Query 043955
Match_columns 835
No_of_seqs 868 out of 4663
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-168 4E-173 1500.1 90.2 809 20-833 48-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-138 4E-143 1212.2 67.5 612 223-835 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.6E-89 5.6E-94 818.1 64.9 593 1-599 130-726 (857)
4 PLN03081 pentatricopeptide (PP 100.0 3.8E-70 8.2E-75 637.5 53.5 479 115-596 77-560 (697)
5 PLN03218 maturation of RBCL 1; 100.0 7.2E-68 1.6E-72 618.9 59.0 525 89-632 366-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 3.9E-67 8.4E-72 612.8 49.8 510 2-564 380-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.5E-36 2.1E-40 364.6 70.2 677 3-694 170-866 (899)
8 PF14432 DYW_deaminase: DYW fa 100.0 1.5E-42 3.3E-47 297.0 7.1 107 700-825 1-116 (116)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-35 4.1E-40 361.9 70.9 676 3-694 136-832 (899)
10 PRK11447 cellulose synthase su 100.0 4.8E-23 1E-27 253.0 64.4 637 29-696 34-743 (1157)
11 PRK11447 cellulose synthase su 100.0 5.3E-23 1.2E-27 252.6 61.9 627 4-667 40-750 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 4.4E-22 9.6E-27 232.9 59.9 634 26-691 45-737 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.4E-20 3.1E-25 220.3 56.4 641 4-681 56-760 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 5.2E-19 1.1E-23 183.0 35.4 377 296-683 116-508 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 4.8E-18 1E-22 175.9 28.9 356 326-692 115-483 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 6.3E-16 1.4E-20 178.6 42.3 248 440-693 307-570 (615)
17 PRK11788 tetratricopeptide rep 99.8 2.8E-17 6E-22 180.2 27.5 290 406-701 45-354 (389)
18 PRK15174 Vi polysaccharide exp 99.8 5.5E-16 1.2E-20 178.4 37.1 350 308-665 17-386 (656)
19 PRK11788 tetratricopeptide rep 99.8 1.3E-16 2.9E-21 174.8 29.6 294 333-664 41-355 (389)
20 PRK10049 pgaA outer membrane p 99.8 1.4E-15 3E-20 179.0 37.7 360 299-693 52-455 (765)
21 PRK10049 pgaA outer membrane p 99.8 1.8E-15 3.9E-20 178.1 38.5 364 299-693 18-421 (765)
22 KOG2002 TPR-containing nuclear 99.8 6.7E-14 1.5E-18 153.6 45.3 649 6-671 22-756 (1018)
23 KOG2002 TPR-containing nuclear 99.7 1.3E-13 2.7E-18 151.5 46.3 331 325-695 450-799 (1018)
24 PRK15174 Vi polysaccharide exp 99.7 2.6E-15 5.7E-20 172.8 33.4 325 361-694 41-381 (656)
25 TIGR00990 3a0801s09 mitochondr 99.7 8E-14 1.7E-18 161.2 42.3 247 398-693 333-596 (615)
26 PRK14574 hmsH outer membrane p 99.7 1.3E-13 2.7E-18 159.0 40.6 416 270-694 43-513 (822)
27 PRK14574 hmsH outer membrane p 99.7 2.4E-13 5.2E-18 156.8 41.2 422 204-668 43-521 (822)
28 KOG4422 Uncharacterized conser 99.7 9.2E-13 2E-17 131.6 34.8 330 23-394 116-465 (625)
29 KOG4422 Uncharacterized conser 99.7 2.1E-13 4.5E-18 136.2 29.2 270 4-304 191-476 (625)
30 KOG0495 HAT repeat protein [RN 99.6 3.6E-10 7.9E-15 119.1 52.9 510 146-709 367-893 (913)
31 KOG4318 Bicoid mRNA stability 99.6 1.4E-12 3E-17 141.5 35.3 542 44-624 11-621 (1088)
32 KOG4318 Bicoid mRNA stability 99.6 1.1E-11 2.4E-16 134.6 35.2 276 397-694 492-808 (1088)
33 KOG2076 RNA polymerase III tra 99.6 5.6E-10 1.2E-14 122.6 46.9 572 72-676 153-785 (895)
34 PF13429 TPR_15: Tetratricopep 99.5 5.4E-14 1.2E-18 145.9 9.1 211 476-691 58-274 (280)
35 KOG0495 HAT repeat protein [RN 99.5 6.7E-08 1.4E-12 102.5 50.6 491 67-672 385-892 (913)
36 KOG2076 RNA polymerase III tra 99.4 1.1E-10 2.5E-15 127.9 29.9 333 340-704 152-522 (895)
37 KOG2003 TPR repeat-containing 99.4 6.8E-11 1.5E-15 119.0 24.7 147 406-555 534-687 (840)
38 KOG1126 DNA-binding cell divis 99.4 2.6E-11 5.6E-16 129.0 21.1 164 525-693 418-585 (638)
39 KOG2003 TPR repeat-containing 99.4 2.1E-10 4.5E-15 115.5 26.2 201 475-681 503-710 (840)
40 KOG1126 DNA-binding cell divis 99.4 5E-11 1.1E-15 126.8 21.7 151 538-693 465-619 (638)
41 KOG0985 Vesicle coat protein c 99.4 7.7E-08 1.7E-12 106.3 45.9 660 5-701 373-1256(1666)
42 PRK10747 putative protoheme IX 99.4 2.3E-10 5E-15 124.4 27.1 254 373-661 129-391 (398)
43 TIGR00540 hemY_coli hemY prote 99.4 8.3E-10 1.8E-14 120.7 31.0 290 338-659 95-398 (409)
44 KOG0547 Translocase of outer m 99.4 4.9E-10 1.1E-14 114.5 26.7 208 476-690 340-562 (606)
45 KOG1155 Anaphase-promoting com 99.3 6E-09 1.3E-13 106.1 33.1 334 305-689 173-531 (559)
46 KOG1915 Cell cycle control pro 99.3 7.9E-08 1.7E-12 98.2 38.9 479 207-693 85-624 (677)
47 TIGR00540 hemY_coli hemY prote 99.3 7.5E-10 1.6E-14 121.0 26.4 282 307-625 95-396 (409)
48 PRK10747 putative protoheme IX 99.3 4.8E-09 1E-13 114.0 31.8 273 409-691 97-387 (398)
49 KOG1155 Anaphase-promoting com 99.3 1.4E-08 3E-13 103.5 31.2 351 359-738 161-520 (559)
50 TIGR02521 type_IV_pilW type IV 99.3 5.9E-10 1.3E-14 112.3 21.0 197 496-693 30-231 (234)
51 KOG1173 Anaphase-promoting com 99.2 2.3E-08 5E-13 104.7 31.9 194 494-691 309-515 (611)
52 PF13041 PPR_2: PPR repeat fam 99.2 1.8E-11 3.9E-16 88.9 6.7 50 526-575 1-50 (50)
53 PF13429 TPR_15: Tetratricopep 99.2 3.9E-11 8.4E-16 124.5 11.0 251 402-660 14-277 (280)
54 PF13041 PPR_2: PPR repeat fam 99.2 2.5E-11 5.4E-16 88.1 5.6 50 123-172 1-50 (50)
55 KOG2047 mRNA splicing factor [ 99.2 1.3E-05 2.8E-10 85.6 51.4 509 93-654 102-717 (835)
56 KOG1915 Cell cycle control pro 99.2 1E-07 2.2E-12 97.4 31.7 389 308-704 85-510 (677)
57 KOG4162 Predicted calmodulin-b 99.1 2E-07 4.3E-12 101.3 33.6 395 290-693 317-782 (799)
58 KOG1173 Anaphase-promoting com 99.1 5.9E-08 1.3E-12 101.7 28.7 496 61-641 19-532 (611)
59 PRK12370 invasion protein regu 99.1 8.7E-09 1.9E-13 117.1 25.1 210 441-693 318-534 (553)
60 KOG2047 mRNA splicing factor [ 99.1 1.6E-06 3.5E-11 92.1 37.4 546 88-693 76-686 (835)
61 COG2956 Predicted N-acetylgluc 99.1 1.1E-07 2.4E-12 92.9 26.5 311 339-718 47-371 (389)
62 COG3071 HemY Uncharacterized e 99.1 2.2E-07 4.9E-12 93.7 28.2 291 138-461 97-395 (400)
63 KOG3616 Selective LIM binding 99.1 8.6E-06 1.9E-10 87.6 41.2 529 5-691 457-1021(1636)
64 KOG1840 Kinesin light chain [C 99.1 1.7E-08 3.7E-13 109.2 21.5 237 398-691 201-476 (508)
65 COG3071 HemY Uncharacterized e 99.1 2.6E-07 5.6E-12 93.3 28.2 280 340-658 97-388 (400)
66 KOG1174 Anaphase-promoting com 99.0 1.6E-06 3.4E-11 87.5 31.8 263 397-667 233-507 (564)
