212 (306)
151 2r6a_A DNAB helicase, replicat 98.8 4.4E-09 1.5E-13 123.7 7.8 179 489-692 190-399 (454)
152 1ls1_A Signal recognition part 98.7 1.6E-08 5.5E-13 111.7 9.3 118 493-661 91-209 (295)
153 1sq5_A Pantothenate kinase; P- 98.7 1.8E-09 6.3E-14 120.3 0.2 86 490-577 49-156 (308)
154 2ius_A DNA translocase FTSK; n 98.7 3.9E-10 1.3E-14 132.5 -6.0 164 494-676 159-343 (512)
155 1iy2_A ATP-dependent metallopr 98.7 4.2E-11 1.4E-15 131.6 -14.2 125 488-636 61-190 (278)
156 3lnc_A Guanylate kinase, GMP k 98.7 5.3E-11 1.8E-15 127.1 -13.4 39 489-527 14-53 (231)
157 2zr9_A Protein RECA, recombina 98.6 5.8E-08 2E-12 109.7 9.8 78 622-700 126-237 (349)
158 1ixz_A ATP-dependent metallopr 98.6 6E-11 2.1E-15 128.5 -14.2 124 489-636 38-166 (254)
159 1oix_A RAS-related protein RAB 98.6 6E-09 2E-13 107.5 0.1 37 622-660 152-188 (191)
160 3k1j_A LON protease, ATP-depen 98.6 1.2E-09 4E-14 133.2 -6.2 160 488-660 46-227 (604)
161 3euj_A Chromosome partition pr 98.6 5.6E-09 1.9E-13 121.9 -0.8 52 489-543 17-68 (483)
162 3tr0_A Guanylate kinase, GMP k 98.5 7.4E-09 2.5E-13 107.8 -1.4 66 496-567 1-69 (205)
163 2px0_A Flagellar biosynthesis 98.5 9.4E-08 3.2E-12 105.5 6.6 141 500-698 103-247 (296)
164 1svm_A Large T antigen; AAA+ f 98.4 1.9E-09 6.5E-14 122.6 -10.4 143 489-644 156-312 (377)
165 2f9l_A RAB11B, member RAS onco 98.3 8.5E-07 2.9E-11 91.7 6.9 37 624-662 130-166 (199)
166 2ce7_A Cell division protein F 98.3 8.5E-07 2.9E-11 103.9 7.6 113 490-676 39-165 (476)
167 3hr8_A Protein RECA; alpha and 98.3 4.2E-07 1.4E-11 102.4 4.5 65 491-557 48-115 (356)
168 2qtf_A Protein HFLX, GTP-bindi 98.3 1.1E-06 3.7E-11 99.9 7.8 148 504-663 181-353 (364)
169 1qhl_A Protein (cell division 98.2 4.3E-08 1.5E-12 103.6 -5.8 59 496-557 22-91 (227)
170 4eun_A Thermoresistant glucoki 98.1 1.4E-07 4.8E-12 98.0 -2.2 57 496-558 23-81 (200)
171 2xau_A PRE-mRNA-splicing facto 98.1 2.4E-06 8.1E-11 106.6 6.9 74 615-689 190-265 (773)
172 4a1f_A DNAB helicase, replicat 98.1 3.5E-06 1.2E-10 94.2 7.2 129 490-673 34-164 (338)
173 3nwj_A ATSK2; P loop, shikimat 98.0 7.2E-07 2.5E-11 95.8 0.3 52 463-526 17-72 (250)
174 2dhr_A FTSH; AAA+ protein, hex 98.0 5.3E-08 1.8E-12 114.7 -9.6 130 489-644 53-187 (499)
175 2e87_A Hypothetical protein PH 97.9 1.2E-05 4E-10 91.3 7.5 59 615-675 231-292 (357)
176 2j41_A Guanylate kinase; GMP, 97.9 5.6E-06 1.9E-10 85.9 3.7 30 498-527 2-31 (207)
177 4e22_A Cytidylate kinase; P-lo 97.8 2E-06 6.7E-11 92.8 -0.7 62 491-557 19-95 (252)
178 2dy1_A Elongation factor G; tr 97.8 7.2E-06 2.5E-10 100.6 4.2 132 496-676 3-137 (665)
179 1zu4_A FTSY; GTPase, signal re 97.8 3.6E-06 1.2E-10 93.8 0.9 50 491-542 94-143 (320)
180 3vaa_A Shikimate kinase, SK; s 97.8 7.7E-06 2.6E-10 84.7 3.0 39 488-526 11-49 (199)
181 3a00_A Guanylate kinase, GMP k 97.8 5.8E-06 2E-10 84.6 1.4 26 502-527 1-26 (186)
182 3t34_A Dynamin-related protein 97.7 4E-05 1.4E-09 87.1 8.4 57 616-673 155-212 (360)
183 1jjv_A Dephospho-COA kinase; P 97.7 4.9E-06 1.7E-10 86.5 0.4 71 616-690 60-131 (206)
184 3uie_A Adenylyl-sulfate kinase 97.7 1.1E-05 3.8E-10 83.5 2.0 52 488-542 11-64 (200)
185 3bh0_A DNAB-like replicative h 97.6 4.8E-05 1.7E-09 84.7 6.7 132 489-673 55-189 (315)
186 3kta_A Chromosome segregation 97.6 2.2E-05 7.7E-10 79.7 3.5 36 491-527 14-51 (182)
187 1fnn_A CDC6P, cell division co 97.6 0.0001 3.5E-09 84.1 9.3 44 632-676 124-170 (389)
188 2vp4_A Deoxynucleoside kinase; 97.6 1.1E-05 3.8E-10 85.5 1.1 42 495-542 13-54 (230)
189 3b9p_A CG5977-PA, isoform A; A 97.6 0.00022 7.5E-09 78.4 11.4 72 617-688 97-185 (297)
190 1kgd_A CASK, peripheral plasma 97.6 2.2E-05 7.5E-10 79.9 2.7 36 501-537 4-39 (180)
191 1v5w_A DMC1, meiotic recombina 97.5 0.00056 1.9E-08 76.9 12.4 35 491-525 110-145 (343)
192 3tqc_A Pantothenate kinase; bi 97.5 1.2E-05 4.1E-10 89.3 -1.4 41 487-527 71-117 (321)
193 1ega_A Protein (GTP-binding pr 97.4 0.00012 4.1E-09 80.9 6.2 64 616-687 101-170 (301)
194 3tau_A Guanylate kinase, GMP k 97.4 7E-05 2.4E-09 78.0 3.4 28 500-527 6-33 (208)
195 4ad8_A DNA repair protein RECN 97.3 2E-05 6.9E-10 94.0 -1.3 34 490-524 49-82 (517)
196 2z43_A DNA repair and recombin 97.3 0.00062 2.1E-08 76.0 10.4 35 491-525 95-130 (324)
197 1rz3_A Hypothetical protein rb 97.3 3.1E-05 1.1E-09 80.3 -0.5 42 498-541 18-59 (201)
198 2qt1_A Nicotinamide riboside k 97.3 0.00017 5.7E-09 74.9 4.9 32 495-526 14-45 (207)
199 3ney_A 55 kDa erythrocyte memb 97.2 0.00011 3.8E-09 75.6 2.8 29 499-527 16-44 (197)
200 3kl4_A SRP54, signal recogniti 97.2 0.00036 1.2E-08 80.5 6.9 27 501-527 96-122 (433)
201 3ice_A Transcription terminati 97.1 0.00011 3.7E-09 82.3 1.8 51 463-525 133-197 (422)
202 2z4s_A Chromosomal replication 97.1 0.00039 1.3E-08 81.0 6.6 70 632-702 193-264 (440)
203 3cf0_A Transitional endoplasmi 97.1 0.00026 8.8E-09 78.2 4.6 30 497-526 44-73 (301)
204 1knq_A Gluconate kinase; ALFA/ 97.1 0.0002 6.7E-09 72.1 3.2 36 500-541 6-41 (175)
205 1ypw_A Transitional endoplasmi 97.1 0.00039 1.3E-08 87.2 6.6 31 497-527 233-263 (806)
206 3cr8_A Sulfate adenylyltranfer 97.1 7.5E-05 2.6E-09 89.0 -0.2 43 497-541 364-408 (552)
207 3llm_A ATP-dependent RNA helic 97.1 0.00096 3.3E-08 70.7 8.4 66 617-684 162-228 (235)
208 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00028 9.7E-09 69.3 3.7 30 493-523 15-44 (149)
209 2ffh_A Protein (FFH); SRP54, s 97.0 0.00053 1.8E-08 78.9 6.0 46 493-542 91-136 (425)
210 2qby_A CDC6 homolog 1, cell di 97.0 0.00018 6.3E-09 81.6 1.9 27 500-526 43-69 (386)
211 1kag_A SKI, shikimate kinase I 97.0 0.00023 7.9E-09 71.3 2.4 27 501-527 3-29 (173)
212 2p67_A LAO/AO transport system 96.9 0.00011 3.8E-09 82.7 -0.8 40 488-527 42-81 (341)
213 2q6t_A DNAB replication FORK h 96.8 0.0038 1.3E-07 72.7 10.9 128 490-673 188-318 (444)
214 2gj8_A MNME, tRNA modification 96.8 0.0015 5.1E-08 65.4 6.2 27 500-526 2-28 (172)
215 3m6a_A ATP-dependent protease 96.7 0.00047 1.6E-08 82.6 2.0 49 489-540 96-144 (543)
216 3h4m_A Proteasome-activating n 96.7 0.0023 7.7E-08 69.7 7.2 28 499-526 48-75 (285)
217 3lxx_A GTPase IMAP family memb 96.6 0.009 3.1E-07 63.1 11.6 43 632-674 111-155 (239)
218 1f6b_A SAR1; gtpases, N-termin 96.6 0.00077 2.6E-08 69.2 3.1 36 489-525 13-48 (198)
219 4eaq_A DTMP kinase, thymidylat 96.6 0.00092 3.1E-08 70.6 3.6 36 492-527 13-51 (229)
220 1m2o_B GTP-binding protein SAR 96.6 0.0016 5.6E-08 66.2 5.2 49 490-539 12-66 (190)
221 3bgw_A DNAB-like replicative h 96.5 0.0037 1.3E-07 72.7 8.2 35 490-524 185-219 (444)
222 1mky_A Probable GTP-binding pr 96.5 0.0021 7.1E-08 74.9 6.1 40 503-542 181-230 (439)
223 1l8q_A Chromosomal replication 96.5 0.0054 1.8E-07 68.2 9.0 46 631-676 96-142 (324)
224 3qks_A DNA double-strand break 96.5 0.0014 4.8E-08 67.8 3.7 30 494-524 16-45 (203)
225 1y63_A LMAJ004144AAA protein; 96.4 0.0014 4.8E-08 66.6 3.5 32 494-525 2-33 (184)
226 2pez_A Bifunctional 3'-phospho 96.4 0.0013 4.4E-08 66.4 3.2 27 500-526 3-29 (179)
227 1cke_A CK, MSSA, protein (cyti 96.4 0.0012 4.1E-08 69.2 3.1 56 502-557 5-73 (227)
228 2www_A Methylmalonic aciduria 96.4 0.00052 1.8E-08 77.4 0.2 40 500-541 72-111 (349)
229 1m7g_A Adenylylsulfate kinase; 96.4 0.00055 1.9E-08 71.2 0.1 41 497-539 20-62 (211)
230 1u94_A RECA protein, recombina 96.3 0.045 1.5E-06 61.5 15.5 34 491-524 50-85 (356)
231 2b8t_A Thymidine kinase; deoxy 96.3 0.0022 7.5E-08 67.2 4.3 53 633-690 89-150 (223)
232 2qor_A Guanylate kinase; phosp 96.3 0.0015 5.1E-08 67.5 2.8 30 498-527 8-37 (204)
233 3d8b_A Fidgetin-like protein 1 96.3 0.012 4E-07 66.5 10.3 27 500-526 115-141 (357)
234 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00088 3E-08 74.7 0.9 38 489-526 9-48 (359)
235 3bos_A Putative DNA replicatio 96.3 0.0018 6.3E-08 68.0 3.3 44 632-675 103-148 (242)
236 2qag_A Septin-2, protein NEDD5 96.2 0.00044 1.5E-08 78.4 -2.0 33 488-526 29-61 (361)
237 2wji_A Ferrous iron transport 96.1 0.0062 2.1E-07 60.2 5.9 23 504-526 5-27 (165)
238 2if2_A Dephospho-COA kinase; a 96.0 0.0026 8.8E-08 65.5 2.6 21 504-524 3-23 (204)
239 2ohf_A Protein OLA1, GTP-bindi 95.9 0.0038 1.3E-07 70.9 4.0 45 496-540 16-69 (396)
240 2wjg_A FEOB, ferrous iron tran 95.9 0.0079 2.7E-07 60.5 5.9 22 504-525 9-30 (188)
241 2i1q_A DNA repair and recombin 95.9 0.028 9.7E-07 62.3 10.8 34 491-524 86-120 (322)
242 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.04 1.4E-06 61.1 11.9 28 499-526 42-69 (322)
243 2yvu_A Probable adenylyl-sulfa 95.8 0.0039 1.3E-07 63.1 3.3 29 498-526 9-37 (186)
244 1sxj_C Activator 1 40 kDa subu 95.8 0.0017 5.8E-08 72.8 0.5 38 489-526 31-70 (340)
245 2v1u_A Cell division control p 95.8 0.0072 2.4E-07 68.4 5.8 27 500-526 42-68 (387)
246 1np6_A Molybdopterin-guanine d 95.8 0.0039 1.3E-07 62.8 3.0 38 503-540 7-45 (174)
247 1j8m_F SRP54, signal recogniti 95.8 0.0015 5E-08 71.9 -0.3 46 493-541 89-135 (297)
248 2p5t_B PEZT; postsegregational 95.7 0.0025 8.7E-08 68.3 1.3 45 491-540 22-66 (253)
249 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.018 6.3E-07 61.3 8.0 26 500-525 37-62 (262)
250 3cm0_A Adenylate kinase; ATP-b 95.7 0.0052 1.8E-07 62.0 3.4 25 500-524 2-26 (186)
251 1q57_A DNA primase/helicase; d 95.6 0.097 3.3E-06 61.8 14.6 35 490-524 230-264 (503)
252 3t61_A Gluconokinase; PSI-biol 95.6 0.0043 1.5E-07 63.8 2.4 25 502-526 18-42 (202)
253 3auy_A DNA double-strand break 95.5 0.008 2.7E-07 68.2 4.6 31 492-523 16-46 (371)
254 1lv7_A FTSH; alpha/beta domain 95.5 0.0054 1.9E-07 65.6 3.0 34 491-526 36-69 (257)
255 1qhx_A CPT, protein (chloramph 95.5 0.0069 2.4E-07 60.6 3.4 26 502-527 3-28 (178)
256 3kb2_A SPBC2 prophage-derived 95.4 0.0068 2.3E-07 60.1 3.2 23 504-526 3-25 (173)
257 1q3t_A Cytidylate kinase; nucl 95.3 0.0075 2.6E-07 63.7 3.1 27 499-525 13-39 (236)
258 3r20_A Cytidylate kinase; stru 95.3 0.0081 2.8E-07 63.3 3.2 24 502-525 9-32 (233)
259 2zej_A Dardarin, leucine-rich 95.2 0.008 2.7E-07 60.5 3.0 23 504-526 4-26 (184)
260 1xp8_A RECA protein, recombina 95.2 0.096 3.3E-06 59.0 12.0 34 491-524 61-96 (366)
261 2rhm_A Putative kinase; P-loop 95.1 0.01 3.5E-07 60.1 3.4 25 500-524 3-27 (193)
262 3cmw_A Protein RECA, recombina 95.1 0.071 2.4E-06 70.7 11.9 35 491-525 719-755 (1706)
263 1ex7_A Guanylate kinase; subst 95.0 0.01 3.4E-07 60.4 3.0 23 504-526 3-25 (186)
264 1kht_A Adenylate kinase; phosp 95.0 0.011 3.7E-07 59.8 3.2 24 502-525 3-26 (192)
265 3iij_A Coilin-interacting nucl 95.0 0.0095 3.2E-07 59.9 2.7 25 500-524 9-33 (180)
266 3io5_A Recombination and repai 94.9 0.036 1.2E-06 60.7 7.1 25 497-522 24-48 (333)
267 1xx6_A Thymidine kinase; NESG, 94.9 0.015 5.2E-07 59.3 3.9 53 633-690 81-142 (191)
268 3trf_A Shikimate kinase, SK; a 94.8 0.013 4.5E-07 59.0 3.3 25 501-525 4-28 (185)
269 2ze6_A Isopentenyl transferase 94.8 0.012 4.1E-07 63.0 3.0 24 503-526 2-25 (253)
270 3lw7_A Adenylate kinase relate 94.7 0.014 4.8E-07 57.7 3.1 19 504-522 3-21 (179)
271 1vht_A Dephospho-COA kinase; s 94.7 0.016 5.5E-07 60.2 3.6 24 501-524 3-26 (218)
272 4b4t_J 26S protease regulatory 94.6 0.11 3.7E-06 58.9 10.4 28 499-526 179-206 (405)
273 2v54_A DTMP kinase, thymidylat 94.6 0.017 5.8E-07 59.1 3.4 26 501-526 3-28 (204)
274 1gvn_B Zeta; postsegregational 94.6 0.016 5.5E-07 63.2 3.4 37 499-539 30-66 (287)
275 2jaq_A Deoxyguanosine kinase; 94.6 0.016 5.4E-07 59.2 3.2 23 504-526 2-24 (205)
276 2bwj_A Adenylate kinase 5; pho 94.6 0.01 3.5E-07 60.5 1.6 29 497-525 7-35 (199)
277 2qp9_X Vacuolar protein sortin 94.5 0.069 2.3E-06 60.1 8.6 28 499-526 81-108 (355)
278 2plr_A DTMP kinase, probable t 94.5 0.019 6.5E-07 59.0 3.6 26 501-526 3-28 (213)
279 2wwf_A Thymidilate kinase, put 94.5 0.018 6.2E-07 59.3 3.3 26 500-525 8-33 (212)
280 4b4t_L 26S protease subunit RP 94.4 0.15 5.2E-06 58.6 11.1 28 499-526 212-239 (437)
281 2c95_A Adenylate kinase 1; tra 94.4 0.019 6.4E-07 58.3 3.2 26 500-525 7-32 (196)
282 1ly1_A Polynucleotide kinase; 94.4 0.02 6.9E-07 57.1 3.4 22 503-524 3-24 (181)
283 3vfd_A Spastin; ATPase, microt 94.3 0.17 5.7E-06 57.6 11.2 27 500-526 146-172 (389)
284 1via_A Shikimate kinase; struc 94.3 0.019 6.6E-07 57.3 2.9 23 504-526 6-28 (175)
285 1uf9_A TT1252 protein; P-loop, 94.3 0.022 7.4E-07 58.2 3.4 24 502-525 8-31 (203)
286 1nn5_A Similar to deoxythymidy 94.2 0.021 7.3E-07 58.8 3.2 26 500-525 7-32 (215)
287 1gtv_A TMK, thymidylate kinase 94.2 0.011 3.6E-07 61.2 0.8 24 504-527 2-25 (214)
288 1xjc_A MOBB protein homolog; s 94.2 0.021 7.2E-07 57.0 2.8 22 504-525 6-27 (169)
289 3k53_A Ferrous iron transport 94.1 0.022 7.4E-07 61.5 3.0 23 504-526 5-27 (271)
290 1nks_A Adenylate kinase; therm 94.0 0.023 8E-07 57.3 2.9 23 504-526 3-25 (194)
291 1tev_A UMP-CMP kinase; ploop, 94.0 0.027 9.4E-07 56.9 3.4 23 502-524 3-25 (196)
292 1ko7_A HPR kinase/phosphatase; 93.8 0.03 1E-06 61.4 3.4 36 489-525 132-167 (314)
293 3ihw_A Centg3; RAS, centaurin, 93.7 0.043 1.5E-06 55.2 4.3 21 504-524 22-42 (184)
294 1aky_A Adenylate kinase; ATP:A 93.7 0.031 1.1E-06 58.1 3.4 26 500-525 2-27 (220)
295 2z0h_A DTMP kinase, thymidylat 93.7 0.032 1.1E-06 56.6 3.2 23 504-526 2-24 (197)
296 2vli_A Antibiotic resistance p 93.6 0.024 8.4E-07 56.8 2.3 25 501-525 4-28 (183)
297 3q72_A GTP-binding protein RAD 93.6 0.03 1E-06 54.8 2.7 23 504-526 4-26 (166)
298 1jal_A YCHF protein; nucleotid 93.6 0.032 1.1E-06 62.6 3.3 38 502-539 2-48 (363)
299 2nzj_A GTP-binding protein REM 93.5 0.035 1.2E-06 54.7 3.1 23 504-526 6-28 (175)
300 2ged_A SR-beta, signal recogni 93.4 0.033 1.1E-06 56.2 2.8 24 503-526 49-72 (193)
301 3b1v_A Ferrous iron uptake tra 93.4 0.036 1.2E-06 59.9 3.3 23 504-526 5-27 (272)
302 3ake_A Cytidylate kinase; CMP 93.4 0.033 1.1E-06 57.0 2.9 23 504-526 4-26 (208)
303 1z2a_A RAS-related protein RAB 93.4 0.032 1.1E-06 54.5 2.6 22 504-525 7-28 (168)
304 2erx_A GTP-binding protein DI- 93.4 0.037 1.3E-06 54.2 3.1 22 504-525 5-26 (172)
305 1zd8_A GTP:AMP phosphotransfer 93.4 0.035 1.2E-06 58.0 3.0 26 500-525 5-30 (227)
306 2j9r_A Thymidine kinase; TK1, 93.3 0.15 5.3E-06 52.5 7.6 53 633-690 101-162 (214)
307 3fb4_A Adenylate kinase; psych 93.3 0.039 1.3E-06 57.0 3.2 21 504-524 2-22 (216)
308 3q85_A GTP-binding protein REM 93.3 0.04 1.4E-06 54.0 3.1 23 504-526 4-26 (169)
309 1fzq_A ADP-ribosylation factor 93.3 0.035 1.2E-06 55.6 2.7 24 503-526 17-40 (181)
310 2cdn_A Adenylate kinase; phosp 93.3 0.043 1.5E-06 56.1 3.5 25 501-525 19-43 (201)
311 1ukz_A Uridylate kinase; trans 93.3 0.046 1.6E-06 55.9 3.6 25 501-525 14-38 (203)
312 3lxw_A GTPase IMAP family memb 93.2 0.039 1.3E-06 58.7 3.1 23 504-526 23-45 (247)
313 4ag6_A VIRB4 ATPase, type IV s 93.2 0.034 1.2E-06 63.5 2.8 44 633-676 262-308 (392)
314 3tw8_B RAS-related protein RAB 93.2 0.039 1.3E-06 54.6 2.9 22 504-525 11-32 (181)
315 1zuh_A Shikimate kinase; alpha 93.2 0.044 1.5E-06 54.2 3.2 23 503-525 8-30 (168)
316 2dyk_A GTP-binding protein; GT 93.2 0.037 1.3E-06 53.7 2.6 23 504-526 3-25 (161)
317 1kao_A RAP2A; GTP-binding prot 93.1 0.037 1.3E-06 53.8 2.6 22 504-525 5-26 (167)
318 2lkc_A Translation initiation 93.1 0.049 1.7E-06 53.8 3.5 25 501-525 7-31 (178)
319 2pbr_A DTMP kinase, thymidylat 93.1 0.044 1.5E-06 55.3 3.2 22 504-525 2-23 (195)
320 2ce2_X GTPase HRAS; signaling 93.1 0.035 1.2E-06 53.8 2.4 22 504-525 5-26 (166)
321 1u8z_A RAS-related protein RAL 93.1 0.038 1.3E-06 53.8 2.6 22 504-525 6-27 (168)
322 1zak_A Adenylate kinase; ATP:A 93.0 0.038 1.3E-06 57.5 2.6 25 501-525 4-28 (222)
323 3dl0_A Adenylate kinase; phosp 93.0 0.045 1.5E-06 56.6 3.2 22 504-525 2-23 (216)
324 1e6c_A Shikimate kinase; phosp 93.0 0.039 1.3E-06 54.6 2.6 22 504-525 4-25 (173)
325 1svi_A GTP-binding protein YSX 93.0 0.04 1.4E-06 55.5 2.7 24 503-526 24-47 (195)
326 3cmu_A Protein RECA, recombina 93.0 0.24 8.1E-06 66.7 10.6 34 491-524 370-405 (2050)
327 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.05 1.7E-06 58.3 3.6 25 501-525 3-27 (260)
328 1z0j_A RAB-22, RAS-related pro 93.0 0.04 1.4E-06 53.9 2.6 23 504-526 8-30 (170)
329 1z08_A RAS-related protein RAB 93.0 0.04 1.4E-06 53.9 2.6 22 504-525 8-29 (170)
330 4fcw_A Chaperone protein CLPB; 93.0 0.02 6.9E-07 62.8 0.4 25 502-526 47-71 (311)
331 2pt5_A Shikimate kinase, SK; a 92.9 0.049 1.7E-06 53.7 3.2 22 504-525 2-23 (168)
332 3tlx_A Adenylate kinase 2; str 92.9 0.053 1.8E-06 57.5 3.6 25 500-524 27-51 (243)
333 1ek0_A Protein (GTP-binding pr 92.9 0.042 1.4E-06 53.7 2.6 23 504-526 5-27 (170)
334 1g16_A RAS-related protein SEC 92.9 0.039 1.3E-06 54.0 2.4 23 504-526 5-27 (170)
335 1c1y_A RAS-related protein RAP 92.9 0.042 1.4E-06 53.6 2.6 22 504-525 5-26 (167)
336 2orv_A Thymidine kinase; TP4A 92.9 0.22 7.5E-06 51.9 8.0 53 632-690 89-150 (234)
337 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.042 1.4E-06 54.3 2.6 23 504-526 9-31 (177)
338 1a7j_A Phosphoribulokinase; tr 92.9 0.032 1.1E-06 60.9 1.8 24 501-524 4-27 (290)
339 2iyv_A Shikimate kinase, SK; t 92.8 0.041 1.4E-06 55.3 2.5 23 503-525 3-25 (184)
340 1qf9_A UMP/CMP kinase, protein 92.8 0.051 1.8E-06 54.7 3.2 23 502-524 6-28 (194)
341 2grj_A Dephospho-COA kinase; T 92.8 0.052 1.8E-06 55.4 3.2 24 501-524 11-34 (192)
342 3pqc_A Probable GTP-binding pr 92.8 0.048 1.6E-06 54.8 3.0 23 504-526 25-47 (195)
343 1ky3_A GTP-binding protein YPT 92.8 0.044 1.5E-06 54.3 2.6 23 504-526 10-32 (182)
344 3a8t_A Adenylate isopentenyltr 92.8 0.086 2.9E-06 58.3 5.1 27 501-527 39-65 (339)
345 2cxx_A Probable GTP-binding pr 92.8 0.047 1.6E-06 54.7 2.8 23 504-526 3-25 (190)
346 3cmw_A Protein RECA, recombina 92.7 0.85 2.9E-05 60.7 15.1 35 490-524 369-405 (1706)
347 2qmh_A HPR kinase/phosphorylas 92.7 0.07 2.4E-06 54.4 3.9 36 490-526 23-58 (205)
348 2fn4_A P23, RAS-related protei 92.7 0.043 1.5E-06 54.3 2.4 22 504-525 11-32 (181)
349 1wf3_A GTP-binding protein; GT 92.6 0.056 1.9E-06 59.3 3.3 26 500-526 6-31 (301)
350 1r2q_A RAS-related protein RAB 92.6 0.05 1.7E-06 53.1 2.6 22 504-525 8-29 (170)
351 2hxs_A RAB-26, RAS-related pro 92.5 0.055 1.9E-06 53.5 2.9 22 504-525 8-29 (178)
352 1uj2_A Uridine-cytidine kinase 92.5 0.057 1.9E-06 57.5 3.2 23 503-525 23-45 (252)
353 4dsu_A GTPase KRAS, isoform 2B 92.5 0.051 1.7E-06 54.3 2.6 23 504-526 6-28 (189)
354 2oil_A CATX-8, RAS-related pro 92.5 0.051 1.7E-06 54.8 2.6 22 504-525 27-48 (193)
355 3iby_A Ferrous iron transport 92.5 0.057 1.9E-06 57.8 3.1 23 504-526 3-25 (256)
356 3t5d_A Septin-7; GTP-binding p 92.5 0.05 1.7E-06 58.7 2.7 22 504-525 10-31 (274)
357 1r8s_A ADP-ribosylation factor 92.4 0.054 1.8E-06 52.7 2.6 21 504-524 2-22 (164)
358 3t1o_A Gliding protein MGLA; G 92.4 0.059 2E-06 54.2 3.0 24 504-527 16-39 (198)
359 3cbq_A GTP-binding protein REM 92.4 0.053 1.8E-06 55.1 2.6 22 504-525 25-46 (195)
360 3clv_A RAB5 protein, putative; 92.4 0.053 1.8E-06 54.7 2.6 22 504-525 9-30 (208)
361 3umf_A Adenylate kinase; rossm 92.4 0.07 2.4E-06 55.5 3.5 28 498-525 25-52 (217)
362 3bc1_A RAS-related protein RAB 92.4 0.054 1.8E-06 54.2 2.6 22 504-525 13-34 (195)
363 1njg_A DNA polymerase III subu 92.3 0.032 1.1E-06 58.0 0.9 43 632-676 125-167 (250)
364 1moz_A ARL1, ADP-ribosylation 92.3 0.057 2E-06 53.7 2.7 24 501-524 17-40 (183)
365 3iev_A GTP-binding protein ERA 92.3 0.065 2.2E-06 59.0 3.3 23 504-526 12-34 (308)
366 2g6b_A RAS-related protein RAB 92.2 0.058 2E-06 53.4 2.6 23 504-526 12-34 (180)
367 2dby_A GTP-binding protein; GD 92.2 0.053 1.8E-06 61.2 2.5 21 505-525 4-24 (368)
368 2y8e_A RAB-protein 6, GH09086P 92.2 0.055 1.9E-06 53.4 2.4 22 504-525 16-37 (179)
369 3dm5_A SRP54, signal recogniti 92.1 0.66 2.2E-05 53.3 11.5 26 501-526 99-124 (443)
370 1z0f_A RAB14, member RAS oncog 92.1 0.061 2.1E-06 53.1 2.6 23 504-526 17-39 (179)
371 2a9k_A RAS-related protein RAL 92.1 0.061 2.1E-06 53.5 2.6 22 504-525 20-41 (187)
372 3con_A GTPase NRAS; structural 92.1 0.061 2.1E-06 54.0 2.6 23 504-526 23-45 (190)
373 1ksh_A ARF-like protein 2; sma 92.1 0.07 2.4E-06 53.3 3.0 26 501-526 17-42 (186)
374 3v9p_A DTMP kinase, thymidylat 92.1 0.062 2.1E-06 56.3 2.7 28 499-526 22-49 (227)
375 1jbk_A CLPB protein; beta barr 92.1 0.079 2.7E-06 52.8 3.4 27 500-526 41-67 (195)
376 3be4_A Adenylate kinase; malar 92.0 0.07 2.4E-06 55.3 3.1 25 501-525 4-28 (217)
377 1upt_A ARL1, ADP-ribosylation 92.0 0.081 2.8E-06 51.8 3.3 23 503-525 8-30 (171)
378 2xb4_A Adenylate kinase; ATP-b 92.0 0.074 2.5E-06 55.4 3.2 21 504-524 2-22 (223)
379 2efe_B Small GTP-binding prote 92.0 0.064 2.2E-06 53.1 2.6 22 504-525 14-35 (181)
380 2f6r_A COA synthase, bifunctio 91.9 0.076 2.6E-06 57.6 3.4 22 502-523 75-96 (281)
381 4edh_A DTMP kinase, thymidylat 91.9 0.086 3E-06 54.7 3.6 27 500-526 4-30 (213)
382 2xtp_A GTPase IMAP family memb 91.9 0.072 2.5E-06 56.8 3.0 23 504-526 24-46 (260)
383 2gf9_A RAS-related protein RAB 91.9 0.067 2.3E-06 53.7 2.6 23 504-526 24-46 (189)
384 3a1s_A Iron(II) transport prot 91.9 0.079 2.7E-06 56.7 3.3 23 504-526 7-29 (258)
385 3gfo_A Cobalt import ATP-bindi 91.8 0.088 3E-06 56.9 3.7 48 2-53 184-232 (275)
386 2bme_A RAB4A, RAS-related prot 91.8 0.063 2.2E-06 53.5 2.4 22 504-525 12-33 (186)
387 2il1_A RAB12; G-protein, GDP, 91.8 0.074 2.5E-06 53.7 2.9 23 504-526 28-50 (192)
388 1nrj_B SR-beta, signal recogni 91.8 0.072 2.5E-06 54.9 2.9 23 504-526 14-36 (218)
389 2r8r_A Sensor protein; KDPD, P 91.8 0.054 1.9E-06 56.4 1.8 45 629-673 80-125 (228)
390 2bov_A RAla, RAS-related prote 91.8 0.069 2.3E-06 54.2 2.6 22 504-525 16-37 (206)
391 1vg8_A RAS-related protein RAB 91.8 0.069 2.4E-06 54.3 2.6 23 504-526 10-32 (207)
392 3i8s_A Ferrous iron transport 91.7 0.077 2.6E-06 57.3 3.1 23 504-526 5-27 (274)
393 1zbd_A Rabphilin-3A; G protein 91.7 0.081 2.8E-06 53.7 3.1 23 504-526 10-32 (203)
394 1m7b_A RND3/RHOE small GTP-bin 91.7 0.067 2.3E-06 53.5 2.4 22 504-525 9-30 (184)
395 3bwd_D RAC-like GTP-binding pr 91.7 0.084 2.9E-06 52.3 3.1 23 504-526 10-32 (182)
396 3tkl_A RAS-related protein RAB 91.7 0.072 2.5E-06 53.6 2.6 22 504-525 18-39 (196)
397 2cjw_A GTP-binding protein GEM 91.7 0.072 2.5E-06 53.9 2.6 21 504-524 8-28 (192)
398 2fg5_A RAB-22B, RAS-related pr 91.7 0.067 2.3E-06 54.0 2.4 23 504-526 25-47 (192)
399 2h57_A ADP-ribosylation factor 91.6 0.068 2.3E-06 53.7 2.4 23 504-526 23-45 (190)
400 2f7s_A C25KG, RAS-related prot 91.6 0.16 5.3E-06 52.2 5.2 23 504-526 27-49 (217)
401 3kkq_A RAS-related protein M-R 91.6 0.074 2.5E-06 52.9 2.6 22 504-525 20-41 (183)
402 2w58_A DNAI, primosome compone 91.6 0.093 3.2E-06 53.5 3.4 23 503-525 55-77 (202)
403 2gf0_A GTP-binding protein DI- 91.6 0.068 2.3E-06 53.9 2.4 22 504-525 10-31 (199)
404 1e4v_A Adenylate kinase; trans 91.6 0.082 2.8E-06 54.6 3.0 21 504-524 2-22 (214)
405 1mh1_A RAC1; GTP-binding, GTPa 91.5 0.077 2.6E-06 52.8 2.6 22 504-525 7-28 (186)
406 2o52_A RAS-related protein RAB 91.5 0.083 2.8E-06 53.8 2.9 22 504-525 27-48 (200)
407 2qu8_A Putative nucleolar GTP- 91.5 0.093 3.2E-06 54.7 3.3 23 504-526 31-53 (228)
408 4dhe_A Probable GTP-binding pr 91.4 0.051 1.7E-06 56.2 1.2 23 504-526 31-53 (223)
409 1z06_A RAS-related protein RAB 91.4 0.079 2.7E-06 53.2 2.6 22 504-525 22-43 (189)
410 1zj6_A ADP-ribosylation factor 91.4 0.086 2.9E-06 52.8 2.9 26 501-526 15-40 (187)
411 3oes_A GTPase rhebl1; small GT 91.4 0.074 2.5E-06 54.1 2.4 23 504-526 26-48 (201)
412 4bas_A ADP-ribosylation factor 91.4 0.089 3E-06 53.1 2.9 23 504-526 19-41 (199)
413 3d3q_A TRNA delta(2)-isopenten 91.4 0.092 3.2E-06 58.3 3.2 24 503-526 8-31 (340)
414 1ak2_A Adenylate kinase isoenz 91.3 0.1 3.5E-06 54.8 3.4 25 501-525 15-39 (233)
415 2wsm_A Hydrogenase expression/ 91.3 0.08 2.7E-06 54.7 2.6 23 503-525 31-53 (221)
416 1sxj_D Activator 1 41 kDa subu 91.3 0.055 1.9E-06 60.4 1.4 42 633-676 133-174 (353)
417 3dz8_A RAS-related protein RAB 91.3 0.077 2.6E-06 53.4 2.4 23 504-526 25-47 (191)
418 2h17_A ADP-ribosylation factor 91.3 0.079 2.7E-06 52.8 2.5 23 504-526 23-45 (181)
419 2a5j_A RAS-related protein RAB 91.3 0.084 2.9E-06 53.2 2.6 23 504-526 23-45 (191)
420 3lv8_A DTMP kinase, thymidylat 91.3 0.098 3.3E-06 55.2 3.2 26 501-526 26-51 (236)
421 3exa_A TRNA delta(2)-isopenten 91.2 0.11 3.7E-06 56.9 3.5 26 502-527 3-28 (322)
422 3t5g_A GTP-binding protein RHE 91.2 0.081 2.8E-06 52.5 2.4 21 504-524 8-28 (181)
423 1ltq_A Polynucleotide kinase; 91.2 0.1 3.4E-06 57.0 3.4 22 503-524 3-24 (301)
424 1zd9_A ADP-ribosylation factor 91.2 0.086 2.9E-06 53.0 2.6 22 504-525 24-45 (188)
425 1sky_E F1-ATPase, F1-ATP synth 91.2 0.094 3.2E-06 60.6 3.2 34 491-525 141-174 (473)
426 2ew1_A RAS-related protein RAB 91.2 0.08 2.7E-06 54.1 2.4 22 504-525 28-49 (201)
427 1jwy_B Dynamin A GTPase domain 91.2 0.092 3.1E-06 57.7 3.0 23 504-526 26-48 (315)
428 3zvl_A Bifunctional polynucleo 91.1 0.11 3.8E-06 59.7 3.8 27 499-525 255-281 (416)
429 2bcg_Y Protein YP2, GTP-bindin 91.1 0.082 2.8E-06 53.9 2.4 22 504-525 10-31 (206)
430 2fv8_A H6, RHO-related GTP-bin 91.1 0.087 3E-06 53.9 2.6 35 492-526 15-49 (207)
431 2atv_A RERG, RAS-like estrogen 91.1 0.088 3E-06 53.2 2.6 22 504-525 30-51 (196)
432 3reg_A RHO-like small GTPase; 91.1 0.089 3.1E-06 53.0 2.6 22 504-525 25-46 (194)
433 1x3s_A RAS-related protein RAB 91.0 0.092 3.1E-06 52.7 2.6 22 504-525 17-38 (195)
434 2p5s_A RAS and EF-hand domain 91.0 0.092 3.1E-06 53.3 2.6 23 504-526 30-52 (199)
435 3ld9_A DTMP kinase, thymidylat 91.0 0.12 4.2E-06 53.8 3.6 27 500-526 19-45 (223)
436 3cph_A RAS-related protein SEC 91.0 0.093 3.2E-06 53.6 2.6 23 503-525 21-43 (213)
437 2p65_A Hypothetical protein PF 91.0 0.091 3.1E-06 52.2 2.5 27 500-526 41-67 (187)
438 3tmk_A Thymidylate kinase; pho 90.9 0.11 3.8E-06 54.0 3.1 28 500-527 3-30 (216)
439 3tqf_A HPR(Ser) kinase; transf 90.9 0.14 4.8E-06 50.9 3.6 33 491-524 6-38 (181)
440 2q3h_A RAS homolog gene family 90.9 0.11 3.8E-06 52.6 3.1 22 504-525 22-43 (201)
441 2r62_A Cell division protease 90.9 0.05 1.7E-06 58.3 0.5 32 492-525 36-67 (268)
442 3llu_A RAS-related GTP-binding 90.8 0.11 3.6E-06 52.7 2.9 24 504-527 22-45 (196)
443 2b6h_A ADP-ribosylation factor 90.8 0.1 3.5E-06 52.8 2.7 25 501-525 28-52 (192)
444 2j1l_A RHO-related GTP-binding 90.8 0.1 3.6E-06 53.7 2.8 22 504-525 36-57 (214)
445 2aka_B Dynamin-1; fusion prote 90.7 0.099 3.4E-06 56.8 2.7 23 504-526 28-50 (299)
446 1gwn_A RHO-related GTP-binding 90.7 0.094 3.2E-06 53.8 2.4 22 504-525 30-51 (205)
447 4tmk_A Protein (thymidylate ki 90.7 0.12 4E-06 53.6 3.1 26 501-526 2-27 (213)
448 3c5c_A RAS-like protein 12; GD 90.7 0.1 3.5E-06 52.4 2.6 22 504-525 23-44 (187)
449 1p5z_B DCK, deoxycytidine kina 90.7 0.097 3.3E-06 56.0 2.5 27 500-526 22-48 (263)
450 2iwr_A Centaurin gamma 1; ANK 90.6 0.079 2.7E-06 52.4 1.7 22 504-525 9-30 (178)
451 2fu5_C RAS-related protein RAB 90.6 0.077 2.7E-06 52.8 1.6 22 504-525 10-31 (183)
452 3cmu_A Protein RECA, recombina 90.6 0.35 1.2E-05 65.1 8.1 35 491-525 719-755 (2050)
453 3def_A T7I23.11 protein; chlor 90.6 0.12 4E-06 55.4 3.1 23 504-526 38-60 (262)
454 3crm_A TRNA delta(2)-isopenten 90.6 0.12 4.1E-06 56.9 3.2 24 503-526 6-29 (323)
455 3cnl_A YLQF, putative uncharac 90.5 0.14 4.6E-06 55.0 3.5 25 503-527 100-124 (262)
456 2g3y_A GTP-binding protein GEM 90.5 0.12 4.3E-06 53.3 3.1 22 504-525 39-60 (211)
457 2ocp_A DGK, deoxyguanosine kin 90.4 0.13 4.6E-06 54.1 3.3 25 502-526 2-26 (241)
458 2fh5_B SR-beta, signal recogni 90.4 0.12 4.1E-06 53.0 2.9 22 504-525 9-30 (214)
459 1h65_A Chloroplast outer envel 90.4 0.13 4.3E-06 55.4 3.1 23 504-526 41-63 (270)
460 2gco_A H9, RHO-related GTP-bin 90.3 0.11 3.7E-06 52.9 2.4 22 504-525 27-48 (201)
461 4djt_A GTP-binding nuclear pro 90.3 0.074 2.5E-06 54.8 1.2 23 504-526 13-35 (218)
462 1ypw_A Transitional endoplasmi 90.3 0.068 2.3E-06 66.8 1.0 33 494-526 503-535 (806)
463 1g6h_A High-affinity branched- 90.3 0.16 5.3E-06 54.3 3.7 46 2-51 194-239 (257)
464 3sr0_A Adenylate kinase; phosp 90.3 0.14 4.8E-06 52.7 3.2 22 504-525 2-23 (206)
465 3foz_A TRNA delta(2)-isopenten 90.1 0.16 5.5E-06 55.4 3.6 25 502-526 10-34 (316)
466 2h92_A Cytidylate kinase; ross 90.1 0.13 4.3E-06 53.2 2.7 25 502-526 3-27 (219)
467 2x77_A ADP-ribosylation factor 90.0 0.1 3.6E-06 52.2 2.0 25 501-525 21-45 (189)
468 1b0u_A Histidine permease; ABC 90.0 0.13 4.4E-06 55.2 2.7 48 2-53 194-241 (262)
469 2atx_A Small GTP binding prote 89.9 0.12 4.2E-06 51.9 2.4 22 504-525 20-41 (194)
470 3euj_A Chromosome partition pr 89.8 0.41 1.4E-05 55.7 6.9 70 614-690 378-464 (483)
471 2zts_A Putative uncharacterize 89.8 0.19 6.6E-06 52.7 3.9 60 631-690 133-206 (251)
472 4dcu_A GTP-binding protein ENG 89.7 0.13 4.5E-06 59.8 2.8 54 619-676 88-142 (456)
473 2yc2_C IFT27, small RAB-relate 89.6 0.08 2.7E-06 53.8 0.7 22 504-525 22-43 (208)
474 2hf9_A Probable hydrogenase ni 89.6 0.14 4.9E-06 53.0 2.6 23 503-525 39-61 (226)
475 3n70_A Transport activator; si 89.4 0.16 5.6E-06 48.8 2.8 42 633-676 76-117 (145)
476 1ji0_A ABC transporter; ATP bi 89.4 0.13 4.5E-06 54.3 2.2 47 2-52 180-226 (240)
477 3eph_A TRNA isopentenyltransfe 89.4 0.17 5.9E-06 57.2 3.3 24 503-526 3-26 (409)
478 2onk_A Molybdate/tungstate ABC 89.4 0.16 5.4E-06 53.7 2.8 48 2-53 167-215 (240)
479 2vhj_A Ntpase P4, P4; non- hyd 89.4 0.19 6.4E-06 55.2 3.4 28 497-524 118-145 (331)
480 2hup_A RAS-related protein RAB 89.3 0.14 4.9E-06 52.1 2.4 23 504-526 31-53 (201)
481 3cpj_B GTP-binding protein YPT 89.3 0.15 5.2E-06 52.8 2.6 23 504-526 15-37 (223)
482 4a9a_A Ribosome-interacting GT 89.1 0.3 1E-05 55.1 5.0 39 504-542 74-121 (376)
483 4gzl_A RAS-related C3 botulinu 89.1 0.15 5.3E-06 51.9 2.4 21 504-524 32-52 (204)
484 3q3j_B RHO-related GTP-binding 88.8 0.17 6E-06 52.0 2.6 22 504-525 29-50 (214)
485 3tui_C Methionine import ATP-b 88.8 0.16 5.4E-06 57.0 2.4 48 2-53 204-252 (366)
486 2olj_A Amino acid ABC transpor 88.8 0.18 6.3E-06 54.0 2.8 48 2-53 200-247 (263)
487 1vpl_A ABC transporter, ATP-bi 88.8 0.17 5.8E-06 54.0 2.6 49 2-54 187-235 (256)
488 2j0v_A RAC-like GTP-binding pr 88.6 0.17 5.9E-06 51.7 2.4 22 504-525 11-32 (212)
489 2zu0_C Probable ATP-dependent 88.4 0.22 7.6E-06 53.5 3.2 57 2-63 205-262 (267)
490 4g1u_C Hemin import ATP-bindin 88.4 0.16 5.5E-06 54.6 2.0 47 2-52 188-235 (266)
491 1puj_A YLQF, conserved hypothe 88.4 0.24 8.3E-06 53.6 3.5 26 501-526 119-144 (282)
492 3r7w_A Gtpase1, GTP-binding pr 88.3 0.25 8.6E-06 54.2 3.6 24 502-525 3-26 (307)
493 2orw_A Thymidine kinase; TMTK, 88.1 0.25 8.5E-06 49.8 3.2 53 633-690 76-137 (184)
494 3gmt_A Adenylate kinase; ssgci 88.1 0.23 7.8E-06 52.0 2.9 23 503-525 9-31 (230)
495 3syl_A Protein CBBX; photosynt 88.1 0.23 8E-06 54.1 3.2 26 500-525 65-90 (309)
496 1lw7_A Transcriptional regulat 88.0 0.25 8.4E-06 55.7 3.4 29 615-643 296-329 (365)
497 1d2n_A N-ethylmaleimide-sensit 87.9 0.27 9.3E-06 52.6 3.5 26 500-525 62-87 (272)
498 3p32_A Probable GTPase RV1496/ 87.9 0.19 6.4E-06 56.5 2.3 26 500-525 77-102 (355)
499 3l0i_B RAS-related protein RAB 87.7 0.084 2.9E-06 53.6 -0.6 23 504-526 35-57 (199)
500 2yz2_A Putative ABC transporte 87.6 0.3 1E-05 52.4 3.6 49 2-54 179-227 (266)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-44 Score=388.74 Aligned_cols=221 Identities=23% Similarity=0.347 Sum_probs=187.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++... ..++++|+|||+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 5788999877421 113569999999999999999999999999999999999987 57999999999864
Q ss_pred ccc-------ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCC
Q 043954 544 QKT-------FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIPGQSG 615 (1045)
Q Consensus 544 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 615 (1045)
... .++.+|||+|++.+++.+||+||+.++...+.......++..+++.++++.+++.+. .++.++ +
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----Q 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----G
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh-----h
Confidence 321 134589999999999999999999997654422234556666778999999999875 377664 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |+|+|++||+++ +.+.||++++|+ +|+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~-~G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLK-DGE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 568999999998 599
Q ss_pred EEEecCCCc
Q 043954 695 IIYSGMLGR 703 (1045)
Q Consensus 695 ~~~~G~~~~ 703 (1045)
++..++.++
T Consensus 223 i~~~~~~~~ 231 (235)
T 3tif_A 223 VEREEKLRG 231 (235)
T ss_dssp EEEEEECC-
T ss_pred EEEEcChhh
Confidence 999988753
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=8.1e-45 Score=409.13 Aligned_cols=219 Identities=24% Similarity=0.318 Sum_probs=192.8
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++... .++.++|+||||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 58899999987521 123579999999999999999999999999999999999987 5799999999987
Q ss_pred Ccc------cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 043954 543 VQK------TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 543 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 616 (1045)
... ..++.+|||+|++.+++.+||+||+.++...+ ..++++.+++++++++.+||.+..++.++ +|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hC
Confidence 532 23567999999999999999999999987654 23566677789999999999988888874 79
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||||||||+|||||+.+|++|||||||||||+.++..++++|++++++ |.|||++||+++ .+.+.||++++|+ +|++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~-~G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 999999999976 5778899999998 5999
Q ss_pred EEecCCC
Q 043954 696 IYSGMLG 702 (1045)
Q Consensus 696 ~~~G~~~ 702 (1045)
++.|+++
T Consensus 243 v~~g~~~ 249 (366)
T 3tui_C 243 IEQDTVS 249 (366)
T ss_dssp EECCBHH
T ss_pred EEEcCHH
Confidence 9999864
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2e-44 Score=408.62 Aligned_cols=216 Identities=25% Similarity=0.395 Sum_probs=192.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++ +++++|+|||+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|++.
T Consensus 3 ~l~~~~l~~~y-------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEE-------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 36789999876 24679999999999999999999999999999999999988 5799999999987
Q ss_pred Ccc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
... ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.++|.+..++.++ +||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHH
Confidence 542 23467999999999999999999999987654 24566677889999999999998888874 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |.|+|++||++. ++..+||++++|+ +|+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~-~G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEEeC
Confidence 9999999999999999999999999999999999999999765 999999999986 6889999999998 599999998
Q ss_pred CCc
Q 043954 701 LGR 703 (1045)
Q Consensus 701 ~~~ 703 (1045)
+++
T Consensus 218 ~~~ 220 (381)
T 3rlf_A 218 PLE 220 (381)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=9.9e-45 Score=408.54 Aligned_cols=216 Identities=24% Similarity=0.389 Sum_probs=188.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++ +++++|+|||+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++
