BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043955
         (835 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X7P|A Chain A, The Conserved Candida Albicans Ca3427 Gene Product Defines
           A New Family Of Proteins Exhibiting The Generic
           Periplasmic Binding Protein Structural Fold
 pdb|2X7Q|A Chain A, The Conserved Candida Albicans Ca3427 Gene Product Defines
           A New Family Of Proteins Exhibiting The Generic
           Periplasmic Binding Protein Structural Fold
          Length = 321

 Score = 34.7 bits (78), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 248 FFRELQGAGQKPD-QVCTVNAVSASGRLGNLLNGKELH-AYAIKQGFVSDLQIGNT---L 302
           FF + QG  +  D  +  V     SGRL NLLN  E+  A  + + F++D+  GN    +
Sbjct: 31  FFAQQQGYYKAHDLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHV 90

Query: 303 MDMYAKCCCV 312
           +D Y K   +
Sbjct: 91  LDTYVKSPLL 100


>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
           Streptomyces Coelicolor
 pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
           Streptomyces Coelicolor
 pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
           In Cytochrome P450 170a1
 pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
           In Cytochrome P450 170a1
          Length = 467

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 188 KSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQ 247
           +  + L V +A     MY R   M    G LY+L    +  +N  L      DL+    +
Sbjct: 178 ERAERLCVALATVFRGMYRR---MVVPLGPLYRLPLPANRRFNDALA-----DLHLLVDE 229

Query: 248 FFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLM 303
              E + +GQKPD + T   + A    G+ +  +E+H   +         I +T+M
Sbjct: 230 IIAERRASGQKPDDLLTA-LLEAKDDNGDPIGEQEIHDQVVAILTPGSETIASTIM 284


>pdb|1EJ6|A Chain A, Reovirus Core
 pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1289

 Score = 31.2 bits (69), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 144 ALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLG------MEIHAATVKSGQNLQVYV 197
           A+ LFR +Q + L T  Y F  A    E    E L       + I+  +  S +++ V+V
Sbjct: 56  AVQLFRPLQGLVLDTQLYGFPGAFDDWERFMREKLRVLKYEVLRIYPISNYSNEHVNVFV 115

Query: 198 ANALIAMY 205
           ANAL+  +
Sbjct: 116 ANALVGAF 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,680,844
Number of Sequences: 62578
Number of extensions: 954653
Number of successful extensions: 1922
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1920
Number of HSP's gapped (non-prelim): 7
length of query: 835
length of database: 14,973,337
effective HSP length: 107
effective length of query: 728
effective length of database: 8,277,491
effective search space: 6026013448
effective search space used: 6026013448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)