67 PRK11189 lipoprotein NlpI; Pro 99.0 2.9E-08 6.4E-13 103.2 19.2 207 478-693 42-264 (296)
68 TIGR02521 type_IV_pilW type IV 99.0 7.9E-08 1.7E-12 96.7 22.0 196 428-662 32-234 (234)
69 KOG4162 Predicted calmodulin-b 99.0 1.1E-05 2.4E-10 88.2 38.4 440 190-665 318-788 (799)
70 COG2956 Predicted N-acetylgluc 99.0 3.3E-07 7.2E-12 89.6 24.3 282 239-559 48-349 (389)
71 KOG3785 Uncharacterized conser 99.0 7.1E-07 1.5E-11 88.0 26.6 444 70-566 34-497 (557)
72 KOG0985 Vesicle coat protein c 99.0 6.4E-05 1.4E-09 84.0 44.3 125 96-221 609-750 (1666)
73 PRK12370 invasion protein regu 98.9 4.8E-08 1E-12 111.1 20.9 177 510-693 317-501 (553)
74 COG3063 PilF Tfp pilus assembl 98.9 5.2E-08 1.1E-12 91.0 16.8 162 530-696 37-204 (250)
75 KOG3616 Selective LIM binding 98.9 6.4E-06 1.4E-10 88.5 33.2 460 105-653 456-930 (1636)
76 KOG0547 Translocase of outer m 98.9 9.4E-07 2E-11 91.1 25.5 213 338-553 337-562 (606)
77 KOG2376 Signal recognition par 98.9 1E-05 2.2E-10 85.7 33.4 362 308-687 91-513 (652)
78 KOG1129 TPR repeat-containing 98.9 9.8E-08 2.1E-12 93.0 16.3 225 398-693 225-457 (478)
79 KOG1127 TPR repeat-containing 98.9 4E-05 8.8E-10 85.8 38.2 647 8-676 474-1191(1238)
80 PRK11189 lipoprotein NlpI; Pro 98.8 6.6E-07 1.4E-11 93.1 21.5 204 428-674 65-280 (296)
81 KOG3785 Uncharacterized conser 98.8 1.2E-05 2.6E-10 79.6 28.1 409 201-663 63-493 (557)
82 KOG3617 WD40 and TPR repeat-co 98.8 2.9E-05 6.3E-10 84.9 32.9 241 2-274 738-1006(1416)
83 KOG1127 TPR repeat-containing 98.8 9.3E-05 2E-09 83.1 37.3 369 79-452 477-909 (1238)
84 KOG1840 Kinesin light chain [C 98.8 3.8E-06 8.3E-11 91.2 26.5 234 366-658 203-477 (508)
85 KOG2376 Signal recognition par 98.7 4.8E-05 1E-09 80.8 32.3 301 207-523 91-443 (652)
86 KOG1174 Anaphase-promoting com 98.7 8.7E-06 1.9E-10 82.3 25.2 267 426-738 231-518 (564)
87 KOG1129 TPR repeat-containing 98.7 8.2E-07 1.8E-11 86.7 17.3 228 331-630 227-461 (478)
88 PRK15359 type III secretion sy 98.7 2.9E-07 6.3E-12 84.1 12.6 122 548-676 13-137 (144)
89 COG3063 PilF Tfp pilus assembl 98.6 4.2E-06 9.2E-11 78.5 19.3 197 431-666 39-242 (250)
90 KOG1156 N-terminal acetyltrans 98.6 0.00018 3.8E-09 77.5 33.6 434 173-653 20-504 (700)
91 KOG1125 TPR repeat-containing 98.6 1.1E-06 2.4E-11 92.8 15.7 213 474-689 297-522 (579)
92 PF04733 Coatomer_E: Coatomer 98.6 3.1E-06 6.7E-11 86.7 18.0 154 504-664 109-269 (290)
93 KOG3617 WD40 and TPR repeat-co 98.6 0.0017 3.8E-08 71.5 38.4 542 92-703 725-1364(1416)
94 PLN02789 farnesyltranstransfer 98.5 7.1E-06 1.5E-10 85.2 20.2 208 430-678 40-268 (320)
95 PF12569 NARP1: NMDA receptor- 98.5 8.9E-05 1.9E-09 81.8 28.4 128 527-659 191-333 (517)
96 KOG0548 Molecular co-chaperone 98.5 3.6E-05 7.9E-10 81.0 23.7 369 304-693 10-454 (539)
97 cd05804 StaR_like StaR_like; a 98.5 8E-05 1.7E-09 80.5 28.0 292 398-693 8-335 (355)
98 PRK04841 transcriptional regul 98.5 0.0017 3.8E-08 79.7 42.3 150 306-455 351-519 (903)
99 TIGR03302 OM_YfiO outer membra 98.5 1E-05 2.2E-10 81.6 18.8 58 637-694 172-232 (235)
100 PF12569 NARP1: NMDA receptor- 98.4 8.9E-05 1.9E-09 81.8 26.2 123 565-691 196-331 (517)
101 PRK10370 formate-dependent nit 98.4 8.7E-06 1.9E-10 78.7 16.0 145 535-694 23-173 (198)
102 cd05804 StaR_like StaR_like; a 98.4 0.00031 6.8E-09 75.8 29.6 191 329-555 8-213 (355)
103 PF04733 Coatomer_E: Coatomer 98.4 9.2E-06 2E-10 83.3 16.2 159 398-594 104-267 (290)
104 KOG0548 Molecular co-chaperone 98.4 0.0004 8.8E-09 73.3 28.0 114 570-686 365-481 (539)
105 PF12854 PPR_1: PPR repeat 98.4 5.2E-07 1.1E-11 58.6 4.0 32 88-119 2-33 (34)
106 KOG1070 rRNA processing protei 98.3 5.4E-05 1.2E-09 87.7 21.9 235 385-659 1447-1699(1710)
107 KOG1914 mRNA cleavage and poly 98.3 0.0059 1.3E-07 64.7 34.8 173 443-617 347-528 (656)
108 KOG1125 TPR repeat-containing 98.3 3.6E-05 7.8E-10 81.7 19.0 213 374-590 297-525 (579)
109 PF12854 PPR_1: PPR repeat 98.3 9.6E-07 2.1E-11 57.4 4.2 32 594-625 2-33 (34)
110 PRK15359 type III secretion sy 98.3 6.4E-06 1.4E-10 75.3 10.8 98 594-693 21-120 (144)
111 PRK10370 formate-dependent nit 98.3 4.4E-05 9.5E-10 73.9 17.0 155 504-671 23-184 (198)
112 PRK04841 transcriptional regul 98.3 0.023 4.9E-07 70.0 45.0 84 507-590 663-758 (903)
113 PRK15363 pathogenicity island 98.3 1.6E-05 3.4E-10 71.4 12.3 122 594-738 28-153 (157)
114 PRK15179 Vi polysaccharide bio 98.2 3.5E-05 7.6E-10 88.2 17.9 185 463-667 28-224 (694)
115 KOG1128 Uncharacterized conser 98.2 3.2E-05 7E-10 84.1 15.3 196 492-694 393-616 (777)
116 TIGR02552 LcrH_SycD type III s 98.2 2.5E-05 5.4E-10 70.9 12.5 100 594-693 11-113 (135)
117 TIGR00756 PPR pentatricopeptid 98.2 2.5E-06 5.3E-11 56.5 4.2 34 529-562 1-34 (35)
118 COG4783 Putative Zn-dependent 98.2 0.00033 7.2E-09 73.3 21.3 117 572-691 315-434 (484)
119 KOG0624 dsRNA-activated protei 98.2 0.0026 5.7E-08 63.3 26.1 307 334-667 45-377 (504)
120 TIGR03302 OM_YfiO outer membra 98.1 7.9E-05 1.7E-09 75.1 16.5 164 497-662 33-234 (235)
121 TIGR00756 PPR pentatricopeptid 98.1 3.8E-06 8.2E-11 55.5 4.3 35 428-462 1-35 (35)
122 PRK15179 Vi polysaccharide bio 98.1 0.00015 3.3E-09 83.1 19.7 192 429-639 30-230 (694)
123 KOG1156 N-terminal acetyltrans 98.1 0.025 5.4E-07 61.6 47.5 233 35-272 19-263 (700)
124 PLN02789 farnesyltranstransfer 98.1 0.00021 4.4E-09 74.4 18.9 172 502-678 42-230 (320)
125 KOG4340 Uncharacterized conser 98.1 0.0012 2.5E-08 64.4 21.6 342 97-453 14-372 (459)
126 KOG1070 rRNA processing protei 98.0 0.00021 4.5E-09 83.1 18.7 197 496-696 1457-1665(1710)
127 COG5010 TadD Flp pilus assembl 98.0 0.00034 7.3E-09 67.5 17.2 133 559-693 62-196 (257)
128 KOG1128 Uncharacterized conser 98.0 0.00012 2.5E-09 79.9 15.2 210 398-625 400-613 (777)
129 COG4783 Putative Zn-dependent 98.0 0.00079 1.7E-08 70.6 20.7 147 527-695 305-455 (484)
130 COG5010 TadD Flp pilus assembl 98.0 0.00022 4.9E-09 68.7 15.1 176 501-682 70-252 (257)
131 KOG0624 dsRNA-activated protei 98.0 0.0052 1.1E-07 61.3 24.6 292 376-693 52-369 (504)
132 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 52.7 4.4 34 528-561 1-34 (34)
133 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0002 4.4E-09 75.9 14.8 127 499-630 171-299 (395)
134 TIGR02552 LcrH_SycD type III s 97.9 0.00018 3.8E-09 65.3 12.5 113 550-667 5-121 (135)