T Consensus 4 ~l~i~~ls~~y-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSF-------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 36789999866 24679999999999999999999999999999999999987 5799999999986
Q ss_pred ----Cc-ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 043954 543 ----VQ-KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ----~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 617 (1045)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ...+++.+++++++++.++|.+..++.++ +||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 22 233567999999999999999999999976443 22345556779999999999999998874 799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
|||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+ .|.|+|++||+.. ++..+|||+++|+ +|+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~-~G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMK-QGRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEE
Confidence 9999999999999999999999999999999999999998888754 5999999999986 6888999999998 59999
Q ss_pred EecCCCc
Q 043954 697 YSGMLGR 703 (1045)
Q Consensus 697 ~~G~~~~ 703 (1045)
..|++++
T Consensus 219 ~~g~~~e 225 (359)
T 3fvq_A 219 QTASPHE 225 (359)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9998753
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.2e-44 Score=394.54 Aligned_cols=217 Identities=25% Similarity=0.353 Sum_probs=188.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++. +++.+|+|||+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 578999998752 12359999999999999999999999999999999999987 5799999999987
Q ss_pred C--c---ccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 043954 543 V--Q---KTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 543 ~--~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 616 (1045)
. . ...++.+|||+|++ ..++.+||+||+.++.... ..+.++.+++++++++.++|.+..++.++ +|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 3 1 13456799999986 3455789999999986543 23566667789999999999998888874 79
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV-RTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ ++.+.||++++|+ +|++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~-~G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMK-EGRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999997 56999999999987 5678899999998 5999
Q ss_pred EEecCCCc
Q 043954 696 IYSGMLGR 703 (1045)
Q Consensus 696 ~~~G~~~~ 703 (1045)
++.|++++
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998753
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.5e-44 Score=382.98 Aligned_cols=213 Identities=22% Similarity=0.302 Sum_probs=184.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378899998652 3569999999999999999999999999999999999987 5799999999986
Q ss_pred Ccc------ccc-ccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 543 VQK------TFA-RISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~~------~~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
... ..+ +.++|++|++.+++.+||+||+.++...+ ....++.+++++++++.++|.+..++.++ +
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----E 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----G
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 431 122 56899999999999999999999876543 12344455678999999999988888874 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ..+.||++++|+ +|++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~-~G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMK-DGKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEE-TTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 348899999998 5999
Q ss_pred EEecCC
Q 043954 696 IYSGML 701 (1045)
Q Consensus 696 ~~~G~~ 701 (1045)
++.|+.
T Consensus 218 ~~~g~~ 223 (224)
T 2pcj_A 218 VGEITR 223 (224)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 998863
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.4e-44 Score=389.29 Aligned_cols=214 Identities=27% Similarity=0.369 Sum_probs=186.2
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+ +++++|+|||+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++
T Consensus 24 ~l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 37899999876 23569999999999999999999999999999999999987 5799999999986
Q ss_pred C--c---ccccccceEeecCCccCCCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 043954 543 V--Q---KTFARISGYCEQTDIHSPQITVEESVKFSA-WLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 543 ~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 616 (1045)
. . ...++.++||+|++.+++.+||+||+.++. ... ....++.+++++++++.++|.+..++.++ +|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hC
Confidence 3 1 123456899999999999999999999864 322 22344456678999999999988888874 79
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|+ +|+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMD-GGYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5677899999998 58999
Q ss_pred EecCC
Q 043954 697 YSGML 701 (1045)
Q Consensus 697 ~~G~~ 701 (1045)
+.|++
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99875
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.6e-44 Score=389.56 Aligned_cols=214 Identities=21% Similarity=0.264 Sum_probs=185.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+ +++++|+|||+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++
T Consensus 6 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 37899999865 23569999999999999999999999999999999999987 5799999999886
Q ss_pred Cc----------------ccccccceEeecCCccCCCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 043954 543 VQ----------------KTFARISGYCEQTDIHSPQITVEESVKFSA-WLRLPPEIDSETKARFVEEVIETIELDDI-K 604 (1045)
Q Consensus 543 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~ 604 (1045)
.. ...++.+|||+|++.+++.+||+||+.++. ..+ ....++.+++++++++.+||.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123456899999999999999999999864 322 22344456678999999999988 8
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcc
Q 043954 605 DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFD 684 (1045)
Q Consensus 605 ~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 684 (1045)
++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||
T Consensus 148 ~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 88774 79999999999999999999999999999999999999999999999878999999999975 5677899
Q ss_pred eEEEEecCcEEEEecCC
Q 043954 685 ELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 685 ~v~~l~~gG~~~~~G~~ 701 (1045)
++++|+ +|+++..|++
T Consensus 222 ~v~~l~-~G~i~~~g~~ 237 (262)
T 1b0u_A 222 HVIFLH-QGKIEEEGDP 237 (262)
T ss_dssp EEEEEE-TTEEEEEECH
T ss_pred EEEEEE-CCEEEEeCCH
Confidence 999998 5999999875
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.5e-44 Score=388.45 Aligned_cols=218 Identities=23% Similarity=0.297 Sum_probs=186.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++|+|||+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 478999998762 3569999999999999999999999999999999999987 5799999999986
Q ss_pred Ccc----cccccceEeecCCccCCCCCHHHHHHHHhhh-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccc
Q 043954 543 VQK----TFARISGYCEQTDIHSPQITVEESVKFSAWL-RLPP---------EIDSETKARFVEEVIETIELDDIKDSLV 608 (1045)
Q Consensus 543 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~l~L~~~~~~~v 608 (1045)
... ..++.++|++|++.+++.+||+||+.++... .... ....++.+++++++++.+||.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 1245689999999889999999999986532 1010 0122334566889999999998888887
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEE
Q 043954 609 GIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLL 688 (1045)
Q Consensus 609 g~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~ 688 (1045)
+ +|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++
T Consensus 152 ~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 4 79999999999999999999999999999999999999999999999878999999999987 56788999999
Q ss_pred EecCcEEEEecCCC
Q 043954 689 MKAGGRIIYSGMLG 702 (1045)
Q Consensus 689 l~~gG~~~~~G~~~ 702 (1045)
|+ +|++++.|+++
T Consensus 226 l~-~G~i~~~g~~~ 238 (257)
T 1g6h_A 226 MF-NGQIIAEGRGE 238 (257)
T ss_dssp EE-TTEEEEEEESH
T ss_pred EE-CCEEEEEeCHH
Confidence 98 58999999864
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-43 Score=385.20 Aligned_cols=214 Identities=27% Similarity=0.341 Sum_probs=186.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+ +++++|+|||+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++.
T Consensus 15 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 47899999865 23569999999999999999999999999999999999987 5799999999986
Q ss_pred Cc--ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 543 VQ--KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 543 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
.. ...++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.++|.+..++.++ +|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHH
Confidence 43 234567899999999999999999999875443 12344445678899999999988888874 799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|+ +|++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~-~G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEE-CCEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999975 4666799999998 589999987
Q ss_pred C
Q 043954 701 L 701 (1045)
Q Consensus 701 ~ 701 (1045)
+
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 5
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.1e-43 Score=398.12 Aligned_cols=217 Identities=23% Similarity=0.376 Sum_probs=190.7
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|++++++ +++++|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|++
T Consensus 13 ~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 3578999987541 23569999999999999999999999999999999999987 579999999998
Q ss_pred CCc-ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 043954 542 KVQ-KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 542 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 620 (1045)
+.. ...++.+|||+|+..+++.+||+||+.|+...+ ..++++.+++++++++.++|.+..++.++ +|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHH
Confidence 743 234567999999999999999999999986553 23455566789999999999998888874 799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
||||+|||||+.+|++|||||||||||+.++.++.+.|+++.++ |+|+|++||++. ++..+||++++|+ +|+++..|
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g 228 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLH-EGNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999975 6788999999998 59999999
Q ss_pred CCC
Q 043954 700 MLG 702 (1045)
Q Consensus 700 ~~~ 702 (1045)
+++
T Consensus 229 ~~~ 231 (355)
T 1z47_A 229 TPE 231 (355)
T ss_dssp CHH
T ss_pred CHH
Confidence 864
No 12
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.7e-44 Score=400.27 Aligned_cols=248 Identities=27% Similarity=0.386 Sum_probs=193.6
Q ss_pred CCCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccc
Q 043954 415 PKMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHD 494 (1045)
Q Consensus 415 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~ 494 (1045)
...+++.++.+|+.++.+.+++..... .... .+.....++++||++.|+ +++++|+|
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~---~~~~--------~~~~~~~i~~~~vs~~y~------------~~~~vL~~ 72 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLP---GAGP--------LRFQKGRIEFENVHFSYA------------DGRETLQD 72 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCT---TCBC--------CCCSSCCEEEEEEEEESS------------TTCEEEEE
T ss_pred hhHHHHHHHHHHHHHHHhCCccccccc---cccc--------cCCCCCeEEEEEEEEEcC------------CCCceeee
Confidence 356788889999998876554322111 0000 011223688999999763 23569999
Q ss_pred ccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHH
Q 043954 495 ITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVK 571 (1045)
Q Consensus 495 vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~ 571 (1045)
|||+|++||++||+||||||||||+|+|+|+++ |.+|+|.++|+++.. ..+++.++||+|++.+++ .||+|||.
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~ 149 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIR 149 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHH
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHH
Confidence 999999999999999999999999999999988 579999999998754 235678999999988774 69999999
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 043954 572 FSAWLRLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 644 (1045)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPts 644 (1045)
++... ...+ .++++++.+++ ++..++.+|+.+. +|||||||||+|||||+++|+|||||||||
T Consensus 150 ~~~~~-----~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~-~LSGGqrQRvaiARAL~~~p~iLlLDEPts 219 (306)
T 3nh6_A 150 YGRVT-----AGND----EVEAAAQAAGIHDAIMAFPEGYRTQVGERGL-KLSGGEKQRVAIARTILKAPGIILLDEATS 219 (306)
T ss_dssp TTSTT-----CCHH----HHHHHHHHHTCHHHHHHSTTGGGCEESTTSB-CCCHHHHHHHHHHHHHHHCCSEEEEECCSS
T ss_pred hhccc-----CCHH----HHHHHHHHhCcHHHHHhccchhhhHhcCCcC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 86421 1222 23344444443 3467788887764 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 645 GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|||+.++..|++.|+++.+ ++|+|++||+++ ....||+|++|+ +|++++.|+++
T Consensus 220 ~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~aD~i~vl~-~G~iv~~G~~~ 273 (306)
T 3nh6_A 220 ALDTSNERAIQASLAKVCA-NRTTIVVAHRLS--TVVNADQILVIK-DGCIVERGRHE 273 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH--HHHTCSEEEEEE-TTEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH--HHHcCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999864 799999999976 345699999998 59999999864
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-43 Score=399.87 Aligned_cols=214 Identities=25% Similarity=0.374 Sum_probs=187.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++ +++++|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYF-------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 6788998865 23569999999999999999999999999999999999987 57999999999875
Q ss_pred cc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 544 QK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 544 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
.. ..++.+|||+|+..+++++||+||+.|+...+ ..++++.+++++++++.++|.+..++.++ +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 32 23467999999999999999999999976433 22334445678999999999998888874 79999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
||+|||||+.+|++|||||||||||+.++.++.+.|+++.++ |.|+|++||+.. ++...||++++|+ +|+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFN-QGKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999765 999999999975 6778999999998 5999999987
Q ss_pred C
Q 043954 702 G 702 (1045)
Q Consensus 702 ~ 702 (1045)
+
T Consensus 219 ~ 219 (359)
T 2yyz_A 219 D 219 (359)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-43 Score=399.63 Aligned_cols=214 Identities=26% Similarity=0.370 Sum_probs=188.9
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++ +++++|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6788888754 23569999999999999999999999999999999999987 57999999999874
Q ss_pred cc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 544 QK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 544 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
.. ..++.+|||+|+..+++++||+||+.|+...+ ..++++.+++++++++.++|.+..++.++ +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHH
Confidence 32 23467999999999999999999999986543 23455566789999999999998888874 79999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
||+|||||+.+|++|||||||||||+.++.++.+.|+++.++ |+|+|++||++. ++...||++++|+ +|+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIR-EGEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999999999999999999999999765 999999999975 6788999999998 5999999986
Q ss_pred C
Q 043954 702 G 702 (1045)
Q Consensus 702 ~ 702 (1045)
+
T Consensus 219 ~ 219 (362)
T 2it1_A 219 D 219 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.8e-43 Score=399.95 Aligned_cols=215 Identities=25% Similarity=0.364 Sum_probs=189.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++ +++++|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++
T Consensus 3 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEEC
Confidence 36789998865 23569999999999999999999999999999999999987 5799999999876
Q ss_pred Cc-------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 543 VQ-------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
.. ...++.+|||+|+..+++++||+||+.|+...+ ..++++.+++++++++.++|.+..++.++ +
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~ 139 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----E 139 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----G
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----c
Confidence 43 123467999999999999999999999986554 23455566789999999999998888874 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.++ |.|+|++||++. ++..+||++++|+ +|+
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~ 217 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGV 217 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEe-CCE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 6778999999998 599
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
++..|+++
T Consensus 218 i~~~g~~~ 225 (372)
T 1g29_1 218 LQQVGSPD 225 (372)
T ss_dssp EEEEECHH
T ss_pred EEEeCCHH
Confidence 99999864
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.9e-43 Score=386.21 Aligned_cols=214 Identities=22% Similarity=0.346 Sum_probs=186.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+ +++++|+|||+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 57899999865 24679999999999999999999999999999999999987 5799999999987
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
.. ...++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+++.+..++.++ +||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 53 234566899999998888999999999875432 112234568899999999998888874 69999
Q ss_pred HHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 620 QRKRLTIAVELVS------NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 620 qrqRv~ia~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
|||||+|||||+. +|++|||||||+|||+.++.++++.|++++++ |+|+|++||+++ ++.+.||++++|+ +
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~-~ 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLA-Q 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEE-T
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEE-C
Confidence 9999999999999 99999999999999999999999999999876 569999999976 5677899999998 5
Q ss_pred cEEEEecCCCc
Q 043954 693 GRIIYSGMLGR 703 (1045)
Q Consensus 693 G~~~~~G~~~~ 703 (1045)
|++++.|++++
T Consensus 224 G~i~~~g~~~~ 234 (266)
T 4g1u_C 224 GKLVACGTPEE 234 (266)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEEcCHHH
Confidence 99999998754
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-43 Score=380.31 Aligned_cols=214 Identities=21% Similarity=0.323 Sum_probs=182.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++++. ++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 478999998762 3569999999999999999999999999999999999987 5799999999986
Q ss_pred Cccc----ccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCC
Q 043954 543 VQKT----FARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIE-LDDIKDSLVGIPGQSGLS 617 (1045)
Q Consensus 543 ~~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LS 617 (1045)
.... .++.++|++|++.+++.+||+||+.++.... ...++.++.++++++.++ +.+..++.+ .+||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 4321 2345899999999999999999999864211 112233456788999994 887777776 3799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|+|++||+++ ++.+.||++++|+ +|++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE-TGQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999878999999999975 5778999999998 599999
Q ss_pred ecCCC
Q 043954 698 SGMLG 702 (1045)
Q Consensus 698 ~G~~~ 702 (1045)
.|+++
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 88753
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.4e-43 Score=399.23 Aligned_cols=214 Identities=28% Similarity=0.383 Sum_probs=188.6
Q ss_pred EEEeceEEEEecCcccccccccccccc--ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQ--LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
++++|+++++. +++ +|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|++
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67889988652 356 9999999999999999999999999999999999987 579999999987
Q ss_pred CCc------ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 043954 542 KVQ------KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSG 615 (1045)
Q Consensus 542 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 615 (1045)
+.. ...++.+|||+|+..+++.+||+||+.|+...+ ..++++.+++++++++.++|.+..++.++ +
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 633 224567999999999999999999999976443 23455566789999999999998888874 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.++ |+|+|++||+++ ++...||++++|+ +|+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~-~G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 6788999999998 599
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
++..|+++
T Consensus 219 i~~~g~~~ 226 (353)
T 1oxx_K 219 LVQVGKPE 226 (353)
T ss_dssp EEEEECHH
T ss_pred EEEEcCHH
Confidence 99999874
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.4e-43 Score=399.43 Aligned_cols=214 Identities=21% Similarity=0.348 Sum_probs=182.6
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++ +++++|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 7899999866 23569999999999999999999999999999999999987 57999999999874
Q ss_pred cc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 544 QK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 544 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
.. ..++.+|||+|+..+++++||+||+.|+...+ ..++++.+++++++++.++|.+..++.+ .+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999875432 2345566678999999999999888887 479999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
||+|||||+.+|++|||||||||||+.++.++.+.|+++.++ |.|+|++||+.. ++..+||++++|+ +|+++..|++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999765 999999999975 6778999999998 5999999987
Q ss_pred C
Q 043954 702 G 702 (1045)
Q Consensus 702 ~ 702 (1045)
+
T Consensus 227 ~ 227 (372)
T 1v43_A 227 T 227 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=9.4e-43 Score=392.76 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=183.9
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++ +++ +|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 5678888754 235 9999999999999999999999999999999999987 57999999999875
Q ss_pred c-ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 544 Q-KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 544 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
. ...++.+|||+|+..+++.+||+||+.|+...+.. .++ ++++++++.++|.+..++.++ +|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 3 22356799999999999999999999998654321 111 568899999999999888874 79999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++ |+|+|++||++. ++..++|++++|+ +|+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999999999999999765 999999999975 6788999999998 5999999986
Q ss_pred C
Q 043954 702 G 702 (1045)
Q Consensus 702 ~ 702 (1045)
+
T Consensus 213 ~ 213 (348)
T 3d31_A 213 E 213 (348)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-42 Score=372.12 Aligned_cols=208 Identities=22% Similarity=0.342 Sum_probs=179.4
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. + +|+|+|+++++ |+++|+||||||||||+|+|+|+.+ |.+|+|.++|++..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46788888651 2 49999999999 9999999999999999999999987 57999999999864
Q ss_pred c-ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 043954 544 Q-KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 544 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 622 (1045)
. ...++.+||++|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.++ +|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 3 223567899999999999999999998864321 112225668899999999988888874 69999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 623 RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 623 Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|++|||||+.+|++|+|||||+|||+.+++.+++.|++++++ |+|+|++||+++ ++.+.||++++|+ +|++++.|++
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~-~G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999999999999999764 999999999975 5678899999998 5999999875
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.9e-42 Score=375.80 Aligned_cols=217 Identities=24% Similarity=0.302 Sum_probs=176.2
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCC--CCCCeEEEEEEECCee
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~--~~~~~~~G~I~~~g~~ 541 (1045)
++++|+++.+. ++++|+|||+++++||+++|+||||||||||+|+|+|+ .+ |.+|+|.++|++
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEE
Confidence 67899998652 35699999999999999999999999999999999998 44 689999999998
Q ss_pred CCcc---cc-cccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCCCCCC-
Q 043954 542 KVQK---TF-ARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-DDIKDSLVGIPGQSG- 615 (1045)
Q Consensus 542 ~~~~---~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~vg~~~~~~- 615 (1045)
+... .. ++.++|++|++.+++.+||+||+.+............++..++++++++.+|+ .+..++.++ .
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cC
Confidence 6432 11 33478999999999999999999886431111112233445668899999999 477888764 5
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHh-cceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEA-FDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG~ 694 (1045)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|+|++||+++ .+... ||++++|+ +|+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~-~G~ 221 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMM-DGR 221 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999767999999999986 35555 59999998 589
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
+++.|+++
T Consensus 222 i~~~g~~~ 229 (250)
T 2d2e_A 222 VVATGGPE 229 (250)
T ss_dssp EEEEESHH
T ss_pred EEEEeCHH
Confidence 99999863
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2e-42 Score=379.00 Aligned_cols=217 Identities=22% Similarity=0.323 Sum_probs=181.8
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+.... ...+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|++..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 67889998763100 001469999999999999999999999999999999999987 57999999999875
Q ss_pred cccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCCHHH
Q 043954 544 QKTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD--DIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 544 ~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~LSgGq 620 (1045)
....++.+||++|++ ..++.+||+||+.++.... .+.++.+++++++++.+||. +..++.++ +|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChh-----hCCHHH
Confidence 333456799999985 5677899999999864321 11112234578899999998 88888774 799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|+ +|++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~-~G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLE-KGKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCC
Confidence 99999999999999999999999999999999999999999877999999999987 4667899999998 589999887
Q ss_pred C
Q 043954 701 L 701 (1045)
Q Consensus 701 ~ 701 (1045)
+
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 5
No 24
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-41 Score=446.02 Aligned_cols=248 Identities=24% Similarity=0.324 Sum_probs=198.7
Q ss_pred ccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccccce
Q 043954 419 RAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGA 498 (1045)
Q Consensus 419 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~ 498 (1045)
++..+.+|+.+..+.+++.+.... +... +.....++|+||+|+|+.. .+.++|+|||++
T Consensus 1043 ~~~~a~~ri~~~l~~~~~~~~~~~---~~~~--------~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~ 1101 (1321)
T 4f4c_A 1043 KATFAGGIIFGMLRKISKIDSLSL---AGEK--------KKLYGKVIFKNVRFAYPER----------PEIEILKGLSFS 1101 (1321)
T ss_dssp HHHHHHHHHHHHHHCCCSSCTTCC---CSBC--------CCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEE
T ss_pred HHHHHHHHHHHHhhCcccCCCccC---CCCC--------CCCCCeEEEEEEEEeCCCC----------CCCccccceeEE
Confidence 345567888887766554332111 0000 1122368999999977532 235799999999
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHHhh
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAW 575 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 575 (1045)
|+|||.+||+||||||||||+++|.|+++ |.+|+|.+||.|+.+ ..+|+.+++|||++.++. .|++|||.|+.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl- 1177 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL- 1177 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS-
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC-
Confidence 99999999999999999999999999988 679999999999754 457788999999888775 59999998753
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 576 LRLPPEIDSETKARFVEEVIETIE-------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
.+.+.++++ +.++++..+ |++..||.+|+.|. +||||||||++|||||+++|+||+||||||+||+
T Consensus 1178 --d~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1178 --DPSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250 (1321)
T ss_dssp --CTTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS
T ss_pred --CCCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecCCCc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH
Confidence 123344443 445555444 56789999998885 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 649 RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
++++.|.+.|+++. +|+|+|+++|+++ ....||+|+||+ +|++++.|+++
T Consensus 1251 ~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1251 ESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-NGTIIEKGTHT 1300 (1321)
T ss_dssp HHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-SSSEEEEECHH
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999998864 4899999999987 578899999998 59999999974
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.2e-42 Score=380.08 Aligned_cols=219 Identities=21% Similarity=0.326 Sum_probs=181.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. ++++|+|||+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 21 ~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 588999998762 3569999999999999999999999999999999999987 5799999999876
Q ss_pred C--c---ccccccceEeecCCccC--CCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 043954 543 V--Q---KTFARISGYCEQTDIHS--PQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQS 614 (1045)
Q Consensus 543 ~--~---~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 614 (1045)
. . ...++.++|++|++.+. +.+||+||+.++...... .....++.+++++++++.+||.+..++.++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG----- 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence 4 2 23456799999986543 356999999875321100 001112334668899999999988888874
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEecCCcHHHHHhcceEEEEecC
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTT--VCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tv--i~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++++++|+|| |++||+++ ++.+.||++++|+ +
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~-~ 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK-D 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE-T
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 699999999999999999999999999999999999999999999998779999 99999986 4667899999998 5
Q ss_pred cEEEEecCCCc
Q 043954 693 GRIIYSGMLGR 703 (1045)
Q Consensus 693 G~~~~~G~~~~ 703 (1045)
|++++.|++++
T Consensus 239 G~i~~~g~~~~ 249 (279)
T 2ihy_A 239 GQSIQQGAVED 249 (279)
T ss_dssp TEEEEEEEHHH
T ss_pred CEEEEECCHHH
Confidence 99999998643
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.2e-41 Score=372.72 Aligned_cols=223 Identities=23% Similarity=0.292 Sum_probs=182.1
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
...++++|+++.+ +++++|+|||+++++||+++|+||||||||||+|+|+|+....|.+|+|.++|+
T Consensus 18 ~~~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~ 84 (267)
T 2zu0_C 18 SHMLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 84 (267)
T ss_dssp --CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTE
T ss_pred CceEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCE
Confidence 3358899999875 235699999999999999999999999999999999998422268999999999
Q ss_pred eCCcc---cc-cccceEeecCCccCCCCCHHHHHHHHhh-hc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 043954 541 PKVQK---TF-ARISGYCEQTDIHSPQITVEESVKFSAW-LR---LPPEIDSETKARFVEEVIETIELD-DIKDSLVGIP 611 (1045)
Q Consensus 541 ~~~~~---~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~ 611 (1045)
++... .. ++.++|++|++.+++.+||.||+.+... .+ .....+.++.+++++++++.+||. +..++.++
T Consensus 85 ~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 162 (267)
T 2zu0_C 85 DLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN-- 162 (267)
T ss_dssp EGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT--
T ss_pred ECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc--
Confidence 86431 11 2348999999999999999999987541 11 111223444456788999999996 56677653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHh-cceEEEEe
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEA-FDELLLMK 690 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~ 690 (1045)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|+|++||++. .+... ||++++|+
T Consensus 163 --~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~ 239 (267)
T 2zu0_C 163 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY 239 (267)
T ss_dssp --TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEE
T ss_pred --cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEE
Confidence 249999999999999999999999999999999999999999999998767999999999976 34444 89999998
Q ss_pred cCcEEEEecCCC
Q 043954 691 AGGRIIYSGMLG 702 (1045)
Q Consensus 691 ~gG~~~~~G~~~ 702 (1045)
+|++++.|+++
T Consensus 240 -~G~i~~~g~~~ 250 (267)
T 2zu0_C 240 -QGRIVKSGDFT 250 (267)
T ss_dssp -TTEEEEEECTT
T ss_pred -CCEEEEEcCHH
Confidence 59999999874
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.3e-41 Score=364.41 Aligned_cols=209 Identities=23% Similarity=0.336 Sum_probs=176.6
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+. +++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.
T Consensus 4 ~l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE------
T ss_pred eEEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE------
Confidence 378899998652 03569999999999999999999999999999999999987 5799998
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
.++.++|++|++.+++.+||+||+.++...... .....++.+++++++++.+||.+..++.++ +||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHH
Confidence 235689999999888899999999986432110 001122334568899999999988888774 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.||++++|+ +|+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLN-KQN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEE-TTE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCe-EecCC
Confidence 9999999999999999999999999999999999999999877 999999999975 4668899999998 588 88887
Q ss_pred CCc
Q 043954 701 LGR 703 (1045)
Q Consensus 701 ~~~ 703 (1045)
+++
T Consensus 212 ~~~ 214 (253)
T 2nq2_C 212 TRN 214 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.2e-41 Score=364.76 Aligned_cols=205 Identities=22% Similarity=0.357 Sum_probs=178.1
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++. ++|+|+|+++++||+++|+||||||||||+|+|+|..+ |. |+|.++|++.
T Consensus 4 ~l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEG
T ss_pred EEEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEEC
Confidence 3678888861 58999999999999999999999999999999999987 57 9999999986
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 619 (1045)
.. ...++.++|++|++.+++.+||+||+.++.. . ..+ +++++++++.++|.+..++.++ +||||
T Consensus 64 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 130 (249)
T 2qi9_C 64 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTN-----QLSGG 130 (249)
T ss_dssp GGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGG-----GCCHH
T ss_pred CcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChh-----hCCHH
Confidence 42 2345678999999988899999999987521 1 112 3457889999999988888764 79999
Q ss_pred HHHHHHHHHHHhhCCC-------eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 620 QRKRLTIAVELVSNPS-------IIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~-------illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
||||++|||||+.+|+ +|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.||++++|+ +
T Consensus 131 q~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~-~ 208 (249)
T 2qi9_C 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLK-G 208 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE-T
T ss_pred HHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 9999999999999999 99999999999999999999999999877999999999975 4668999999998 5
Q ss_pred cEEEEecCCC
Q 043954 693 GRIIYSGMLG 702 (1045)
Q Consensus 693 G~~~~~G~~~ 702 (1045)
|++++.|+++
T Consensus 209 G~i~~~g~~~ 218 (249)
T 2qi9_C 209 GKMLASGRRE 218 (249)
T ss_dssp TEEEEEEEHH
T ss_pred CEEEEeCCHH
Confidence 8999998764
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.7e-41 Score=372.05 Aligned_cols=219 Identities=24% Similarity=0.308 Sum_probs=174.4
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+.. .+++++|+|||+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++
T Consensus 16 ~l~~~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPN----------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTT----------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 4789999985421 012569999999999999999999999999999999999987 5799999999986
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHc--CCCccccccccCCCCCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP-PEIDSETKARFVEEVIETI--ELDDIKDSLVGIPGQSGL 616 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l--~L~~~~~~~vg~~~~~~L 616 (1045)
.. ...++.++||+|++.+++ .||+||+.++...... ........+..++++++.+ |+.+..+..+ .+|
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~L 157 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----NQL 157 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----TTS
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----CCC
Confidence 43 224567999999988776 5999999885321100 0000011123356677777 6666666655 479
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|+|++||+++ ..+.||++++|+ +|++
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~-~G~i 234 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLK-EGSV 234 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999864 4899999999975 345699999998 5899
Q ss_pred EEecCCC
Q 043954 696 IYSGMLG 702 (1045)
Q Consensus 696 ~~~G~~~ 702 (1045)
+..|+++
T Consensus 235 ~~~g~~~ 241 (271)
T 2ixe_A 235 CEQGTHL 241 (271)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998753
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1e-41 Score=359.92 Aligned_cols=202 Identities=21% Similarity=0.321 Sum_probs=171.8
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+ ++ ++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 9 ~~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 72 (214)
T 1sgw_A 9 SKLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP 72 (214)
T ss_dssp CEEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 457899998854 23 69999999999999999999999999999999999987 579999999988
Q ss_pred CCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 542 KVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
.. ..++.++|++|++.+++.+||+||+.+....+.. ... +++++++++.+++.+. ++.++ +||||||
T Consensus 73 ~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~~~-----~LSgGqk 139 (214)
T 1sgw_A 73 IT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKKLG-----ELSQGTI 139 (214)
T ss_dssp GG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSBGG-----GSCHHHH
T ss_pred hh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCChh-----hCCHHHH
Confidence 65 3567799999999999999999999987544311 111 3457889999999877 77663 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEE
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRI 695 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 695 (1045)
||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++...+|+++++. |++
T Consensus 140 qrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~--~~~ 210 (214)
T 1sgw_A 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS--TKI 210 (214)
T ss_dssp HHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB--C--
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC--Ccc
Confidence 9999999999999999999999999999999999999999877999999999987 4667788877663 554
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.4e-41 Score=366.07 Aligned_cols=213 Identities=25% Similarity=0.419 Sum_probs=174.3
Q ss_pred ceeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 461 QLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 461 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
+..++++|+++.++ .+++++|+|||+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+
T Consensus 5 ~~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~ 71 (247)
T 2ff7_A 5 HHDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGH 71 (247)
T ss_dssp CEEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred cCceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 35688999998652 123569999999999999999999999999999999999987 57999999999
Q ss_pred eCCc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccC
Q 043954 541 PKVQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKD-------SLVGI 610 (1045)
Q Consensus 541 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~ 610 (1045)
++.. ...++.++|++|++.+++ .||+||+.++.. .... +.++++++.+++.+..+ +.++.
T Consensus 72 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 141 (247)
T 2ff7_A 72 DLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGE 141 (247)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCST
T ss_pred EhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhC
Confidence 8643 234567899999988776 699999987521 1122 23566777777765433 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 611 PGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 611 ~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.+ ..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|+|++||+++ ..+.||++++|+
T Consensus 142 ~~-~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~--~~~~~d~v~~l~ 217 (247)
T 2ff7_A 142 QG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME 217 (247)
T ss_dssp TT-TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 32 4799999999999999999999999999999999999999999999995 5999999999986 335699999998
Q ss_pred cCcEEEEecCC
Q 043954 691 AGGRIIYSGML 701 (1045)
Q Consensus 691 ~gG~~~~~G~~ 701 (1045)
+|++++.|++
T Consensus 218 -~G~i~~~g~~ 227 (247)
T 2ff7_A 218 -KGKIVEQGKH 227 (247)
T ss_dssp -TTEEEEEECH
T ss_pred -CCEEEEECCH
Confidence 5899999875
No 32
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.8e-42 Score=414.25 Aligned_cols=249 Identities=22% Similarity=0.308 Sum_probs=194.9
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.+... .... .+..+..++++|++++++ .+++++|+|+
T Consensus 305 ~~~~~~~s~~ri~~~l~~~~~~~~~~---~~~~--------~~~~~~~i~~~~v~~~y~-----------~~~~~~l~~i 362 (587)
T 3qf4_A 305 FIVRASASAKRVLEVLNEKPAIEEAD---NALA--------LPNVEGSVSFENVEFRYF-----------ENTDPVLSGV 362 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSCCCCT---TCBC--------CSCCCCCEEEEEEEECSS-----------SSSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCCC---Cccc--------cCCCCCcEEEEEEEEEcC-----------CCCCcceece
Confidence 34566778899988876554322110 0000 011223689999998653 2346799999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||+++|+||||||||||+|+|+|.++ |.+|+|.+||+++.. ...++.++||+|++.+++ .||+||+.+
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~ 439 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-GTIKENLKW 439 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-ccHHHHHhc
Confidence 99999999999999999999999999999988 579999999998754 345677999999988875 499999987
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETI-------ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.. ..++++ +.+.++.. .+++..|+.+|+.+. +||||||||++|||||+++|++|+||||||+
T Consensus 440 ~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~-~LSgGqrQrv~lARal~~~p~illlDEpts~ 509 (587)
T 3qf4_A 440 GRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVERGGR-NFSGGQKQRLSIARALVKKPKVLILDDCTSS 509 (587)
T ss_dssp TCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECSSSC-SSCHHHHHHHHHHHHHHTCCSEEEEESCCTT
T ss_pred cCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcCCCC-CcCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 531 122222 22223322 455678889988774 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
||+.+++++.+.|+++. +|+|+|+++|+++ ..+.||++++|+ +|++++.|++++
T Consensus 510 LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~-~G~i~~~g~~~e 563 (587)
T 3qf4_A 510 VDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH-EGKVAGFGTHKE 563 (587)
T ss_dssp SCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE-TTEEEEEECHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE-CCEEEEECCHHH
Confidence 99999999999999974 5899999999975 457899999998 599999998754
No 33
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.3e-41 Score=413.12 Aligned_cols=247 Identities=26% Similarity=0.393 Sum_probs=194.8
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
.+++..+.+|+.++.+.+++.+.... ... .+..+..++++|++++++ .+++++|+|+|
T Consensus 304 ~~~~~~s~~ri~~~l~~~~~~~~~~~---~~~--------~~~~~~~i~~~~v~~~y~-----------~~~~~~l~~is 361 (578)
T 4a82_A 304 LTQSFASMDRVFQLIDEDYDIKNGVG---AQP--------IEIKQGRIDIDHVSFQYN-----------DNEAPILKDIN 361 (578)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSCCCTT---CCC--------CCCCSCCEEEEEEEECSC-----------SSSCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCC---ccc--------cCCCCCeEEEEEEEEEcC-----------CCCCcceeeeE
Confidence 45667788999888776543321110 000 011234688999998653 23457999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||+++.. ...++.++||+|++.+++. ||+||+.++
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~ 438 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLG 438 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGG
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcC
Confidence 9999999999999999999999999999988 679999999998754 3456779999999888765 999999875
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETI-------ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
.. ..++++ +.+.++.. .+++..|+.+|+.|. +||||||||++|||||+++|++|+||||||||
T Consensus 439 ~~-----~~~~~~----~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~-~LSgGq~Qrv~lAral~~~p~illlDEpts~L 508 (578)
T 4a82_A 439 RP-----TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSAL 508 (578)
T ss_dssp CS-----SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTC
T ss_pred CC-----CCCHHH----HHHHHHHhCcHHHHHhCcchhhhhhccCCC-cCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 31 122222 33444443 345678899988774 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|+.+++.+.+.++++. +++|+|+++|+++ ..+.||++++|+ +|++++.|+++
T Consensus 509 D~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~~~~~d~i~~l~-~G~i~~~g~~~ 560 (578)
T 4a82_A 509 DLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGTHR 560 (578)
T ss_dssp CHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE-TTEEEEEECHH
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999885 4899999999987 356799999998 59999999874
No 34
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.5e-40 Score=405.42 Aligned_cols=252 Identities=23% Similarity=0.314 Sum_probs=197.2
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCccccccee-EEEeceEEEEecCccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLT-MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
.+++..+.+|+.++.+.+++.+... .... . +..... ++++|++++++.. +++++|+|+
T Consensus 305 ~~~~~~s~~ri~~~l~~~~~~~~~~---~~~~---~-----~~~~~~~i~~~~v~~~y~~~----------~~~~vl~~i 363 (595)
T 2yl4_A 305 LMKGLGAGGRLWELLEREPKLPFNE---GVIL---N-----EKSFQGALEFKNVHFAYPAR----------PEVPIFQDF 363 (595)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSCSSC---SBCC---C-----TTTCCCCEEEEEEEEECSSC----------TTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccCCCC---CCCC---C-----cCCCCCeEEEEEEEEEeCCC----------CCCccccce
Confidence 4566678899988876544322110 0000 0 001234 8899999976321 124699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.+||+++.. ...++.++||+|++.+++ .||+||+.+
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~ 440 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAY 440 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhh
Confidence 99999999999999999999999999999987 679999999998753 235567999999988876 599999998
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.... ...++ ++++++++.+++ ++..|+.+|+.| .+||||||||++|||||+++|++|+|||||||
T Consensus 441 ~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~-~~LSgGq~qrv~iAral~~~p~illlDEpts~ 513 (595)
T 2yl4_A 441 GADDP--SSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGEKG-VLLSGGQKQRIAIARALLKNPKILLLDEATSA 513 (595)
T ss_dssp TSSST--TTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSS-CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSS
T ss_pred cCCCc--cccCH----HHHHHHHHHcCCHHHHHhCcccccccccCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccC
Confidence 64211 11222 335667777665 456788898776 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
||+.+++.+.+.|+++.+ |+|+|+++|+++ ..+.||++++|+ +|++++.|++++
T Consensus 514 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~-~G~i~~~g~~~~ 567 (595)
T 2yl4_A 514 LDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLD-QGKITEYGKHEE 567 (595)
T ss_dssp CCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEE-TTEEEEEECSCC
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999866 899999999975 456799999998 599999998764
No 35
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-41 Score=412.00 Aligned_cols=245 Identities=27% Similarity=0.400 Sum_probs=191.4
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
.+++..+.+|+.++.+.+++.+... ... .+.....++++|++++++ +++++|+|+|
T Consensus 320 ~~~~~~s~~ri~~~l~~~~~~~~~~----~~~--------~~~~~~~i~~~~v~~~y~------------~~~~~l~~is 375 (598)
T 3qf4_B 320 IQMALASAERIFEILDLEEEKDDPD----AVE--------LREVRGEIEFKNVWFSYD------------KKKPVLKDIT 375 (598)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCSS----CCC--------CCSCCCCEEEEEEECCSS------------SSSCSCCSEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCC----CCC--------CCCCCCeEEEEEEEEECC------------CCCccccceE
Confidence 3455667889988876654322110 000 011123588999998652 2356999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
+++++||+++|+||||||||||+|+|+|.++ |.+|+|.+||+++.. ...++.++||+|++.+++ .||+||+.++
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~ 452 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYG 452 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcC
Confidence 9999999999999999999999999999988 579999999998753 345678999999988775 5999999875
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETI-------ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
.. ..++++ ++++++.+ .+++..|+.+|+.|. +||||||||++|||||+++|++|+||||||+|
T Consensus 453 ~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~-~LSgGq~Qrv~iAral~~~p~illlDEpts~L 522 (598)
T 3qf4_B 453 NP-----GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATSNV 522 (598)
T ss_dssp ST-----TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHT-TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTC
T ss_pred CC-----CCCHHH----HHHHHHHhCCHHHHHhccccccchhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 31 112222 22333322 345677888887764 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
|+.++..+.+.|+++. +|+|+|+++|+++ ..+.||++++|+ +|++++.|+++
T Consensus 523 D~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~~~~~d~i~~l~-~G~i~~~g~~~ 574 (598)
T 3qf4_B 523 DTKTEKSIQAAMWKLM-EGKTSIIIAHRLN--TIKNADLIIVLR-DGEIVEMGKHD 574 (598)
T ss_dssp CHHHHHHHHHHHHHHH-TTSEEEEESCCTT--HHHHCSEEEEEC-SSSEEECSCHH
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999985 5999999999987 346699999998 59999999864
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.4e-40 Score=404.62 Aligned_cols=247 Identities=23% Similarity=0.314 Sum_probs=195.4
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.+.. +. + .+.....++++|++++++. +++++|+|+
T Consensus 307 ~~~~~~~a~~ri~~~l~~~~~~~~~---~~-~---------~~~~~~~i~~~~v~~~y~~-----------~~~~~l~~i 362 (582)
T 3b5x_A 307 EFQRGMAACQTLFGLMDLETERDNG---KY-E---------AERVNGEVDVKDVTFTYQG-----------KEKPALSHV 362 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCCC---CC-C---------CCCCCCeEEEEEEEEEcCC-----------CCccccccc
Confidence 4566777889998887654332110 00 0 0111235899999997631 125699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.+||+++.. ...++.++||+|++.+++ .||+||+.+
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~ 439 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAY 439 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhc
Confidence 99999999999999999999999999999987 579999999998643 345677999999988876 599999988
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELD-------DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.. + ..++ ++++++++.+++. +..|+.+|+.+ .+||||||||++|||||+++|++|+|||||||
T Consensus 440 ~~~---~-~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~-~~LSgGq~qr~~iAral~~~p~illlDEpts~ 510 (582)
T 3b5x_A 440 AAE---G-EYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGENG-TSLSGGQRQRVAIARALLRDAPVLILDEATSA 510 (582)
T ss_pred cCC---C-CCCH----HHHHHHHHHCCCHHHHHhCcccccchhcCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 531 1 1222 2356666666654 45678888776 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++.+.+.|+++.+ |+|+|+++|+++ ..+.||++++|+ +|++++.|+++
T Consensus 511 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~-~G~i~~~g~~~ 563 (582)
T 3b5x_A 511 LDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVD-EGEIIERGRHA 563 (582)
T ss_pred CCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999864 999999999975 456899999998 59999999864
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.4e-40 Score=401.27 Aligned_cols=247 Identities=22% Similarity=0.328 Sum_probs=195.1
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++.+.+++.+.. ..+ .+.....++++|++++++ .+++++|+|+
T Consensus 307 ~~~~~~~a~~ri~~~l~~~~~~~~~----~~~---------~~~~~~~i~~~~v~~~y~-----------~~~~~~l~~v 362 (582)
T 3b60_A 307 QFQRGMAACQTLFAILDSEQEKDEG----KRV---------IDRATGDLEFRNVTFTYP-----------GREVPALRNI 362 (582)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSCCCC----CBC---------CSCCCCCEEEEEEEECSS-----------SSSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCC----CCC---------CCCCCCcEEEEEEEEEcC-----------CCCCccccce
Confidence 4556777889998877654332110 000 011123588999998652 1125699999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.+||+++.. ...++.++||+|++.+++ .||+||+.+
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~ 439 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAY 439 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhc
Confidence 99999999999999999999999999999987 579999999998753 235667999999988876 599999988
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELD-------DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.. + ..++ ++++++++.+++. +..|+.+|+.+ .+||||||||++|||||+++|++|+|||||||
T Consensus 440 ~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~-~~LSgGq~qrl~iAral~~~p~illlDEpts~ 510 (582)
T 3b60_A 440 ART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSA 510 (582)
T ss_dssp TTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS-CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSS
T ss_pred cCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 531 1 1222 2356666666653 46788888776 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||+.+++.+.+.|+++.+ |+|+|+++|+++ ..+.||++++|+ +|++++.|+++
T Consensus 511 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~-~G~i~~~g~~~ 563 (582)
T 3b60_A 511 LDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVE-DGIIVERGTHS 563 (582)
T ss_dssp CCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEE-TTEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEeccHH--HHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999865 999999999986 346799999998 59999999863
No 38
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-40 Score=358.19 Aligned_cols=211 Identities=27% Similarity=0.425 Sum_probs=173.7
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.++ +++++|+|||+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56888887431 23569999999999999999999999999999999999987 57999999999864
Q ss_pred c---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCCCC
Q 043954 544 Q---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSL-------VGIPGQ 613 (1045)
Q Consensus 544 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~~ 613 (1045)
. ...++.++|++|++.+++ .||+||+.++.. ..... +.++++++.+++.+..++. ++...
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~- 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCc-
Confidence 3 234567999999988776 599999987521 11222 3367788888887665443 33332
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCc
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGG 693 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 693 (1045)
.+|||||||||+|||||+++|++|+|||||+|||+.++..+++.|++++ +|+|+|++||+++ ..+.||++++|+ +|
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~-~G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEE-CC
Confidence 4799999999999999999999999999999999999999999999987 6999999999975 346799999998 58
Q ss_pred EEEEecCCC
Q 043954 694 RIIYSGMLG 702 (1045)
Q Consensus 694 ~~~~~G~~~ 702 (1045)
+++..|+++
T Consensus 214 ~i~~~g~~~ 222 (243)
T 1mv5_A 214 QITGSGKHN 222 (243)
T ss_dssp EECCCSCHH
T ss_pred EEEEeCCHH
Confidence 999888754
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.5e-39 Score=354.80 Aligned_cols=211 Identities=26% Similarity=0.418 Sum_probs=170.7
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.+... ..+++|+|||+++++||+++|+||||||||||+|+|+|+.+ + +|+|.++|+++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 47899999865210 12469999999999999999999999999999999999986 4 79999999986
Q ss_pred Cc---ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 043954 543 VQ---KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIEL-------DDIKDSLVGIPG 612 (1045)
Q Consensus 543 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~ 612 (1045)
.. ...++.++|++|++.+++ .||+||+.++.. .... +.+.++++.+++ ++..++.++...
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~ 153 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKG 153 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSS
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccCCc
Confidence 43 234567999999988775 699999987421 1122 224556666554 334555555443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 613 QSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 613 ~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|+|++||+++. .+.||++++|+ +
T Consensus 154 -~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~--~~~~d~i~~l~-~ 228 (260)
T 2ghi_A 154 -MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST--ISSAESIILLN-K 228 (260)
T ss_dssp -BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--STTCSEEEEEE-T
T ss_pred -CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH--HHhCCEEEEEE-C
Confidence 47999999999999999999999999999999999999999999999864 8999999999863 35699999998 5
Q ss_pred cEEEEecCC
Q 043954 693 GRIIYSGML 701 (1045)
Q Consensus 693 G~~~~~G~~ 701 (1045)
|+++..|++
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 999999875
No 40
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.6e-38 Score=411.81 Aligned_cols=258 Identities=24% Similarity=0.341 Sum_probs=198.1
Q ss_pred cCCCCCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccc
Q 043954 412 LKPPKMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQL 491 (1045)
Q Consensus 412 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i 491 (1045)
......+++..+.+|+.++.+.+++.......+..+ +.....++++|+++.|+.. .++++
T Consensus 989 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~----------~~~~g~i~~~~v~~~y~~~----------~~~~~ 1048 (1284)
T 3g5u_A 989 SFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKP----------NMLEGNVQFSGVVFNYPTR----------PSIPV 1048 (1284)
T ss_dssp SSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCT----------TTTSCCEEEEEEEBCCSCG----------GGCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccc----------cCCCCcEEEEEEEEECCCC----------CCCee
Confidence 344567778888899988876654432211100000 0112358899999876421 23469
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHH
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
|+|+|+++++||++||+||||||||||+++|+|+++ |.+|+|.+||+++.. ...++.++||+|++.++ ..||+|
T Consensus 1049 l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~e 1125 (1284)
T 3g5u_A 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAE 1125 (1284)
T ss_dssp BSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHH
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEcccCCHHHHHhceEEECCCCccc-cccHHH
Confidence 999999999999999999999999999999999988 679999999998753 34567799999988765 579999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 043954 569 SVKFSAWLRLPPEIDSETKARFV-----EEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPT 643 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPt 643 (1045)
|+.++... ...+.++..+.. ++.++ .+++..||.+|+.|. .|||||||||+|||||+++|+||+|||||
T Consensus 1126 Ni~~~~~~---~~~~~~~i~~~~~~~~~~~~i~--~l~~gldt~vge~G~-~LSgGq~Qrv~iARal~~~p~iLiLDEpT 1199 (1284)
T 3g5u_A 1126 NIAYGDNS---RVVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDKGT-QLSGGQKQRIAIARALVRQPHILLLDEAT 1199 (1284)
T ss_dssp HHTCCCSS---CCCCHHHHHHHHHHHTCHHHHS--STTTGGGCBCSTTSC-SSCHHHHHHHHHHHHHHHCCSSEEEESCS
T ss_pred HHhccCCC---CCCCHHHHHHHHHHhCcHHHHH--hCccccccccCCCCC-ccCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99875321 122333322211 12222 456788999998774 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 644 SGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 644 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||||+.+++.+.+.|++. .+|+|+|+++|+++. .+.||||++|+ +|++++.|+++
T Consensus 1200 s~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~--i~~~dri~vl~-~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1200 SALDTESEKVVQEALDKA-REGRTCIVIAHRLST--IQNADLIVVIQ-NGKVKEHGTHQ 1254 (1284)
T ss_dssp SSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG--GGSCSEEEEEE-TBEEEEEECHH
T ss_pred ccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH--HHcCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999885 459999999999873 46799999998 59999999864
No 41
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-40 Score=436.04 Aligned_cols=251 Identities=23% Similarity=0.331 Sum_probs=202.6
Q ss_pred CCcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCccccccccccccccccccc
Q 043954 416 KMSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDI 495 (1045)
Q Consensus 416 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 495 (1045)
..+++..+.+|+.++++.+++.+....... .. ...+..++|+|++|+|+.. +++++|+|+
T Consensus 378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~--~~--------~~~~g~I~~~nvsF~Y~~~----------~~~~vL~~i 437 (1321)
T 4f4c_A 378 VLGTAQGAASGIYEVLDRKPVIDSSSKAGR--KD--------MKIKGDITVENVHFTYPSR----------PDVPILRGM 437 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSSSCCC--CC--------CCCCCCEEEEEEEECCSSS----------TTSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCccccccccccc--cC--------CCCCCcEEEEEeeeeCCCC----------CCCceeece
Confidence 356677889999998877654332111000 00 0112368999999977532 246799999
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|++|++||.+||+||||||||||+++|.|.++ |.+|+|.+||+++.+ ..+|+.++||+|++.++. .||+|||.|
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~ 514 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISL 514 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHT
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccchhccHHHHhhcccccCCcceeeC-CchhHHHhh
Confidence 99999999999999999999999999999998 679999999998754 356778999999887765 599999998
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETI-------ELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+. +..++++ +.++++.. .|++..||.+|+.|. +||||||||++||||+++||+||+||||||+
T Consensus 515 g~-----~~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSa 584 (1321)
T 4f4c_A 515 GK-----EGITREE----MVAACKMANAEKFIKTLPNGYNTLVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSA 584 (1321)
T ss_dssp TC-----TTCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSSSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred hc-----ccchHHH----HHHHHHHccchhHHHcCCCCCccEecCCCC-CCCHHHHHHHHHHHHHccCCCEEEEeccccc
Confidence 63 1233332 34444443 357889999999886 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 646 LDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
||++++..+.+.|+++.+ |+|+|+++|+++ ..+.||+|++|+ +|++++.|++++
T Consensus 585 LD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~-~G~ive~Gth~e 638 (1321)
T 4f4c_A 585 LDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCK-NGQVVEVGDHRA 638 (1321)
T ss_dssp SCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEE-TTEEEEEECHHH
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEee-CCeeeccCCHHH
Confidence 999999999999999754 899999999987 578999999998 599999999754
No 42
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-39 Score=354.01 Aligned_cols=206 Identities=20% Similarity=0.242 Sum_probs=173.0
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++++... ...+++|+|+|++++ ||+++|+||||||||||+|+|+|.. + .+|+|.++|++..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5688888876310 011569999999999 9999999999999999999999987 4 5899999998864
Q ss_pred cccccccce-EeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHH
Q 043954 544 QKTFARISG-YCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 544 ~~~~~~~~~-~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqr 621 (1045)
....++.++ |++|++.+ .+||+||+.+..... ... +++++++++.++|. +..++.++ +||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKLY-----KLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCChh-----hCCHHHH
Confidence 311245789 99998876 899999999875433 111 24578899999998 88888764 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcc-eEEEEecCcEEEEecC
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFD-ELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d-~v~~l~~gG~~~~~G~ 700 (1045)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|++||++. ++.+.|| ++++|+ +|++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~-~G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLV-GNRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEE-CCEEEEecC
Confidence 999999999999999999999999999999999999998743 9999999986 4667899 999998 599999997
Q ss_pred C
Q 043954 701 L 701 (1045)
Q Consensus 701 ~ 701 (1045)
+
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 5
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1e-38 Score=341.85 Aligned_cols=200 Identities=24% Similarity=0.410 Sum_probs=160.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++.++ .+++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~-----------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWE-----------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSS-----------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeC-----------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 478999998542 124579999999999999999999999999999999999987 5799999998
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCC
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-------IKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~ 615 (1045)
.++|++|++.+++. ||+||+.++.. .... ..++.++.+++.+ ..++.++..+ .+
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGG-IT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTC-TT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCCC-Cc
Confidence 37999999888775 99999987531 1111 1233344444432 2334444333 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRA-VKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||||++|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|+|++||+++ ..+.||++++|+ +|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~-~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILH-EGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999997 45654 4899999999975 345699999998 589
Q ss_pred EEEecCC
Q 043954 695 IIYSGML 701 (1045)
Q Consensus 695 ~~~~G~~ 701 (1045)
+++.|++
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999875
No 44
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=370.49 Aligned_cols=211 Identities=20% Similarity=0.287 Sum_probs=175.7
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|++++++ .+++.+|+|||++|++||+++|+||||||||||||+|+|+.+ .+|+|.++|++
T Consensus 18 ~~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 3578999998652 234679999999999999999999999999999999999874 58999999998
Q ss_pred CCcc---cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-------CC
Q 043954 542 KVQK---TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVG-------IP 611 (1045)
Q Consensus 542 ~~~~---~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg-------~~ 611 (1045)
+... ..++.++||+|+..+++ +||+||+.+.. ... +++++++++.++|.+..++... +.
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 6532 34577999999998887 69999996321 112 2347788999999776655543 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 612 GQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 612 ~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
+ .+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. +++|+|++||+.. ....||++++|+
T Consensus 153 g-~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~- 227 (390)
T 3gd7_A 153 G-CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIE- 227 (390)
T ss_dssp T-TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEE-
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEE-
Confidence 2 3599999999999999999999999999999999999999999999864 4899999999974 456799999998
Q ss_pred CcEEEEecCCC
Q 043954 692 GGRIIYSGMLG 702 (1045)
Q Consensus 692 gG~~~~~G~~~ 702 (1045)
+|+++..|++.
T Consensus 228 ~G~i~~~g~~~ 238 (390)
T 3gd7_A 228 ENKVRQYDSIL 238 (390)
T ss_dssp TTEEEEESSHH
T ss_pred CCEEEEECCHH
Confidence 59999999875
No 45
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=342.15 Aligned_cols=203 Identities=23% Similarity=0.389 Sum_probs=158.8
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
++++|+++.+. .+++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|
T Consensus 4 l~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWA-----------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESC-----------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeC-----------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 67899988652 113579999999999999999999999999999999999987 7899999998
Q ss_pred cccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHH---HHHHcCCC-ccccccccCCCCCCCCHH
Q 043954 544 QKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEE---VIETIELD-DIKDSLVGIPGQSGLSTE 619 (1045)
Q Consensus 544 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~l~L~-~~~~~~vg~~~~~~LSgG 619 (1045)
.++|++|++. ++.+||+||+.++... ..+. .+.+.+ +.+.+++. ...++.++... .+||||
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~LSgG 131 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKG-VNLSGG 131 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTS-BCCCHH
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHHH-HHHHHHHHhhHHHHHhccccccccccCCC-CCCCHH
Confidence 2799999875 4688999999875321 1111 111111 12233322 12233333322 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE
Q 043954 620 QRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVK---NVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII 696 (1045)
Q Consensus 620 qrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~---~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 696 (1045)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|+|++||+++. .+.||++++|+ +|+++
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~--~~~~d~v~~l~-~G~i~ 207 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY--LPQVDVIIVMS-GGKIS 207 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT--GGGSSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH--HHhCCEEEEEe-CCEEE
Confidence 9999999999999999999999999999999999999995 443 48999999999863 46799999998 58999
Q ss_pred EecCCC
Q 043954 697 YSGMLG 702 (1045)
Q Consensus 697 ~~G~~~ 702 (1045)
..|+++
T Consensus 208 ~~g~~~ 213 (237)
T 2cbz_A 208 EMGSYQ 213 (237)
T ss_dssp EEECHH
T ss_pred EeCCHH
Confidence 998753
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.7e-38 Score=415.99 Aligned_cols=252 Identities=25% Similarity=0.355 Sum_probs=195.9
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
.+++..+.+|+.++.+.+++.+........+ +.....++++|++++|+.. +++++|+|||
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~----------~~~~g~i~~~~v~~~y~~~----------~~~~vL~~is 410 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPSIDSFSKSGHKP----------DNIQGNLEFKNIHFSYPSR----------KEVQILKGLN 410 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCSSCCSSCCCC----------TTCCCCEEEEEEEECCSST----------TSCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcCCcccccCCCC----------CCCCCeEEEEEEEEEcCCC----------CCCcceecce
Confidence 4456677889988887655432211000000 0112358999999976421 2356999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
+++++||++||+||||||||||+++|+|.++ |.+|+|.+||+++.. ...++.+|||+|++.+++. ||+||+.++
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g 487 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYG 487 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcC
Confidence 9999999999999999999999999999988 579999999998653 3456779999999988765 999999987
Q ss_pred hhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 574 AWLRLPPEIDSETKARF-----VEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~-----v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
.. ..+.++..+. +++.++ ++++..|+.+|+.|. +||||||||++|||||+++|+||+||||||+||+
T Consensus 488 ~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~ 559 (1284)
T 3g5u_A 488 RE-----DVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559 (1284)
T ss_dssp CS-----SCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCH
T ss_pred CC-----CCCHHHHHHHHHHhCcHHHHH--hccccccccccCCCC-ccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 42 1233322221 122333 356778999998875 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCc
Q 043954 649 RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 703 (1045)
++++.+.+.++++. +|+|+|+++|+++ ....||+|++|+ +|++++.|++++
T Consensus 560 ~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~-~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 560 ESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFD-GGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECS-SSCCCCEECHHH
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE-CCEEEEECCHHH
Confidence 99999999998864 5999999999975 456799999998 599999998753
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.7e-36 Score=334.59 Aligned_cols=196 Identities=22% Similarity=0.410 Sum_probs=149.0
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.++++|+++. .+++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|
T Consensus 40 ~l~~~~l~~~---------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp -------------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEc---------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 4778888862 2469999999999999999999999999999999999987 7899999998
Q ss_pred CcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCC
Q 043954 543 VQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-------IKDSLVGIPGQSG 615 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~ 615 (1045)
.++|++|++.+++. ||+||+. +. . .... .+++.++.+++.+ ..++.++..+ ..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGG-IT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcCcc-Cc
Confidence 37999999888774 9999997 32 1 1111 1233444444432 2233444332 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAV-KNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
||||||||++|||||+.+|++|+|||||+|||+.++..+++.+ +++. +|+|+|++||++. ..+.||++++|+ +|+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~-~G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILH-EGS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEE-CCe
Confidence 9999999999999999999999999999999999999999974 5554 4899999999975 346799999998 589
Q ss_pred EEEecCCC
Q 043954 695 IIYSGMLG 702 (1045)
Q Consensus 695 ~~~~G~~~ 702 (1045)
++..|+++
T Consensus 236 i~~~g~~~ 243 (290)
T 2bbs_A 236 SYFYGTFS 243 (290)
T ss_dssp EEEEECHH
T ss_pred EEEeCCHH
Confidence 99999864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.4e-33 Score=339.02 Aligned_cols=204 Identities=21% Similarity=0.239 Sum_probs=171.0
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. + ..|+++|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.+
T Consensus 356 ~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~---- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW---- 415 (607)
T ss_dssp EEEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----
T ss_pred eEEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----
Confidence 4688899887541 1 36899999999999999999999999999999999887 56898875
Q ss_pred CCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 542 KVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
.+.++|++|+....+.+||.|++....... ....++++++++.+++.+..++.++ .||||||
T Consensus 416 ------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 477 (607)
T 3bk7_A 416 ------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGEL 477 (607)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHH
T ss_pred ------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHH
Confidence 135899999987778899999987531100 0112457889999999988888875 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEec-CcEEEEec
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKA-GGRIIYSG 699 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G 699 (1045)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|+|++|||+. ++...||++++|++ .|+++..|
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g 556 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRAL 556 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecC
Confidence 999999999999999999999999999999999999999974 5999999999976 57788999999972 27788889
Q ss_pred CCCcc
Q 043954 700 MLGRH 704 (1045)
Q Consensus 700 ~~~~~ 704 (1045)
++++.
T Consensus 557 ~p~~~ 561 (607)
T 3bk7_A 557 PPMGM 561 (607)
T ss_dssp CCEEH
T ss_pred CHHHH
Confidence 88653
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.5e-33 Score=333.45 Aligned_cols=217 Identities=23% Similarity=0.268 Sum_probs=173.7
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. + ..|+++|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.
T Consensus 268 ~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~- 330 (538)
T 3ozx_A 268 TKMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ- 330 (538)
T ss_dssp EEEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC-
T ss_pred ceEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe-
Confidence 4578888887542 1 35788899999999999999999999999999999987 57899987652
Q ss_pred CCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 542 KVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
.++|++|+....+.+||+||+.+..... ... ....++++++.+++.+..++.++ .||||||
T Consensus 331 --------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~ 391 (538)
T 3ozx_A 331 --------ILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGEL 391 (538)
T ss_dssp --------CEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHH
T ss_pred --------eeEeechhcccccCCCHHHHHHHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHH
Confidence 4689999877667899999998742111 001 12346788999999988888875 7999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEec-CcEEEEec
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKA-GGRIIYSG 699 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G 699 (1045)
|||+|||||+.+|++|||||||+|||+.++.++++.|+++++ .|.|||++||++. ++...|||+++|++ .|.....+
T Consensus 392 QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~ 470 (538)
T 3ozx_A 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLAT 470 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCC
Confidence 999999999999999999999999999999999999999976 4899999999986 57788999999973 14555566
Q ss_pred CCCcchhHHHHHHhcC
Q 043954 700 MLGRHSSKLIEYFQGI 715 (1045)
Q Consensus 700 ~~~~~~~~~~~~f~~~ 715 (1045)
++........+++...
T Consensus 471 ~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 471 SPVTLKTGMNEFLREL 486 (538)
T ss_dssp CCEEHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhhc
Confidence 6544333445555443
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.4e-33 Score=334.63 Aligned_cols=204 Identities=21% Similarity=0.252 Sum_probs=170.3
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.+. + ..|+++|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.+
T Consensus 286 ~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~---- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW---- 345 (538)
T ss_dssp EEEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----
T ss_pred eEEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----
Confidence 4688899887542 1 36899999999999999999999999999999999887 56898875
Q ss_pred CCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 043954 542 KVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQR 621 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 621 (1045)
...++|++|+....+.+||.|++........ . .++.++++++.+++.+..++.++ .||||||
T Consensus 346 ------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 407 (538)
T 1yqt_A 346 ------DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREVN-----ELSGGEL 407 (538)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHH
T ss_pred ------CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 1358999998877788999998865311110 0 12357788999999888888874 6999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEec-CcEEEEec
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKA-GGRIIYSG 699 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G 699 (1045)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||+. ++...||++++|++ .|+++..|
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g 486 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRAL 486 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecC
Confidence 999999999999999999999999999999999999999874 5999999999976 57789999999973 27888889
Q ss_pred CCCcc
Q 043954 700 MLGRH 704 (1045)
Q Consensus 700 ~~~~~ 704 (1045)
++++.