135 KOG4340 Uncharacterized conser 97.9 0.0026 5.7E-08 62.1 20.5 302 365-689 13-334 (459)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00027 5.9E-09 74.9 15.3 122 566-692 172-295 (395)
137 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 3.9E-10 51.8 4.2 34 427-460 1-34 (34)
138 KOG0553 TPR repeat-containing 97.9 0.00011 2.3E-09 72.2 10.6 95 573-670 91-188 (304)
139 PRK14720 transcript cleavage f 97.8 0.0027 5.8E-08 73.8 21.6 40 637-676 229-268 (906)
140 PF01535 PPR: PPR repeat; Int 97.7 3.3E-05 7.1E-10 49.3 3.4 31 529-559 1-31 (31)
141 PF01535 PPR: PPR repeat; Int 97.7 4E-05 8.7E-10 48.9 3.4 31 428-458 1-31 (31)
142 KOG2053 Mitochondrial inherita 97.6 0.21 4.5E-06 56.8 39.5 213 6-223 23-254 (932)
143 PLN03088 SGT1, suppressor of 97.6 0.00045 9.7E-09 73.7 11.8 102 570-674 9-113 (356)
144 PF09976 TPR_21: Tetratricopep 97.6 0.0012 2.5E-08 60.6 13.0 113 576-689 24-142 (145)
145 KOG2053 Mitochondrial inherita 97.6 0.23 5E-06 56.5 41.6 218 34-256 20-256 (932)
146 KOG3060 Uncharacterized conser 97.6 0.0024 5.3E-08 61.1 14.5 172 511-689 26-212 (289)
147 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.00083 1.8E-08 59.1 10.9 98 570-667 9-112 (119)
148 cd00189 TPR Tetratricopeptide 97.5 0.00068 1.5E-08 56.4 9.5 91 602-692 3-95 (100)
149 PLN03088 SGT1, suppressor of 97.5 0.00074 1.6E-08 72.0 11.3 103 534-641 8-113 (356)
150 PF13431 TPR_17: Tetratricopep 97.5 5.4E-05 1.2E-09 49.1 1.6 32 654-685 2-33 (34)
151 PF12895 Apc3: Anaphase-promot 97.5 9.4E-05 2E-09 60.5 3.3 77 612-689 2-82 (84)
152 PF09976 TPR_21: Tetratricopep 97.5 0.0044 9.5E-08 56.8 14.7 123 531-657 15-144 (145)
153 PRK10153 DNA-binding transcrip 97.5 0.0034 7.4E-08 69.9 16.4 39 524-564 333-376 (517)
154 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0013 2.8E-08 57.9 10.8 95 600-694 3-105 (119)
155 KOG1914 mRNA cleavage and poly 97.4 0.25 5.5E-06 52.9 31.5 127 22-153 19-165 (656)
156 CHL00033 ycf3 photosystem I as 97.4 0.0047 1E-07 58.3 14.7 109 528-664 35-153 (168)
157 PRK02603 photosystem I assembl 97.4 0.0027 5.9E-08 60.1 13.0 130 527-680 34-166 (172)
158 KOG0550 Molecular chaperone (D 97.4 0.0011 2.3E-08 67.8 10.1 88 606-693 256-349 (486)
159 PF13414 TPR_11: TPR repeat; P 97.3 0.00037 8.1E-09 54.4 5.1 62 630-691 2-64 (69)
160 PF13432 TPR_16: Tetratricopep 97.3 0.00059 1.3E-08 52.5 6.1 50 641-690 7-56 (65)
161 PRK15331 chaperone protein Sic 97.3 0.002 4.3E-08 58.3 10.0 101 593-693 30-133 (165)
162 COG4235 Cytochrome c biogenesi 97.3 0.00094 2E-08 66.3 8.0 108 594-701 150-263 (287)
163 CHL00033 ycf3 photosystem I as 97.2 0.0019 4.1E-08 61.0 9.8 91 599-689 35-137 (168)
164 KOG3081 Vesicle coat complex C 97.2 0.034 7.3E-07 54.0 17.8 154 504-664 115-275 (299)
165 KOG0553 TPR repeat-containing 97.2 0.0026 5.7E-08 62.7 10.4 97 537-638 90-189 (304)
166 cd00189 TPR Tetratricopeptide 97.2 0.003 6.5E-08 52.3 9.8 89 531-624 3-93 (100)
167 PF04840 Vps16_C: Vps16, C-ter 97.2 0.29 6.3E-06 51.0 25.9 107 398-520 179-285 (319)
168 PRK02603 photosystem I assembl 97.2 0.003 6.5E-08 59.9 10.2 82 599-680 35-121 (172)
169 KOG3060 Uncharacterized conser 97.1 0.026 5.7E-07 54.3 15.8 180 493-678 47-235 (289)
170 PF13432 TPR_16: Tetratricopep 97.1 0.00084 1.8E-08 51.7 5.0 61 605-665 3-65 (65)
171 COG4700 Uncharacterized protei 97.1 0.0088 1.9E-07 54.5 11.9 105 589-693 79-188 (251)
172 PRK10153 DNA-binding transcrip 97.1 0.0053 1.2E-07 68.4 13.1 131 559-693 333-481 (517)
173 PRK14720 transcript cleavage f 97.1 0.11 2.4E-06 60.8 23.5 149 362-539 116-268 (906)
174 PF12688 TPR_5: Tetratrico pep 97.1 0.011 2.4E-07 51.4 11.7 92 533-624 6-100 (120)
175 PF14559 TPR_19: Tetratricopep 97.0 0.0011 2.4E-08 51.6 4.9 49 643-691 3-51 (68)
176 PRK15363 pathogenicity island 97.0 0.02 4.4E-07 51.7 13.3 95 525-624 32-128 (157)
177 PF14559 TPR_19: Tetratricopep 97.0 0.00048 1E-08 53.6 2.7 57 575-634 3-61 (68)
178 PF13414 TPR_11: TPR repeat; P 96.9 0.002 4.4E-08 50.2 5.8 64 599-662 3-69 (69)
179 PF04840 Vps16_C: Vps16, C-ter 96.9 0.68 1.5E-05 48.3 27.8 121 504-644 184-304 (319)
180 PF13371 TPR_9: Tetratricopept 96.8 0.0024 5.3E-08 50.4 5.5 55 639-693 3-57 (73)
181 KOG3081 Vesicle coat complex C 96.8 0.15 3.3E-06 49.7 18.1 139 536-684 116-260 (299)
182 PF05843 Suf: Suppressor of fo 96.8 0.019 4.2E-07 59.0 13.3 133 530-665 3-141 (280)
183 COG3898 Uncharacterized membra 96.7 0.91 2E-05 46.8 26.0 234 439-687 132-385 (531)
184 PF14938 SNAP: Soluble NSF att 96.7 0.078 1.7E-06 54.8 17.0 104 573-676 124-243 (282)
185 PF14938 SNAP: Soluble NSF att 96.7 0.13 2.8E-06 53.1 18.6 148 503-662 100-268 (282)
186 PF10037 MRP-S27: Mitochondria 96.7 0.016 3.5E-07 62.0 11.7 117 92-208 65-186 (429)
187 PF12895 Apc3: Anaphase-promot 96.7 0.0045 9.8E-08 50.5 6.0 80 541-624 2-83 (84)
188 PF10037 MRP-S27: Mitochondria 96.6 0.017 3.7E-07 61.8 11.6 122 52-173 60-186 (429)
189 PF06239 ECSIT: Evolutionarily 96.6 0.034 7.4E-07 52.7 11.6 108 476-598 66-174 (228)
190 PF05843 Suf: Suppressor of fo 96.6 0.03 6.6E-07 57.6 12.7 84 480-566 54-143 (280)
191 PF13428 TPR_14: Tetratricopep 96.5 0.0027 5.9E-08 44.2 3.3 42 632-673 2-43 (44)
192 PF08579 RPM2: Mitochondrial r 96.5 0.018 4E-07 48.1 8.3 79 27-105 29-116 (120)
193 PF13371 TPR_9: Tetratricopept 96.4 0.0066 1.4E-07 47.9 5.4 64 607-670 3-68 (73)
194 PF12688 TPR_5: Tetratrico pep 96.3 0.028 6.1E-07 48.9 9.1 84 605-688 7-98 (120)
195 PF13281 DUF4071: Domain of un 96.3 0.29 6.2E-06 51.5 17.9 158 504-664 148-338 (374)
196 KOG1538 Uncharacterized conser 96.3 0.35 7.7E-06 52.7 18.6 99 502-632 708-807 (1081)
197 KOG1538 Uncharacterized conser 96.3 0.26 5.6E-06 53.7 17.4 69 141-221 616-684 (1081)
198 PF06239 ECSIT: Evolutionarily 96.2 0.043 9.2E-07 52.1 10.3 98 517-615 34-154 (228)
199 PRK11906 transcriptional regul 96.2 0.09 2E-06 56.0 13.7 156 529-688 252-430 (458)
200 PRK10803 tol-pal system protei 96.2 0.1 2.2E-06 52.7 13.6 94 539-665 154-251 (263)
201 KOG2796 Uncharacterized conser 96.1 0.25 5.4E-06 47.9 14.9 137 431-569 181-325 (366)
202 PF08579 RPM2: Mitochondrial r 96.1 0.056 1.2E-06 45.3 9.2 79 129-207 29-116 (120)