T Consensus 487 ~~~~~ 491 (538)
T 1yqt_A 487 PPMGM 491 (538)
T ss_dssp CCEEH
T ss_pred CHHHH
Confidence 88653
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.6e-32 Score=324.77 Aligned_cols=201 Identities=19% Similarity=0.223 Sum_probs=162.9
Q ss_pred cccccccceecCc-----eEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCC
Q 043954 490 QLLHDITGAFRPG-----ILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQI 564 (1045)
Q Consensus 490 ~iL~~vs~~i~~G-----e~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 564 (1045)
.+++|+|+++++| |+++|+||||||||||+|+|+|+.+ |.+|+. .. +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------cc----CCcEEEecccccccCCc
Confidence 4789999999998 7899999999999999999999987 457752 11 23579999987766778
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 043954 565 TVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 644 (1045)
Q Consensus 565 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPts 644 (1045)
||+|++.... +. .... .+.++++++.++|.+..++.++ .|||||||||+|||||+.+|++|+|||||+
T Consensus 429 tv~e~~~~~~--~~-~~~~----~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RG-QFLN----PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SS-TTTS----HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hc-cccc----HHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875432 11 1111 2346788999999998888874 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEec-CcEEEEecCCCcchhHHHHHHhcC
Q 043954 645 GLDARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKA-GGRIIYSGMLGRHSSKLIEYFQGI 715 (1045)
Q Consensus 645 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~~~~~~~~~~~f~~~ 715 (1045)
|||+.++..+++.|+++++ +|+|+|++|||+. ++...|||+++|++ .|+++..|++++.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 9999999999999999864 5999999999986 57788999999974 288999999876443333344433
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=2.6e-32 Score=327.04 Aligned_cols=180 Identities=22% Similarity=0.271 Sum_probs=147.4
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE---------EECCeeCCcc-----cccccceEee
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEI---------RVGGYPKVQK-----TFARISGYCE 555 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I---------~~~g~~~~~~-----~~~~~~~~v~ 555 (1045)
.+|+|+| ++++||+++|+||||||||||+|+|+|..+ |.+|++ .++|.+.... ..+..+++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4899999 999999999999999999999999999876 457775 3566543210 1123467888
Q ss_pred cCCccCC---CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 043954 556 QTDIHSP---QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS 632 (1045)
Q Consensus 556 q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~ 632 (1045)
|.....+ ..|+.|++.... .+++++++++.+|+.+..++.++ +|||||||||+|||||+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLR 175 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred hhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhc
Confidence 8643332 238999885311 01236789999999988888874 799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 633 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 633 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+|++|||||||++||+.++..+.+.|++++++|+|+|++||+.. .+...||++++|.
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~ 232 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVY 232 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEc
Confidence 99999999999999999999999999999888999999999975 5778899999997
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=3.5e-32 Score=328.93 Aligned_cols=180 Identities=24% Similarity=0.276 Sum_probs=147.2
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE---------EECCeeCCcc-----cccccceEee
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEI---------RVGGYPKVQK-----TFARISGYCE 555 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I---------~~~g~~~~~~-----~~~~~~~~v~ 555 (1045)
.+|+|+| ++++||+++|+||||||||||+|+|+|..+ |.+|++ .++|.+.... ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 999999999999999999999999999887 457875 3556543210 1123467787
Q ss_pred cCCccCC---CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 043954 556 QTDIHSP---QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS 632 (1045)
Q Consensus 556 q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~ 632 (1045)
|.....+ ..||+||+... .. +++++++++.+||.+..++.++ +|||||||||+|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhc
Confidence 7533222 23999998641 00 1236789999999998888875 799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 633 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 633 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+|++|||||||+|||+.++..+.+.|++++++|+|+|++||++. .+...+|++++|.
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~ 302 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVY 302 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEEC
Confidence 99999999999999999999999999999888999999999975 5677899999997
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2.7e-31 Score=328.40 Aligned_cols=207 Identities=21% Similarity=0.303 Sum_probs=138.1
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHH---------------------HHHhCCCCCC--e---EEEEEEECCee
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLM---------------------DVLSGRKTGG--I---IQGEIRVGGYP 541 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl---------------------~~l~G~~~~~--~---~~G~I~~~g~~ 541 (1045)
++++|+||||+|++||+++|+||||||||||+ +++.|...++ . ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 7777765431 1 14667777765
Q ss_pred CCcccccccceEeecCCc-------------------cCCCCCHHHHHHHHhhhcCCCCCCH------HHHHHHHHHHHH
Q 043954 542 KVQKTFARISGYCEQTDI-------------------HSPQITVEESVKFSAWLRLPPEIDS------ETKARFVEEVIE 596 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~-------------------~~~~lTv~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~ 596 (1045)
... ..++.+++++|... .++.+||+||+.+...+........ ++..+ ..++++
T Consensus 110 ~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 187 (670)
T 3ux8_A 110 TSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRD-RLGFLQ 187 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHH-HHHHHH
T ss_pred hhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHH-HHHHHH
Confidence 432 22344566665432 2356899999987532221110000 00011 124588
Q ss_pred HcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 043954 597 TIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPS--IIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIH 673 (1045)
Q Consensus 597 ~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~--illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H 673 (1045)
.+||.+. .++.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++||
T Consensus 188 ~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 188 NVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 8999765 577774 699999999999999999998 99999999999999999999999999888999999999
Q ss_pred CCcHHHHHhcceEEEEe-----cCcEEEEecCCCc
Q 043954 674 QPSIDVFEAFDELLLMK-----AGGRIIYSGMLGR 703 (1045)
Q Consensus 674 ~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 703 (1045)
++. ....||++++|. ++|++++.|++++
T Consensus 263 d~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 263 DED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp CHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred CHH--HHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 975 456799999992 2689999998753
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=2.1e-30 Score=322.60 Aligned_cols=194 Identities=18% Similarity=0.262 Sum_probs=157.3
Q ss_pred eEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
.+...|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+| |+| +|.+.
T Consensus 435 ~L~~~~ls~~y-------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAY-------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEE-------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 45566777755 24579999999999999999999999999999999995 222 34332
Q ss_pred CcccccccceEeecCC-ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHH
Q 043954 543 VQKTFARISGYCEQTD-IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLVGIPGQSGLSTEQ 620 (1045)
Q Consensus 543 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGq 620 (1045)
.. . ..++|++|+. .+++.+||.||+.+ ... .. +++++++++.+|+. +..++.++ .|||||
T Consensus 492 ~~-~--~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGq 553 (986)
T 2iw3_A 492 QE-E--CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGW 553 (986)
T ss_dssp TT-T--SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHH
T ss_pred cc-c--eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHH
Confidence 11 1 1257888874 67788999999975 111 11 34588899999995 56787775 699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEE-Eec
Q 043954 621 RKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRII-YSG 699 (1045)
Q Consensus 621 rqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 699 (1045)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++ +|+|+|++||+.. .+.+.||++++|+ +|+++ +.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~-~G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYE-GLKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEE-CCeeecCCC
Confidence 9999999999999999999999999999999999999988 5899999999975 5778899999998 58886 678
Q ss_pred CCC
Q 043954 700 MLG 702 (1045)
Q Consensus 700 ~~~ 702 (1045)
+.+
T Consensus 629 ~~~ 631 (986)
T 2iw3_A 629 NFT 631 (986)
T ss_dssp CHH
T ss_pred CHH
Confidence 753
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=4.8e-31 Score=328.45 Aligned_cols=208 Identities=23% Similarity=0.267 Sum_probs=156.5
Q ss_pred eeEEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 462 LTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 462 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++++|+++.++ .+++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~-----------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYP-----------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN- 735 (986)
T ss_dssp EEEEEEEEEECCT-----------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT-
T ss_pred ceEEEEeeEEEeC-----------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc-
Confidence 3588999988542 123579999999999999999999999999999999999987 57999999862
Q ss_pred CCcccccccceEeecCCcc----CCCCCHHHHHHHHhhhcC------------C--------------------------
Q 043954 542 KVQKTFARISGYCEQTDIH----SPQITVEESVKFSAWLRL------------P-------------------------- 579 (1045)
Q Consensus 542 ~~~~~~~~~~~~v~q~~~~----~~~lTv~e~l~~~~~~~~------------~-------------------------- 579 (1045)
..++|++|+..+ ....|++|++.+...... .
T Consensus 736 -------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r 808 (986)
T 2iw3_A 736 -------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSR 808 (986)
T ss_dssp -------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEE
T ss_pred -------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhh
Confidence 135777775421 123566666654210000 0
Q ss_pred --------------------------CCC----------------------------------CHHHHHHHHHHHHHHcC
Q 043954 580 --------------------------PEI----------------------------------DSETKARFVEEVIETIE 599 (1045)
Q Consensus 580 --------------------------~~~----------------------------------~~~~~~~~v~~~l~~l~ 599 (1045)
... .....+++++++++.+|
T Consensus 809 ~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lG 888 (986)
T 2iw3_A 809 RKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLG 888 (986)
T ss_dssp EEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred hhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcC
Confidence 000 00001245788999999
Q ss_pred CCcc--ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 043954 600 LDDI--KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSI 677 (1045)
Q Consensus 600 L~~~--~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 677 (1045)
|.+. .++.++ +|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++||++.
T Consensus 889 L~~~~~~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e- 959 (986)
T 2iw3_A 889 LDPEIVSHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE- 959 (986)
T ss_dssp CCHHHHHHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-
T ss_pred CCchhhcCCCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-
Confidence 9753 466664 79999999999999999999999999999999999999999988764 679999999975
Q ss_pred HHHHhcceEEEEecCcEEEEecC
Q 043954 678 DVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 678 ~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
.+.+.||++++|+ +|+++..|+
T Consensus 960 ~v~~l~DrVivL~-~G~Iv~~G~ 981 (986)
T 2iw3_A 960 FTKNLTEEVWAVK-DGRMTPSGH 981 (986)
T ss_dssp HHTTTCCEEECCB-TTBCCC---
T ss_pred HHHHhCCEEEEEE-CCEEEEeCC
Confidence 4667899999997 588887764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.1e-29 Score=314.09 Aligned_cols=194 Identities=24% Similarity=0.334 Sum_probs=145.2
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHh----------------------CCCCCCeEEEEEEECCeeCCccc
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLS----------------------GRKTGGIIQGEIRVGGYPKVQKT 546 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~----------------------G~~~~~~~~G~I~~~g~~~~~~~ 546 (1045)
+.+|+|||++|++||+++|+||||||||||+|+|. |.. +..|.|.++|.+.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCCC
Confidence 46899999999999999999999999999998764 211 12467888887642110
Q ss_pred c---c-----------------------------------------ccceEeecCCccC---------------------
Q 043954 547 F---A-----------------------------------------RISGYCEQTDIHS--------------------- 561 (1045)
Q Consensus 547 ~---~-----------------------------------------~~~~~v~q~~~~~--------------------- 561 (1045)
. . +..|++.|+..++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 0 0 0012233222221
Q ss_pred -----------CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 043954 562 -----------PQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQRKRLTIAVE 629 (1045)
Q Consensus 562 -----------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~ia~a 629 (1045)
..+||+||+.+.... . ..+++.+.++.+++.+ ..++.++ .|||||||||+||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAE 557 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCch-----hCCHHHHHHHHHHHH
Confidence 257999999875321 1 1234567788899864 3456553 799999999999999
Q ss_pred HhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCC
Q 043954 630 LVSNP---SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGML 701 (1045)
Q Consensus 630 L~~~p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~ 701 (1045)
|+.+| ++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ..+.||++++|. ++|++++.|++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCCCEEEEecCH
Confidence 99887 599999999999999999999999999888999999999975 457899999993 26999999986
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.5e-29 Score=302.17 Aligned_cols=173 Identities=20% Similarity=0.265 Sum_probs=136.6
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE-----------EECCeeCCcc---------cccccceEeecCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEI-----------RVGGYPKVQK---------TFARISGYCEQTD 558 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I-----------~~~g~~~~~~---------~~~~~~~~v~q~~ 558 (1045)
.++||++||+||||||||||+|+|+|..+ |.+|+| .++|.++... .......++.+.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 46999999999999999999999999887 567888 5666554210 0111233443333
Q ss_pred ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEE
Q 043954 559 IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIF 638 (1045)
Q Consensus 559 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~ill 638 (1045)
.+. ..|++|++.-.. .+++++++++.+++.+..++.++ .|||||||||+|||||+.+|++|+
T Consensus 100 ~~~-~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KFL-KGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TTC-CSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhc-cCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 332 348888764211 01236788999999998898885 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 639 MDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 639 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|||||++||+.++..+.+.|+++++ |+|||+++|++. ++...||++++|. +|.
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~-~~~ 214 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIY-GES 214 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEE-EET
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEec-CCc
Confidence 9999999999999999999999965 999999999986 6788999999997 443
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-29 Score=303.48 Aligned_cols=188 Identities=22% Similarity=0.318 Sum_probs=140.8
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-----------ECCeeCCc---ccccccc--eE
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIR-----------VGGYPKVQ---KTFARIS--GY 553 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~-----------~~g~~~~~---~~~~~~~--~~ 553 (1045)
..|++++ .+++||+++|+||||||||||||+|+|+.+ |.+|+|. +.|.+... ....+.+ .+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3577777 689999999999999999999999999887 5678872 22222110 0000111 12
Q ss_pred eecCCcc------CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH
Q 043954 554 CEQTDIH------SPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIA 627 (1045)
Q Consensus 554 v~q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia 627 (1045)
.+|.... -+..++.+++.... .. .+++++++++.+||.+..++.++ .|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHH
Confidence 2221110 12235666554321 11 12457889999999998998874 7999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEE
Q 043954 628 VELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIY 697 (1045)
Q Consensus 628 ~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 697 (1045)
|||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++...+|++++|. +|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~-~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIY-GVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEE-SCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcccc
Confidence 9999999999999999999999999999999999888999999999986 6788999999997 455444
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=9.5e-28 Score=296.19 Aligned_cols=196 Identities=26% Similarity=0.395 Sum_probs=150.1
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHh-C----C-----CCCC---eEEE------EEEECCeeCCccc----
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLS-G----R-----KTGG---IIQG------EIRVGGYPKVQKT---- 546 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~-G----~-----~~~~---~~~G------~I~~~g~~~~~~~---- 546 (1045)
..|+|||++|++||+++|+|+||||||||+++|. | . ..++ ...| .|.++|.++....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 3699999999999999999999999999999864 2 1 1122 1234 5888887752100
Q ss_pred ------------------ccccceEeecCCccC----------------------C------------------------
Q 043954 547 ------------------FARISGYCEQTDIHS----------------------P------------------------ 562 (1045)
Q Consensus 547 ------------------~~~~~~~v~q~~~~~----------------------~------------------------ 562 (1045)
..+..||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 013357776642221 1
Q ss_pred --------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 043954 563 --------QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQRKRLTIAVELVSN 633 (1045)
Q Consensus 563 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~ 633 (1045)
.+||.|++.|... . .. .+++.++++.+||.. ..+..++ .|||||||||+||++|+++
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcC
Confidence 4578888776421 1 11 223567899999986 5666664 7999999999999999987
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCC
Q 043954 634 P---SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGML 701 (1045)
Q Consensus 634 p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~ 701 (1045)
| ++|||||||+|||+.++..+++.|++++++|.|||+++|++. ..+.||++++|. ++|++++.|++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 5 999999999999999999999999999988999999999965 457899999994 36999999975
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=8.3e-28 Score=299.63 Aligned_cols=198 Identities=25% Similarity=0.409 Sum_probs=147.5
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHH---------HHHhCCCC-CC---eEEE------EEEECCeeCCccc---
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLM---------DVLSGRKT-GG---IIQG------EIRVGGYPKVQKT--- 546 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl---------~~l~G~~~-~~---~~~G------~I~~~g~~~~~~~--- 546 (1045)
...|+|||++|++||+++|+||||||||||+ +.+.|... .+ +.+| .+.+++.++....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 44444221 11 2233 3555554421100
Q ss_pred -----------------------------------------ccccceEeecCCccCC-----------------------
Q 043954 547 -----------------------------------------FARISGYCEQTDIHSP----------------------- 562 (1045)
Q Consensus 547 -----------------------------------------~~~~~~~v~q~~~~~~----------------------- 562 (1045)
..+..|++.++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0012366666655544
Q ss_pred ---------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 043954 563 ---------QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVS 632 (1045)
Q Consensus 563 ---------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~ 632 (1045)
.+||.|++.|... . ...+++.++++.+||... .+..+ .+|||||||||+|||||++
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhh
Confidence 3688888887431 1 122446788999999642 23333 4799999999999999998
Q ss_pred CC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCC
Q 043954 633 NP---SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLG 702 (1045)
Q Consensus 633 ~p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 702 (1045)
+| +||||||||+|||+.+++.+++.|++++++|.|||+++|+++ +.+.||+|++|. ++|++++.|+++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 76 799999999999999999999999999988999999999974 567799999992 379999999874
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=1.9e-27 Score=294.13 Aligned_cols=195 Identities=26% Similarity=0.391 Sum_probs=145.5
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHH-HhCCC-------CC----------------CeEEE-------EEEECC
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDV-LSGRK-------TG----------------GIIQG-------EIRVGG 539 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~-l~G~~-------~~----------------~~~~G-------~I~~~g 539 (1045)
.|+|||++|++||+++|+|+||||||||++. |+|.. .+ .+.+| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 76432 11 13577 789998
Q ss_pred eeCCccc-------------cc---------ccceEeec----------------------CCccC--------------
Q 043954 540 YPKVQKT-------------FA---------RISGYCEQ----------------------TDIHS-------------- 561 (1045)
Q Consensus 540 ~~~~~~~-------------~~---------~~~~~v~q----------------------~~~~~-------------- 561 (1045)
.++.... .+ +..||.++ +..++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 7753110 00 11223221 11111
Q ss_pred ----------CC--------CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHH
Q 043954 562 ----------PQ--------ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRK 622 (1045)
Q Consensus 562 ----------~~--------lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrq 622 (1045)
.. +|+.|++.|.. . .. ..+++.++++.++|... .++.++ .|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~~--~~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-ES--AIFRALDTLREVGLGYLRLGQPAT-----ELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-SH--HHHHHHHHHHHTTCTTSBTTCCGG-----GCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-ch--HHHHHHHHHHHcCCCcccccCCcc-----cCCHHHHH
Confidence 12 34555544421 1 11 22457889999999863 466653 79999999
Q ss_pred HHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcE
Q 043954 623 RLTIAVELVSN---PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGR 694 (1045)
Q Consensus 623 Rv~ia~aL~~~---p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~ 694 (1045)
||+||++|+++ |+||||||||+|||+.+...+.+.|++++++|.|||+++|++. ..+.||++++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999988999999999975 348899999994 3689
Q ss_pred EEEecCC
Q 043954 695 IIYSGML 701 (1045)
Q Consensus 695 ~~~~G~~ 701 (1045)
+++.|++
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999975
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.94 E-value=4.2e-27 Score=291.62 Aligned_cols=196 Identities=25% Similarity=0.387 Sum_probs=146.5
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHh-C----CC-----CCCe---EEE------EEEECCeeCCcc---c--
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLS-G----RK-----TGGI---IQG------EIRVGGYPKVQK---T-- 546 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~-G----~~-----~~~~---~~G------~I~~~g~~~~~~---~-- 546 (1045)
.|+|||++|++||+++|+|+||||||||+++|. | .. .++. ..| .|.+++.++... .
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 699999999999999999999999999999853 2 11 1111 123 356666554210 0
Q ss_pred -----------------ccccceEeecCCcc----------------------CC-------------------------
Q 043954 547 -----------------FARISGYCEQTDIH----------------------SP------------------------- 562 (1045)
Q Consensus 547 -----------------~~~~~~~v~q~~~~----------------------~~------------------------- 562 (1045)
..+..||++|...+ ++
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 01335676664221 11
Q ss_pred -------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 043954 563 -------QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQRKRLTIAVELVSNP 634 (1045)
Q Consensus 563 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p 634 (1045)
.+||.|++.|... . .. .+++.++++.+||.. ..+..++ .|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLGQPAP-----TLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTTCCGG-----GSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCcccccCccc-----cCCHHHHHHHHHHHHHHhCC
Confidence 3577777776321 1 11 223568899999976 5566653 79999999999999999875
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCC
Q 043954 635 ---SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLG 702 (1045)
Q Consensus 635 ---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 702 (1045)
++|||||||+|||+.+...+++.|++++++|.|||+++|++. ..+.||++++|. ++|++++.|+++
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~~ 956 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTPE 956 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999965 457899999994 469999999863
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.4e-29 Score=289.45 Aligned_cols=196 Identities=15% Similarity=0.097 Sum_probs=150.2
Q ss_pred ccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-E-EEECCeeCCcccccccceEeecCCc---cCCCCCHH
Q 043954 493 HDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQG-E-IRVGGYPKVQKTFARISGYCEQTDI---HSPQITVE 567 (1045)
Q Consensus 493 ~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G-~-I~~~g~~~~~~~~~~~~~~v~q~~~---~~~~lTv~ 567 (1045)
.++|+++++||+++|+||||||||||+|+|+|+.. +.+| + |.+||. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 47999999999999999999999999999999987 6789 8 999982 2466899999873 45567999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCe----EEEeC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVE--LVSNPSI----IFMDE 641 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~a--L~~~p~i----llLDE 641 (1045)
||+ ++........ . +++++++++.+|+.+..+ . .+|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~~-~----~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGAT-L----LHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSCC-S----SCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCcc-h----HHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 6543211110 0 122455677788877655 2 3699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc--H---HHHHhcce-----EEEEecCcEEEEecCCCcc----hh
Q 043954 642 -PTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS--I---DVFEAFDE-----LLLMKAGGRIIYSGMLGRH----SS 706 (1045)
Q Consensus 642 -PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~--~---~~~~~~d~-----v~~l~~gG~~~~~G~~~~~----~~ 706 (1045)
||++||+. ...+.+.+++ .++|+|+++|+.+ . ++.+.+|+ +++|+++|+++ .|++++. ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 5555555544 3789999999976 2 34578999 99997357888 8876432 12
Q ss_pred HHHHHHhc
Q 043954 707 KLIEYFQG 714 (1045)
Q Consensus 707 ~~~~~f~~ 714 (1045)
.+.+||.+
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 45567754
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.93 E-value=1.1e-25 Score=263.37 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=142.9
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCC------------------------------------CeEE
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTG------------------------------------GIIQ 532 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~------------------------------------~~~~ 532 (1045)
..+++++|+++++| +++|+|||||||||||++|.+.... .+.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 9999999999999999999664421 0126
Q ss_pred EEEEECCeeCCccc---cc-ccceEeecCCccCCCCCHHHHHHHHhhhcC-----------------------CCCC---
Q 043954 533 GEIRVGGYPKVQKT---FA-RISGYCEQTDIHSPQITVEESVKFSAWLRL-----------------------PPEI--- 582 (1045)
Q Consensus 533 G~I~~~g~~~~~~~---~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----------------------~~~~--- 582 (1045)
|++.+||++..... .. ..+++++|++.+... +..+...|...... ....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 89999999875422 22 336889998765433 55544443211100 0000
Q ss_pred -C------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccCCC
Q 043954 583 -D------------------------------SETKARFVEEVIETIELDDIK----------------DS---LVGIPG 612 (1045)
Q Consensus 583 -~------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~~---~vg~~~ 612 (1045)
. .+...+.+++.++.+++.+.. +. .++..+
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 000112344555556554310 00 111100
Q ss_pred ------CCC-CCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhc
Q 043954 613 ------QSG-LSTEQRKRLTIAVELVSNP--SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAF 683 (1045)
Q Consensus 613 ------~~~-LSgGqrqRv~ia~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 683 (1045)
.+. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|+|||++||++ ++.+.|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 011 7999999999999999999 9999999999999999999999999997 589999999996 467899
Q ss_pred ceEEEE----ecCcEEEEec
Q 043954 684 DELLLM----KAGGRIIYSG 699 (1045)
Q Consensus 684 d~v~~l----~~gG~~~~~G 699 (1045)
|++++| + +|+++...
T Consensus 363 d~i~~l~k~~~-~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVE-DGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEE-TTEEEEEE
T ss_pred CeEEEEEEecc-CCceEEEE
Confidence 999999 6 47876553
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=6.3e-27 Score=246.08 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=101.4
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCH
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
+++.+|+|+ ++||+++|+||||||||||+|+|+|. + |.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 456799996 89999999999999999999999999 6 56787732111111123456789999965
Q ss_pred HHHH-HHHh----hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 043954 567 EESV-KFSA----WLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDE 641 (1045)
Q Consensus 567 ~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDE 641 (1045)
+||+ .+.. .+.. ... .+.++++++. + | |||||++|||||+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4555 2211 1110 001 1234455542 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 642 PTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 642 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
||+| ++..+.+.|+++ ++|+|+| +||+++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888999999998 6689999 999965
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=2e-22 Score=230.43 Aligned_cols=81 Identities=27% Similarity=0.435 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEE
Q 043954 614 SGLSTEQRKRLTIAVELV------SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.++|+|||++||++. ..+.+|+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~~ 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRKL 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEEE
Confidence 369999999999999999 799999999999999999999999999999888999999999974 478899999
Q ss_pred EEecCcEEEE
Q 043954 688 LMKAGGRIIY 697 (1045)
Q Consensus 688 ~l~~gG~~~~ 697 (1045)
+|+ +|+++.
T Consensus 356 ~l~-~G~i~~ 364 (365)
T 3qf7_A 356 RIT-GGVVVN 364 (365)
T ss_dssp EEE-TTEEC-
T ss_pred EEE-CCEEEe
Confidence 998 588864
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=6.3e-23 Score=231.25 Aligned_cols=86 Identities=24% Similarity=0.210 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceE--E
Q 043954 614 SGLSTEQRKRLTIAVELV----SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDEL--L 687 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v--~ 687 (1045)
..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|+++. +|.++|++||++. +.+.||++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 369999999999999997 6889999999999999999999999999984 5889999999964 67889986 7
Q ss_pred EEecCcEEEEecCCC
Q 043954 688 LMKAGGRIIYSGMLG 702 (1045)
Q Consensus 688 ~l~~gG~~~~~G~~~ 702 (1045)
+|.+|...+.....+
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 887666666665543
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=6.5e-24 Score=216.84 Aligned_cols=143 Identities=14% Similarity=0.175 Sum_probs=100.7
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccC-CCCCHHHHHHH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHS-PQITVEESVKF 572 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~-~~lTv~e~l~~ 572 (1045)
|||+++++||+++|+||||||||||+|++.+-.. .+++ ....++++|+.... ...++.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~--------d~~~g~~~~~~~~~~~~~~~~~~~-- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS--------DFCRGLMSDDENDQTVTGAAFDVL-- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH--------HHHHHHHCSSTTCGGGHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc--------HHHHHHhcCcccchhhHHHHHHHH--
Confidence 6899999999999999999999999999764221 1110 11236777753210 000111111
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH---
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDAR--- 649 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~--- 649 (1045)
...... ....+.....+.. ...|||||||++|||+++.+|++|+|||||++||+.
T Consensus 63 ---------------~~~~~~-~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 63 ---------------HYIVSK-RLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ---------------HHHHHH-HHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ---------------HHHHHH-HHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111111 2223444333332 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 650 -------------AAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 650 -------------~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
....+.+.|++++++|.|+|++||+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558999999998878999999999964
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=6.8e-25 Score=252.21 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=136.6
Q ss_pred ccccccccceecCce--------------------EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccccc
Q 043954 489 LQLLHDITGAFRPGI--------------------LTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFA 548 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge--------------------~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~ 548 (1045)
+.+|+|||+++++|| ++||+||||||||||+|+|+|+.+ +.+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc----e
Confidence 468999999999999 999999999999999999999887 56899999987642 1
Q ss_pred ccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHH
Q 043954 549 RISGYCEQTDIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE--QRKRLTI 626 (1045)
Q Consensus 549 ~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG--qrqRv~i 626 (1045)
.++++|++ .++.+|+.||+.+.. + +..++++++.+++.+. +..+ .|||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~-~~~~------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEY-DFFI------IISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGC-SEEE------EEESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCcc-CCeE------EeCCCCccHHHHHH
Confidence 27899974 567889998875532 0 1236788888888764 3332 28999 9999999
Q ss_pred HHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEecCCcH-HHHHhcceE
Q 043954 627 AVELVS----------NPSIIFMDEPTSGLDARAAAIVMRAVKNVV-----RTG----RTTVCTIHQPSI-DVFEAFDEL 686 (1045)
Q Consensus 627 a~aL~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tvi~~~H~~~~-~~~~~~d~v 686 (1045)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .++++++|+.+. ++.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999985 323 678889998762 266677776
Q ss_pred E
Q 043954 687 L 687 (1045)
Q Consensus 687 ~ 687 (1045)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.85 E-value=1.7e-22 Score=207.34 Aligned_cols=147 Identities=18% Similarity=0.159 Sum_probs=100.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccccceEeecCCccCCCCCHHHHHHHHhhhcCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP 580 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~ 580 (1045)
.++|+||||||||||+|+|+|... |.++|.+.... ..++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 589999999999999999999764 22333322111 2345689999965 222332 1 11000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCHHHHHH
Q 043954 581 EIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVE-----LVSNPSIIFMDE--PTSGLDARAAAI 653 (1045)
Q Consensus 581 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~a-----L~~~p~illLDE--PtsgLD~~~~~~ 653 (1045)
.-.+..+..+ ..||||||||++||++ |+.+|++++||| ||++||+...+.
T Consensus 65 ------------------~~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 ------------------TSKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ------------------CCSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ------------------Cccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0001233333 3699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEec--CCcHHHHHhcceEEEEecCcEEEEe
Q 043954 654 VMRAVKNVVRTGRTTVCTIH--QPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 654 i~~~l~~l~~~g~tvi~~~H--~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
+.+.+++ .+.|+|+++| +....+.+.+|+ .+|+++..
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r-----~~~~i~~~ 160 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL-----PGAVLIEL 160 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC-----TTCEEEEC
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc-----CCcEEEEe
Confidence 9988875 4677999997 233356667787 35676653
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.84 E-value=1.1e-24 Score=229.74 Aligned_cols=185 Identities=12% Similarity=0.028 Sum_probs=116.5
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
...+++| .++++||+++|+||||||||||+|+|+|+.+ ...+.+.+.+.+.. ...++.++|++|+...++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 3567888 6999999999999999999999999999875 23333323222211 12245689999988777777877
Q ss_pred HHHHHHhhhcC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEE
Q 043954 568 ESVKFSAWLRL---PPEIDSETKARFVEEV------IETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIF 638 (1045)
Q Consensus 568 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~ill 638 (1045)
|++........ ....+.++.++++++. ++.+|+.+..+... +.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 77632111100 0012233334444443 33334433333333 2455 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHHhcceEEEEecCcE
Q 043954 639 MDEPTSGL----DARAAAIVMRAVKNVVR-TGRTTVCTIHQPSIDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 639 LDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 694 (1045)
|||||+|+ |+..+.++.+.++++.+ .|.|+|+++|+++ ++.+.||++++|.+.|+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 99999998 78899999999999975 4899999999986 68889999999965443
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.83 E-value=2.9e-24 Score=237.18 Aligned_cols=203 Identities=12% Similarity=0.124 Sum_probs=140.9
Q ss_pred CcccccchhhhccccCCcccCCCCCCCCCCCCcccccCCcccccceeEEEeceEEEEecCcccccccccccccccccccc
Q 043954 417 MSRAIISKERFSQLQGKEDEESNRPAFPHTKSESKISGMVLPFEQLTMAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDIT 496 (1045)
Q Consensus 417 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs 496 (1045)
++++..+.+|+.++++.+++.... +. .. +.....++++||++.+ + +++|+|+|
T Consensus 68 ~~~a~~a~~ri~~~l~~~~~~~~~---~~-~~---------~~~~~~i~~~~vs~~y-------------~-~~vL~~vs 120 (305)
T 2v9p_A 68 YLRAETQALSMPAYIKARCKLATG---EG-SW---------KSILTFFNYQNIELIT-------------F-INALKLWL 120 (305)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHCCS---SC-CT---------HHHHHHHHHTTCCHHH-------------H-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCC---CC-cc---------cccCCeEEEEEEEEEc-------------C-hhhhccce
Confidence 345667788888877654332110 00 00 0001135678887633 2 46999999
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH-HHHHHhh
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE-SVKFSAW 575 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e-~l~~~~~ 575 (1045)
++|++||+++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++| |+.+..
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~~ni~~~~- 178 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLADTRAALVD- 178 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTTCSCEEEE-
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHHHhhccCc-
Confidence 999999999999999999999999999987 3666 346777766655 47776 776531
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 043954 576 LRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVM 655 (1045)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~ 655 (1045)
..+. .+++.++.+ |++..| | ..|||||||| ||||+++|+||| ||+||+.++..+.
T Consensus 179 -----~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 179 -----DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp -----EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred -----cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 1121 245566654 555555 2 4799999999 999999999999 9999999998886
Q ss_pred HHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCCcchhHHHHHHhcC
Q 043954 656 RAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLGRHSSKLIEYFQGI 715 (1045)
Q Consensus 656 ~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~ 715 (1045)
. .+|+++ ..+.+|++ +|+ +|++++.|+++ ++...|..+
T Consensus 234 ~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~~----el~~~y~~l 271 (305)
T 2v9p_A 234 Y--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITDA----DWKSFFVRL 271 (305)
T ss_dssp G--------------GTTTEE--EEECCCCC-CCC----CCCCCCHH----HHHHHHHHS
T ss_pred H--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCHH----HHHHHHHHH
Confidence 2 188875 46789999 997 59999999863 345556554
No 74
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.81 E-value=2.2e-22 Score=220.28 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=97.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPEID 583 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 583 (1045)
.++|+||||||||||+|+|+|... +.+|+|.++|.+......++.++|++|++.+.+.+||.||+.|+...... . .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~-~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-N-C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-T-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-H-H
Confidence 489999999999999999999876 57899999998875444556789999999999999999999887543211 1 1
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 043954 584 SETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR 663 (1045)
Q Consensus 584 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~ 663 (1045)
. +.+.+.++ .+..+...+ +||||||||+++||+++. +++|||||+|||+.. .+.++++.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12333332 223344443 699999999999999875 999999999999987 455666665
Q ss_pred cCCEEEEEecCC
Q 043954 664 TGRTTVCTIHQP 675 (1045)
Q Consensus 664 ~g~tvi~~~H~~ 675 (1045)
. .++|+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999874
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.80 E-value=2.3e-21 Score=215.36 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=121.4
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cc--cccceEeecCCc-cC
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-------TF--ARISGYCEQTDI-HS 561 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~ 561 (1045)
++++|+++++|++++|+||||||||||++.|+|..+ +.+|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 467899999999999999999999999999999876 4579999999875421 12 235899999888 88
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--eEEE
Q 043954 562 PQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPS--IIFM 639 (1045)
Q Consensus 562 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~--illL 639 (1045)
+.+|++||+.++.... .+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 8899999998754211 00 124566777776666664 599 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 043954 640 DEPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQ 674 (1045)
Q Consensus 640 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~ 674 (1045)
| ||+|||+..+ ++++.+ .|.|+|++||.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9 9999999865 345543 48999999994
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.80 E-value=3.7e-19 Score=220.21 Aligned_cols=108 Identities=28% Similarity=0.415 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 043954 588 ARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSNP--SIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664 (1045)
Q Consensus 588 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 664 (1045)
.++++ .++.+||.+. .++.++ .|||||||||+||++|..+| ++|+|||||+|||+...+.+.+.|+++++.
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~ 430 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG 430 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc
Confidence 34454 5778899865 677764 79999999999999999999 599999999999999999999999999888
Q ss_pred CCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCCc
Q 043954 665 GRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLGR 703 (1045)
Q Consensus 665 g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 703 (1045)
|.|||+++|++. +.+.+|++++|. ++|++++.|++++
T Consensus 431 G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 431 GNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp TCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence 999999999964 678899999994 4799999999865
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.79 E-value=7.9e-21 Score=213.98 Aligned_cols=130 Identities=19% Similarity=0.152 Sum_probs=104.0
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccccceEeecCCccCCCCCHHH
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-TFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
++++++|+.+++|++++|+||||||||||+|+|+|..+ +.+|.|.++|.+.... ..++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe-------------
Confidence 38999999999999999999999999999999999887 4689999998641110 0111122211
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
+ |||+||++|||||..+|++++|||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 649 RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
.++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~ 289 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSS 289 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhc
Confidence 2356777777543458999999987 6788999999985
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.79 E-value=3.2e-23 Score=220.27 Aligned_cols=155 Identities=10% Similarity=0.001 Sum_probs=99.3
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccccceEeecCCccCCCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK----TFARISGYCEQTDIHSPQI 564 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~----~~~~~~~~v~q~~~~~~~l 564 (1045)
..-|+|||+++++|++++|+||||||||||+|+|+|..+ |+|.+ |.+.... ..++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 346999999999999999999999999999999999772 77888 7654221 1345689999976555433
Q ss_pred CH-HHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCeE
Q 043954 565 TV-EESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTI-----AVELVSNPSII 637 (1045)
Q Consensus 565 Tv-~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~i-----a~aL~~~p~il 637 (1045)
+. .+++.+. ..... ..... +.++++++..++ ..+. ..||||||||++| +|+++.+|+++
T Consensus 84 ~~~~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYD-NYANNFYGTLK----SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEE-EETTEEEEEEH----HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhh-hcccccCCCcH----HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 21 1111100 00000 00111 235666664332 1221 2699999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH
Q 043954 638 FMDEPTSGLDARAAAIVMRAVKNVVR 663 (1045)
Q Consensus 638 lLDEPtsgLD~~~~~~i~~~l~~l~~ 663 (1045)
+|||||+++|..+...+.+.|+++.+
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999988654
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.77 E-value=1.6e-20 Score=212.26 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=122.2
Q ss_pred ccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cc--cccceEeecCCc-cCC
Q 043954 493 HDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-------TF--ARISGYCEQTDI-HSP 562 (1045)
Q Consensus 493 ~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~~ 562 (1045)
+++|+++++|++++|+||||||||||++.|+|..+ +.+|+|.++|.+.... .+ ++.++|++|++. ..+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 56899999999999999999999999999999876 4579999999875421 11 345899999887 888
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--eEEEe
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPS--IIFMD 640 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~--illLD 640 (1045)
.+|++||+.++.... .+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999998764211 10 124566777776666664 589 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 043954 641 EPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQ 674 (1045)
Q Consensus 641 EPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~ 674 (1045)
||+|||+.++. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 34443 48999999994
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.77 E-value=5.9e-21 Score=222.37 Aligned_cols=174 Identities=16% Similarity=0.100 Sum_probs=136.5
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe---eCCc--------ccccccceEeecC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY---PKVQ--------KTFARISGYCEQT 557 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~---~~~~--------~~~~~~~~~v~q~ 557 (1045)
..+|+++ +.+.+||+++|+||||||||||+++|+|..+ +..|.|.++|+ +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 5699999 9999999999999999999999999999877 56899999998 3321 1245668999994
Q ss_pred -CccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCe
Q 043954 558 -DIHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSI 636 (1045)
Q Consensus 558 -~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~i 636 (1045)
+..++.+|+.+|+.+.+...... .+ ......|. + ..+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld~-l-----~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMDS-L-----TRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEEC-H-----HHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHHh-H-----HHHHHHH-HHHHHH---hCCCcc
Confidence 56677889999988754321000 00 01111222 1 3599999 999999 889998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 637 IFMDEPTSGLDARAAAIVMRAVKNVVR---T-GR-----TTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 637 llLDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
|+|||+.+...+.++++++.+ + |+ ||++++|+.+ ...+|++++|. +|+++..|++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~-dG~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAIL-DGHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHS-SEEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEe-CcEEEEeCCH
Confidence 999999999999999999866 3 64 8999999986 46789999998 5999998864
No 81
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.76 E-value=4.7e-18 Score=192.74 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=68.4
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEE
Q 043954 614 SGLSTEQRK------RLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 614 ~~LSgGqrq------Rv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|+|+|++||++ ++.+.||+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEEE
Confidence 469999999 67788888889999999999999999999999999999887789999999995 4678999999
Q ss_pred EEe
Q 043954 688 LMK 690 (1045)
Q Consensus 688 ~l~ 690 (1045)
+|.
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 82
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.76 E-value=2.6e-19 Score=199.32 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=118.6
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQG-EIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G-~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
.++|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.+......++.+..+.++.. +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 458999999999999999999999999999999999764 2346 66554433322222222233333221 1223
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCCeEEEeCCCC--
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ-RKRLTIAVELVSNPSIIFMDEPTS-- 644 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq-rqRv~ia~aL~~~p~illLDEPts-- 644 (1045)
+++.... + +.++.++.++++++..++. ..+. . .++|.+| +||+. |+++..+|+++++||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~-~-----~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS-F-----AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC-C-----CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC-C-----CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4443321 1 1222233344444322221 1111 1 2589999 66776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHc-CCEEEEEecCCc-H--------------------HHHHhcceEEEEecCcE
Q 043954 645 -G---LDA-RAAAIVMRAVKNVVRT-GRTTVCTIHQPS-I--------------------DVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 645 -g---LD~-~~~~~i~~~l~~l~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~v~~l~~gG~ 694 (1045)
+ +|. ....++.+.|++++++ |.|||+++|+.. . .+...||++++|.+ |+
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~ 236 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQ 236 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Cc
Confidence 5 555 6678899999999865 999999999952 2 46678999999985 54
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.75 E-value=2.8e-18 Score=194.32 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcce
Q 043954 615 GLSTEQRKRLTIAVELV---------SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDE 685 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 685 (1045)
.||||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|++||. . + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 59999999999999999 8999999999999999999999999998863 688889994 3 2 8999
Q ss_pred EEEEecCcEEEEecCCCc
Q 043954 686 LLLMKAGGRIIYSGMLGR 703 (1045)
Q Consensus 686 v~~l~~gG~~~~~G~~~~ 703 (1045)
+++++ +|+++..|++++
T Consensus 337 i~~l~-~G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQ-AGRFTPVADEEM 353 (359)
T ss_dssp EEEEE-TTEEEECCCTTT
T ss_pred EEEEE-CCEEEecCCHHH
Confidence 99998 599999998753
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.74 E-value=1.8e-20 Score=209.12 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=95.9
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRL 578 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~ 578 (1045)
+++|+++||+||||||||||+++|+|..++ . +|. +.+++++|++.+++. |++||+.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 899999999999999999999999997753 2 221 347999999988888 999998642211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 579 PPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 579 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
........+.+.+.++.++ .+..+..+. .|||||+||+++|++++.+|+|||||||++.+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACAP-----VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEEE-----EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCcc-----cCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1111222345677888887 444445553 6999999999999999999999999999999986
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.73 E-value=1.8e-18 Score=215.84 Aligned_cols=163 Identities=20% Similarity=0.318 Sum_probs=121.7
Q ss_pred HHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCC-CC-H---HHHHHH
Q 043954 516 TTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPE-ID-S---ETKARF 590 (1045)
Q Consensus 516 STLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-~~-~---~~~~~~ 590 (1045)
+|...|..+++. +..|+|.++|+++.. +..+|+.|++.+...+..... .. . ....+.
T Consensus 382 ~~C~~C~g~rl~--~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (916)
T 3pih_A 382 RTCSVCGGRRLN--REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEK 443 (916)
T ss_dssp EECTTTCSCCBC--TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHH
T ss_pred ccchhcccccCC--hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHH
Confidence 445555555665 457999999987532 123467777776543322211 00 0 011122
Q ss_pred HHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 043954 591 VEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPS--IIFMDEPTSGLDARAAAIVMRAVKNVVRTGRT 667 (1045)
Q Consensus 591 v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~--illLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 667 (1045)
..+.+..+||... .++.++ +|||||||||+|||||+++|+ +|+|||||+|||+.....+++.|++++++|.|
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~T 518 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNT 518 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred HHHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCE
Confidence 4466778899764 577664 799999999999999999887 99999999999999999999999999888999
Q ss_pred EEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCCc
Q 043954 668 TVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLGR 703 (1045)
Q Consensus 668 vi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 703 (1045)
||+++|++ +....+|++++|. ++|++++.|++++
T Consensus 519 vivVtHd~--~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 519 VIVVEHDE--EVIRNADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp EEEECCCH--HHHHTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred EEEEeCCH--HHHHhCCEEEEEcCCcccCCCEEEEeechhh
Confidence 99999996 4567799999992 3799999998753
No 86
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.71 E-value=3.2e-17 Score=202.84 Aligned_cols=134 Identities=22% Similarity=0.353 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHhhhcCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 043954 562 PQITVEESVKFSAWLRLPPE---IDS---ETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSNP 634 (1045)
Q Consensus 562 ~~lTv~e~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p 634 (1045)
..+||.|++.|...+..+.. +.. ++..+++ +.++.+||... .|+.++ +|||||||||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCC
Confidence 35799999999766643320 000 2334445 45788999864 677774 79999999999999999985
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCCc
Q 043954 635 --SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLGR 703 (1045)
Q Consensus 635 --~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 703 (1045)
++|+|||||+|||+...+.+++.|+++++.|.|||+++|++. ..+.||+|++|. +||++++.|++++
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 899999999999999999999999999888999999999964 567899999993 4799999999875
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.70 E-value=3.4e-18 Score=217.16 Aligned_cols=158 Identities=21% Similarity=0.191 Sum_probs=114.1
Q ss_pred cccccccccceecC-------ceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCcc
Q 043954 488 KLQLLHDITGAFRP-------GILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIH 560 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~-------Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~ 560 (1045)
++.+++|+++.+++ |++++|+||||||||||||++ |+.. + .++..+||||+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE-
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC-
Confidence 35699999999987 999999999999999999999 8754 1 1223349999753
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 043954 561 SPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMD 640 (1045)
Q Consensus 561 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLD 640 (1045)
.+||.|++.. + +|+.+..+. +.+.+|+|+++ +++|++++++|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 4566555421 1 111111111 11346776664 99999999999999999
Q ss_pred CCCCCCCHHHH-HHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEE--EecC
Q 043954 641 EPTSGLDARAA-AIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRII--YSGM 700 (1045)
Q Consensus 641 EPtsgLD~~~~-~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~--~~G~ 700 (1045)
|||+|+|+... ..+++.|++++++ |.++|++||+.. .+...+|++.++. |++. +.|+
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~ 936 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENE 936 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC----
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecC
Confidence 99999999984 5578999999876 999999999975 3556689988874 7777 4454
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=1.2e-19 Score=217.99 Aligned_cols=168 Identities=20% Similarity=0.175 Sum_probs=115.6
Q ss_pred cccccccccc-eecCceEEEEecCCCCCHHHHHHH--HhCCCCCCeEEEEEEECCeeCCc--ccccccceEeecCCccCC
Q 043954 488 KLQLLHDITG-AFRPGILTALMGVSGAGKTTLMDV--LSGRKTGGIIQGEIRVGGYPKVQ--KTFARISGYCEQTDIHSP 562 (1045)
Q Consensus 488 ~~~iL~~vs~-~i~~Ge~~~i~G~sGaGKSTLl~~--l~G~~~~~~~~G~I~~~g~~~~~--~~~~~~~~~v~q~~~~~~ 562 (1045)
..++|+|||+ .+++||+++|+||||||||||+++ ++|..+ +.+|+|.++|.+... ...++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 3579999999 999999999999999999999999 789876 357999999987422 123356799998643211
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP 642 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP 642 (1045)
|+.+ ..... .+ ...++++.+++.+..+..+ +.||| .+|++++||||
T Consensus 102 ------~l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~-------------g~~~~lilDe~ 147 (525)
T 1tf7_A 102 ------KLFI---LDASP--DP-----EGQEVVGGFDLSALIERIN-----YAIQK-------------YRARRVSIDSV 147 (525)
T ss_dssp ------SEEE---EECCC--CS-----SCCSCCSSHHHHHHHHHHH-----HHHHH-------------HTCSEEEEECS
T ss_pred ------cEEE---EecCc--cc-----chhhhhcccCHHHHHHHHH-----HHHHH-------------cCCCEEEECCH
Confidence 1110 00000 00 0001111112222222222 12444 46889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHH--------HHHhcceEEEEec
Q 043954 643 TS-----GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSID--------VFEAFDELLLMKA 691 (1045)
Q Consensus 643 ts-----gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~--------~~~~~d~v~~l~~ 691 (1045)
|+ +||+..++.+.+++++++++|.|+|+++|+++.. ....||++++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999988899999999998731 2345999999985
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=2.5e-17 Score=197.71 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=115.8
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhh
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAW 575 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 575 (1045)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.+++|++. .++.++.. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---S 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH---T
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH---H
Confidence 569999999999999999999999999996542 122 12344555431 12233221 1
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH-----H
Q 043954 576 LRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDAR-----A 650 (1045)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~-----~ 650 (1045)
+ ..+. ++ +...|+.+..+... ..|||||+||+++|+++..+|++|++| ||+|||.. .
T Consensus 331 ~----g~~~-------~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 331 W----GMDF-------EE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp T----SCCH-------HH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred c----CCCH-------HH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 1 1121 12 22345555555544 369999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCc---------HHHHHhcceEEEEecCcE
Q 043954 651 AAIVMRAVKNVVRTGRTTVCTIHQPS---------IDVFEAFDELLLMKAGGR 694 (1045)
Q Consensus 651 ~~~i~~~l~~l~~~g~tvi~~~H~~~---------~~~~~~~d~v~~l~~gG~ 694 (1045)
+..+.++++.+++.|.|+|+++|+.. ..+...+|++++|.+ |+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 99999999999888999999999971 245678999999975 54
No 90
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.69 E-value=1e-18 Score=188.95 Aligned_cols=155 Identities=12% Similarity=0.033 Sum_probs=99.1
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCH
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
+++++|+|+||++++|+++||+||||||||||+|+|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999854 222222 2345689999975 6778999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGL 646 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgL 646 (1045)
.|++.+......... ..+...+.+.+.++.+ .+..+..+ ..+|+||+||+++ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999877543211000 0111112234444433 34445554 3699999999988 6888999999999998888
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 043954 647 DARAAAIVMRAVKNVVRTGRTTVCTIHQ 674 (1045)
Q Consensus 647 D~~~~~~i~~~l~~l~~~g~tvi~~~H~ 674 (1045)
|.. +.++ .+.++++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2222 37899999996
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.68 E-value=5.7e-17 Score=203.38 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=109.7
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHH--------hCCCCCCeEEEEEEECCeeCCcccccccceEeecCCc
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVL--------SGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDI 559 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l--------~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~ 559 (1045)
++.+++|+++.+++|++++|+||||||||||||++ .|..- |.++.. ++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~~---------------~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESAE---------------VSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEEE---------------EECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--cccccc---------------chHH---HH
Confidence 45799999999999999999999999999999999 44322 111110 0000 00
Q ss_pred cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCeE
Q 043954 560 HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVEL--VSNPSII 637 (1045)
Q Consensus 560 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL--~~~p~il 637 (1045)
++..+|+. |... +++|+|++++..+|++| +.+|+++
T Consensus 708 ----------------------------------i~~~ig~~---d~l~-----~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAG---DSQL-----KGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCch---hhHH-----HhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 01111211 1111 35899999999899888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 638 FMDEPTSGLDARAAAIV-MRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 638 lLDEPtsgLD~~~~~~i-~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
||||||+|||+.....+ ...++.++++ |.++|++||+. ++.+.+|++..+. +|++...++.+
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~-ng~v~~~~~~~ 809 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVN-NLHVTALTTEE 809 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEE-EEEEEEEEETT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeE-eeEEEEEecCC
Confidence 99999999999998888 6777888764 99999999995 4678999999997 58998887654
No 92
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.68 E-value=6.6e-17 Score=159.87 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEE
Q 043954 614 SGLSTEQRKRLTIA------VELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia------~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
..||||||||++|| |+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|++||++ ++.+.||+++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ii 133 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 133 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEEE
Confidence 47999999999876 899999999999999999999999999999999877799999999996 4678899999
Q ss_pred EEe
Q 043954 688 LMK 690 (1045)
Q Consensus 688 ~l~ 690 (1045)
+|+
T Consensus 134 ~l~ 136 (148)
T 1f2t_B 134 RIS 136 (148)
T ss_dssp EEE
T ss_pred EEE
Confidence 994
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.68 E-value=1.2e-17 Score=181.70 Aligned_cols=131 Identities=17% Similarity=0.236 Sum_probs=98.2
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeE-EEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII-QGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~-~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
++|+|+| +++|++++|+||||||||||+++|+|..+ +. +|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 89999999999999999999999999876 45 79999988664210 11111222210
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
.+++.. ..+ |++||++|..+|+++++|||| |+
T Consensus 79 ----------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 79 ----------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp ----------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred ----------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 122211 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 649 RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.+...+ ++. ++.|.+|++++|+.+ ..+.+|+++.|.
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 886554 333 356999999999976 568899998885
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.68 E-value=5e-18 Score=183.63 Aligned_cols=169 Identities=18% Similarity=0.171 Sum_probs=107.9
Q ss_pred cccccc-ceecCceEEEEecCCCCCHHHHHHHHh--CCCCCCeEEEEEEECCeeCCcc--cccccceEeecCCccCCCCC
Q 043954 491 LLHDIT-GAFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGIIQGEIRVGGYPKVQK--TFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 491 iL~~vs-~~i~~Ge~~~i~G~sGaGKSTLl~~l~--G~~~~~~~~G~I~~~g~~~~~~--~~~~~~~~v~q~~~~~~~lT 565 (1045)
.|+++- +.+++||+++|+||||||||||+++|+ |... +..|.+.+++...... ...+.+++++|+....+.++
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 455543 489999999999999999999999999 6522 2356677776543211 12244677776544444444
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.++...... .. ..+ ..... ...+.++.++...+..-..+|+++++||||++
T Consensus 96 ~~~~~~~~~~---------~~----~~~----------~~~~~-----~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVG---------LP----SEE----------KFVLE-----DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEccccccc---------cc----ccc----------ceecc-----CcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 4443221100 00 000 00000 12344555555555555689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHHcCCEEEEEecCCcHHH---------HHhc-ceEEEEe
Q 043954 646 LD-----ARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDV---------FEAF-DELLLMK 690 (1045)
Q Consensus 646 LD-----~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~---------~~~~-d~v~~l~ 690 (1045)
|| +..++.+.++++.++++|+|+|+++|+.. +. ...| |++++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 98 67777799999999888999999999986 34 4678 9999996
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.67 E-value=9.6e-17 Score=199.34 Aligned_cols=135 Identities=20% Similarity=0.318 Sum_probs=107.9
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 043954 561 SPQITVEESVKFSAWLRLPPEID------SETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKRLTIAVELVSN 633 (1045)
Q Consensus 561 ~~~lTv~e~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~ 633 (1045)
+..+||.|++.|...+..+.... .++..+++ +.++.+||... .++.++ +|||||||||+||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhhC
Confidence 45679999999855443221000 02233444 34788899765 677764 7999999999999999999
Q ss_pred --CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe-----cCcEEEEecCCCc
Q 043954 634 --PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK-----AGGRIIYSGMLGR 703 (1045)
Q Consensus 634 --p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 703 (1045)
|++|+|||||+|||+...+.+.+.|+++++.|.|||+++|++. .++.+|+|++|. +||++++.|++++
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 5899999999999999999999999999988999999999964 567899999994 4799999998753
No 96
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.66 E-value=3.4e-18 Score=193.23 Aligned_cols=172 Identities=16% Similarity=0.193 Sum_probs=121.2
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc----------ccccccceEeecCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ----------KTFARISGYCEQTD 558 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~----------~~~~~~~~~v~q~~ 558 (1045)
..+|+++ +.|.+||+++|+||||||||||+++|+|... +..|.|.+.|++... ...++.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 5699999 9999999999999999999999999999877 468999999875211 01223355666532
Q ss_pred ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 043954 559 IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDI---KDSLVGIPGQSGLSTEQRKRLTIAVELVSNPS 635 (1045)
Q Consensus 559 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~ 635 (1045)
. ...+.+.-.. ....+.+.....+ .+. .|. + ..||+|| ||+++| +.+|+
T Consensus 136 ~-----~~~~r~~~~~------------~~~~~ae~~~~~~-~~vl~~ld~-~-----~~lS~g~-r~v~la---l~~p~ 187 (347)
T 2obl_A 136 R-----PALERMKAAF------------TATTIAEYFRDQG-KNVLLMMDS-V-----TRYARAA-RDVGLA---SGEPD 187 (347)
T ss_dssp S-----CHHHHHHHHH------------HHHHHHHHHHTTT-CEEEEEEET-H-----HHHHHHH-HHHHHH---TTCCC
T ss_pred C-----CHHHHHHHHH------------HHHHHHHHHHhcc-ccHHHHHhh-H-----HHHHHHH-HHHHHH---cCCCC
Confidence 1 2222221100 0000111111111 010 121 2 3699999 899999 68888
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEecCCcHHHHHhcceEEEEecCcEEEEecCC
Q 043954 636 IIFMDEPTSGLDARAAAIVMRAVKNVVR--TGR-----TTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 636 illLDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 701 (1045)
+ |+|||+....++.++++++.+ +|. ||++++|+.+ ...||+++++. +|+++.+|++
T Consensus 188 ~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~-dG~Ivl~~~l 250 (347)
T 2obl_A 188 V------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSIL-DGHIVLTREL 250 (347)
T ss_dssp C------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHC-SEEEEBCHHH
T ss_pred c------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEee-CcEEEEeCCH
Confidence 7 999999999999999999864 477 8999999987 46799999998 5999998864
No 97
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.65 E-value=1e-17 Score=209.36 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=98.9
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
++.+++|+|+++++|++++|+||||||||||||++++.... . +...++|++....+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-a------------------q~g~~vpa~~~~i~~---- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-A------------------QIGSYVPAEEATIGI---- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-H------------------HHTCCBSSSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-h------------------hcCccccchhhhhhH----
Confidence 46799999999999999999999999999999999863210 0 000112211100000
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
+++++..+|+.+..+.. .+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 716 -----------------------~d~i~~~ig~~d~l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 716 -----------------------VDGIFTRMGAADNIYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp -----------------------CSEEEEEC---------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred -----------------------HHHHHHhCChHHHHHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 00000011111111111 13689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-cCCEEEEEecCCcHHHHHhcceE
Q 043954 648 ARAAAIVM-RAVKNVVR-TGRTTVCTIHQPSIDVFEAFDEL 686 (1045)
Q Consensus 648 ~~~~~~i~-~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~v 686 (1045)
+.....+. ..++.+++ .|.|+|++||+.. +.+.+|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99999987 77888865 5999999999964 55666654
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.64 E-value=2.8e-17 Score=175.31 Aligned_cols=157 Identities=14% Similarity=0.103 Sum_probs=98.1
Q ss_pred cccccc-ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCe-----EEEEEEECCeeCCcccccccceEeecCCccCCCC
Q 043954 491 LLHDIT-GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-----IQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQI 564 (1045)
Q Consensus 491 iL~~vs-~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~-----~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 564 (1045)
.|+.+- +-+++||+++|+||||||||||+++|+|.....+ ..|.+.+++.+.. ..+.+++++|...+.+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~- 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-
Confidence 344433 6899999999999999999999999999432211 2357777764321 11223444443322222
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCCe
Q 043954 565 TVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE-QRKRLTIAVELVS-------NPSI 636 (1045)
Q Consensus 565 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG-qrqRv~ia~aL~~-------~p~i 636 (1045)
|+.||+.+. ...+++ +++++..+++++. +|++
T Consensus 89 ~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 128 (231)
T 4a74_A 89 EVLKHIYVA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKL 128 (231)
T ss_dssp HHHHTEEEE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred HHhhcEEEE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeE
Confidence 333332211 012333 3333555555555 9999
Q ss_pred EEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHc-CCEEEEEecCCcH---HHHHhcceEEEEec
Q 043954 637 IFMDEPTSGLDAR-------A-----AAIVMRAVKNVVRT-GRTTVCTIHQPSI---DVFEAFDELLLMKA 691 (1045)
Q Consensus 637 llLDEPtsgLD~~-------~-----~~~i~~~l~~l~~~-g~tvi~~~H~~~~---~~~~~~d~v~~l~~ 691 (1045)
+++||||+++|+. . ..++++.|++++++ |.|||+++|.... .+...+|+++.|++
T Consensus 129 lilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 129 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp EEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred EEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 9999999999984 2 23778888887654 9999999995431 25677899999985
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.61 E-value=1.3e-18 Score=183.56 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=111.6
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccC--CCCCHHHHHHHHhhh
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHS--PQITVEESVKFSAWL 576 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~ 576 (1045)
.++|++++|+||||||||||+|+|+|... + .++|++|++.+. ..+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E-------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C-------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 47899999999999999999999999754 1 367899987765 5679998875432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCCeEEEeCCCCC-------
Q 043954 577 RLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQ----RKRLTIAVELVSNPSIIFMDEPTSG------- 645 (1045)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq----rqRv~ia~aL~~~p~illLDEPtsg------- 645 (1045)
..+.... .+.+.+.++.+++.+..+... ..+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAFD----LALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGBC----HHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhhh----HHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111112 234666777777766555543 3588886 4789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HHcCCEEEEEecCC
Q 043954 646 LDARAAAIVMRAVKNV-VRTGRTTVCTIHQP 675 (1045)
Q Consensus 646 LD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~ 675 (1045)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999875 45689999999974
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.61 E-value=1.9e-15 Score=177.11 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEec
Q 043954 616 LSTEQRKRLTIAVELV----SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKA 691 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 691 (1045)
||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+++.++|++||++ +..+.||+++.+..
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVYR 411 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEEE
Confidence 9999999999999999 58999999999999999999999999999865578999999984 56788999999964
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.61 E-value=3.8e-17 Score=181.44 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=105.1
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cc--cccceEeecCCccCCCCCHHHHHH
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-------TF--ARISGYCEQTDIHSPQITVEESVK 571 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-------~~--~~~~~~v~q~~~~~~~lTv~e~l~ 571 (1045)
+|++++|+||||||||||+++|+|..+ +.+|+|.++|.+.... .+ ++.+++++|+....|..|++||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 799999999999999999999999876 3579999999885321 11 245799999988888889999987
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 043954 572 FSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAA 651 (1045)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~ 651 (1045)
++.... .+ ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 642110 00 001222333222222 2456669999999999999994443 4555555
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCC
Q 043954 652 AIVMRAVKNVVRT-GRTTVCTIHQP 675 (1045)
Q Consensus 652 ~~i~~~l~~l~~~-g~tvi~~~H~~ 675 (1045)
..+++.++++.++ |.|+|++||..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 5666777777654 89999999974
No 102
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=8.3e-18 Score=187.17 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=85.1
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCC-CCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCC
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR-KTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~-~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 565 (1045)
+++.+++|++++| +|+||||||||||++.|.|. .. +.+| |.++|.+.......+.+++++|++.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 4567999999988 99999999999999999996 44 4678 8888876533222345789999887778889
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 043954 566 VEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsg 645 (1045)
+.|+..++..... .+..+..++.+. +..+..+ +++|||||||+.+||+++ ++++||||++
T Consensus 80 v~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAINC-----RDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 9998876532210 000011112111 2233444 369999999999998875 9999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCc
Q 043954 646 -LDARAAAIVMRAVKNVVRT-GRTTVCTIHQPS 676 (1045)
Q Consensus 646 -LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 676 (1045)
||+... +.++++.++ +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 556666543 678888899853
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.60 E-value=1.4e-16 Score=196.53 Aligned_cols=134 Identities=21% Similarity=0.161 Sum_probs=98.5
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
++.+++|+|++ |++++|+||||||||||||+|+|.... +..|.+. + ..+..+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p----a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P----AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S----SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e----hhccceeeHHH---hhccCCHH
Confidence 35799999999 999999999999999999999996420 1223321 1 11234677765 34444554
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCeEEEeCC---
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVEL--VSNPSIIFMDEP--- 642 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL--~~~p~illLDEP--- 642 (1045)
||+. .++|+|+++++.+++++ +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 4431 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHcCCEEEEEecCCcHHHHHhc
Q 043954 643 TSGLDARAA-AIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAF 683 (1045)
Q Consensus 643 tsgLD~~~~-~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 683 (1045)
|++||..+. ..+++.|++ .|.|+|++||+. +..+.+
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 999999875 578877765 589999999985 344544
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.59 E-value=9.5e-17 Score=182.21 Aligned_cols=166 Identities=16% Similarity=0.121 Sum_probs=103.6
Q ss_pred cccccc-cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEE----EE-EEECCeeCCcccccccceEeecCCccCCC
Q 043954 490 QLLHDI-TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQ----GE-IRVGGYPKVQKTFARISGYCEQTDIHSPQ 563 (1045)
Q Consensus 490 ~iL~~v-s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~----G~-I~~~g~~~~~~~~~~~~~~v~q~~~~~~~ 563 (1045)
..|+++ ++.+++|++++|+||||||||||++.+++.....+.+ |+ |++++.+.. .++.+++++|...+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 346665 6899999999999999999999999999965211233 67 888876531 12345666665433322
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCe
Q 043954 564 ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELV-------SNPSI 636 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~-------~~p~i 636 (1045)
++.||+.+.. . .-|++|+|++.++++++ .+|++
T Consensus 195 -~v~~ni~~~~------------------------------------~---~~~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 195 -EVLKHIYVAR------------------------------------A---FNSNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp -HHGGGEEEEE------------------------------------C---CSHHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred -HHhhCEEEEe------------------------------------c---CChHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 3333322110 0 01456777777777777 68999
Q ss_pred EEEeCCCCCCCHHH------------HHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 637 IFMDEPTSGLDARA------------AAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 637 llLDEPtsgLD~~~------------~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
+++||||++||+.. ..++++.|++++++ |.|+|+++|... +.-..+++..... +|+++.++.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 99999999999852 35666777777654 899999999864 3333344445554 566655544
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.56 E-value=1.8e-16 Score=166.61 Aligned_cols=178 Identities=14% Similarity=0.142 Sum_probs=96.3
Q ss_pred EEEeceEEEEecCccccccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC---CCeEEEEEEECCe
Q 043954 464 MAFKDVRYFVDTPPAMRKQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIQGEIRVGGY 540 (1045)
Q Consensus 464 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~---~~~~~G~I~~~g~ 540 (1045)
++++|+++.+. ..++++ +.+++|+.++|+|+||||||||+|.|+|... ..+..|++...+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 56778877652 247787 8899999999999999999999999999761 0145566543221
Q ss_pred eC-C-cccccccceEeecCCccCCCCC---HHHHHHHHhhh-c----------CCCCCCHHHHHHHHHHHHHHcCCCcc-
Q 043954 541 PK-V-QKTFARISGYCEQTDIHSPQIT---VEESVKFSAWL-R----------LPPEIDSETKARFVEEVIETIELDDI- 603 (1045)
Q Consensus 541 ~~-~-~~~~~~~~~~v~q~~~~~~~lT---v~e~l~~~~~~-~----------~~~~~~~~~~~~~v~~~l~~l~L~~~- 603 (1045)
-. . ........|+..++ .+... .+..+...... + .....+. .++.+.+.++..+++..
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~ 142 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV 142 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE
Confidence 00 0 00000111111100 00000 11111111100 0 0011122 12234455666666543
Q ss_pred ccccccCCCCCCCCHHHHHH-HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 043954 604 KDSLVGIPGQSGLSTEQRKR-LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRT 667 (1045)
Q Consensus 604 ~~~~vg~~~~~~LSgGqrqR-v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 667 (1045)
..+++. .+|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.++|.|
T Consensus 143 v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 233332 589999999 89999999999999999999999999999999999998766544
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.56 E-value=5.6e-16 Score=165.35 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=109.8
Q ss_pred ccccccccc-eecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccccc---ccceEeecCCccCCCC
Q 043954 489 LQLLHDITG-AFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFA---RISGYCEQTDIHSPQI 564 (1045)
Q Consensus 489 ~~iL~~vs~-~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~---~~~~~v~q~~~~~~~l 564 (1045)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+....... +..++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 457899986 899999999999999999999999998643 2345666544332211111 1122222211000 00
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--eEEEeCC
Q 043954 565 TVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPS--IIFMDEP 642 (1045)
Q Consensus 565 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~--illLDEP 642 (1045)
++ . . ... +.++ ...+ ....|.+|.++...+.+...+|+ ++++|||
T Consensus 86 ~~---------~--~-~~~------------~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II---------I--D-ALM------------KEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE---------E--E-CCC---------------------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE---------E--e-ccc------------cccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 0 0 000 0000 0001 02359999999888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHHc-CCEEEEEecCCc-------HHHHHhcceEEEEec
Q 043954 643 TSGL--DARAAAIVMRAVKNVVRT-GRTTVCTIHQPS-------IDVFEAFDELLLMKA 691 (1045)
Q Consensus 643 tsgL--D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~-------~~~~~~~d~v~~l~~ 691 (1045)
|+++ |+....++++.|++++++ |.|+|+++|+.. ..+.+.||++++|.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 9888 999999999999998754 899999999972 236778999999974
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.56 E-value=1.5e-16 Score=193.32 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=107.2
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC------cccccccceEeecCCccCCCCCHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV------QKTFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~------~~~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
+++++. ++|+|||||||||||++|+|+..+ ..+|+|+++|.++. ...+++.++|++|+..+++.+||+||
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHH
Confidence 355554 999999999999999999998752 26899999998742 12456778999999999999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC------C
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP------T 643 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP------t 643 (1045)
+.++.... . +.. .++| ++++.++.+...+|+++++||| |
T Consensus 118 i~~~~~~~------------------~--~~~------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 118 INKAQNAI------------------A--GEG------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp HHHHHHHH------------------H--CSS------------SCCC---SCCEEEEEEESSSCCEEEEECCC------
T ss_pred HHHHHHHh------------------c--CCc------------cccc---hHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 97653211 0 000 0011 1112222233458999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCc------HHHHHhc-----ceEEEEecCcEEEEecCC
Q 043954 644 SGLDARAAAIVMRAVKNVVRT--GRTTVCTIHQPS------IDVFEAF-----DELLLMKAGGRIIYSGML 701 (1045)
Q Consensus 644 sgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~------~~~~~~~-----d~v~~l~~gG~~~~~G~~ 701 (1045)
+|||+..+.++.++++++.++ +.++++++|+.+ ..+.+.. ..++++.+ +..+..|+.
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK-~Dlv~~g~~ 232 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK-PDLVDKGTE 232 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC-GGGSSSSST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc-hhhcCcccH
Confidence 999999999999999997543 667888899865 2223332 34666664 555555543
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.56 E-value=9e-16 Score=190.50 Aligned_cols=156 Identities=11% Similarity=0.030 Sum_probs=105.3
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
++.+++|+|++ ++|++++|+||||||||||||+|+|....+ . .|...... +..++++.| ++..+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q------~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y------IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T------TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h------cCcccchh--cccceeHHH---HHhhCCHH
Confidence 35699999999 999999999999999999999999953200 0 11111111 123455544 34444554
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
|++.. ++ +.+|+|++ +++.+..++.+|+++|||||++|+|
T Consensus 661 d~l~~--------------------------~~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLAS--------------------------GR-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHh--------------------------hh-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence 44321 00 23666665 4555556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEecCcEEEEec
Q 043954 648 ARAAAIV-MRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMKAGGRIIYSG 699 (1045)
Q Consensus 648 ~~~~~~i-~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 699 (1045)
+.....+ .+.++.+.++ |.++|++||+.. +.+.+|++..+. +|++.+..
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~-n~~~~~~~ 751 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVA-NVHLDALE 751 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEE-EEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceE-EEEEEEEE
Confidence 9887776 7888888874 999999999974 567888876665 36666544
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.56 E-value=1.5e-15 Score=172.07 Aligned_cols=125 Identities=19% Similarity=0.218 Sum_probs=87.2
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCCCCCeE-EEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhh
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII-QGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWL 576 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~-~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~ 576 (1045)
...+|++++|+|||||||||||++|+|..+ +. .|.|...+.+.. ...+...++++|.......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIE-FVHESKKCLVNQREVHRDT------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTB-------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHH-hhhhccccceeeeeecccc-------------
Confidence 678999999999999999999999999765 33 455544333321 1122223445443221111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 043954 577 RLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMR 656 (1045)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~ 656 (1045)
++-.+ +||++|..+|++|++|||| |.++..
T Consensus 183 ---------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~---- 212 (356)
T 3jvv_A 183 ---------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIR---- 212 (356)
T ss_dssp ---------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----
T ss_pred ---------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----
Confidence 12111 8999999999999999999 666544
Q ss_pred HHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 657 AVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 657 ~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.+.+++++|+++++++|+.+ ..+.+||++.|.
T Consensus 213 ~~~~~~~~G~~vl~t~H~~~--~~~~~dRli~l~ 244 (356)
T 3jvv_A 213 LALTAAETGHLVFGTLHTTS--AAKTIDRVVDVF 244 (356)
T ss_dssp HHHHHHHTTCEEEEEESCSS--HHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEEEEccCh--HHHHHHHHhhhc
Confidence 44445677999999999987 348899999885
No 110
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.54 E-value=1e-14 Score=160.71 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=102.9
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhc
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLR 577 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 577 (1045)
.+++|++++|+||||||||||++.+++... .|++ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 589999999999999999999999998543 3444 23433211 2345677655432 01112211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHHHH---H
Q 043954 578 LPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTS--GLDARAA---A 652 (1045)
Q Consensus 578 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPts--gLD~~~~---~ 652 (1045)
. .... ...+++++.+++.+..+..+ ..||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1122 22456778888776665544 46999998875 68899999999999999 9997544 8
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCc
Q 043954 653 IVMRAVKNVVR-TGRTTVCTIHQPS 676 (1045)
Q Consensus 653 ~i~~~l~~l~~-~g~tvi~~~H~~~ 676 (1045)
++++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88899999864 5999999999864
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.54 E-value=2.1e-17 Score=170.71 Aligned_cols=158 Identities=19% Similarity=0.160 Sum_probs=103.2
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-ccccccceEeecCCccCCCCCHHHHHHHHhhhcCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-KTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPP 580 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~ 580 (1045)
|++++|+||||||||||+++|+|..+ .+| |.++|.+... ...++.+||++|+. .. + ++++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g--~-~~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SG--T-RGPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TS--C-EEEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--cc--c-eehh---hcccc--
Confidence 78999999999999999999999764 357 8888876533 23456789999864 11 1 1111 11110
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCCeEEEeC--CCCCCCHHHHHH
Q 043954 581 EIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQRKRL-TIAV---ELVSNPSIIFMDE--PTSGLDARAAAI 653 (1045)
Q Consensus 581 ~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv-~ia~---aL~~~p~illLDE--PtsgLD~~~~~~ 653 (1045)
+.++ ..+..+|..+ ..+|+|||+++ ++++ |+..+|+++++|| |+..+|....+.
T Consensus 67 ------------------~~~~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0110 1122444433 36999999998 4454 6899999999999 899999876555
Q ss_pred HHHHHHHHHHcCCEEEE----EecCCcHHHHHhcceEEEEecCcEEEEecC
Q 043954 654 VMRAVKNVVRTGRTTVC----TIHQPSIDVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 654 i~~~l~~l~~~g~tvi~----~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
+.+.+ ++.+++|+ ++|+.+ ....|++..+. +|+++.-..
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCS
T ss_pred HHHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeCh
Confidence 54444 44555553 238753 24567777665 578876543
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.7e-15 Score=174.84 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=90.8
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCH
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
+++.+++|+||+| +|+|+||||||||+|+|+|...+.+..|.+.+++.+ ....+.+++++|++...+.+||
T Consensus 22 ~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 22 YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 3467999999998 999999999999999999976521112222222211 1123457899998888888999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC---eEEEeCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPS---IIFMDEPT 643 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~---illLDEPt 643 (1045)
.||+.+..... .....+.+.+.++ ..++.+++||++|||+++.+|+ +|++||||
T Consensus 93 ~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt 149 (418)
T 2qag_C 93 VDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS 149 (418)
T ss_dssp EECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-
T ss_pred eechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc
Confidence 99987754221 1111111212221 1256677889999999999999 99999999
Q ss_pred -CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 644 -SGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 644 -sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
+|||+... +.++++.+ +.++|+++|..+
T Consensus 150 ~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 150 GHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred ccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 69999873 44455543 788888888654
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.46 E-value=1.3e-13 Score=139.92 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEE
Q 043954 614 SGLSTEQRKRLTIAVELVS----NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l 689 (1045)
..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|+++|+. .+.+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEE
Confidence 3699999999999999974 4699999999999999999999999999865 57899999985 467899999866
Q ss_pred e
Q 043954 690 K 690 (1045)
Q Consensus 690 ~ 690 (1045)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 4
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.43 E-value=9.9e-14 Score=146.63 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=100.5
Q ss_pred cccccccc-ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHH
Q 043954 489 LQLLHDIT-GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 489 ~~iL~~vs-~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
.+.|+++. +-+++|++++|+||||||||||++.|++ .. ..+.+.++..+ . .+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~---~~~v~~i~~~~-----------------~----~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS---GKKVAYVDTEG-----------------G----FSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH---CSEEEEEESSC-----------------C----CCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc---CCcEEEEECCC-----------------C----CCHH
Confidence 34677777 4899999999999999999999999998 21 12333433221 0 0111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CCeEEEeCCCC
Q 043954 568 ESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTE--QRKRLTIAVELVSN-PSIIFMDEPTS 644 (1045)
Q Consensus 568 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG--qrqRv~ia~aL~~~-p~illLDEPts 644 (1045)
+-....... .... +++++.+. +. ..|++ ++|+++.+++++.+ |+++++||||+
T Consensus 61 ~~~~~~~~~----~~~~-------~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 61 RLVQMAETR----GLNP-------EEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHTT----TCCH-------HHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhc----CCCh-------HHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 100000000 1111 11222221 11 24444 36788999999986 99999999999
Q ss_pred CCCHHH--------HHHHHHHHHHHHHc-CCEEEEEecCCcH------------HHHHhcceEEEEecC
Q 043954 645 GLDARA--------AAIVMRAVKNVVRT-GRTTVCTIHQPSI------------DVFEAFDELLLMKAG 692 (1045)
Q Consensus 645 gLD~~~--------~~~i~~~l~~l~~~-g~tvi~~~H~~~~------------~~~~~~d~v~~l~~g 692 (1045)
++|+.. ..++++.|++++++ |.|+|+++|.... .+...+|.+++|.+.