203 KOG0550 Molecular chaperone (D 96.0 0.84 1.8E-05 47.5 19.0 143 538-685 259-434 (486)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.019 4.1E-07 60.9 7.7 61 631-691 75-138 (453)
205 PRK10803 tol-pal system protei 96.0 0.074 1.6E-06 53.7 11.7 94 600-693 144-245 (263)
206 COG0457 NrfG FOG: TPR repeat [ 96.0 1.8 4E-05 42.4 24.3 192 497-692 59-263 (291)
207 KOG2041 WD40 repeat protein [G 95.9 3.9 8.4E-05 45.5 26.7 282 303-638 767-1064(1189)
208 PRK10866 outer membrane biogen 95.9 0.63 1.4E-05 46.6 17.6 53 641-693 185-240 (243)
209 PF12921 ATP13: Mitochondrial 95.8 0.077 1.7E-06 46.7 9.5 85 562-646 1-103 (126)
210 KOG2280 Vacuolar assembly/sort 95.8 4.7 0.0001 45.5 28.1 326 266-624 442-795 (829)
211 KOG4555 TPR repeat-containing 95.7 0.056 1.2E-06 46.3 7.8 89 607-695 51-145 (175)
212 COG4700 Uncharacterized protei 95.7 0.54 1.2E-05 43.3 14.3 126 559-689 85-217 (251)
213 KOG2041 WD40 repeat protein [G 95.7 3.2 6.8E-05 46.2 22.4 31 90-120 689-719 (1189)
214 COG3898 Uncharacterized membra 95.6 3.3 7.1E-05 43.0 27.2 215 407-630 165-397 (531)
215 PF03704 BTAD: Bacterial trans 95.6 0.13 2.7E-06 47.2 10.6 106 573-692 16-123 (146)
216 KOG0543 FKBP-type peptidyl-pro 95.5 0.13 2.8E-06 53.4 11.0 80 633-738 259-338 (397)
217 PRK11906 transcriptional regul 95.5 0.17 3.6E-06 54.1 11.9 112 579-690 274-397 (458)
218 KOG2280 Vacuolar assembly/sort 95.4 6.4 0.00014 44.5 25.3 335 153-519 425-792 (829)
219 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.16 3.4E-06 54.1 11.2 63 527-591 74-140 (453)
220 COG4235 Cytochrome c biogenesi 95.3 0.17 3.6E-06 50.7 10.7 107 527-638 155-267 (287)
221 KOG2796 Uncharacterized conser 95.3 1.4 3E-05 43.0 16.2 182 482-668 125-323 (366)
222 COG0457 NrfG FOG: TPR repeat [ 95.2 3.4 7.5E-05 40.4 21.4 162 497-663 95-268 (291)
223 PF13424 TPR_12: Tetratricopep 95.2 0.034 7.3E-07 44.5 4.6 59 601-659 7-74 (78)
224 KOG2114 Vacuolar assembly/sort 94.8 9.6 0.00021 43.7 25.5 21 204-224 499-519 (933)
225 PRK10866 outer membrane biogen 94.7 5.2 0.00011 40.1 21.4 47 574-620 186-233 (243)
226 PF04053 Coatomer_WDAD: Coatom 94.7 0.15 3.3E-06 55.7 9.5 131 539-695 272-403 (443)
227 PF07079 DUF1347: Protein of u 94.5 8 0.00017 41.2 34.9 71 618-689 443-519 (549)
228 KOG1920 IkappaB kinase complex 94.3 2 4.3E-05 50.9 17.4 157 410-625 894-1052(1265)
229 PF07079 DUF1347: Protein of u 94.2 9.3 0.0002 40.7 38.6 112 96-208 49-180 (549)
230 PF12921 ATP13: Mitochondrial 94.1 0.43 9.3E-06 42.0 9.3 96 497-608 2-97 (126)
231 PF07719 TPR_2: Tetratricopept 94.1 0.11 2.5E-06 33.3 4.4 33 632-664 2-34 (34)
232 PF00515 TPR_1: Tetratricopept 94.0 0.09 1.9E-06 33.9 3.7 33 632-664 2-34 (34)
233 smart00299 CLH Clathrin heavy 93.9 1.4 3E-05 39.8 12.9 125 466-642 11-136 (140)
234 PF13525 YfiO: Outer membrane 93.9 3.4 7.3E-05 40.2 16.3 140 531-693 8-169 (203)
235 PF13424 TPR_12: Tetratricopep 93.9 0.15 3.2E-06 40.7 5.7 26 599-624 46-71 (78)
236 PF09205 DUF1955: Domain of un 93.9 1.8 4E-05 37.5 12.1 140 539-697 13-152 (161)
237 PF03704 BTAD: Bacterial trans 93.9 0.39 8.4E-06 43.9 9.2 69 531-601 65-138 (146)
238 PF09613 HrpB1_HrpK: Bacterial 93.8 1.2 2.7E-05 40.4 11.8 93 568-663 15-109 (160)
239 PF04097 Nic96: Nup93/Nic96; 93.7 13 0.00028 43.0 22.9 103 505-629 422-535 (613)
240 KOG2114 Vacuolar assembly/sort 93.6 17 0.00037 41.9 27.5 117 97-222 338-458 (933)
241 PF04184 ST7: ST7 protein; In 93.6 3.8 8.2E-05 44.2 16.5 100 569-668 265-383 (539)
242 PF13525 YfiO: Outer membrane 93.3 3.2 6.9E-05 40.4 14.9 164 503-687 11-200 (203)
243 KOG3941 Intermediate in Toll s 93.3 0.69 1.5E-05 45.5 9.7 101 515-616 52-175 (406)
244 KOG1130 Predicted G-alpha GTPa 93.2 0.37 8E-06 49.8 8.2 127 565-691 197-341 (639)
245 PF10300 DUF3808: Protein of u 93.2 4.5 9.8E-05 45.0 17.6 187 530-737 190-401 (468)
246 smart00299 CLH Clathrin heavy 93.1 4.1 8.8E-05 36.8 14.5 75 376-453 21-95 (140)
247 KOG4555 TPR repeat-containing 92.8 0.54 1.2E-05 40.5 7.3 87 572-661 52-145 (175)
248 PF08631 SPO22: Meiosis protei 92.7 13 0.00029 38.1 19.9 19 639-657 254-272 (278)
249 KOG0543 FKBP-type peptidyl-pro 92.6 0.65 1.4E-05 48.5 9.1 137 535-693 215-354 (397)
250 PF13512 TPR_18: Tetratricopep 92.6 1.2 2.6E-05 39.7 9.6 18 647-664 115-132 (142)
251 PRK15331 chaperone protein Sic 92.5 1.3 2.7E-05 40.5 9.8 90 568-663 42-136 (165)
252 COG3118 Thioredoxin domain-con 92.4 2.6 5.6E-05 42.3 12.5 116 572-691 143-262 (304)
253 KOG1130 Predicted G-alpha GTPa 92.3 0.75 1.6E-05 47.6 9.0 254 336-589 26-341 (639)
254 COG1729 Uncharacterized protei 92.2 1.1 2.4E-05 44.4 9.8 93 530-625 144-241 (262)
255 KOG1258 mRNA processing protei 92.0 23 0.00051 39.3 32.4 184 496-682 296-492 (577)
256 PF13512 TPR_18: Tetratricopep 91.8 1.4 2.9E-05 39.4 9.0 63 605-667 16-83 (142)
257 COG4105 ComL DNA uptake lipopr 91.6 15 0.00033 36.3 17.4 69 529-599 35-107 (254)
258 KOG4234 TPR repeat-containing 91.4 0.84 1.8E-05 42.6 7.4 88 606-693 102-196 (271)
259 COG1729 Uncharacterized protei 91.0 1.5 3.2E-05 43.5 9.3 102 565-667 144-251 (262)
260 KOG3941 Intermediate in Toll s 91.0 1.4 3E-05 43.5 8.8 97 11-107 53-172 (406)
261 PF04097 Nic96: Nup93/Nic96; 91.0 4 8.6E-05 47.2 14.3 85 435-524 266-354 (613)
262 PF04184 ST7: ST7 protein; In 90.6 5.8 0.00013 42.8 13.6 140 540-694 180-324 (539)
263 PRK12798 chemotaxis protein; R 90.4 27 0.00059 37.2 21.3 166 510-678 125-303 (421)
264 PF00637 Clathrin: Region in C 90.3 0.16 3.5E-06 46.3 1.9 85 165-252 12-96 (143)
265 PF13170 DUF4003: Protein of u 89.6 7.2 0.00016 40.3 13.3 135 444-609 79-227 (297)
266 PF04053 Coatomer_WDAD: Coatom 89.4 8.2 0.00018 42.4 14.4 80 201-291 324-403 (443)
267 PF13428 TPR_14: Tetratricopep 88.7 1.2 2.5E-05 30.8 4.8 34 529-564 2-35 (44)
268 PF02259 FAT: FAT domain; Int 88.7 36 0.00079 36.2 19.1 33 644-676 271-303 (352)
269 PF10300 DUF3808: Protein of u 88.5 3.2 7E-05 46.2 10.7 141 549-693 178-333 (468)
270 KOG1941 Acetylcholine receptor 88.5 29 0.00062 36.0 16.0 18 668-685 334-351 (518)
271 KOG4648 Uncharacterized conser 88.4 1.1 2.5E-05 45.2 6.2 108 569-683 103-213 (536)
272 PF13181 TPR_8: Tetratricopept 88.2 0.72 1.6E-05 29.5 3.3 31 633-663 3-33 (34)
273 COG4785 NlpI Lipoprotein NlpI, 88.1 17 0.00036 34.8 13.1 180 507-693 75-265 (297)