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 117 HYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 999743 35566678887765 8999999997541 356789999999753
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=2.8e-14 Score=163.79 Aligned_cols=170 Identities=19% Similarity=0.180 Sum_probs=111.0
Q ss_pred cccccccccceecCceE--EEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCC
Q 043954 488 KLQLLHDITGAFRPGIL--TALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQIT 565 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~--~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 565 (1045)
+.+ |+|+|+++++|++ ++|+||||||||||+|+|+|..- .|.-. .. ......++.++|++|++.+++.+|
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~--~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-TH--TQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CC--CCccceEeeEEEEeecCccccccc
Confidence 345 9999999999999 99999999999999999999742 12111 00 011122356899999988888899
Q ss_pred HHHHHHHHhhhcCCCCCCHH--------HHHHHHHHHHHHc-CCC----cccccc----cc--CCCCCCCCHHHHHHHHH
Q 043954 566 VEESVKFSAWLRLPPEIDSE--------TKARFVEEVIETI-ELD----DIKDSL----VG--IPGQSGLSTEQRKRLTI 626 (1045)
Q Consensus 566 v~e~l~~~~~~~~~~~~~~~--------~~~~~v~~~l~~l-~L~----~~~~~~----vg--~~~~~~LSgGqrqRv~i 626 (1045)
|.||+.++.. .+.. ..++..++.++.. ++. ...|+. +. .+..++|+-.+ +.|
T Consensus 99 v~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 99 IVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp EEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred hhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 9999866431 1111 1123344555544 432 122332 11 11124677776 789
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEecC
Q 043954 627 AVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKN-VVRTGRTTVCTIHQ 674 (1045)
Q Consensus 627 a~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tvi~~~H~ 674 (1045)
+++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999999986 77778888888764
No 116
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.40 E-value=2e-13 Score=163.43 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=69.6
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 614 SGL-STEQRKRLTIAVELVSNP--SIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 614 ~~L-SgGqrqRv~ia~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||++. +...||++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 357 999999999999999999 99999999999999999999999999987 899999999964 567899999996
Q ss_pred c
Q 043954 691 A 691 (1045)
Q Consensus 691 ~ 691 (1045)
+
T Consensus 472 ~ 472 (517)
T 4ad8_A 472 K 472 (517)
T ss_dssp C
T ss_pred c
Confidence 4
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.40 E-value=1e-15 Score=158.45 Aligned_cols=140 Identities=13% Similarity=0.027 Sum_probs=89.0
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccccceEeecCCccCCCCCHHHHHHHHhhh
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-TFARISGYCEQTDIHSPQITVEESVKFSAWL 576 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~ 576 (1045)
.+++|++++|+||||||||||+|+|+|.. ..|.|.++|.+.... ..++.++|++|+.. +..|+.||+.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 37899999999999999999999999973 268999998764221 12234678877543 456889998764321
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccc--cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 043954 577 RLPPEIDSETKARFVEEVIETIELDDIK--DSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIV 654 (1045)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~--~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i 654 (1045)
....... ..++.+++..++.... +..+ ..+|+|++||+.++|++.++|+++ +|+...+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~-----~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTALARPL-----HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTTCSCE-----EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhcCCCe-----EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 1000000 0000000001111111 1111 259999999999999999999976 688777777
Q ss_pred HHHHHHH
Q 043954 655 MRAVKNV 661 (1045)
Q Consensus 655 ~~~l~~l 661 (1045)
.+.++.+
T Consensus 141 ~~~~~~l 147 (191)
T 1zp6_A 141 HSQFADL 147 (191)
T ss_dssp HHHTTCC
T ss_pred HHHHhcc
Confidence 7666554
No 118
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.39 E-value=2.5e-15 Score=152.46 Aligned_cols=139 Identities=15% Similarity=0.259 Sum_probs=89.2
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeCCc------cccc-ccce----EeecCCccCCCCCHHHHH
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRKTG-GIIQGEIRVGGYPKVQ------KTFA-RISG----YCEQTDIHSPQITVEESV 570 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~~~-~~~~G~I~~~g~~~~~------~~~~-~~~~----~v~q~~~~~~~lTv~e~l 570 (1045)
++++|+|+||||||||+++|+|.+++ +...|+|.++|.++.. ..++ +.++ +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999998652 1227999999987321 2334 3567 788866544 100
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeE-------EEeCC
Q 043954 571 KFSAWLRLPPEIDSETKARFVEEVIET-IELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSII-------FMDEP 642 (1045)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~il-------lLDEP 642 (1045)
.+.+ ..+.++++++. + + ..|+.+++ +||||||||++||||++.+|++. .=|.|
T Consensus 77 -----------~~~~-~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSEE-EGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCHH-HHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CChh-hhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0111 12235666665 4 3 57999985 59999999999999999999873 23554
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHcCC
Q 043954 643 TSG---LDARAAAIVMRAVKNVVRTGR 666 (1045)
Q Consensus 643 tsg---LD~~~~~~i~~~l~~l~~~g~ 666 (1045)
..+ +|......+.+.+.+..++|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 344556777777766666653
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.38 E-value=8.1e-16 Score=159.15 Aligned_cols=167 Identities=14% Similarity=0.130 Sum_probs=109.6
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPE 581 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 581 (1045)
|++++|+||||||||||+++|++. .+|++.++|.+.... ...++++|.....+..|+++++.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNF---- 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHH----
Confidence 789999999999999999999972 357888988653221 23567777554445567888876543211
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCC---CCCCC--CHHHHHHHHHHH------HHhhCCCeEEEeCCCCCCCHHH
Q 043954 582 IDSETKARFVEEVIETIELDDIKDSLVGIP---GQSGL--STEQRKRLTIAV------ELVSNPSIIFMDEPTSGLDARA 650 (1045)
Q Consensus 582 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~---~~~~L--SgGqrqRv~ia~------aL~~~p~illLDEPtsgLD~~~ 650 (1045)
.+ -+.....+...+.. ..+.+ |+|++||+.++. +++.+|+...+|| +||+..
T Consensus 70 -------------~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 70 -------------LL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp -------------HH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred -------------Hh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 00 01000111100000 00124 888888888888 9999999888884 899988
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecC-CcHHHHHhcceEEEEecCcEEEEecCCC
Q 043954 651 AAIVMRAVKNVVRTGRTTVCTIHQ-PSIDVFEAFDELLLMKAGGRIIYSGMLG 702 (1045)
Q Consensus 651 ~~~i~~~l~~l~~~g~tvi~~~H~-~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 702 (1045)
... .+.++.+.+.+.++|.++|. ++ ++.+.||+|+ + +|+++..|+++
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 888 88888876667899999998 65 5788999998 5 69999999874
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.38 E-value=1.2e-13 Score=158.01 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=97.7
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeE-EEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII-QGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~-~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
.+|++++ +++|++++|+||||||||||+++|+|..+ +. +|+|.+.|.+.. ...++.+++++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee----------
Confidence 3677776 89999999999999999999999999876 44 799977765543 22345577888731
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
+|+.. ..+ +.+|+++|..+|+++++|||+ |+
T Consensus 191 -----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~ 221 (372)
T 2ewv_A 191 -----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 221 (372)
T ss_dssp -----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SH
T ss_pred -----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CH
Confidence 12210 135 469999999999999999999 77
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 649 RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
++... .++. +..|.+++.++|..+ ..+.+||++.|.
T Consensus 222 e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 222 ETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 66443 4443 356899999999965 677888887664
No 121
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.37 E-value=2.3e-14 Score=151.67 Aligned_cols=127 Identities=16% Similarity=0.113 Sum_probs=85.8
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCH----HHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV----EESVKF 572 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv----~e~l~~ 572 (1045)
-..++|++++|+||||||||||+|+|+|..++.+..|+|.+++.+... ..++.++|++|++..++.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 357899999999999999999999999987632378999998866432 224567999986543332222 111110
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 652 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~ 652 (1045)
. ...- +.| +++ +++++.+++++||| ||+.++.
T Consensus 90 ~-------------------------------~~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 F-------------------------------GNYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp T-------------------------------TEEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred H-------------------------------hccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 0 0000 112 222 34556678999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCc
Q 043954 653 IVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 653 ~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
++.+.+. ++.||++++|++.
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHcc----CCEEEEEECCCHH
Confidence 9999876 5899999999864
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.37 E-value=2.1e-15 Score=172.81 Aligned_cols=163 Identities=12% Similarity=0.069 Sum_probs=102.0
Q ss_pred ccccccceecC--ceEEEEecCCCCCHHHHHHHHhCCCCCCeEE----EEEEEC----CeeCC--cccccccceEeecCC
Q 043954 491 LLHDITGAFRP--GILTALMGVSGAGKTTLMDVLSGRKTGGIIQ----GEIRVG----GYPKV--QKTFARISGYCEQTD 558 (1045)
Q Consensus 491 iL~~vs~~i~~--Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~----G~I~~~----g~~~~--~~~~~~~~~~v~q~~ 558 (1045)
+.+.|++.+++ |+.++|+||||||||||+|+|+|+++ +.+ |+|.++ |.+.. .... +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 56789999999 99999999999999999999999887 456 665553 22110 0111 1233333321
Q ss_pred ccCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCeE
Q 043954 559 IHSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELV-SNPSII 637 (1045)
Q Consensus 559 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~-~~p~il 637 (1045)
.. ...|++||+.+. + .+..++.+ ..+|+|++||..+++++. .+|+++
T Consensus 234 ~~-~~~t~~~nl~~~-------------------------~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 ID-YAVRHSHKIAFI-------------------------D-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HH-HHHHHCSSEEEE-------------------------S-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HH-HHHhccCCEEEE-------------------------e-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 11 011222221110 0 00111111 135677788888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 638 FMDE---PT------SGLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 638 lLDE---Pt------sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
+||| |+ .++|+..+..+.+.|+++.++ |.++++++|. + +..+.+|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 589999999999999987654 8899999975 3 4556677666654
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.36 E-value=1.1e-13 Score=157.93 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=99.9
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-ccccccceEee-cCCccCCCCCHHH
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-KTFARISGYCE-QTDIHSPQITVEE 568 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-~~~~~~~~~v~-q~~~~~~~lTv~e 568 (1045)
+++++|+.+++|++++|+||||||||||+|+|+|..+ +.+|.|.++|..... ...++.+++++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 3499999999999999999999999999999999987 468999999853211 12345567777 43210
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
+++++..+|-.|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012333467777778888999999999986
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEecC
Q 043954 649 RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMKAG 692 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 692 (1045)
.++.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2456677776544457899999975 57789999988753
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.36 E-value=2.3e-16 Score=177.01 Aligned_cols=157 Identities=14% Similarity=0.087 Sum_probs=101.3
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCCCC------CeEEEEEEECCeeCCcc------------------cccccceEe---
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRKTG------GIIQGEIRVGGYPKVQK------------------TFARISGYC--- 554 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~~~------~~~~G~I~~~g~~~~~~------------------~~~~~~~~v--- 554 (1045)
=++++|+|+||||||||+|.|.|.... .+..|+|.+||.++... .+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 368999999999999999999997521 14679999999875321 223445666
Q ss_pred ecCCccCCCCCHHHHHHHHhhhcCCCCC--CHH-HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 043954 555 EQTDIHSPQITVEESVKFSAWLRLPPEI--DSE-TKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELV 631 (1045)
Q Consensus 555 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~--~~~-~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~ 631 (1045)
+|+..+.+..++.||..++.....-... ..+ ....+++.++..+++.+..+... ++|+|||||+..+++++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEE
Confidence 5666556677777776542100000000 000 00001111222334444444332 48999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 632 SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 632 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.+|+++ ||| .++.+.++++. .+.+|++++|++.
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 999987 998 67888888874 5889999999864
No 125
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.33 E-value=8.6e-15 Score=158.20 Aligned_cols=146 Identities=13% Similarity=0.172 Sum_probs=98.6
Q ss_pred CceEEEEecCCCCCHHHHHHHHh---CCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhh-
Q 043954 501 PGILTALMGVSGAGKTTLMDVLS---GRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWL- 576 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~---G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~- 576 (1045)
++++++|+||||||||||+++|+ |... +..|+|.++|.+.. ....+.+.+++|+..+.+..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9876 67788888765422 11223445567777778888999999764321
Q ss_pred -----cCCCCCCHHHHHHHHHHHHH--HcC------------CCccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCCe
Q 043954 577 -----RLPPEIDSETKARFVEEVIE--TIE------------LDDIKDSLVGIPGQSGLSTEQRKRLTIAVEL-VSNPSI 636 (1045)
Q Consensus 577 -----~~~~~~~~~~~~~~v~~~l~--~l~------------L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL-~~~p~i 636 (1045)
... ...... ..++.+.+ .++ +....++.+ ..||| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCcc
Confidence 000 011111 11222221 111 111223333 35898 66 778 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHHc
Q 043954 637 IFMD----EPTSGLDARAAAIVMRAVKNVVRT 664 (1045)
Q Consensus 637 llLD----EPtsgLD~~~~~~i~~~l~~l~~~ 664 (1045)
++|| |||++||..+...+.+.++++.++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 9999 999999999999999999988765
No 126
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.31 E-value=4.1e-13 Score=151.15 Aligned_cols=123 Identities=18% Similarity=0.118 Sum_probs=88.1
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC-CeeCCcccccccceEeecCCccCCCCCHHHH
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVG-GYPKVQKTFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~-g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
-+++++.. .+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.... ...++.+++++|+..++++.||+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh
Confidence 46777775 47999999999999999999999998751 358999887 65532 2234567999999888888899884
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVEL 630 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL 630 (1045)
. + ...+.++..+.+.++++.+++.+..|.... ++| ||+||++||+++
T Consensus 282 ~-----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 G-----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp C-----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred h-----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 1 1 124555556677888998999887887763 699 999999999874
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.30 E-value=1.2e-13 Score=160.32 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=103.8
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------c--ccccceEeecCCccCC
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-------T--FARISGYCEQTDIHSP 562 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-------~--~~~~~~~v~q~~~~~~ 562 (1045)
-+++|+++++|++++|+|+||||||||+++|+|+.. +..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 478999999999999999999999999999999876 4579999987664321 1 2456899999888888
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCC-eEEEe
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELV-SNPS-IIFMD 640 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~-~~p~-illLD 640 (1045)
.+|+++|+.++..-. .+ . -+++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 889999998764211 00 0 0112222211111 12223457888888764 4564 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 043954 641 EPTSGLDARAAAIVMRAVKNVVR-TGRTTVCTIHQ 674 (1045)
Q Consensus 641 EPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~ 674 (1045)
+||+|.|.. +.++.+.+ -|.|.+++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886544 33444443 38899999993
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.30 E-value=1.6e-14 Score=163.11 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=106.8
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccccceEeecCCcc
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-------TFARISGYCEQTDIH 560 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-------~~~~~~~~v~q~~~~ 560 (1045)
.+.+|+++|+++++|++++|+||||||||||+|+|+|... +.+|+|.+.|.+.... ..++.+++++|++..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3569999999999999999999999999999999999765 4579999999875321 234568999998776
Q ss_pred CCCC------------CHHHHHHHH-----------------------------hhhcCCCCCCHHHHH---HHHHHHHH
Q 043954 561 SPQI------------TVEESVKFS-----------------------------AWLRLPPEIDSETKA---RFVEEVIE 596 (1045)
Q Consensus 561 ~~~l------------Tv~e~l~~~-----------------------------~~~~~~~~~~~~~~~---~~v~~~l~ 596 (1045)
++.. +++|.+... ..+..+ . ..++.+ +.+.+...
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~-~-~~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLP-G-AGDELQGIKKGIFELAD 196 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECS-C-C------CCTTHHHHCS
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcC-C-CcccHHHHHHHHhcccc
Confidence 6532 123332110 000000 0 000000 00111111
Q ss_pred HcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 043954 597 TIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVS------NPSIIFMDEPTSGLDARAAAIVMRAVKNVVR 663 (1045)
Q Consensus 597 ~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~ 663 (1045)
.+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|.....++++.|.++.+
T Consensus 197 ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1111 112211 012479999999999999987 688876 999999999999999988654
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.30 E-value=1.8e-12 Score=139.14 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=87.9
Q ss_pred cccccc-ceecCceEEEEecCCCCCHHHHHHHHhC--CCCC---CeEEEEEEECCeeC-Cccc---ccccceEeecCCcc
Q 043954 491 LLHDIT-GAFRPGILTALMGVSGAGKTTLMDVLSG--RKTG---GIIQGEIRVGGYPK-VQKT---FARISGYCEQTDIH 560 (1045)
Q Consensus 491 iL~~vs-~~i~~Ge~~~i~G~sGaGKSTLl~~l~G--~~~~---~~~~G~I~~~g~~~-~~~~---~~~~~~~v~q~~~~ 560 (1045)
.|+.+- +-+++|++++|+||||||||||++.|++ ..++ +...|.+.+++.+. .... ..+.+++.+|
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~---- 87 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS---- 87 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH----
Confidence 344443 6799999999999999999999999999 3321 01356777766542 1000 0111122111
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH-HHHHHHHh--hCCCeE
Q 043954 561 SPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKR-LTIAVELV--SNPSII 637 (1045)
Q Consensus 561 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR-v~ia~aL~--~~p~il 637 (1045)
++++.+. +. ...++.+..+ +.-+.+++ .+|+++
T Consensus 88 --------------------------------~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll 123 (243)
T 1n0w_A 88 --------------------------------DVLDNVA--------YA----RAFNTDHQTQLLYQASAMMVESRYALL 123 (243)
T ss_dssp --------------------------------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred --------------------------------HHhhCeE--------EE----ecCCHHHHHHHHHHHHHHHhcCCceEE
Confidence 1111110 00 1244444332 23333343 589999
Q ss_pred EEeCCCCCCCHH-------H-----HHHHHHHHHHHHHc-CCEEEEEecCCcHH------------------HHHhcceE
Q 043954 638 FMDEPTSGLDAR-------A-----AAIVMRAVKNVVRT-GRTTVCTIHQPSID------------------VFEAFDEL 686 (1045)
Q Consensus 638 lLDEPtsgLD~~-------~-----~~~i~~~l~~l~~~-g~tvi~~~H~~~~~------------------~~~~~d~v 686 (1045)
++|||++.+|+. . ..++++.|++++++ |.|||+++|..... +...+|.+
T Consensus 124 iiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~v 203 (243)
T 1n0w_A 124 IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR 203 (243)
T ss_dssp EEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEE
T ss_pred EEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEE
Confidence 999999999985 3 34566667776654 99999999965321 11268999
Q ss_pred EEEec
Q 043954 687 LLMKA 691 (1045)
Q Consensus 687 ~~l~~ 691 (1045)
++|.+
T Consensus 204 i~l~~ 208 (243)
T 1n0w_A 204 LYLRK 208 (243)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99975
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.29 E-value=6.2e-12 Score=144.17 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=67.7
Q ss_pred CCCCHHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceE
Q 043954 614 SGLSTEQRKRL------TIAVELVSN-PSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDEL 686 (1045)
Q Consensus 614 ~~LSgGqrqRv------~ia~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v 686 (1045)
..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. ++.+||++||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567899999 99999999999999999999999999874 3579999999974 57889999
Q ss_pred EEEecCc
Q 043954 687 LLMKAGG 693 (1045)
Q Consensus 687 ~~l~~gG 693 (1045)
++++++|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998544
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=1.8e-13 Score=136.91 Aligned_cols=80 Identities=25% Similarity=0.218 Sum_probs=66.3
Q ss_pred ccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCH
Q 043954 487 KKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 566 (1045)
+++.+++++|+++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.++... .. ...+++|+..++ .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~-~~-~~~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEE-YN-IAGKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEE-EE-ETTEEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeee-cc-CCCcceeccccc-cCCc
Confidence 4467999999999999999999999999999999999977 3 579999999876422 11 123789987777 8999
Q ss_pred HHHHHH
Q 043954 567 EESVKF 572 (1045)
Q Consensus 567 ~e~l~~ 572 (1045)
.||+.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.24 E-value=5.9e-13 Score=149.08 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=97.4
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccccc--eEeecCCccCCCCCHHH
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-------TFARIS--GYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-------~~~~~~--~~v~q~~~~~~~lTv~e 568 (1045)
..++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+++.+ .+++|.....|.+||+|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 347899999999999999999999999876 4579999999885321 112333 48999888889999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
|+.++.....+. .+++..|+.+..+.. .++.-.++|++..++++++||.+|.
T Consensus 203 ~l~~~~~~~~d~------------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t~---- 254 (328)
T 3e70_C 203 AIQHAKARGIDV------------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALAG---- 254 (328)
T ss_dssp HHHHHHHHTCSE------------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGGT----
T ss_pred HHHHHHhccchh------------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHHH----
Confidence 998653211000 011112222211111 2222348899998888888885554
Q ss_pred HHHHHHHHHHHHHHH-cCCEEEEEecC
Q 043954 649 RAAAIVMRAVKNVVR-TGRTTVCTIHQ 674 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~-~g~tvi~~~H~ 674 (1045)
.++++.++.+.+ .+.|+|++||.
T Consensus 255 ---~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 ---NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ---THHHHHHHHHHHHSCCCEEEEECG
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 355566666664 48999999995
No 133
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.20 E-value=9e-12 Score=123.54 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=37.6
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEecCCc
Q 043954 631 VSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRT-TVCTIHQPS 676 (1045)
Q Consensus 631 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~t-vi~~~H~~~ 676 (1045)
+.+|++|++|||++ +|...++.+.+.+.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588999999998888888 888888653
No 134
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.19 E-value=8.1e-13 Score=145.69 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=85.8
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhh---
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAW--- 575 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~--- 575 (1045)
-+++.+++|.||||||||||.+.|++.... .| . . ++.+.+|+|++.+++. ++++|+.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccc
Confidence 357899999999999999999999987642 11 0 1 2344566998887754 88999987531
Q ss_pred -hc---CCCCCCHHHHHHHHHHHHHHcCCC--c--cccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCeEEEeCCCCC
Q 043954 576 -LR---LPPEIDSETKARFVEEVIETIELD--D--IKDSLVGIPGQSGLSTEQRKRLTIA--VELVSNPSIIFMDEPTSG 645 (1045)
Q Consensus 576 -~~---~~~~~~~~~~~~~v~~~l~~l~L~--~--~~~~~vg~~~~~~LSgGqrqRv~ia--~aL~~~p~illLDEPtsg 645 (1045)
+. .+...+. +...+.++.+.-. . .....+... ...+||||+||+++| +++ +|+|+|+||||++
T Consensus 92 l~~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p~y-~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ 164 (290)
T 1odf_A 92 LLQGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLPKY-DKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLG 164 (290)
T ss_dssp GGSSSCSTTSBCH----HHHHHHHHHHTC------CCEEEECCE-ETTHHHHTCEECSSCEEEES--SCSEEEEEESSTT
T ss_pred hhhhccCcchhHH----HHHHHHHHHhhccCccccCcceeeccC-ccccCCccccccccccceEc--CCCEEEEeCcccc
Confidence 11 1222222 2345566655322 0 011112211 247999999999997 555 9999999999999
Q ss_pred CCHHH
Q 043954 646 LDARA 650 (1045)
Q Consensus 646 LD~~~ 650 (1045)
+|+..
T Consensus 165 ld~~~ 169 (290)
T 1odf_A 165 FNPIL 169 (290)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 99864
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.18 E-value=1.9e-11 Score=125.07 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=42.4
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 043954 631 VSNPSIIFMDEPTS-GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSI 677 (1045)
Q Consensus 631 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 677 (1045)
+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999988789999999998753
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.17 E-value=6.8e-13 Score=153.00 Aligned_cols=162 Identities=13% Similarity=0.089 Sum_probs=94.9
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCCC---------CCeEEEEEEECCeeCCcccccccceEeecCCccCC
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT---------GGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSP 562 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~---------~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~ 562 (1045)
-++++++++.|+.++|+|+|||||||||++|+|..+ -.+..|.|.+++.. .-.+.+.+.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~---------~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE---------RFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSC---------EEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcc---------eEEEEecccccc
Confidence 379999999999999999999999999999999742 01233444333200 001112121111
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 043954 563 QITVEESVKFSAWLRLPPEIDSETKA--RFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMD 640 (1045)
Q Consensus 563 ~lTv~e~l~~~~~~~~~~~~~~~~~~--~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLD 640 (1045)
. ..+ ...+.....+ ++++.++..+++. +..+ ..||+||+||+++|++|+.+|.++++
T Consensus 218 ~--a~~----------~~~L~~~fl~~~era~~lL~vvDls---~~~~-----~~ls~g~~el~~la~aL~~~P~ILVl- 276 (416)
T 1udx_A 218 G--ASE----------GKGLGLEFLRHIARTRVLLYVLDAA---DEPL-----KTLETLRKEVGAYDPALLRRPSLVAL- 276 (416)
T ss_dssp C--GGG----------SCCSCHHHHHHHTSSSEEEEEEETT---SCHH-----HHHHHHHHHHHHHCHHHHHSCEEEEE-
T ss_pred c--hhh----------hhhhhHHHHHHHHHHHhhhEEeCCc---cCCH-----HHHHHHHHHHHHHhHHhhcCCEEEEE-
Confidence 1 000 0011111000 0112222223332 2233 35999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhcceEE
Q 043954 641 EPTSGLDARAAAIVMRAVKNVV-RTGRTTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 641 EPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
+++|...+ ..++.+++.. +.|.+++.+|......+.++++.+.
T Consensus 277 ---NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 277 ---NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp ---ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred ---ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 99999877 4445454443 4477777666443334555555443
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.15 E-value=1.3e-13 Score=159.37 Aligned_cols=140 Identities=14% Similarity=0.076 Sum_probs=94.9
Q ss_pred ccccccccccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccccceE
Q 043954 481 KQGFNEKKLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ-------KTFARISGY 553 (1045)
Q Consensus 481 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~~~~ 553 (1045)
+.++.++...+|+++ +. ++|++++|+|||||||||||++|+|..+ +.+|+|.+.|.++.. ...++.+++
T Consensus 148 ~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~ 223 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDM 223 (418)
T ss_dssp GSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTB
T ss_pred HcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCc
Confidence 344445556689998 54 8999999999999999999999999776 347999998876531 112334455
Q ss_pred ee---------cCCcc--CCC----CCHHHHHHHHhhhc-----CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 043954 554 CE---------QTDIH--SPQ----ITVEESVKFSAWLR-----LPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQ 613 (1045)
Q Consensus 554 v~---------q~~~~--~~~----lTv~e~l~~~~~~~-----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 613 (1045)
.+ |++.. +.+ .|+.+++.++..-. .... +. .+.+ +.+..+++.+.. ..
T Consensus 224 ~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~-~~---~~~i-~rL~~lgl~~~~--~~----- 291 (418)
T 1p9r_A 224 TFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN-TA---VGAV-TRLRDMGIEPFL--IS----- 291 (418)
T ss_dssp CHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCS-SS---HHHH-HHHHHHTCCHHH--HH-----
T ss_pred CHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchh-hH---HHHH-HHHHHcCCcHHH--HH-----
Confidence 44 76544 233 58999998764211 0111 11 1122 245667886542 22
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEE
Q 043954 614 SGLSTEQRKRLTIAVELVSNPSIIF 638 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~~~p~ill 638 (1045)
..|||||+|| |||+|+.+|++..
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccC
Confidence 3699999999 9999999999865
No 138
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.12 E-value=2.1e-13 Score=143.34 Aligned_cols=120 Identities=15% Similarity=0.206 Sum_probs=71.5
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhc
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLR 577 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~-~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 577 (1045)
.++|++++|+||||||||||+++|+|..++ |+..|.|.++|........ ...+..... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~-~~~~~~~~~-------------------~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLL-EPRGLLPRK-------------------G 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHH-GGGTCGGGT-------------------T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHH-HHhcccccC-------------------C
Confidence 579999999999999999999999997652 2246777766654322111 011110000 0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCCeEEEeCCC
Q 043954 578 LPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIA-VELVSNPSIIFMDEPT 643 (1045)
Q Consensus 578 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia-~aL~~~p~illLDEPt 643 (1045)
.+...+... ..+.+..+...+..+..+.+.+. ++|+||+||+++| ++++.++.++++|||.
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCccc-cCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 000111111 22233332222223334444443 5899999999998 8888899888899984
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.10 E-value=3.5e-14 Score=168.36 Aligned_cols=178 Identities=11% Similarity=0.073 Sum_probs=103.4
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
..+++++++.+++|+.++|+|||||||||||++|+|..+ +.+|.|.++|.+.........++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 458999999999999999999999999999999999887 458999998864211111122334443322112234444
Q ss_pred HHHHHhhhcCC----CCCCHHHHH------------------HHHHHHHHHcCCCc---------cccccccCCCCCCCC
Q 043954 569 SVKFSAWLRLP----PEIDSETKA------------------RFVEEVIETIELDD---------IKDSLVGIPGQSGLS 617 (1045)
Q Consensus 569 ~l~~~~~~~~~----~~~~~~~~~------------------~~v~~~l~~l~L~~---------~~~~~vg~~~~~~LS 617 (1045)
++....+.+.+ .++...+.. ..++++++++.... ..+..+.. ...+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~--~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQ--TMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE--EEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEE--EEEEe
Confidence 44322211100 011111100 01223333332211 11111110 12479
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EecCCcHHHHHhc
Q 043954 618 TEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVC--TIHQPSIDVFEAF 683 (1045)
Q Consensus 618 gGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~--~~H~~~~~~~~~~ 683 (1045)
||||||.+++. + | |+|||+.....+++.+.++.++|+|+++ ++|+.+ ++.+.|
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 99999987652 1 7 9999998877777777766666788875 788764 344444
No 140
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.10 E-value=2.8e-12 Score=142.53 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=82.3
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCcc--ccc-ccceEeecCCccC-----CCCCH
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRV---GGYPKVQK--TFA-RISGYCEQTDIHS-----PQITV 566 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~---~g~~~~~~--~~~-~~~~~v~q~~~~~-----~~lTv 566 (1045)
.+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++.... ..+ +.+||++|.+.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 45579999999999999999999999 776 56899999 88765432 122 3589999987543 67899
Q ss_pred HHHH--HHHh----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 043954 567 EESV--KFSA----WLRLPPEIDSETKARFVEEVIETIELDD-IKDSLVGIPGQSGLSTEQRKRLTIAVE 629 (1045)
Q Consensus 567 ~e~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~ia~a 629 (1045)
||+ .|.. .++........+...+++++++.++|.+ ..+.... .|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 888 4431 0111110111122345889999999986 6677663 699999999999873
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.09 E-value=5.5e-11 Score=136.49 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=89.8
Q ss_pred ccccc-cceecCceEEEEecCCCCCHHHHHHHH--hCCCCC---CeEEEEEEECCeeCCc-cc---ccccceEeecCCcc
Q 043954 491 LLHDI-TGAFRPGILTALMGVSGAGKTTLMDVL--SGRKTG---GIIQGEIRVGGYPKVQ-KT---FARISGYCEQTDIH 560 (1045)
Q Consensus 491 iL~~v-s~~i~~Ge~~~i~G~sGaGKSTLl~~l--~G~~~~---~~~~G~I~~~g~~~~~-~~---~~~~~~~v~q~~~~ 560 (1045)
-|+.+ .+-+++|++++|+||||||||||++.| .+..++ +...+.+++++..... .. ..+.+++.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 35543 378999999999999999999999954 455431 1123567776654210 00 0111122111
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCCeE
Q 043954 561 SPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLST-EQRKRLTIAVELV--SNPSII 637 (1045)
Q Consensus 561 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg-GqrqRv~ia~aL~--~~p~il 637 (1045)
++.||+. +. +..++ .+++.+.-+++++ .+|+++
T Consensus 242 ----~vleni~------------------------------------~~----~~~~~~~~~~~l~~~~~~l~~~~~~ll 277 (400)
T 3lda_A 242 ----DALNNVA------------------------------------YA----RAYNADHQLRLLDAAAQMMSESRFSLI 277 (400)
T ss_dssp ----HHHHTEE------------------------------------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred ----hHhhcEE------------------------------------Ee----ccCChHHHHHHHHHHHHHHHhcCCceE
Confidence 1111111 11 01122 2233333333433 469999
Q ss_pred EEeCCCCCCCHHHH------------HHHHHHHHHHHHc-CCEEEEEecCCc------------------HHHHHhcceE
Q 043954 638 FMDEPTSGLDARAA------------AIVMRAVKNVVRT-GRTTVCTIHQPS------------------IDVFEAFDEL 686 (1045)
Q Consensus 638 lLDEPtsgLD~~~~------------~~i~~~l~~l~~~-g~tvi~~~H~~~------------------~~~~~~~d~v 686 (1045)
++||||+.+|+... .++++.|++++++ |.|||+++|... ..+...+|.+
T Consensus 278 VIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~v 357 (400)
T 3lda_A 278 VVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTR 357 (400)
T ss_dssp EEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEE
T ss_pred EecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceE
Confidence 99999999997543 6788888888765 999999999721 1234567888
Q ss_pred EEEec
Q 043954 687 LLMKA 691 (1045)
Q Consensus 687 ~~l~~ 691 (1045)
+.|.+
T Consensus 358 l~L~~ 362 (400)
T 3lda_A 358 LGFKK 362 (400)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88875
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=7.6e-11 Score=134.06 Aligned_cols=136 Identities=14% Similarity=0.042 Sum_probs=74.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC-CCCCCeEEEEEEECCeeCCcc-cccccceEeecCCccCCCCCHHHHHHHHhhhcCCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG-RKTGGIIQGEIRVGGYPKVQK-TFARISGYCEQTDIHSPQITVEESVKFSAWLRLPPE 581 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G-~~~~~~~~G~I~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 581 (1045)
.+.|.||||+|||||+++|+| ... +..|++.++|.+.... ..+..+++++|.+.+....+ + ...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~ 103 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGN 103 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h----------cCC
Confidence 399999999999999999999 454 3578999998764321 12345678888654321110 0 000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 043954 582 IDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNV 661 (1045)
Q Consensus 582 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l 661 (1045)
.... .+++.++.+......+... .||| +..+|+++++|||++ ||+.++..+.+.|++.
T Consensus 104 ~~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 0111 1333343332111111111 2566 788999999999999 9999999999999875
Q ss_pred HHcCCEEEEEecCCc
Q 043954 662 VRTGRTTVCTIHQPS 676 (1045)
Q Consensus 662 ~~~g~tvi~~~H~~~ 676 (1045)
. ++.++|+++|++.
T Consensus 162 ~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMS 175 (354)
T ss_dssp T-TTEEEEEEESCSC
T ss_pred c-CCCEEEEEeCCHH
Confidence 3 4688999999976
No 143
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.02 E-value=2.7e-14 Score=148.98 Aligned_cols=56 Identities=11% Similarity=0.218 Sum_probs=43.6
Q ss_pred HHH-HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEEEe
Q 043954 626 IAV-ELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 626 ia~-aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 690 (1045)
.++ +++.+|++++|||+|+++|..+.+.|.+.|++..++ +...|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888899999999999999999999999887654 2334521 5789988775
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.97 E-value=6.5e-13 Score=151.65 Aligned_cols=170 Identities=11% Similarity=0.096 Sum_probs=114.1
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCCC----------CCeEEEEEEECCeeCCc----ccccccc---eEeecCCcc
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKT----------GGIIQGEIRVGGYPKVQ----KTFARIS---GYCEQTDIH 560 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~----------~~~~~G~I~~~g~~~~~----~~~~~~~---~~v~q~~~~ 560 (1045)
.+++|+.++|+|+||||||||+|+|+|... -.|..|.+.++|..... ...++.+ ..+.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 668899999999999999999999999321 12568999998853211 0111222 356676777
Q ss_pred CCCCCHHHHH--HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--Ce
Q 043954 561 SPQITVEESV--KFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNP--SI 636 (1045)
Q Consensus 561 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p--~i 636 (1045)
....+..|++ .|...++. ++.++..++..+ +..+ ..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~i-----~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAEI-----IHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTCS-----SCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--ccee-----eeecccc------------Ccchhh
Confidence 7766665554 33322221 011111111111 1111 2355543 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEecCCcHHHHHhcceEE-EEecCc-EEEEecCCC
Q 043954 637 IFMDEPTSGLDARAAAIVMRAVKNV-VRTGRTTVCTIHQPSIDVFEAFDELL-LMKAGG-RIIYSGMLG 702 (1045)
Q Consensus 637 llLDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~~~~~~d~v~-~l~~gG-~~~~~G~~~ 702 (1045)
+++|||+.++|+......++.++++ .+.|.|++ +|... ++.+.||++. +|. .| ++++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCC
Confidence 9999999999999999999999988 66677754 99865 6788999999 787 58 888777764
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.96 E-value=7.6e-12 Score=141.37 Aligned_cols=153 Identities=18% Similarity=0.113 Sum_probs=96.8
Q ss_pred cccccccccceecCc-------eEEEEecCCCCCHHHHHHHHhCCCCC--CeEEEEEEECCeeCCc---ccccccceEee
Q 043954 488 KLQLLHDITGAFRPG-------ILTALMGVSGAGKTTLMDVLSGRKTG--GIIQGEIRVGGYPKVQ---KTFARISGYCE 555 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~G-------e~~~i~G~sGaGKSTLl~~l~G~~~~--~~~~G~I~~~g~~~~~---~~~~~~~~~v~ 555 (1045)
...+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.+.++.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 346899999999987 89999999999999999999996521 1456766665544321 11134578998
Q ss_pred cCCccCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 043954 556 QTDIHSPQITVEESVKFSAWLRLPP-EIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNP 634 (1045)
Q Consensus 556 q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p 634 (1045)
|.+.+.+ ++.|++.......... ........+.++..++.+++.. .++..+ .||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~-----~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSG-----LLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGG-----GSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcc-----cCCHHHHHhcCce-------
Confidence 8776654 7888885432211100 0001111223444444455543 444443 6999999998655
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 043954 635 SIIFMDEPTSGLDARAAAIVMRAVKNVVRT 664 (1045)
Q Consensus 635 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 664 (1045)
.+||+.+..++.+.|++.++.
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHH
Confidence 778888899999999987654
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.95 E-value=1e-12 Score=144.01 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=95.5
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccccceEeecCC-ccCCC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---TFARISGYCEQTD-IHSPQ 563 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~ 563 (1045)
...+++++++.+++| ++|.||||||||||+|+|+|.... |.|.++|.++... ...+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 999999999999999999997652 7899999765321 1234567777753 34555
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 043954 564 ITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPT 643 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPt 643 (1045)
+++.|++......+ .... . + .+....+..+ ..|||||+||+.|++|+..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-----~~~~----~----~--~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-----SDRE----T----G--ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-----CCCc----c----h--HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 66666664322111 0000 0 0 1222334444 259999999999999999999985 8886
Q ss_pred C------------CCCHHHHHHHHHHH
Q 043954 644 S------------GLDARAAAIVMRAV 658 (1045)
Q Consensus 644 s------------gLD~~~~~~i~~~l 658 (1045)
. -.|...+.+|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3 23555665555443
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.93 E-value=1.1e-10 Score=129.04 Aligned_cols=118 Identities=22% Similarity=0.254 Sum_probs=67.4
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCcc-ccccc-ceEeecCCccCC----CCCHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRV---GGYPKVQK-TFARI-SGYCEQTDIHSP----QITVE 567 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~---~g~~~~~~-~~~~~-~~~v~q~~~~~~----~lTv~ 567 (1045)
+++.+|++++|+||||+|||||+|+|+|... +.+|+|.+ +|+..+.. ...+. .+|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 6778999999999999999999999999876 56899998 77654321 12222 799999886655 6899
Q ss_pred HHHH--HHh------hhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHH
Q 043954 568 ESVK--FSA------WLRLPPEIDSETKARFVEEVIETIELDDI-KDSLVGIPGQSGLSTEQRKR 623 (1045)
Q Consensus 568 e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqR 623 (1045)
|++. |.. .++........+....++++++.++|.+. .+... .++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~------~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV------EFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH------HHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH------HHHHHHhhc
Confidence 8883 321 11211101111122347889999999764 33333 477787763
No 148
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.86 E-value=3.1e-10 Score=126.08 Aligned_cols=103 Identities=18% Similarity=0.265 Sum_probs=67.1
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCccc--c-cccceEeecCCc-----------
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRV---GGYPKVQKT--F-ARISGYCEQTDI----------- 559 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~---~g~~~~~~~--~-~~~~~~v~q~~~----------- 559 (1045)
+++.+|++++|+||||||||||+|+|+|+.. +.+|+|.+ +|++..... . .+.+|+++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 4566899999999999999999999999887 57899999 887754311 1 135799999864
Q ss_pred -----cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccc
Q 043954 560 -----HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELD-DIKDSLV 608 (1045)
Q Consensus 560 -----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~v 608 (1045)
++|.+|+ ||+.|.. +. . ..+...+++++++.++|+ +..+...
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 5888999 9988753 11 1 112234578999999995 5566554
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.84 E-value=7.4e-10 Score=118.84 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=44.2
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHH-------HHHhcceEEEEec
Q 043954 632 SNPSIIFMDEPTSGL--DARAAAIVMRAVKNVV-RTGRTTVCTIHQPSID-------VFEAFDELLLMKA 691 (1045)
Q Consensus 632 ~~p~illLDEPtsgL--D~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~-------~~~~~d~v~~l~~ 691 (1045)
.+|+++++|||++.+ |+....+.+..|.+++ +.|.|+|+++|..... +.+.+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6544556666666654 5589999999986531 3567899999964
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.80 E-value=2e-09 Score=119.27 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=78.5
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFS 573 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 573 (1045)
.+++..++|++++|+|||||||||+++.|++... +..|+|.+.+.+.. +. + ..|.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~-----r~-~-------------a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTF-----RA-A-------------AIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTT-----CH-H-------------HHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccc-----cH-H-------------HHHH----
Confidence 3566678999999999999999999999999764 23467777654421 10 0 0111
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHHH
Q 043954 574 AWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRL---TIAVELVSNPSIIFMDEPTSGLDARA 650 (1045)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv---~ia~aL~~~p~illLDEPtsgLD~~~ 650 (1045)
...+.+.++++. + ...|||+.+++ ++++++..+|+++++|||.. ...
T Consensus 151 -----------------L~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~ 200 (306)
T 1vma_A 151 -----------------LKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHT 200 (306)
T ss_dssp -----------------HHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSC
T ss_pred -----------------HHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhh
Confidence 223344455532 1 24689999999 99999999999999999974 334
Q ss_pred HHHHHHHHHHHH
Q 043954 651 AAIVMRAVKNVV 662 (1045)
Q Consensus 651 ~~~i~~~l~~l~ 662 (1045)
...+++.|+++.
T Consensus 201 ~~~l~~eL~~l~ 212 (306)
T 1vma_A 201 KKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666665554
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.80 E-value=4.4e-09 Score=123.68 Aligned_cols=179 Identities=12% Similarity=0.146 Sum_probs=109.6
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEEECCeeCCccccc-ccceEeecCCccCCCCCH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQG-EIRVGGYPKVQKTFA-RISGYCEQTDIHSPQITV 566 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G-~I~~~g~~~~~~~~~-~~~~~v~q~~~~~~~lTv 566 (1045)
...|+++.+-+++|+++.|.|++|+|||||+..+++... +..| .|.+-+.+....... +..+.... ...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH
Confidence 357899998999999999999999999999999987432 1123 344433222211111 11110000 000
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCeEEEeCCCC
Q 043954 567 EESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELV--SNPSIIFMDEPTS 644 (1045)
Q Consensus 567 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~--~~p~illLDEPts 644 (1045)
+.+ +. ...+.++ .+++.+.++.++..+.. +-+. .++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~l------~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~d~--~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QNL------RT-GKLTPED-WGKLTMAMGSLSNAGIY---IDDT--PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HHH------HT-SCCCHHH-HHHHHHHHHHHHSSCEE---EECC--TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HHH------hc-CCCCHHH-HHHHHHHHHHHhcCCEE---EECC--CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 111 11 1233333 23455555555433322 1111 268999987 5677776 6899999999999
Q ss_pred CCCH--------HHHHHHHHHHHHHHHc-CCEEEEEec---------C--CcH-------HHHHhcceEEEEecC
Q 043954 645 GLDA--------RAAAIVMRAVKNVVRT-GRTTVCTIH---------Q--PSI-------DVFEAFDELLLMKAG 692 (1045)
Q Consensus 645 gLD~--------~~~~~i~~~l~~l~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~v~~l~~g 692 (1045)
..++ ....++.+.|++++++ |.+||+++| + |.. .+...+|.+++|.++
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 7742 3346778888888865 899999999 2 421 356679999999753
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.74 E-value=1.6e-08 Score=111.73 Aligned_cols=118 Identities=16% Similarity=0.058 Sum_probs=82.2
Q ss_pred ccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHH
Q 043954 493 HDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 493 ~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
++++++ +|++++++|+||+||||+++.|+|... +..|+|.+.+.+.... +.. +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~------~~~-------------~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRP------AAR-------------EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCH------HHH-------------HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccH------hHH-------------HHH--
Confidence 678888 999999999999999999999999765 2357787776553210 000 000
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHH
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP-TSGLDARAA 651 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP-tsgLD~~~~ 651 (1045)
..+.+..++..... + .+-...+.+|.+|+++...+++++++||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432210 0 12345567899999998899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 043954 652 AIVMRAVKNV 661 (1045)
Q Consensus 652 ~~i~~~l~~l 661 (1045)
.++.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887777654
No 153
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.70 E-value=1.8e-09 Score=120.28 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=67.9
Q ss_pred ccccccccee-------------------cCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCcccc
Q 043954 490 QLLHDITGAF-------------------RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRV---GGYPKVQKTF 547 (1045)
Q Consensus 490 ~iL~~vs~~i-------------------~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~---~g~~~~~~~~ 547 (1045)
++++++|+.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ +|..... ..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QV 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HH
Confidence 5899999988 99999999999999999999999996541124799999 8876432 22
Q ss_pred cccceEeecCCccCCCCCHHHHHHHHhhhc
Q 043954 548 ARISGYCEQTDIHSPQITVEESVKFSAWLR 577 (1045)
Q Consensus 548 ~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 577 (1045)
++.++++ |...+.+.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 3457888 7777778889999998765543
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.68 E-value=3.9e-10 Score=132.49 Aligned_cols=164 Identities=10% Similarity=0.098 Sum_probs=96.9
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhC--CCCCCeEEEEEEECCeeCCcccccccceEeecCCccCC--CCCHHHH
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSP--QITVEES 569 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G--~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~--~lTv~e~ 569 (1045)
.+++++.++..++|.|++||||||+++.|.. .... ..|++.+.+.|.+...+...-+ +| .+.. --.+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~~~~-lP---hl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSVYEG-IP---HLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGGGTT-CT---TBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhhhcc-CC---cccceeecCHHHH
Confidence 4677888899999999999999999999875 2321 2355665555533211111000 01 1100 0112221
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCCCCCCCCHHHHHHH----------HHHHHHhhCCC-e
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDS--LVGIPGQSGLSTEQRKRL----------TIAVELVSNPS-I 636 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~--~vg~~~~~~LSgGqrqRv----------~ia~aL~~~p~-i 636 (1045)
...-.+ ..++.++| .+.++..|+.+..+. .+. ..+||||+||. .+++++...|. +
T Consensus 233 ~~~L~~-------~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 233 ANALRW-------CVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHH-------HHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHH-------HHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 111111 12233344 367788887765332 221 13688887652 35666778898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc----CCEEEEEecCCc
Q 043954 637 IFMDEPTSGLDARAAAIVMRAVKNVVRT----GRTTVCTIHQPS 676 (1045)
Q Consensus 637 llLDEPtsgLD~~~~~~i~~~l~~l~~~----g~tvi~~~H~~~ 676 (1045)
+++||+++-+|.. ...+.+.+.++++. |.++|++||+|+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999998843 35566777766554 668999999997
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.66 E-value=4.2e-11 Score=131.60 Aligned_cols=125 Identities=17% Similarity=0.216 Sum_probs=82.0
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccccceEeecCCc-cCCC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---TFARISGYCEQTDI-HSPQ 563 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ 563 (1045)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.... ...+.+++++|... ..+.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 346899999999999 99999999999999999999764 57888888653211 12234566676532 4566
Q ss_pred CCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCe
Q 043954 564 ITVEESVKFSAWLRLPP-EIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSI 636 (1045)
Q Consensus 564 lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~i 636 (1045)
+++.|++......+... ....++..+.+.+++. .|||||+||+.+++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 77778875322111100 0001112222333221 4899999999999999999976
No 156
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.66 E-value=5.3e-11 Score=127.07 Aligned_cols=39 Identities=28% Similarity=0.239 Sum_probs=22.9
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHh-CCCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLS-GRKT 527 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~-G~~~ 527 (1045)
.+..+++|+++++|++++|+||||||||||+++|+ |..+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35789999999999999999999999999999999 9865
No 157
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.63 E-value=5.8e-08 Score=109.75 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCCEEEEEecCCcH-----
Q 043954 622 KRLTIAVELVSN--PSIIFMDEPTSGL----------DA---RAAAIVMRAVKNV----VRTGRTTVCTIHQPSI----- 677 (1045)
Q Consensus 622 qRv~ia~aL~~~--p~illLDEPtsgL----------D~---~~~~~i~~~l~~l----~~~g~tvi~~~H~~~~----- 677 (1045)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|.|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223445555555 3459999999996431
Q ss_pred ----------HHHHhcceEEEEecCcEEEEecC
Q 043954 678 ----------DVFEAFDELLLMKAGGRIIYSGM 700 (1045)
Q Consensus 678 ----------~~~~~~d~v~~l~~gG~~~~~G~ 700 (1045)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14467888888874 55555454
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.63 E-value=6e-11 Score=128.46 Aligned_cols=124 Identities=17% Similarity=0.215 Sum_probs=80.7
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccccceEeecCC-ccCCCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---TFARISGYCEQTD-IHSPQI 564 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~l 564 (1045)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|.. ...+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 46899999999999 99999999999999999999764 47888887653211 1123355666653 244566
Q ss_pred CHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCe
Q 043954 565 TVEESVKFSAWLRLPP-EIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSI 636 (1045)
Q Consensus 565 Tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~i 636 (1045)
++.|++......+... ....++..+.+.+++. .|||||+||+.+++++..+|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh
Confidence 7777774322111100 0011122222333332 4789999999999999999986
No 159
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.58 E-value=6e-09 Score=107.50 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 043954 622 KRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKN 660 (1045)
Q Consensus 622 qRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 660 (1045)
++..+|++++.+|+++++| ||++|.....++.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999988865
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.58 E-value=1.2e-09 Score=133.21 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=96.9
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCc--------
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDI-------- 559 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~-------- 559 (1045)
...+++++++.+++|+.++|+||||+|||||+++|+|..++ ...|.+.+++.+... ....++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 45689999999999999999999999999999999998763 234888888876432 2234677776321
Q ss_pred --------------cCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHH
Q 043954 560 --------------HSPQITVEESVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLT 625 (1045)
Q Consensus 560 --------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ 625 (1045)
.+..+++.+|+.....-..+...-.+ ...... +.+|..+...... .++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~---~L~G~~~~~~~~~-----g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAG---ALLGDVRHDPFQS-----GGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHH---HHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHH---hcCceEEechhhc-----CCcccccccccc
Confidence 11111111111100000000000000 000011 1112111111111 269999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 043954 626 IAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKN 660 (1045)
Q Consensus 626 ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 660 (1045)
.++....++.+|+|||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899888888777764
No 161
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.57 E-value=5.6e-09 Score=121.88 Aligned_cols=52 Identities=21% Similarity=0.140 Sum_probs=47.4
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKV 543 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~ 543 (1045)
..+|+|+|+++++ |+++|+|||||||||||++|+|+.+ |.+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 4589999999999 9999999999999999999999877 56899999998753
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.52 E-value=7.4e-09 Score=107.82 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=43.6
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccccceEeecCCccCCCCCHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---TFARISGYCEQTDIHSPQITVE 567 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~~~~~~~~v~q~~~~~~~lTv~ 567 (1045)
|+++++|++++|+||||||||||+++|+|..+ .+.+++...... ..++.++|++|++..++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKE 69 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhc
Confidence 56778999999999999999999999999753 345555443221 1244578999866544443333
No 163
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.49 E-value=9.4e-08 Score=105.52 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=82.7
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHHHHHHhhhcCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEESVKFSAWLRLP 579 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~ 579 (1045)
++|++++++||||+||||+++.|++... +.+| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 5799999999999999999999998654 1123 12445555431 234555544321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 043954 580 PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVK 659 (1045)
Q Consensus 580 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~ 659 (1045)
+..|++.. . ..+. +.-+.++++ +.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11233211 0 1122 334555654 4999999999 99999876655544443
Q ss_pred HHH---HcCCEEEE-EecCCcHHHHHhcceEEEEecCcEEEEe
Q 043954 660 NVV---RTGRTTVC-TIHQPSIDVFEAFDELLLMKAGGRIIYS 698 (1045)
Q Consensus 660 ~l~---~~g~tvi~-~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 698 (1045)
-+. ..+.++++ ++|... ++.+.+|++..+.. +.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEe
Confidence 322 12223444 377643 56677777665554 455554
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.40 E-value=1.9e-09 Score=122.64 Aligned_cols=143 Identities=12% Similarity=0.125 Sum_probs=82.4
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCc-cCCCCCHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDI-HSPQITVE 567 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~-~~~~lTv~ 567 (1045)
.++|+++|+.+++|++++|.||||||||||+++|+|.. .|++..-+.+ ....+..+++++|... ++.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999853 3666541111 1112224677777653 22232221
Q ss_pred HHHHHHhhhc-CCCCCCHHHHHHHHHHHHHH---cCCCc-cc---cccc--c--CCCCCCCCHHHHHHHHHHHHHhhCCC
Q 043954 568 ESVKFSAWLR-LPPEIDSETKARFVEEVIET---IELDD-IK---DSLV--G--IPGQSGLSTEQRKRLTIAVELVSNPS 635 (1045)
Q Consensus 568 e~l~~~~~~~-~~~~~~~~~~~~~v~~~l~~---l~L~~-~~---~~~v--g--~~~~~~LSgGqrqRv~ia~aL~~~p~ 635 (1045)
.++ .+ .... ........+.+.++- +.+.. .. +... | +.....+++|++||+..+.+++.+|+
T Consensus 229 ~~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pD 302 (377)
T 1svm_A 229 GGE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDY 302 (377)
T ss_dssp TTT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHH
T ss_pred HHH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCC
Confidence 110 01 0000 110011123333330 00110 00 0000 0 00123589999999999888889999
Q ss_pred eEE-EeCCCC
Q 043954 636 IIF-MDEPTS 644 (1045)
Q Consensus 636 ill-LDEPts 644 (1045)
+++ ||+|+.
T Consensus 303 LliyLd~~~~ 312 (377)
T 1svm_A 303 LKHCLERSEF 312 (377)
T ss_dssp HHHHHHTCTH
T ss_pred eEEEEeCCHH
Confidence 877 999987
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.27 E-value=8.5e-07 Score=91.67 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 043954 624 LTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV 662 (1045)
Q Consensus 624 v~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~ 662 (1045)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.27 E-value=8.5e-07 Score=103.88 Aligned_cols=113 Identities=22% Similarity=0.368 Sum_probs=76.6
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHH
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
..++++++.+++| +.|.||+|+|||||+++|++.... +. +.+++ .+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-~f---~~is~-----------------~~~---------- 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-PF---FHISG-----------------SDF---------- 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-CE---EEEEG-----------------GGT----------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-Ce---eeCCH-----------------HHH----------
Confidence 4677888888888 889999999999999999974321 00 00000 000
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC-------
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEP------- 642 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEP------- 642 (1045)
.+..+| .|++++|-.+++|....|.||++||+
T Consensus 86 ----------------------------------~~~~~g-------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r 124 (476)
T 2ce7_A 86 ----------------------------------VELFVG-------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124 (476)
T ss_dssp ----------------------------------TTCCTT-------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-
T ss_pred ----------------------------------HHHHhc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhc
Confidence 000111 36788888999999999999999999
Q ss_pred ---CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEecCCc
Q 043954 643 ---TSGLDARAAAIVMRAVKNVV----RTGRTTVCTIHQPS 676 (1045)
Q Consensus 643 ---tsgLD~~~~~~i~~~l~~l~----~~g~tvi~~~H~~~ 676 (1045)
++|.|......+.++++.+. +.+..+|.+||+++
T Consensus 125 ~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 125 GAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp --------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred ccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 44777777777777777763 24678899999874
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.26 E-value=4.2e-07 Score=102.40 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=41.1
Q ss_pred cccccc--ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEE-EEECCeeCCcccccccceEeecC
Q 043954 491 LLHDIT--GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGE-IRVGGYPKVQKTFARISGYCEQT 557 (1045)
Q Consensus 491 iL~~vs--~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~-I~~~g~~~~~~~~~~~~~~v~q~ 557 (1045)
-|+.+- +-+++|+++.|.||+|||||||+..+++... +..|. +++++.......+.+.+|+.+|+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKS 115 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGG
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhh
Confidence 455543 4799999999999999999999999987532 11243 35555432222223344554443
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.25 E-value=1.1e-06 Score=99.92 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=86.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCC---------CeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH---HHH
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRKTG---------GIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE---SVK 571 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~~~---------~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e---~l~ 571 (1045)
.++|+|++|||||||+|.|+|.... ++.+|.|.++|.+.. .....|++.+.+. ..|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHHHHH
Confidence 3999999999999999999996431 145799999986532 2233566554221 11211 111
Q ss_pred HHh--hh--c-CC-CCCC--HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCeEE
Q 043954 572 FSA--WL--R-LP-PEID--SETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIA----VEL-VSNPSIIF 638 (1045)
Q Consensus 572 ~~~--~~--~-~~-~~~~--~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia----~aL-~~~p~ill 638 (1045)
... .+ . .+ .... ..+..+.+.++++.+++.+..--.+++.- ..+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~-Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKI-DKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECG-GGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECC-CCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 100 00 0 00 1111 12223345677887776554311122111 13688888988887 555 334454
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH
Q 043954 639 MDEPTSGLDARAAAIVMRAVKNVVR 663 (1045)
Q Consensus 639 LDEPtsgLD~~~~~~i~~~l~~l~~ 663 (1045)
+|+|++|......+.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988654
No 169
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.16 E-value=4.3e-08 Score=103.60 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=38.7
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-----------cccccceEeecC
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK-----------TFARISGYCEQT 557 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~-----------~~~~~~~~v~q~ 557 (1045)
++++.+ ++++|+|||||||||||++|+|... |.+|+|.++|.+.... ..++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 8999999999999999999999876 4689999999775211 123456888873
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.15 E-value=1.4e-07 Score=97.96 Aligned_cols=57 Identities=21% Similarity=0.140 Sum_probs=38.9
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc--cccccceEeecCC
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK--TFARISGYCEQTD 558 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~--~~~~~~~~v~q~~ 558 (1045)
.+..++|++++|+||||||||||+++|+|.. |.+.++|.+.... ..+...++++|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 3566789999999999999999999999854 6788888664321 1122357777643
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.09 E-value=2.4e-06 Score=106.60 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE-ecCCcHHHHHhcceEEEE
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMDEPTS-GLDARAAAIVMRAVKNVVRTGRTTVCT-IHQPSIDVFEAFDELLLM 689 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~-~H~~~~~~~~~~d~v~~l 689 (1045)
-+|+|+.+|..+++.++.+++++++|||.. +||......+++.+.+...+.++++++ ||++. ++.+.+++.-++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 379999999999999999999999999996 999887777766666544445677775 78754 566777654333
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.08 E-value=3.5e-06 Score=94.20 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=82.2
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHH
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.- +++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fSl------Ems~~q- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFSL------EMSAEQ- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEES------SSCHHH-
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEeC------CCCHHH-
Confidence 45777777899999999999999999999988875321 0 11 11233321 122222
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDAR 649 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~ 649 (1045)
...++......+.+.+..+ | .||++|.+|++.|...+.++++++.|+|...
T Consensus 89 -----------------l~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 89 -----------------LALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp -----------------HHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred -----------------HHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 1112211222122221111 2 5999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHHc--CCEEEEEec
Q 043954 650 AAAIVMRAVKNVVRT--GRTTVCTIH 673 (1045)
Q Consensus 650 ~~~~i~~~l~~l~~~--g~tvi~~~H 673 (1045)
..+|...++++.++ |..+|++-|
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33666777777654 566666644
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.02 E-value=7.2e-07 Score=95.79 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=35.7
Q ss_pred eEEEece-EEEEecCccccccccccccccccccccceecC---ceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 463 TMAFKDV-RYFVDTPPAMRKQGFNEKKLQLLHDITGAFRP---GILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 463 ~l~~~~l-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++++|+ ++.+. +++++|+|+|+++++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678888 77541 235699999999999 9999999999999999999999854
No 174
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.01 E-value=5.3e-08 Score=114.70 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=82.3
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccccceEeecCCc-cCCCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQK---TFARISGYCEQTDI-HSPQI 564 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~l 564 (1045)
..+++++++.+++| +.|.||||+|||||+++|+|... .+.+.++|.+.... ...+.+..++|... ..+..
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 45799999999999 99999999999999999999764 46788888664321 11123445555432 33444
Q ss_pred CHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 043954 565 TVEESVKFSAWLRLP-PEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPT 643 (1045)
Q Consensus 565 Tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPt 643 (1045)
.+.|++......+.. .....++..+.+.+++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 555555321111110 00112223333444443 3678888888888888899987 78876
Q ss_pred C
Q 043954 644 S 644 (1045)
Q Consensus 644 s 644 (1045)
.
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 4
No 175
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.91 E-value=1.2e-05 Score=91.35 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--cCC
Q 043954 615 GLSTEQRKRLTIAVELVSNPSIIFMD-EPTSGLDARAAAIVMRAVKNVVRTGRTTVCTI--HQP 675 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL~~~p~illLD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~--H~~ 675 (1045)
.+|+||+|++. +.+...++-++++| ++++++|......+.+.+++... +..+|++. ||.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 58999999887 55556777889999 99999999998888887776543 67788877 654
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.87 E-value=5.6e-06 Score=85.87 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=26.7
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999874
No 177
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.83 E-value=2e-06 Score=92.80 Aligned_cols=62 Identities=21% Similarity=0.111 Sum_probs=46.2
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHh---CCCCCCeEEEEEE--------ECCeeCCc----ccccccceEee
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLS---GRKTGGIIQGEIR--------VGGYPKVQ----KTFARISGYCE 555 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~---G~~~~~~~~G~I~--------~~g~~~~~----~~~~~~~~~v~ 555 (1045)
++++.+ ++|++++|+|||||||||++++|+ |... +++|.+. .+|.+... ...++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 455544 789999999999999999999999 8765 6789998 88877532 23445678888
Q ss_pred cC
Q 043954 556 QT 557 (1045)
Q Consensus 556 q~ 557 (1045)
|.
T Consensus 94 ~~ 95 (252)
T 4e22_A 94 VS 95 (252)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.83 E-value=7.2e-06 Score=100.59 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=74.3
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccccceEeecCCccCCCCCHHHHHHH
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQ---KTFARISGYCEQTDIHSPQITVEESVKF 572 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 572 (1045)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|..... ...++.+++..|...+... +++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~----- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR----- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE-----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE-----
Confidence 3467899999999999999999999999754321245766 45544322 1122334454443222110 000
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 043954 573 SAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 652 (1045)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~ 652 (1045)
.+..|+. |...++ .......-..+..++++| |+.|+|+.+..
T Consensus 76 ----------------------------~nliDTp----G~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 76 ----------------------------VFLLDAP----GYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------EEEEECC----CSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------EEEEeCC----CccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 0112221 111121 111222235678889999 99999988773
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCc
Q 043954 653 IVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 653 ~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.++.+.+.+..+|++.|..+
T Consensus 118 ----~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 ----AWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ----HHHHHHHTTCCEEEEEECGG
T ss_pred ----HHHHHHHccCCEEEEecCCc
Confidence 33333445888888998765
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.80 E-value=3.6e-06 Score=93.79 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=41.9
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
+++++++.+++|++++++|+||+||||++..|++... +..|+|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3478999999999999999999999999999999765 3358888877664
No 180
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=7.7e-06 Score=84.67 Aligned_cols=39 Identities=23% Similarity=0.109 Sum_probs=24.5
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
....++|||+++++|++++|+|++||||||+.+.|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999754
No 181
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.75 E-value=5.8e-06 Score=84.61 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=24.1
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
|++++|+||||||||||+|+|+|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999775
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.75 E-value=4e-05 Score=87.07 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEec
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTG-RTTVCTIH 673 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H 673 (1045)
.++.++++..+++..+.+|+++++.-..+..|..+ ....+.++++...| +++++++.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999777774333344433 44566666665555 46666665
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.73 E-value=4.9e-06 Score=86.47 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHH-HHHhcceEEEEe
Q 043954 616 LSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSID-VFEAFDELLLMK 690 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-~~~~~d~v~~l~ 690 (1045)
.+.|+.+|..+++.+..+|+.+..+ ++.++|.....+.+.+++. .+.++|+.+|..... ....||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678899999999888888754333 3345566555555544332 356888888865421 246789988886
No 184
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.67 E-value=1.1e-05 Score=83.53 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=42.2
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE--EECCeeC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEI--RVGGYPK 542 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I--~~~g~~~ 542 (1045)
.....++.++..++|++++|+||||||||||+++|++... ..|.+ .++|.+.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 3456788888999999999999999999999999999763 23655 7776543
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.63 E-value=4.8e-05 Score=84.65 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=81.4
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHH
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEE 568 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 568 (1045)
.+-|+++.+-+++|+++.|.|++|+|||||+..++..... +| ..+.|+.- +++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~sl------E~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSL------EMGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEES------SSCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEEC------CCCHHH
Confidence 3468888888999999999999999999999888742110 01 11233321 123222
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 043954 569 SVKFSAWLRLPPEIDSETKARFVEEVIETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDA 648 (1045)
Q Consensus 569 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD~ 648 (1045)
-. .++......+.+.+..+ | ...||++|++|+..|...+.++++++.|+|...
T Consensus 111 l~------------------~R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NI------------------KRLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HH------------------HHHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HH------------------HHHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 21 11111111111111111 1 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHc-CCE--EEEEec
Q 043954 649 RAAAIVMRAVKNVVRT-GRT--TVCTIH 673 (1045)
Q Consensus 649 ~~~~~i~~~l~~l~~~-g~t--vi~~~H 673 (1045)
..++.+.++++.++ |.. +|++-|
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34566667776654 555 777665
No 186
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.63 E-value=2.2e-05 Score=79.66 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=32.2
Q ss_pred cc--ccccceecCceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 491 LL--HDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 491 iL--~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
.+ +++++.+.+| +++|+||||||||||+++|.+...
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 45 7889999999 999999999999999999998543
No 187
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.62 E-value=0.0001 Score=84.08 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=35.5
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCc
Q 043954 632 SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVR---TGRTTVCTIHQPS 676 (1045)
Q Consensus 632 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~---~g~tvi~~~H~~~ 676 (1045)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877655 4678899999874
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.61 E-value=1.1e-05 Score=85.52 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=35.5
Q ss_pred ccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 495 ITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 495 vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
-+...++|++++|.|+||||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 4456689999999999999999999999987 26788887763
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.60 E-value=0.00022 Score=78.39 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH----------HHHHHHHHHHHHH----cCCEEEEEecCCc---HHH
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTSGLDARA----------AAIVMRAVKNVVR----TGRTTVCTIHQPS---IDV 679 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPtsgLD~~~----------~~~i~~~l~~l~~----~g~tvi~~~H~~~---~~~ 679 (1045)
+++++.|..++.+...+|.+|++||+.+-++... ...++..+..... .+..+|.+++++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4677777778888888999999999987765322 2233333333211 1345677788653 334
Q ss_pred HHhcceEEE
Q 043954 680 FEAFDELLL 688 (1045)
Q Consensus 680 ~~~~d~v~~ 688 (1045)
.+.|++.+.
T Consensus 177 ~~R~~~~i~ 185 (297)
T 3b9p_A 177 LRRFTKRVY 185 (297)
T ss_dssp HHHCCEEEE
T ss_pred HhhCCeEEE
Confidence 445554433
No 190
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.58 E-value=2.2e-05 Score=79.87 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=29.1
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRV 537 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~ 537 (1045)
+|++++|+||||||||||+++|++..++ ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 6899999999999999999999997642 24555544
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.45 E-value=0.00056 Score=76.93 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=29.4
Q ss_pred cccccc-ceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 491 LLHDIT-GAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 491 iL~~vs-~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-|+.+- +-+++|+++.|.||+|+|||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 57999999999999999999999988873
No 192
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.45 E-value=1.2e-05 Score=89.31 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=36.1
Q ss_pred ccccccccccceecCce------EEEEecCCCCCHHHHHHHHhCCCC
Q 043954 487 KKLQLLHDITGAFRPGI------LTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 487 ~~~~iL~~vs~~i~~Ge------~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
+.++.|++++..+.+++ ++||+||||||||||+++|++...
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678999999998887 999999999999999999999654
No 193
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.42 E-value=0.00012 Score=80.89 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--EEEEEecCCcHHHHHhcceEE
Q 043954 616 LSTEQRKRLTIAVELV--SNPSIIFMDEPTSGLDARA-AAIVMRAVKNVVRT-GR--TTVCTIHQPSIDVFEAFDELL 687 (1045)
Q Consensus 616 LSgGqrqRv~ia~aL~--~~p~illLDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tvi~~~H~~~~~~~~~~d~v~ 687 (1045)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 899986 5566666 68889998 7899876 66777888888754 43 4455555543 3455555443
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.38 E-value=7e-05 Score=78.01 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=26.3
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
++|++++|+||||||||||++.|++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999875
No 195
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.35 E-value=2e-05 Score=94.00 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.0
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
..++++++++.+| +++|+|+|||||||||++|.+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3678999999999 999999999999999999954
No 196
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.31 E-value=0.00062 Score=75.97 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=29.3
Q ss_pred cccccc-ceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 491 LLHDIT-GAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 491 iL~~vs-~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.|+.+- +-+++|+++.|.||+|+|||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 355443 67999999999999999999999988763
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.30 E-value=3.1e-05 Score=80.26 Aligned_cols=42 Identities=24% Similarity=0.136 Sum_probs=33.1
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
..++|++++|+|+||||||||++.|++..+ +..|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 467899999999999999999999999654 224666665443
No 198
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.28 E-value=0.00017 Score=74.88 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=28.4
Q ss_pred ccceecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 495 ITGAFRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 495 vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+--.+++|++++|+|+|||||||+.+.|++..
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34467889999999999999999999999875
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.23 E-value=0.00011 Score=75.57 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=26.0
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999999998654
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.20 E-value=0.00036 Score=80.46 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=24.2
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
++.+++++||+|+||||++..|++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999997543
No 201
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.15 E-value=0.00011 Score=82.34 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=42.9
Q ss_pred eEEEeceEEEEecCccccccccccccccccc--------------cccceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 463 TMAFKDVRYFVDTPPAMRKQGFNEKKLQLLH--------------DITGAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 463 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.+.|+|+++.++. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 3568888886542 345677 89999999999999999999999999999874
No 202
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.14 E-value=0.00039 Score=80.98 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=48.8
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcceEEE-EecCcEEEEecCCC
Q 043954 632 SNPSIIFMDEPTSGLDA-RAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFDELLL-MKAGGRIIYSGMLG 702 (1045)
Q Consensus 632 ~~p~illLDEPtsgLD~-~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~v~~-l~~gG~~~~~G~~~ 702 (1045)
.+|++|++||+..-.+. .++..+...+.++.+.|+.+|+++|++..++....+++.- +. .|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6778889999888888999999999864322112222221 22 36667667665
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.12 E-value=0.00026 Score=78.19 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=26.8
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+.++++..+.|.||+|+|||||+++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999754
No 204
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.11 E-value=0.0002 Score=72.08 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=29.6
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
.+|++++|+|+|||||||+++.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 579999999999999999999999753 456666544
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.11 E-value=0.00039 Score=87.15 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=28.4
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
+.+++|+.++|.||||+|||||+++|+|...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999999999764
No 206
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.09 E-value=7.5e-05 Score=89.03 Aligned_cols=43 Identities=33% Similarity=0.452 Sum_probs=34.9
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEE-ECCee
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQG-EIR-VGGYP 541 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G-~I~-~~g~~ 541 (1045)
..+++|++++|+|+||||||||+++|+|...+ ..| ++. ++|.+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 36789999999999999999999999997652 344 574 77754
No 207
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.00096 Score=70.65 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhcc
Q 043954 617 STEQRKRLTIAVELVSNPSIIFMDEPTS-GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPSIDVFEAFD 684 (1045)
Q Consensus 617 SgGqrqRv~ia~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 684 (1045)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++.--+.....+.++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 456655553 33578999999999976 6777766545444443322234556654444433334443
No 208
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.06 E-value=0.00028 Score=69.28 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=24.5
Q ss_pred ccccceecCceEEEEecCCCCCHHHHHHHHh
Q 043954 493 HDITGAFRPGILTALMGVSGAGKTTLMDVLS 523 (1045)
Q Consensus 493 ~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~ 523 (1045)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3344555665 99999999999999999987
No 209
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.01 E-value=0.00053 Score=78.90 Aligned_cols=46 Identities=22% Similarity=0.052 Sum_probs=37.6
Q ss_pred ccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 043954 493 HDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPK 542 (1045)
Q Consensus 493 ~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~ 542 (1045)
+++++. +|++++++|+|||||||++..|++.... ..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 678887 8999999999999999999999996542 246777766554
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.99 E-value=0.00018 Score=81.65 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.1
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
++++.+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999754
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.99 E-value=0.00023 Score=71.30 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=24.2
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
.|++++|+||||||||||+++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998654
No 212
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.92 E-value=0.00011 Score=82.70 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=36.3
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
.+.+++++++.+++|.+++|+|++|+|||||++.|+|...
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999998653
No 213
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.79 E-value=0.0038 Score=72.70 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=75.4
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccccceEeecCCccCCCCCHHHH
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYPKVQKTFARISGYCEQTDIHSPQITVEES 569 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 569 (1045)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++...... . | ..+.|+.- +++..+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~------g---------~~vl~~sl------E~~~~~- 243 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--E------G---------VGVGIYSL------EMPAAQ- 243 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--T------C---------CCEEEEES------SSCHHH-
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--C------C---------CeEEEEEC------CCCHHH-
Confidence 4577777789999999999999999999998887532100 0 1 11233321 112211
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 043954 570 VKFSAWLRLPPEIDSETKARFVEEVIETIELD--DIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLD 647 (1045)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~LSgGqrqRv~ia~aL~~~p~illLDEPtsgLD 647 (1045)
...+... ...+++ ... -| .|+..+.+|+.-|...+.+.++.+.|+|.. +
T Consensus 244 -----------------l~~R~~~--~~~~i~~~~l~---~g-----~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s 294 (444)
T 2q6t_A 244 -----------------LTLRMMC--SEARIDMNRVR---LG-----QLTDRDFSRLVDVASRLSEAPIYIDDTPDL--T 294 (444)
T ss_dssp -----------------HHHHHHH--HHTTCCTTTCC---GG-----GCCHHHHHHHHHHHHHHHTSCEEEECCTTC--B
T ss_pred -----------------HHHHHHH--HHcCCCHHHHh---CC-----CCCHHHHHHHHHHHHHHhcCCEEEECCCCC--C
Confidence 1111111 112332 111 11 489999999988888888888888887643 3
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEec
Q 043954 648 ARAAAIVMRAVKNVVRT-GRTTVCTIH 673 (1045)
Q Consensus 648 ~~~~~~i~~~l~~l~~~-g~tvi~~~H 673 (1045)
. .++...++++.++ |..+|++-+
T Consensus 295 ~---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 295 L---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp H---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred H---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 2 3455556666543 555555543
No 214
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.76 E-value=0.0015 Score=65.42 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=23.3
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
No 215
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.68 E-value=0.00047 Score=82.56 Aligned_cols=49 Identities=24% Similarity=0.357 Sum_probs=41.4
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
..+++++++.+ +|+.++|+||||+|||||+++|++... +..|+|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 45788899988 899999999999999999999999765 45788877764
No 216
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.0023 Score=69.66 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.3
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999998754
No 217
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.64 E-value=0.009 Score=63.13 Aligned_cols=43 Identities=7% Similarity=0.080 Sum_probs=29.3
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecC
Q 043954 632 SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRT--GRTTVCTIHQ 674 (1045)
Q Consensus 632 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~ 674 (1045)
.+|+++++..+.+.++......+...++.+... ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 478999999988888887665555555443221 3578888883
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.64 E-value=0.00077 Score=69.24 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=32.1
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
..+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 358999999999985 789999999999999999873
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.62 E-value=0.00092 Score=70.62 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=26.4
Q ss_pred cccccceec---CceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 492 LHDITGAFR---PGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 492 L~~vs~~i~---~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
|.++|+.++ +|.+++|.|++||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566666665 899999999999999999999998654
No 220
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.60 E-value=0.0016 Score=66.22 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=27.4
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCCC------CCeEEEEEEECC
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKT------GGIIQGEIRVGG 539 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~------~~~~~G~I~~~g 539 (1045)
.+++++++..++. .++++|++|+|||||++.+.+... .++..+++.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 4789999998887 679999999999999999997321 123456666665
No 221
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.52 E-value=0.0037 Score=72.72 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=30.3
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.-|+.+.+-+++|+++.|.|++|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 45777777799999999999999999999877764
No 222
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.52 E-value=0.0021 Score=74.89 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=31.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCC------C----CeEEEEEEECCeeC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRKT------G----GIIQGEIRVGGYPK 542 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~~------~----~~~~G~I~~~g~~~ 542 (1045)
-.++|+|+||+|||||+|.|+|... + .+..|.+.++|.+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 4799999999999999999999642 1 13468999999753
No 223
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.49 E-value=0.0054 Score=68.15 Aligned_cols=46 Identities=4% Similarity=0.096 Sum_probs=35.6
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 631 VSNPSIIFMDEPTS-GLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 631 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
..++++|++||+.. .-|..+...+...+..+.+.|+.+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999866 23447788888999888777888888887653
No 224
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.45 E-value=0.0014 Score=67.80 Aligned_cols=30 Identities=30% Similarity=0.661 Sum_probs=24.3
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 344555665 999999999999999998863
No 225
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.44 E-value=0.0014 Score=66.56 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=26.3
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999864
No 226
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.44 E-value=0.0013 Score=66.35 Aligned_cols=27 Identities=41% Similarity=0.406 Sum_probs=24.3
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999864
No 227
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.43 E-value=0.0012 Score=69.17 Aligned_cols=56 Identities=20% Similarity=0.083 Sum_probs=38.2
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEE--------CCeeCCc----ccccccceEeecC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRKTG-GIIQGEIRV--------GGYPKVQ----KTFARISGYCEQT 557 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~~~-~~~~G~I~~--------~g~~~~~----~~~~~~~~~v~q~ 557 (1045)
+.+++|+|||||||||+.++|++.+.. .+.+|++.. +|.++.. ...++..++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999985421 145677766 5655431 1233456777764
No 228
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.43 E-value=0.00052 Score=77.38 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=30.8
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
+++..++|+|++|||||||+|.|+|... +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeec
Confidence 4688999999999999999999998643 224566555443
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.39 E-value=0.00055 Score=71.21 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=32.7
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEE--EEEECC
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQG--EIRVGG 539 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G--~I~~~g 539 (1045)
..+++|.+++|.|++||||||+.+.|++... +..| .+.++|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 4568899999999999999999999998654 2345 566654
No 230
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.35 E-value=0.045 Score=61.51 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=28.4
Q ss_pred cccccc--ceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 491 LLHDIT--GAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 491 iL~~vs--~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 4689999999999999999999988774
No 231
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.33 E-value=0.0022 Score=67.23 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=42.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCcHHHHHhcceEEEEe
Q 043954 633 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIH---------QPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 633 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 690 (1045)
+|+++++||.-- |+. .+++.++.+++.|..||++-| ..+.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 664 355566777777999999999 56678889999999874
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.31 E-value=0.0015 Score=67.52 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=25.8
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
...+|.+++|+||||||||||.+.|+...+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999987553
No 233
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.28 E-value=0.012 Score=66.46 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.4
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
++..-+.|.||+|+|||||.+.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456689999999999999999998643
No 234
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.27 E-value=0.00088 Score=74.72 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=34.6
Q ss_pred ccccccccceecCceE--EEEecCCCCCHHHHHHHHhCCC
Q 043954 489 LQLLHDITGAFRPGIL--TALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~--~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..+++++++.+++|+. ++|+|++||||||+.++|++..