274 KOG1585 Protein required for f 88.0 24 0.00051 34.6 14.3 155 499-676 93-263 (308)
275 PF00515 TPR_1: Tetratricopept 87.2 1.2 2.7E-05 28.4 4.0 32 529-562 2-33 (34)
276 COG3629 DnrI DNA-binding trans 87.2 2.9 6.2E-05 42.2 8.4 72 498-569 154-233 (280)
277 COG3118 Thioredoxin domain-con 86.7 39 0.00083 34.3 15.7 54 372-425 144-197 (304)
278 COG5107 RNA14 Pre-mRNA 3'-end 86.6 49 0.0011 35.4 30.1 439 193-646 40-550 (660)
279 PF07035 Mic1: Colon cancer-as 86.4 28 0.0006 32.3 14.6 94 551-654 48-143 (167)
280 KOG4648 Uncharacterized conser 86.3 3 6.5E-05 42.3 7.8 97 535-636 104-203 (536)
281 PF13176 TPR_7: Tetratricopept 86.3 1.5 3.2E-05 28.7 4.0 26 530-555 1-26 (36)
282 KOG1941 Acetylcholine receptor 86.3 7.1 0.00015 40.2 10.4 47 437-483 16-64 (518)
283 KOG4279 Serine/threonine prote 86.2 9.5 0.00021 43.0 12.1 180 431-664 205-399 (1226)
284 KOG2610 Uncharacterized conser 86.2 4.5 9.7E-05 41.1 8.9 159 540-701 115-283 (491)
285 TIGR02561 HrpB1_HrpK type III 86.2 10 0.00022 34.1 10.1 86 575-663 22-109 (153)
286 PF07035 Mic1: Colon cancer-as 85.6 28 0.00061 32.3 13.2 135 145-291 14-150 (167)
287 KOG1920 IkappaB kinase complex 85.5 62 0.0013 39.2 18.7 142 503-655 914-1063(1265)
288 PF13170 DUF4003: Protein of u 85.0 51 0.0011 34.1 17.0 55 544-598 78-138 (297)
289 KOG2066 Vacuolar assembly/sort 84.6 84 0.0018 36.3 25.4 94 545-650 611-709 (846)
290 PRK09687 putative lyase; Provi 84.5 52 0.0011 33.8 23.4 75 494-574 203-278 (280)
291 PF10602 RPN7: 26S proteasome 84.3 7.4 0.00016 36.7 9.3 58 499-556 38-101 (177)
292 PRK10941 hypothetical protein; 84.3 2.4 5.2E-05 42.9 6.3 60 634-693 184-243 (269)
293 COG4649 Uncharacterized protei 83.8 14 0.00031 33.9 10.1 116 308-423 70-194 (221)
294 PF13176 TPR_7: Tetratricopept 83.7 1.6 3.5E-05 28.5 3.3 25 634-658 2-26 (36)
295 COG4785 NlpI Lipoprotein NlpI, 83.6 3 6.6E-05 39.6 6.1 88 575-665 77-167 (297)
296 PRK09687 putative lyase; Provi 83.4 58 0.0012 33.4 25.3 231 398-641 39-277 (280)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 82.9 8.5 0.00018 31.5 7.5 69 617-697 28-96 (103)
298 COG4105 ComL DNA uptake lipopr 82.7 54 0.0012 32.6 19.8 178 497-694 35-233 (254)
299 COG5107 RNA14 Pre-mRNA 3'-end 82.1 78 0.0017 34.0 30.7 144 326-472 396-545 (660)
300 PF13431 TPR_17: Tetratricopep 81.2 2.3 5E-05 27.4 3.2 31 386-416 3-33 (34)
301 PF00637 Clathrin: Region in C 81.2 1.2 2.6E-05 40.5 2.6 55 467-521 12-66 (143)
302 COG3947 Response regulator con 81.1 65 0.0014 32.5 14.8 95 598-692 226-340 (361)
303 PF07719 TPR_2: Tetratricopept 81.1 3 6.5E-05 26.4 3.9 31 530-562 3-33 (34)
304 PF09613 HrpB1_HrpK: Bacterial 81.1 7.3 0.00016 35.6 7.4 51 643-693 22-72 (160)
305 KOG2610 Uncharacterized conser 81.0 37 0.0008 34.8 12.8 176 509-689 115-310 (491)
306 PF08631 SPO22: Meiosis protei 80.9 71 0.0015 32.8 21.3 25 530-555 249-273 (278)
307 COG3629 DnrI DNA-binding trans 80.4 7.9 0.00017 39.1 8.2 61 633-693 155-215 (280)
308 KOG0292 Vesicle coat complex C 80.2 2.5 5.3E-05 48.3 5.0 122 541-697 606-727 (1202)
309 PF04910 Tcf25: Transcriptiona 79.8 68 0.0015 34.3 15.6 90 570-663 110-225 (360)
310 PF14853 Fis1_TPR_C: Fis1 C-te 79.7 2.5 5.4E-05 30.5 3.2 32 637-668 7-38 (53)
311 PF02284 COX5A: Cytochrome c o 79.6 11 0.00023 31.3 7.1 67 618-696 32-98 (108)
312 PF04910 Tcf25: Transcriptiona 78.8 22 0.00049 37.9 11.6 107 597-703 37-181 (360)
313 TIGR02561 HrpB1_HrpK type III 78.7 10 0.00023 34.0 7.4 52 644-695 23-74 (153)
314 KOG4570 Uncharacterized conser 78.7 14 0.00031 37.3 9.1 105 290-395 58-168 (418)
315 TIGR02508 type_III_yscG type I 78.0 26 0.00057 29.0 8.7 61 505-568 47-107 (115)
316 PF06552 TOM20_plant: Plant sp 77.3 7.3 0.00016 36.2 6.3 75 594-696 63-138 (186)
317 PF13281 DUF4071: Domain of un 76.8 1.1E+02 0.0024 32.7 20.7 86 544-631 242-338 (374)
318 KOG1308 Hsp70-interacting prot 76.7 2.1 4.6E-05 43.6 2.9 87 612-698 127-215 (377)
319 PF15161 Neuropep_like: Neurop 76.4 0.79 1.7E-05 32.3 -0.1 17 790-807 11-27 (65)
320 KOG0403 Neoplastic transformat 75.6 1.2E+02 0.0026 32.6 18.5 59 400-458 513-574 (645)
321 PRK11509 hydrogenase-1 operon 75.3 3.7 8.1E-05 36.2 3.8 68 708-793 34-102 (132)
322 PF10602 RPN7: 26S proteasome 75.3 27 0.00059 32.9 9.9 95 529-625 37-139 (177)
323 KOG0276 Vesicle coat complex C 74.5 38 0.00082 37.6 11.6 147 509-689 598-745 (794)
324 TIGR02508 type_III_yscG type I 74.3 27 0.00059 28.9 8.0 62 401-465 44-105 (115)
325 PF02259 FAT: FAT domain; Int 74.2 65 0.0014 34.2 14.1 64 630-693 145-212 (352)
326 smart00028 TPR Tetratricopepti 73.9 5.2 0.00011 24.1 3.5 30 634-663 4-33 (34)
327 PF13374 TPR_10: Tetratricopep 73.9 6.6 0.00014 26.2 4.1 28 529-556 3-30 (42)
328 PF13181 TPR_8: Tetratricopept 73.9 4.7 0.0001 25.6 3.1 27 530-556 3-29 (34)
329 PHA02875 ankyrin repeat protei 73.8 1.4E+02 0.0031 32.6 17.3 173 34-223 10-193 (413)
330 PF07721 TPR_4: Tetratricopept 73.0 4.1 9E-05 24.2 2.5 24 666-689 2-25 (26)
331 KOG4570 Uncharacterized conser 72.4 32 0.00069 35.0 9.7 103 87-190 58-165 (418)
332 PRK15180 Vi polysaccharide bio 71.6 15 0.00032 39.4 7.5 122 541-667 302-428 (831)
333 PHA02875 ankyrin repeat protei 71.6 1.6E+02 0.0035 32.2 17.8 147 203-362 73-230 (413)
334 PF13934 ELYS: Nuclear pore co 71.3 69 0.0015 31.6 12.1 107 530-645 78-186 (226)
335 COG1747 Uncharacterized N-term 70.2 1.8E+02 0.0038 32.1 15.3 160 326-491 65-234 (711)
336 KOG1586 Protein required for f 69.1 1E+02 0.0022 30.2 11.8 147 507-665 24-188 (288)
337 PF07721 TPR_4: Tetratricopept 68.8 8.4 0.00018 22.9 3.2 22 602-623 4-25 (26)
338 PF13762 MNE1: Mitochondrial s 68.8 48 0.001 29.9 9.2 78 96-173 42-128 (145)
339 PF11207 DUF2989: Protein of u 68.6 18 0.0004 34.4 6.9 68 617-684 124-197 (203)
340 PRK09169 hypothetical protein; 68.2 4.1E+02 0.0088 35.5 43.0 230 461-690 497-772 (2316)
341 PF09205 DUF1955: Domain of un 67.2 90 0.0019 27.6 12.6 62 431-493 90-151 (161)
342 PF06552 TOM20_plant: Plant sp 67.2 15 0.00033 34.2 5.9 34 647-680 51-84 (186)
343 COG2976 Uncharacterized protei 67.1 1.2E+02 0.0026 28.9 13.4 114 546-664 70-192 (207)
344 COG4455 ImpE Protein of avirul 66.7 97 0.0021 30.0 11.0 126 530-667 3-141 (273)
345 cd00923 Cyt_c_Oxidase_Va Cytoc 64.9 40 0.00086 27.8 7.1 60 546-607 25-84 (103)
346 PF09477 Type_III_YscG: Bacter 64.8 77 0.0017 26.7 8.8 77 379-457 23-99 (116)
347 PF13374 TPR_10: Tetratricopep 64.4 12 0.00026 24.8 3.8 28 428-455 3-30 (42)
348 KOG0376 Serine-threonine phosp 64.0 18 0.00039 39.0 6.6 87 606-692 11-99 (476)
349 KOG1550 Extracellular protein 63.9 1.5E+02 0.0033 33.9 14.6 152 540-698 261-430 (552)
350 PF13174 TPR_6: Tetratricopept 62.5 14 0.00031 22.9 3.7 25 639-663 8-32 (33)
351 PF09670 Cas_Cas02710: CRISPR- 61.2 1.2E+02 0.0025 32.9 12.3 128 531-660 135-270 (379)
352 COG4649 Uncharacterized protei 61.1 1.4E+02 0.0031 27.8 15.0 121 538-659 68-195 (221)
353 PF02284 COX5A: Cytochrome c o 60.9 57 0.0012 27.3 7.4 60 546-607 28-87 (108)
354 PRK13342 recombination factor 60.8 2.6E+02 0.0056 30.7 15.5 119 258-394 173-302 (413)
355 COG2976 Uncharacterized protei 60.7 1.6E+02 0.0034 28.1 12.7 86 372-457 99-189 (207)
356 KOG0551 Hsp90 co-chaperone CNS 60.5 38 0.00082 34.8 7.7 104 586-689 65-177 (390)
357 PF11207 DUF2989: Protein of u 58.7 55 0.0012 31.3 8.1 74 545-619 123-198 (203)
358 PF14427 Pput2613-deam: Pput_2 58.6 20 0.00043 29.9 4.4 59 761-819 44-102 (118)
359 PF06957 COPI_C: Coatomer (COP 58.5 54 0.0012 35.5 9.0 108 539-664 215-333 (422)
360 COG4976 Predicted methyltransf 58.4 15 0.00032 35.5 4.2 59 608-666 4-64 (287)
361 PF11768 DUF3312: Protein of u 58.3 80 0.0017 35.1 10.3 24 501-524 412-435 (545)
362 PRK13800 putative oxidoreducta 57.7 4.4E+02 0.0096 32.4 24.1 255 316-591 624-880 (897)
363 KOG4642 Chaperone-dependent E3 57.7 20 0.00043 35.0 5.0 79 614-692 25-105 (284)
364 PF13934 ELYS: Nuclear pore co 57.1 91 0.002 30.8 9.9 113 511-632 92-205 (226)
365 PRK10941 hypothetical protein; 55.2 57 0.0012 33.1 8.2 65 605-669 187-253 (269)
366 smart00028 TPR Tetratricopepti 55.1 22 0.00047 21.1 3.6 27 530-556 3-29 (34)
367 PRK13800 putative oxidoreducta 54.5 5E+02 0.011 32.0 25.5 81 494-580 725-806 (897)
368 PF07720 TPR_3: Tetratricopept 54.5 27 0.00058 22.9 3.8 32 633-664 3-36 (36)
369 PF13929 mRNA_stabil: mRNA sta 54.0 1.6E+02 0.0035 29.9 10.9 121 26-149 134-262 (292)
370 KOG0890 Protein kinase of the 53.7 7.1E+02 0.015 33.5 34.0 337 299-674 1423-1798(2382)
371 COG2909 MalT ATP-dependent tra 53.5 4.6E+02 0.0099 31.3 19.0 187 508-695 426-648 (894)
372 KOG4234 TPR repeat-containing 53.4 95 0.0021 29.6 8.5 58 605-664 140-201 (271)
373 PF10579 Rapsyn_N: Rapsyn N-te 53.3 27 0.00058 27.6 4.2 47 575-621 18-65 (80)
374 PF14561 TPR_20: Tetratricopep 52.9 20 0.00044 29.3 3.8 40 652-691 9-48 (90)
375 PRK15180 Vi polysaccharide bio 52.7 1.6E+02 0.0034 32.0 10.9 138 576-718 302-442 (831)
376 PF09477 Type_III_YscG: Bacter 52.0 1.5E+02 0.0032 25.1 8.9 60 504-566 47-106 (116)
377 KOG4642 Chaperone-dependent E3 51.9 1.3E+02 0.0028 29.6 9.3 75 511-587 24-102 (284)
378 PF13762 MNE1: Mitochondrial s 51.2 1.3E+02 0.0029 27.2 8.8 79 531-612 42-128 (145)
379 PRK11619 lytic murein transgly 50.9 4.7E+02 0.01 30.6 31.4 262 398-673 101-384 (644)
380 cd02965 HyaE HyaE family; HyaE 50.6 25 0.00054 30.1 4.1 72 703-793 22-94 (111)
381 TIGR02414 pepN_proteo aminopep 50.0 2.7E+02 0.0058 33.9 13.9 119 567-686 708-835 (863)
382 COG4455 ImpE Protein of avirul 49.6 48 0.001 31.9 6.1 62 605-666 7-70 (273)
383 PF13971 Mei4: Meiosis-specifi 49.5 7.8 0.00017 40.6 1.1 31 758-788 10-41 (375)
384 PRK11619 lytic murein transgly 49.4 4.9E+02 0.011 30.5 36.9 80 606-685 414-496 (644)
385 PRK14015 pepN aminopeptidase N 49.0 3E+02 0.0064 33.6 14.1 121 566-687 717-846 (875)
386 PF13174 TPR_6: Tetratricopept 48.9 23 0.00049 21.9 2.9 23 534-556 6-28 (33)
387 KOG0890 Protein kinase of the 48.6 8.4E+02 0.018 32.9 29.6 304 371-693 1392-1730(2382)
388 PF15469 Sec5: Exocyst complex 48.4 1.5E+02 0.0033 28.0 9.7 88 568-671 91-179 (182)
389 KOG1585 Protein required for f 48.3 2.9E+02 0.0063 27.5 15.8 144 530-688 93-250 (308)
390 KOG3824 Huntingtin interacting 48.3 19 0.00042 36.2 3.5 58 611-668 128-187 (472)
391 PF10366 Vps39_1: Vacuolar sor 47.5 86 0.0019 26.7 6.9 27 530-556 41-67 (108)
392 KOG0276 Vesicle coat complex C 47.3 1.4E+02 0.003 33.6 9.8 45 105-152 649-693 (794)
393 cd08819 CARD_MDA5_2 Caspase ac 47.1 1.1E+02 0.0024 24.8 6.8 64 382-446 22-85 (88)
394 KOG4507 Uncharacterized conser 47.0 68 0.0015 35.6 7.5 95 574-671 618-716 (886)
395 PF11663 Toxin_YhaV: Toxin wit 46.6 22 0.00047 31.3 3.1 34 538-573 105-138 (140)
396 KOG4077 Cytochrome c oxidase, 46.4 1.2E+02 0.0027 26.4 7.4 48 616-663 69-116 (149)
397 KOG2063 Vacuolar assembly/sort 46.2 6.1E+02 0.013 30.6 16.0 211 430-675 507-742 (877)
398 PF14853 Fis1_TPR_C: Fis1 C-te 45.2 57 0.0012 23.6 4.6 35 534-570 7-41 (53)
399 PF09986 DUF2225: Uncharacteri 45.1 99 0.0021 30.2 7.9 61 633-693 120-193 (214)
400 KOG2422 Uncharacterized conser 45.0 3.2E+02 0.0069 30.7 12.0 43 645-687 356-400 (665)
401 KOG2066 Vacuolar assembly/sort 45.0 5.8E+02 0.012 30.0 25.0 74 197-273 394-467 (846)
402 PF07163 Pex26: Pex26 protein; 43.9 2.1E+02 0.0046 29.0 9.7 89 535-626 90-185 (309)
403 smart00386 HAT HAT (Half-A-TPR 43.8 28 0.00061 21.3 2.7 28 645-672 1-28 (33)
404 KOG2396 HAT (Half-A-TPR) repea 43.4 5E+02 0.011 28.8 31.3 66 124-190 104-170 (568)
405 PF15015 NYD-SP12_N: Spermatog 42.1 48 0.001 35.2 5.3 35 766-800 377-413 (569)
406 KOG3507 DNA-directed RNA polym 42.0 9.4 0.0002 27.6 0.2 11 792-802 20-30 (62)
407 PF11846 DUF3366: Domain of un 41.8 83 0.0018 30.1 6.9 37 626-662 139-175 (193)
408 PF14561 TPR_20: Tetratricopep 41.7 1.9E+02 0.0042 23.6 8.0 62 631-692 22-86 (90)
409 KOG2168 Cullins [Cell cycle co 41.4 6.8E+02 0.015 29.8 18.4 45 587-631 687-742 (835)
410 KOG1464 COP9 signalosome, subu 40.3 4E+02 0.0086 26.8 14.6 227 209-441 41-318 (440)
411 PF10579 Rapsyn_N: Rapsyn N-te 40.1 75 0.0016 25.2 4.8 47 540-586 18-66 (80)
412 KOG0686 COP9 signalosome, subu 39.8 3.3E+02 0.0071 29.2 10.7 58 499-556 152-215 (466)
413 PF11838 ERAP1_C: ERAP1-like C 39.7 4.6E+02 0.0099 27.3 20.2 108 478-587 146-261 (324)
414 KOG3364 Membrane protein invol 39.0 1.5E+02 0.0032 26.4 6.9 69 596-664 29-104 (149)
415 COG4941 Predicted RNA polymera 39.0 3.4E+02 0.0073 28.3 10.4 128 525-665 261-399 (415)
416 TIGR03504 FimV_Cterm FimV C-te 38.7 59 0.0013 22.5 3.7 25 333-357 5-29 (44)