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3589999999999999 9999999999999999999853
No 235
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.26 E-value=0.0018 Score=67.98 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=31.2
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEecCC
Q 043954 632 SNPSIIFMDEPTSGL-DARAAAIVMRAVKNVVRTGRT-TVCTIHQP 675 (1045)
Q Consensus 632 ~~p~illLDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-vi~~~H~~ 675 (1045)
.+|.++++||.-.-- +......+.+.+.+..+.++. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965532 233377788888887776765 77777754
No 236
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.21 E-value=0.00044 Score=78.35 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=28.8
Q ss_pred cccccccccceecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 488 KLQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 488 ~~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
++.+++++++.| +|+|+||+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 456888998877 999999999999999998854
No 237
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.07 E-value=0.0062 Score=60.19 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 238
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.97 E-value=0.0026 Score=65.49 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G 524 (1045)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 239
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.94 E-value=0.0038 Score=70.93 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=34.0
Q ss_pred cceecCceEEEEecCCCCCHHHHHHHHhCCCC---------CCeEEEEEEECCe
Q 043954 496 TGAFRPGILTALMGVSGAGKTTLMDVLSGRKT---------GGIIQGEIRVGGY 540 (1045)
Q Consensus 496 s~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~---------~~~~~G~I~~~g~ 540 (1045)
-..++.|..++|+|+||+|||||+|.|+|... -.|..|.+.+.|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 44667888999999999999999999999621 1245688877663
No 240
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.92 E-value=0.0079 Score=60.50 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.87 E-value=0.028 Score=62.26 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=28.5
Q ss_pred cccccc-ceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 491 LLHDIT-GAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 491 iL~~vs-~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 6799999999999999999999988774
No 242
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.86 E-value=0.04 Score=61.08 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.3
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..|..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566789999999999999999999754
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.85 E-value=0.0039 Score=63.14 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=25.8
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..++|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999999754
No 244
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.0017 Score=72.84 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=34.8
Q ss_pred ccccccccceecCceE--EEEecCCCCCHHHHHHHHhCCC
Q 043954 489 LQLLHDITGAFRPGIL--TALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~--~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999998 9999999999999999999854
No 245
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.83 E-value=0.0072 Score=68.41 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.6
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999998643
No 246
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.82 E-value=0.0039 Score=62.78 Aligned_cols=38 Identities=37% Similarity=0.350 Sum_probs=28.1
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCC-CCeEEEEEEECCe
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRKT-GGIIQGEIRVGGY 540 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~~-~~~~~G~I~~~g~ 540 (1045)
.+++|+|+||||||||++.|.+... .+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5899999999999999999998532 1223466666553
No 247
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.77 E-value=0.0015 Score=71.88 Aligned_cols=46 Identities=22% Similarity=0.132 Sum_probs=36.0
Q ss_pred cc-ccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 043954 493 HD-ITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGYP 541 (1045)
Q Consensus 493 ~~-vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~~ 541 (1045)
++ ++++.+ |++++++|++|+||||++..|++... +..|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 46 888877 99999999999999999999998654 223566665544
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.72 E-value=0.0025 Score=68.25 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=34.7
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGGY 540 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g~ 540 (1045)
++++.+ ..+++.++.|+|+|||||||+.+.|+..... |.+.++|.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecH
Confidence 455555 6778899999999999999999999986531 34566653
No 249
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.68 E-value=0.018 Score=61.33 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.1
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++..-+.|.||+|+|||||.+.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999999864
No 250
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.67 E-value=0.0052 Score=62.03 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.5
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
No 251
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.61 E-value=0.097 Score=61.82 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=29.3
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
+-|+.+..-+++|+++.|.|++|+|||||+.-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 35666666799999999999999999999876664
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.59 E-value=0.0043 Score=63.81 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..+++|+|++||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998653
No 253
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.53 E-value=0.008 Score=68.22 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=26.4
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHh
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLS 523 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~ 523 (1045)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35566777775 99999999999999999986
No 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.51 E-value=0.0054 Score=65.61 Aligned_cols=34 Identities=26% Similarity=0.555 Sum_probs=24.8
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.+++++...++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 455666666666 8899999999999999999854
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.46 E-value=0.0069 Score=60.62 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.0
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
|.++.|.|++||||||+.+.|+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997553
No 256
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.42 E-value=0.0068 Score=60.13 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+++|.|++||||||+.+.|+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.28 E-value=0.0075 Score=63.72 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.9
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-++|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999999964
No 258
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.25 E-value=0.0081 Score=63.30 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.3
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999854
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.24 E-value=0.008 Score=60.55 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999853
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.19 E-value=0.096 Score=59.01 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=27.4
Q ss_pred cccccc--ceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 491 LLHDIT--GAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 491 iL~~vs--~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344433 3689999999999999999999877763
No 261
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.13 E-value=0.01 Score=60.14 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.7
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
+++.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
No 262
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.08 E-value=0.071 Score=70.74 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=29.2
Q ss_pred ccccccc--eecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 491 LLHDITG--AFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 491 iL~~vs~--~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-|+.+-. -+++|+++.|.||+|+|||||+..++..
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 3555543 6999999999999999999999988763
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.03 E-value=0.01 Score=60.38 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987544
No 264
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.02 E-value=0.011 Score=59.77 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999853
No 265
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.98 E-value=0.0095 Score=59.86 Aligned_cols=25 Identities=36% Similarity=0.278 Sum_probs=22.4
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++..+.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999984
No 266
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.90 E-value=0.036 Score=60.66 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.4
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHH
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVL 522 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l 522 (1045)
+=+++| ++.|.||+|+|||||+--+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHH
Confidence 568899 9999999999999995443
No 267
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.89 E-value=0.015 Score=59.29 Aligned_cols=53 Identities=17% Similarity=0.368 Sum_probs=41.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCcHHHHHhcceEEEEe
Q 043954 633 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIH---------QPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 633 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 690 (1045)
+.+++++||.-- +|+. +++.++++++.|..||++-+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 478999999654 6643 35677777777999999998 55677888999988774
No 268
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.84 E-value=0.013 Score=58.99 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.6
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999853
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.81 E-value=0.012 Score=62.99 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.3
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999754
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.72 E-value=0.014 Score=57.74 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEecCCCCCHHHHHHHH
Q 043954 504 LTALMGVSGAGKTTLMDVL 522 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l 522 (1045)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 271
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.70 E-value=0.016 Score=60.20 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.8
Q ss_pred CceEEEEecCCCCCHHHHHHHHhC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 272
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.11 Score=58.95 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=22.7
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
++|-.=+.+.||+|+|||+|.+++++..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3343448899999999999999999754
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.58 E-value=0.017 Score=59.06 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999754
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.58 E-value=0.016 Score=63.21 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=28.2
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIQGEIRVGG 539 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~~~~~~~G~I~~~g 539 (1045)
-..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 34678999999999999999999986443 13455554
No 275
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.57 E-value=0.016 Score=59.17 Aligned_cols=23 Identities=35% Similarity=0.526 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999754
No 276
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.55 E-value=0.01 Score=60.48 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.8
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
..++++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34566789999999999999999999854
No 277
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.53 E-value=0.069 Score=60.07 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.3
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++..-+.|.||+|+|||||.+.++...
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3455668999999999999999998643
No 278
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.50 E-value=0.019 Score=58.99 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998644
No 279
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.46 E-value=0.018 Score=59.27 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.4
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 280
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.15 Score=58.59 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=23.4
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
++|-.=+.|.||+|+|||+|.++|++..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4455568899999999999999999754
No 281
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.40 E-value=0.019 Score=58.30 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.2
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.38 E-value=0.02 Score=57.09 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEecCCCCCHHHHHHHHhC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 283
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.29 E-value=0.17 Score=57.61 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.4
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999998653
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.28 E-value=0.019 Score=57.31 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.+.|+|++||||||+.+.|+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998643
No 285
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.27 E-value=0.022 Score=58.18 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999864
No 286
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.22 E-value=0.021 Score=58.80 Aligned_cols=26 Identities=42% Similarity=0.481 Sum_probs=23.4
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++|.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 287
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.21 E-value=0.011 Score=61.15 Aligned_cols=24 Identities=54% Similarity=0.743 Sum_probs=21.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
+++|.|++||||||+++.|+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 288
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.16 E-value=0.021 Score=56.96 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+++|+|++|||||||++.|.+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999874
No 289
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.07 E-value=0.022 Score=61.52 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.01 E-value=0.023 Score=57.28 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
++.|.|++||||||+.+.|+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.00 E-value=0.027 Score=56.85 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceEEEEecCCCCCHHHHHHHHhC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 292
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.77 E-value=0.03 Score=61.42 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=31.3
Q ss_pred ccccccccceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 489 LQLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 489 ~~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45788887777 7899999999999999999998864
No 293
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.75 E-value=0.043 Score=55.21 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.5
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999976665
No 294
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.74 E-value=0.031 Score=58.07 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=22.3
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++|-.+.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
No 295
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.65 E-value=0.032 Score=56.55 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
No 296
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.65 E-value=0.024 Score=56.76 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=17.7
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999854
No 297
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.58 E-value=0.03 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999999854
No 298
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.56 E-value=0.032 Score=62.65 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=28.7
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCC---------CCCeEEEEEEECC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRK---------TGGIIQGEIRVGG 539 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~---------~~~~~~G~I~~~g 539 (1045)
|-.++|+|.+|+|||||+|.|+|.. +-++..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3468999999999999999999833 1124457777765
No 299
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.47 E-value=0.035 Score=54.69 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999999853
No 300
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.44 E-value=0.033 Score=56.17 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
-.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999854
No 301
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.44 E-value=0.036 Score=59.92 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 302
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.43 E-value=0.033 Score=57.02 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+++|.|++||||||+.+.|+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 303
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.39 E-value=0.032 Score=54.47 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 304
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.037 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 305
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.37 E-value=0.035 Score=57.99 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.7
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++..+.|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999853
No 306
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.32 E-value=0.15 Score=52.53 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCcHHHHHhcceEEEEe
Q 043954 633 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIH---------QPSIDVFEAFDELLLMK 690 (1045)
Q Consensus 633 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 690 (1045)
+.+++++||.-- +|+. .++.++++++.|..||++-+ .++.++++.+|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 578999999876 6643 23677777777999999999 67788899999998885
No 307
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.31 E-value=0.039 Score=57.04 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 308
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.27 E-value=0.04 Score=53.99 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998743
No 309
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.27 E-value=0.035 Score=55.63 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.4
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
-.++|+|++|+|||||++.+.+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999753
No 310
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.27 E-value=0.043 Score=56.06 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.7
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.+-+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999853
No 311
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.26 E-value=0.046 Score=55.88 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.6
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
...+++|.|++||||||+.+.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999853
No 312
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.23 E-value=0.039 Score=58.71 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999854
No 313
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.20 E-value=0.034 Score=63.45 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 633 NPSIIFMDEPTSGLD---ARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 633 ~p~illLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.|.++++||.-.=++ +..+..+.+.+++.++.|..++++||.++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 577899999888774 66777788888887777888999999876
No 314
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.19 E-value=0.039 Score=54.61 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 315
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.16 E-value=0.044 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+.++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
No 316
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.15 E-value=0.037 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 317
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.15 E-value=0.037 Score=53.83 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 318
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.13 E-value=0.049 Score=53.84 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.9
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+.-.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.12 E-value=0.044 Score=55.32 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 320
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.12 E-value=0.035 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 321
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.12 E-value=0.038 Score=53.82 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 322
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.05 E-value=0.038 Score=57.52 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.5
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999853
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.05 E-value=0.045 Score=56.58 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.03 E-value=0.039 Score=54.65 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 325
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.02 E-value=0.04 Score=55.52 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.0
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
-.++|+|++|+|||||++.|.|..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 326
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.01 E-value=0.24 Score=66.70 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=28.5
Q ss_pred cccccc--ceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 491 LLHDIT--GAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 491 iL~~vs--~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
-|+.+- +=+++|+++.|.||+|+|||||...++.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 466554 3699999999999999999999877764
No 327
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.99 E-value=0.05 Score=58.28 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 328
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.98 E-value=0.04 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 329
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.96 E-value=0.04 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 330
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.96 E-value=0.02 Score=62.76 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
...+.|.||+|+||||+.+.|++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3689999999999999999999854
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.95 E-value=0.049 Score=53.70 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
No 332
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.93 E-value=0.053 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.5
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
+++-.++|.||+||||||+.+.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999974
No 333
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.93 E-value=0.042 Score=53.69 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 334
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.92 E-value=0.039 Score=53.98 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 335
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.92 E-value=0.042 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 336
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.89 E-value=0.22 Score=51.95 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=44.3
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC---------CcHHHHHhcceEEEEe
Q 043954 632 SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQ---------PSIDVFEAFDELLLMK 690 (1045)
Q Consensus 632 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~---------~~~~~~~~~d~v~~l~ 690 (1045)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ ++.++++.+|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 566666666689999999999 8888899999999885
No 337
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.88 E-value=0.042 Score=54.28 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 338
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.86 E-value=0.032 Score=60.89 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=18.4
Q ss_pred CceEEEEecCCCCCHHHHHHHHhC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999985
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.85 E-value=0.041 Score=55.28 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.85 E-value=0.051 Score=54.67 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCCHHHHHHHHhC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 341
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.84 E-value=0.052 Score=55.40 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.3
Q ss_pred CceEEEEecCCCCCHHHHHHHHhC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
..-+++|+|++||||||+.+.|+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
No 342
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.84 E-value=0.048 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999999854
No 343
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.81 E-value=0.044 Score=54.31 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 344
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.77 E-value=0.086 Score=58.35 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
++.++.|+||+|||||||...|+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 466999999999999999999997653
No 345
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.77 E-value=0.047 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999853
No 346
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.71 E-value=0.85 Score=60.69 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=28.9
Q ss_pred ccccccc--ceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 490 QLLHDIT--GAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 490 ~iL~~vs--~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.-|+.+- +=+++|+++.|.||+|+|||||.-.++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3466665 3699999999999999999999877764
No 347
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.70 E-value=0.07 Score=54.36 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=28.0
Q ss_pred cccccccceecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 490 QLLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 490 ~iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..++..-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455554444 57889999999999999999998653
No 348
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.68 E-value=0.043 Score=54.28 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 349
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.59 E-value=0.056 Score=59.31 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.5
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 59999999999999999999853
No 350
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.58 E-value=0.05 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 351
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.55 E-value=0.055 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 352
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.55 E-value=0.057 Score=57.49 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.8
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 353
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.49 E-value=0.051 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 354
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.49 E-value=0.051 Score=54.77 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
No 355
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.48 E-value=0.057 Score=57.77 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 356
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.48 E-value=0.05 Score=58.71 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 357
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.42 E-value=0.054 Score=52.73 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
No 358
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.41 E-value=0.059 Score=54.15 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
.++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999998654
No 359
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.39 E-value=0.053 Score=55.14 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999763
No 360
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.38 E-value=0.053 Score=54.71 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999985
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.37 E-value=0.07 Score=55.48 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.0
Q ss_pred eecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 498 AFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 498 ~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
..++..++.|+||+||||+|..+.|+-.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456679999999999999999999854
No 362
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.36 E-value=0.054 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 363
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.33 E-value=0.032 Score=57.96 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=29.2
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 632 SNPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 632 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999866 7877777666666432 12456777787653
No 364
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.26 E-value=0.057 Score=53.68 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.2
Q ss_pred CceEEEEecCCCCCHHHHHHHHhC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999975
No 365
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.25 E-value=0.065 Score=58.97 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999853
No 366
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.21 E-value=0.058 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++++|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 367
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.21 E-value=0.053 Score=61.16 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.7
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 043954 505 TALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 505 ~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
No 368
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.20 E-value=0.055 Score=53.41 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 369
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.12 E-value=0.66 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
++.+++++|++|+||||++.-|+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998643
No 370
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.11 E-value=0.061 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 371
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.10 E-value=0.061 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999874
No 372
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.10 E-value=0.061 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 373
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.08 E-value=0.07 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=22.2
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+.=.++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
No 374
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.06 E-value=0.062 Score=56.32 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=21.2
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..+|.++.+.|++||||||+.+.|+...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998643
No 375
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.06 E-value=0.079 Score=52.76 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=22.8
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
No 376
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.04 E-value=0.07 Score=55.35 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.6
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+|-.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999853
No 377
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.97 E-value=0.081 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.5
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-.++++|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999763
No 378
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.95 E-value=0.074 Score=55.44 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 379
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.95 E-value=0.064 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.95 E-value=0.076 Score=57.60 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.4
Q ss_pred ceEEEEecCCCCCHHHHHHHHh
Q 043954 502 GILTALMGVSGAGKTTLMDVLS 523 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~ 523 (1045)
.-+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 381
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.93 E-value=0.086 Score=54.67 Aligned_cols=27 Identities=41% Similarity=0.569 Sum_probs=23.4
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.+|.++.+.|++||||||+.+.|+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999997643
No 382
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.89 E-value=0.072 Score=56.81 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 383
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.86 E-value=0.067 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 384
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.86 E-value=0.079 Score=56.71 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 385
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.85 E-value=0.088 Score=56.89 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=41.6
Q ss_pred hHHHHHH-HcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHH
Q 043954 2 EVIRKEK-EAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVL 53 (1045)
Q Consensus 2 ~~~~~~~-~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~ 53 (1045)
+.|++++ +.|+ ++|++-|.+. ++.++.|++++|.+|++++.|+++++.
T Consensus 184 ~~l~~l~~~~g~---tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 184 KLLVEMQKELGI---TIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHHHHHHHHCC---EEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHHHHhhCCC---EEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 5788887 6688 5599999997 788899999999999999999988764
No 386
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.84 E-value=0.063 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 387
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.84 E-value=0.074 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 388
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.83 E-value=0.072 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 389
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.79 E-value=0.054 Score=56.42 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHhhCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 043954 629 ELVSNPSIIFMDEPTSG-LDARAAAIVMRAVKNVVRTGRTTVCTIH 673 (1045)
Q Consensus 629 aL~~~p~illLDEPtsg-LD~~~~~~i~~~l~~l~~~g~tvi~~~H 673 (1045)
++..+|+++++||+-.- .+........+.+..+...|..++.++|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 34468999999997642 3322223333334445566888999988
No 390
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.79 E-value=0.069 Score=54.25 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 391
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.75 E-value=0.069 Score=54.34 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 392
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.73 E-value=0.077 Score=57.32 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 393
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.71 E-value=0.081 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 394
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.71 E-value=0.067 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 395
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.69 E-value=0.084 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 396
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.67 E-value=0.072 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 397
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.66 E-value=0.072 Score=53.95 Aligned_cols=21 Identities=38% Similarity=0.763 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 398
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.66 E-value=0.067 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 399
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.65 E-value=0.068 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 400
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.63 E-value=0.16 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 401
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.62 E-value=0.074 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 402
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.62 E-value=0.093 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.1
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
..+.|.||+|+|||||++.|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 403
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.61 E-value=0.068 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.59 E-value=0.082 Score=54.61 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.1
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999985
No 405
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.54 E-value=0.077 Score=52.75 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 406
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.49 E-value=0.083 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 407
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.48 E-value=0.093 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.|..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 408
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.45 E-value=0.051 Score=56.19 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 409
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.44 E-value=0.079 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 410
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.086 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.0
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+.=.++|+|++|+|||||++.+.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999999643
No 411
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.42 E-value=0.074 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999999843
No 412
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.37 E-value=0.089 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999843
No 413
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.36 E-value=0.092 Score=58.26 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.+++|.||+|||||||.+.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999755
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.34 E-value=0.1 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.7
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.+..+.|+|++||||||+.+.|+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999854
No 415
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.33 E-value=0.08 Score=54.69 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.8
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 416
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.32 E-value=0.055 Score=60.36 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 633 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 633 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
+++++++|| ...|++.....+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 778999888888887776432 344666676654
No 417
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.31 E-value=0.077 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999999843
No 418
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.31 E-value=0.079 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++++|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.30 E-value=0.084 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 420
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.26 E-value=0.098 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+|.+++|.|++||||||+.+.|+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998643
No 421
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.25 E-value=0.11 Score=56.89 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
+.+++|+||+|||||||.+.|+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999987553
No 422
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.23 E-value=0.081 Score=52.53 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 423
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.23 E-value=0.1 Score=56.98 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEecCCCCCHHHHHHHHhC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.22 E-value=0.086 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 425
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.21 E-value=0.094 Score=60.60 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=28.7
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+++.+ ..+-+|+..+|+|+||+|||||++.|++.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 55555 56678999999999999999999999864
No 426
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.20 E-value=0.08 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
No 427
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.17 E-value=0.092 Score=57.66 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.15 E-value=0.11 Score=59.71 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.4
Q ss_pred ecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 499 FRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 499 i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-.+.+++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999999999753
No 429
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.14 E-value=0.082 Score=53.90 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 430
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.14 E-value=0.087 Score=53.91 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=24.3
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..|+.+.-..--.++++|++|+|||||++.+.+..
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 34444443334479999999999999999999843
No 431
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.11 E-value=0.088 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 432
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.11 E-value=0.089 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
No 433
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.04 E-value=0.092 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 434
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.03 E-value=0.092 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.01 E-value=0.12 Score=53.82 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.7
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.+|.++.+.|++||||||+.+.|+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998643
No 436
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.97 E-value=0.093 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
=.++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 437
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.97 E-value=0.091 Score=52.17 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.6
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
No 438
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.94 E-value=0.11 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.9
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
++|.++.+-|++||||||+.+.|+....
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999987554
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.90 E-value=0.14 Score=50.89 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=25.1
Q ss_pred ccccccceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 491 LLHDITGAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 491 iL~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.+|..-.. ..|.-++|.|+||+|||||...|..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34443333 4588999999999999999988864
No 440
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.89 E-value=0.11 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 441
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.86 E-value=0.05 Score=58.27 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=24.7
Q ss_pred cccccceecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 492 LHDITGAFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 492 L~~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+++++...++| +.|.||+|+|||||++.|++.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34444455555 789999999999999999864
No 442
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.84 E-value=0.11 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=21.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
.++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998543
No 443
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.84 E-value=0.1 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.6
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+.=.++|+|++|+|||||++.+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3446999999999999999999764
No 444
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.81 E-value=0.1 Score=53.69 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 445
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.74 E-value=0.099 Score=56.84 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999954
No 446
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.73 E-value=0.094 Score=53.77 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 447
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.73 E-value=0.12 Score=53.63 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+|.++.+-|++||||||+.+.|+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998743
No 448
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.70 E-value=0.1 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999988864
No 449
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.66 E-value=0.097 Score=56.03 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.6
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+++.+++|.|+.||||||+.+.|+...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998755
No 450
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.63 E-value=0.079 Score=52.42 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 451
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.61 E-value=0.077 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=9.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 452
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.60 E-value=0.35 Score=65.10 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=30.6
Q ss_pred ccccccc--eecCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 491 LLHDITG--AFRPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 491 iL~~vs~--~i~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-|+.+.. -+++|+++.|.|++|+|||||+..++..
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~ 755 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4677775 7999999999999999999999988863
No 453
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.59 E-value=0.12 Score=55.39 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.56 E-value=0.12 Score=56.94 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.7
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++.|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999754
No 455
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.49 E-value=0.14 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=22.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRKT 527 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~~ 527 (1045)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999999653
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.48 E-value=0.12 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999874
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.43 E-value=0.13 Score=54.07 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
|.+++|-|+.||||||+.+.|+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6689999999999999999998754
No 458
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.43 E-value=0.12 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 459
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.36 E-value=0.13 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 460
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.34 E-value=0.11 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999974
No 461
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.29 E-value=0.074 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998643
No 462
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.29 E-value=0.068 Score=66.81 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=29.1
Q ss_pred cccceecCceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 494 DITGAFRPGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 494 ~vs~~i~~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..++.+.+|+.+.|.||||+|||||.++|++..
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 346678899999999999999999999999754
No 463
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.28 E-value=0.16 Score=54.35 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=40.2
Q ss_pred hHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCccc
Q 043954 2 EVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSN 51 (1045)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~ 51 (1045)
+.|+++++.|+ ++|++-|.+. ++.++.|++++|.+|++++.|+.++
T Consensus 194 ~~l~~l~~~g~---tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 194 NHVLELKAKGI---TFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHTTC---EEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHCCC---EEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 56888887788 5599999986 7788999999999999999999877
No 464
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.25 E-value=0.14 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++.|+||+||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999854
No 465
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.08 E-value=0.16 Score=55.43 Aligned_cols=25 Identities=32% Similarity=0.230 Sum_probs=22.0
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 466
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.07 E-value=0.13 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
+.+++|+|++||||||+.+.|+...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999998643
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.03 E-value=0.1 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.4
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+.=.++++|++|+|||||++.+.+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3446999999999999999999753
No 468
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.97 E-value=0.13 Score=55.16 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=40.5
Q ss_pred hHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHH
Q 043954 2 EVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVL 53 (1045)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~ 53 (1045)
+.|+++++.|+ ++|++-|.+. ++..+.|++++|.+|+++..|+.++..
T Consensus 194 ~~l~~l~~~g~---tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 194 RIMQQLAEEGK---TMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHHHHTTC---CEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCC---EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 56788887788 4599999975 778899999999999999999887653
No 469
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.86 E-value=0.12 Score=51.91 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 470
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.81 E-value=0.41 Score=55.73 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHHh--h---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 614 SGLSTEQRKRLTIAVELV--S---------------NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 614 ~~LSgGqrqRv~ia~aL~--~---------------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.++||||+|-.-+|.+.. . .=.++++||+ +-+|.+..+..+++++++ |--+|+++=.
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~-- 451 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE-- 451 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS--
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc--
Confidence 369999999655554332 2 1147999999 999999999999999976 7777777754
Q ss_pred HHHHHhcceEEEEe
Q 043954 677 IDVFEAFDELLLMK 690 (1045)
Q Consensus 677 ~~~~~~~d~v~~l~ 690 (1045)
.+....|.++.+-
T Consensus 452 -~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 -NISPERGTTYKLV 464 (483)
T ss_dssp -SCCCSSSEEEECC
T ss_pred -hhhhccCceEEEE
Confidence 2456678888775
No 471
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.78 E-value=0.19 Score=52.69 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=38.6
Q ss_pred hhCCCeEEEeCCCC----CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHH---------HHHhcceEEEEe
Q 043954 631 VSNPSIIFMDEPTS----GLDARAAAIVMRAVKNVVRT-GRTTVCTIHQPSID---------VFEAFDELLLMK 690 (1045)
Q Consensus 631 ~~~p~illLDEPts----gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~---------~~~~~d~v~~l~ 690 (1045)
-.+|+++++|--+. .-|.....++...|++++++ |.++++++|..... ....+|-++.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35788999986432 11445556677777777765 89999998864321 123578887774
No 472
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.69 E-value=0.13 Score=59.81 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeC-CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 619 EQRKRLTIAVELVSNPSIIFMDE-PTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 619 GqrqRv~ia~aL~~~p~illLDE-PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
.|++....+...+.+++++++.. .+.++.... ..+.+.++ +.++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 36666677777788888655444 444566554 34555554 35778888877643
No 473
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.59 E-value=0.08 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=4.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 474
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.58 E-value=0.14 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.5
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-.++|+|++|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999998863
No 475
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.43 E-value=0.16 Score=48.84 Aligned_cols=42 Identities=5% Similarity=0.007 Sum_probs=29.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 043954 633 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS 676 (1045)
Q Consensus 633 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 676 (1045)
+..+|++||.- .|++..+..+.+.|+.. ..+..+|++++.+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 44679999984 68888888888877332 22456777777653
No 476
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.41 E-value=0.13 Score=54.33 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=39.9
Q ss_pred hHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccH
Q 043954 2 EVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNV 52 (1045)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a 52 (1045)
+.|+++++.|+ ++|++-|.+. ++.++.|++++|.+|+++..|+.++.
T Consensus 180 ~~l~~~~~~g~---tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 180 EVIQKINQEGT---TILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHHHHHHHTTC---CEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHCCC---EEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 56788887788 4599999985 67889999999999999999987765
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.39 E-value=0.17 Score=57.22 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.3
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.+++|+||+|||||||.+.|+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 478
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.37 E-value=0.16 Score=53.72 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=40.0
Q ss_pred hHHHHHHHc-CCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHH
Q 043954 2 EVIRKEKEA-GIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVL 53 (1045)
Q Consensus 2 ~~~~~~~~~-~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~ 53 (1045)
+.|++++++ |++ +|++-|.+. ++..+.|++++|.+|+++..|+.++..
T Consensus 167 ~~l~~l~~~~g~t---vi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 167 EELRFVQREFDVP---ILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHTCC---EEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHhcCCE---EEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 567888754 884 499999985 678899999999999999999987653
No 479
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.36 E-value=0.19 Score=55.22 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=25.6
Q ss_pred ceecCceEEEEecCCCCCHHHHHHHHhC
Q 043954 497 GAFRPGILTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 497 ~~i~~Ge~~~i~G~sGaGKSTLl~~l~G 524 (1045)
+-+.+|..+.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6789999999999999999999998873
No 480
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.35 E-value=0.14 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998743
No 481
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.34 E-value=0.15 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 482
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=89.12 E-value=0.3 Score=55.07 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=31.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC---------CCeEEEEEEECCeeC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRKT---------GGIIQGEIRVGGYPK 542 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~~---------~~~~~G~I~~~g~~~ 542 (1045)
-+||+|.+-+|||||+|.|+|... -.|..|.+.++|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 589999999999999999999432 125679999988653
No 483
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.07 E-value=0.15 Score=51.95 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 043954 504 LTALMGVSGAGKTTLMDVLSG 524 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G 524 (1045)
.++++|++|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998886
No 484
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.82 E-value=0.17 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 485
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.82 E-value=0.16 Score=57.00 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=41.3
Q ss_pred hHHHHHHHc-CCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHH
Q 043954 2 EVIRKEKEA-GIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVL 53 (1045)
Q Consensus 2 ~~~~~~~~~-~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~ 53 (1045)
++|++|+++ |+ |+|++-|..+ ++.++.|+|++|.+|+++..|++++..
T Consensus 204 ~lL~~l~~~~g~---Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 204 ELLKDINRRLGL---TILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHHHHHHHHSCC---EEEEEESCHH-HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHHHHHHHhCCC---EEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 578888754 88 5599999985 788999999999999999999988764
No 486
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.77 E-value=0.18 Score=53.97 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=40.5
Q ss_pred hHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHH
Q 043954 2 EVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVL 53 (1045)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~ 53 (1045)
+.|+++++.|+ ++|++-|.+. ++-++.|++++|.+|+++..|+.++..
T Consensus 200 ~~l~~l~~~g~---tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 200 SVMKQLANEGM---TMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHHHHHHTTC---EEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCC---EEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 56788887788 5599999975 677899999999999999999887653
No 487
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.77 E-value=0.17 Score=54.01 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=41.2
Q ss_pred hHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHHH
Q 043954 2 EVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVLQ 54 (1045)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~~ 54 (1045)
+.|+++++.|+ ++|++-|.+. ++-.+.|++++|.+|++++.|+.++..+
T Consensus 187 ~~l~~l~~~g~---tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 187 KILKQASQEGL---TILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHHHHTTC---EEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHhCCC---EEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 56888887787 5599999985 6778899999999999999998877654
No 488
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.61 E-value=0.17 Score=51.69 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
.++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 489
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.39 E-value=0.22 Score=53.48 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=43.2
Q ss_pred hHHHHHHHcCCCCCcceEEecCCCchHHhh-hccEEEecCCceeeecCcccHHHHHhhCCCCC
Q 043954 2 EVIRKEKEAGIAPDPDVDTYMKPAPETFDL-FDDIILMAEGKIVYHGPRSNVLQYFEDCGFRC 63 (1045)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~TIHQPsseif~l-FD~vlLL~~G~~vY~Gp~~~a~~yF~~lG~~c 63 (1045)
+.|+++++.|+ ++|++-|.+. ++-.+ .|++++|.+|++++.|+.++.. -.++.||..
T Consensus 205 ~~l~~l~~~g~---tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~ 262 (267)
T 2zu0_C 205 DGVNSLRDGKR---SFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVK-QLEEQGYGW 262 (267)
T ss_dssp HHHHTTCCSSC---EEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHH-HHHTTTCTT
T ss_pred HHHHHHHhcCC---EEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHh-hhhhcchhh
Confidence 45666665677 5699999975 55555 7999999999999999988765 356666653
No 490
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.38 E-value=0.16 Score=54.56 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=39.7
Q ss_pred hHHHHHHHc-CCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccH
Q 043954 2 EVIRKEKEA-GIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNV 52 (1045)
Q Consensus 2 ~~~~~~~~~-~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a 52 (1045)
+.|+++++. |+ ++|++-|.+. ++.++.|++++|.+|++++.|+.++.
T Consensus 188 ~~l~~l~~~~~~---tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 188 RLLRQLTRQEPL---AVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HHHHHHHHHSSE---EEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCC---EEEEEEcCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 568888866 46 4599999985 78889999999999999999998765
No 491
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=88.37 E-value=0.24 Score=53.61 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCCHHHHHHHHhCCC
Q 043954 501 PGILTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 501 ~Ge~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.+-.++++|.+|+|||||+|.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34478999999999999999999964
No 492
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=88.31 E-value=0.25 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCCHHHHHHHHhCC
Q 043954 502 GILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 502 Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+-.++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998775
No 493
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.13 E-value=0.25 Score=49.84 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=37.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc---------HHHHHhcceEEEEe
Q 043954 633 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVRTGRTTVCTIHQPS---------IDVFEAFDELLLMK 690 (1045)
Q Consensus 633 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~---------~~~~~~~d~v~~l~ 690 (1045)
+++++++||.-- +|+ .+.+.|++++++|..++++.++.+ ..+.+.+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999754 543 366677777777999999888433 44556677776654
No 494
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.13 E-value=0.23 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.2
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 043954 503 ILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 503 e~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
-.+||+|++||||||+.+.|+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 495
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.10 E-value=0.23 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=22.5
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+++..+.|.||+|+|||||.+.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999998864
No 496
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.03 E-value=0.25 Score=55.69 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHH---hh--CCCeEEEeCCC
Q 043954 615 GLSTEQRKRLTIAVEL---VS--NPSIIFMDEPT 643 (1045)
Q Consensus 615 ~LSgGqrqRv~ia~aL---~~--~p~illLDEPt 643 (1045)
.+|+||+||.+++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 5899999999999999 77 89999999997
No 497
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.91 E-value=0.27 Score=52.64 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.8
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
++...+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 55668999999999999999999864
No 498
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.91 E-value=0.19 Score=56.47 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.6
Q ss_pred cCceEEEEecCCCCCHHHHHHHHhCC
Q 043954 500 RPGILTALMGVSGAGKTTLMDVLSGR 525 (1045)
Q Consensus 500 ~~Ge~~~i~G~sGaGKSTLl~~l~G~ 525 (1045)
+..-.++|+|++|+|||||++.|++.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999999864
No 499
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=87.75 E-value=0.084 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 043954 504 LTALMGVSGAGKTTLMDVLSGRK 526 (1045)
Q Consensus 504 ~~~i~G~sGaGKSTLl~~l~G~~ 526 (1045)
.++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 500
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.56 E-value=0.3 Score=52.38 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=41.1
Q ss_pred hHHHHHHHcCCCCCcceEEecCCCchHHhhhccEEEecCCceeeecCcccHHH
Q 043954 2 EVIRKEKEAGIAPDPDVDTYMKPAPETFDLFDDIILMAEGKIVYHGPRSNVLQ 54 (1045)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~TIHQPsseif~lFD~vlLL~~G~~vY~Gp~~~a~~ 54 (1045)
+.|+++++.|+ ++|++-|.+. ++-.+.|++++|.+|+++..|+.++...
T Consensus 179 ~~l~~l~~~g~---tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 179 RIVEKWKTLGK---TVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHHHTTC---EEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHHcCC---EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 56788877787 5599999986 5778899999999999999998877654
Done!