417 PF11846 DUF3366: Domain of un 37.7 98 0.0021 29.6 6.7 32 594-625 139-170 (193)
418 TIGR03504 FimV_Cterm FimV C-te 37.3 59 0.0013 22.5 3.5 24 131-154 5-28 (44)
419 COG4890 Predicted outer membra 36.8 16 0.00035 23.0 0.6 10 770-779 11-20 (37)
420 cd02679 MIT_spastin MIT: domai 36.7 25 0.00055 27.9 1.9 19 675-693 49-67 (79)
421 PF10345 Cohesin_load: Cohesin 36.5 7.4E+02 0.016 28.8 34.3 23 670-692 582-604 (608)
422 COG1747 Uncharacterized N-term 36.5 6.4E+02 0.014 28.1 18.3 173 226-405 66-248 (711)
423 KOG3364 Membrane protein invol 36.5 2.1E+02 0.0046 25.5 7.4 70 560-631 29-104 (149)
424 PF10366 Vps39_1: Vacuolar sor 36.5 2.7E+02 0.0059 23.7 8.6 28 227-254 40-67 (108)
425 PRK10564 maltose regulon perip 35.8 56 0.0012 33.3 4.6 45 123-167 254-299 (303)
426 TIGR02710 CRISPR-associated pr 35.8 2.8E+02 0.0061 29.7 10.0 29 537-565 139-167 (380)
427 TIGR00686 phnA alkylphosphonat 35.4 19 0.00041 30.0 1.0 31 790-820 17-48 (109)
428 KOG0545 Aryl-hydrocarbon recep 35.0 1.6E+02 0.0035 29.1 7.2 87 606-692 185-291 (329)
429 KOG3807 Predicted membrane pro 34.5 2.7E+02 0.0058 28.7 8.9 168 472-671 226-402 (556)
430 PRK13342 recombination factor 33.5 6.7E+02 0.015 27.4 16.0 49 529-577 228-279 (413)
431 PF11848 DUF3368: Domain of un 33.4 1.3E+02 0.0028 21.1 4.9 33 136-168 13-45 (48)
432 PF11838 ERAP1_C: ERAP1-like C 33.0 5.8E+02 0.013 26.5 16.8 163 513-675 56-246 (324)
433 PF14689 SPOB_a: Sensor_kinase 32.9 71 0.0015 24.0 3.7 29 562-590 22-50 (62)
434 KOG3824 Huntingtin interacting 32.1 72 0.0016 32.3 4.6 77 641-729 126-202 (472)
435 PF10345 Cohesin_load: Cohesin 32.0 8.7E+02 0.019 28.2 31.5 30 527-556 571-605 (608)
436 COG5159 RPN6 26S proteasome re 31.9 3.6E+02 0.0079 27.3 9.2 132 334-465 10-167 (421)
437 PF13929 mRNA_stabil: mRNA sta 31.9 5.8E+02 0.013 26.2 13.6 62 459-520 199-261 (292)
438 KOG1586 Protein required for f 31.8 5.2E+02 0.011 25.6 14.9 98 578-675 129-241 (288)
439 KOG0403 Neoplastic transformat 31.6 7.1E+02 0.015 27.1 26.7 58 501-558 513-573 (645)
440 COG3947 Response regulator con 31.4 1.1E+02 0.0023 31.1 5.6 54 401-454 284-340 (361)
441 PF08225 Antimicrobial19: Pseu 31.1 17 0.00036 20.1 0.0 10 797-806 11-20 (23)
442 COG2912 Uncharacterized conser 31.0 1.1E+02 0.0024 30.8 5.7 52 639-690 189-240 (269)
443 COG5431 Uncharacterized metal- 30.9 14 0.00031 30.2 -0.3 11 824-834 47-57 (117)
444 PF11663 Toxin_YhaV: Toxin wit 30.7 61 0.0013 28.6 3.4 32 137-170 107-138 (140)
445 PF14376 Haem_bd: Haem-binding 30.7 18 0.00039 32.4 0.2 10 792-801 41-50 (137)
446 PF11525 CopK: Copper resistan 30.5 21 0.00045 27.0 0.5 20 811-830 8-27 (73)
447 PHA02537 M terminase endonucle 30.2 3E+02 0.0066 27.1 8.5 36 527-563 83-119 (230)
448 PF04090 RNA_pol_I_TF: RNA pol 30.1 3.8E+02 0.0083 25.8 8.9 30 528-557 41-70 (199)
449 PF01147 Crust_neurohorm: Crus 29.9 8.7 0.00019 29.7 -1.6 14 790-803 18-31 (73)
450 KOG2471 TPR repeat-containing 29.8 7.1E+02 0.015 27.5 11.5 103 642-752 217-329 (696)
451 cd00280 TRFH Telomeric Repeat 29.7 2.9E+02 0.0063 26.1 7.6 30 637-667 117-146 (200)
452 KOG4077 Cytochrome c oxidase, 29.6 2.2E+02 0.0048 24.9 6.3 46 346-391 68-113 (149)
453 KOG2396 HAT (Half-A-TPR) repea 29.2 8.3E+02 0.018 27.2 30.6 77 41-119 89-166 (568)
454 PF14863 Alkyl_sulf_dimr: Alky 28.8 1.1E+02 0.0025 27.5 4.9 71 616-689 58-128 (141)
455 KOG1258 mRNA processing protei 28.6 9.1E+02 0.02 27.4 31.3 404 22-473 44-486 (577)
456 KOG1550 Extracellular protein 28.6 9.4E+02 0.02 27.6 16.3 21 377-397 308-328 (552)
457 PRK10564 maltose regulon perip 28.5 98 0.0021 31.7 4.9 41 530-570 259-299 (303)
458 PF07575 Nucleopor_Nup85: Nup8 28.4 2.7E+02 0.0059 32.0 9.3 145 213-371 392-539 (566)
459 smart00544 MA3 Domain in DAP-5 28.4 3.3E+02 0.0071 23.1 7.8 23 432-454 7-29 (113)
460 KOG4521 Nuclear pore complex, 28.1 1.3E+03 0.027 28.9 14.5 60 566-625 986-1047(1480)
461 PF02847 MA3: MA3 domain; Int 27.9 1.5E+02 0.0033 25.1 5.6 22 432-453 7-28 (113)
462 COG3043 NapB Nitrate reductase 27.8 41 0.00088 29.8 1.8 42 740-811 62-103 (155)
463 cd08819 CARD_MDA5_2 Caspase ac 27.7 2.8E+02 0.0061 22.6 6.3 38 509-547 48-85 (88)
464 COG2178 Predicted RNA-binding 27.5 2.9E+02 0.0064 26.3 7.4 51 507-557 39-98 (204)
465 KOG0545 Aryl-hydrocarbon recep 27.4 6.3E+02 0.014 25.2 10.0 61 603-663 234-296 (329)
466 PF14689 SPOB_a: Sensor_kinase 27.2 81 0.0018 23.6 3.2 26 430-455 26-51 (62)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 26.4 3.1E+02 0.0068 24.1 7.3 42 380-421 81-124 (126)
468 PF11848 DUF3368: Domain of un 26.2 2.2E+02 0.0048 20.0 5.1 36 336-371 11-46 (48)
469 PF12862 Apc5: Anaphase-promot 26.2 1.9E+02 0.0041 23.7 5.6 21 640-660 50-70 (94)
470 KOG1464 COP9 signalosome, subu 26.2 6.8E+02 0.015 25.2 15.1 240 411-662 42-330 (440)
471 PRK14700 recombination factor 26.0 5.7E+02 0.012 26.4 9.8 67 329-395 125-199 (300)
472 KOG4279 Serine/threonine prote 25.9 3.4E+02 0.0074 31.5 8.7 66 530-598 203-279 (1226)
473 PF04190 DUF410: Protein of un 25.8 7E+02 0.015 25.2 12.9 160 104-290 1-170 (260)
474 KOG0292 Vesicle coat complex C 25.1 9E+02 0.019 29.0 11.9 130 505-659 651-781 (1202)
475 KOG2659 LisH motif-containing 24.0 7E+02 0.015 24.5 11.7 93 530-625 28-129 (228)
476 PF07163 Pex26: Pex26 protein; 23.7 4.3E+02 0.0094 26.9 8.2 86 63-148 88-181 (309)
477 PF12862 Apc5: Anaphase-promot 22.9 1.8E+02 0.004 23.8 4.9 49 643-691 10-67 (94)
478 COG2909 MalT ATP-dependent tra 22.8 1.4E+03 0.03 27.5 21.6 187 438-625 426-644 (894)
479 smart00638 LPD_N Lipoprotein N 22.7 1.2E+03 0.026 26.8 19.0 271 176-472 291-573 (574)
480 PRK10220 hypothetical protein; 22.0 47 0.001 27.8 1.1 31 790-820 18-49 (111)
481 TIGR02270 conserved hypothetic 22.0 1.1E+03 0.023 25.9 22.8 27 499-525 254-280 (410)
482 PLN03192 Voltage-dependent pot 21.9 1E+03 0.022 28.9 13.0 20 201-220 625-644 (823)
483 PRK14958 DNA polymerase III su 21.5 7.2E+02 0.016 28.1 10.7 38 526-564 244-281 (509)
484 PF10475 DUF2450: Protein of u 21.0 3.4E+02 0.0074 28.0 7.6 52 402-455 104-155 (291)
485 COG3058 FdhE Uncharacterized p 21.0 34 0.00074 33.9 0.1 16 793-808 253-268 (308)
486 KOG0991 Replication factor C, 20.8 8.3E+02 0.018 24.2 11.1 143 403-569 137-279 (333)
487 KOG1497 COP9 signalosome, subu 20.3 9.9E+02 0.021 24.9 10.6 21 669-689 107-127 (399)
488 COG4976 Predicted methyltransf 20.1 1.5E+02 0.0031 29.1 4.0 51 643-693 7-57 (287)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-168 Score=1500.12 Aligned_cols=809 Identities=35% Similarity=0.665 Sum_probs=798.1
Q ss_pred CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH
Q 043955 20 QRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSL 99 (835)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 99 (835)
.++..++|.++.+|++.|++++|+.+|++|...|++|+..+|..++++|...+.++.|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHH
Q 043955 100 VAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLG 179 (835)
Q Consensus 100 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 179 (835)
+++|+++|+++.|.++|++|+. ||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 9999999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 043955 180 MEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKP 259 (835)
Q Consensus 180 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (835)
.++|..+++.|+.+|+.++|+||++|+++|++++|.++|++|++||.++||+||.+|++.|++++|+++|++|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHh
Q 043955 260 DQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQ 339 (835)
Q Consensus 260 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 339 (835)
|..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHH
Q 043955 340 NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNV 418 (835)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~ 418 (835)
.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.. ..++|+|+++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999964 55999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchh
Q 043955 419 FESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGS 498 (835)
Q Consensus 419 f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 498 (835)
|++|+++|+++||+||.+|.++|+.++|+++|++|.. +++||.+||+++|.+|++.|+++.|+++|..+.+.|+.+|..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999986 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGL 578 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 578 (835)
++|+||++|+|||++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||.+||+++|.+|+|.|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 579 INEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
+++|+++|++|.+++|+.|+.+||+||+++|+|+|+++||++++++||++||+.+|++|+++|+.|||++.|+.++++++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 659 ELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 659 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
+++|+++++|++|+|+|+..|+|++|.++|+.|+++|++|+|||||||++|++|.|++||++||+.++||.+|++|..+|
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccCCcccccccchhHHHhhhhhhhHHHHHHHhhccCCCCCcEEEEeccccccCccchhhhhhhhhCceEEeecC
Q 043955 739 EREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDA 818 (835)
Q Consensus 739 ~~~~~y~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 818 (835)
++.||+|||+.++|+ +||+||..|++||||||||||||+||||+||||+||||||+|||+++||||||++|||||||+
T Consensus 765 -~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 842 (857)
T PLN03077 765 -KASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDT 842 (857)
T ss_pred -HhCCcCCCcchhccc-cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecC
Confidence 999999999999954 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcccCCCC
Q 043955 819 NRFHHFEAGVCSCGD 833 (835)
Q Consensus 819 ~rfh~f~~g~csc~d 833 (835)
+|||||+||+|||||
T Consensus 843 ~rfh~f~~g~csc~d 857 (857)
T PLN03077 843 EQFHHFKDGECSCGD 857 (857)
T ss_pred CcceeCCCCcccCCC
Confidence 999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-138 Score=1212.24 Aligned_cols=612 Identities=35% Similarity=0.628 Sum_probs=604.2
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccch
Q 043955 223 NKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAG-QKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNT 301 (835)
Q Consensus 223 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 301 (835)
.++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHH
Q 043955 302 LMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQT 381 (835)
Q Consensus 302 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 381 (835)
|+++|+++|+++.|.++|++|+.+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||..++.+|+..+..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcC
Q 043955 382 KEIHGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVES 460 (835)
Q Consensus 382 ~~i~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p 460 (835)
+++|..+.+.|+.. ..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++|...|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999864 55999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHh
Q 043955 461 DSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGL 540 (835)
Q Consensus 461 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 540 (835)
|..||++++.+|++.|.++.|+++|+.+.+.|+.+|..++|+||++|+|||++++|.++|++|.+||+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
+|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|+++|+.|.+++|+.|+..||+||+++|+|+|+++||++
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCC
Q 043955 621 FVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTP 700 (835)
Q Consensus 621 ~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~ 700 (835)
++++||++|+..+|++|+++|+.||+++.|+.+++++++++|++++.|+.|+|+|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHhHHhCCcccCCcccccccchhHHHhhhhhhhHHHHHHHhhccC
Q 043955 701 GSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKS 780 (835)
Q Consensus 701 g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~y~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~ 780 (835)
||||||+++++|.|++||++||+.++||.+|++|..+| ++.||+||+++++||+++++|+..|++||||||||||||+|
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~-~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI-SEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH-HHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeccccccCccchhhhhhhhhCceEEeecCCccccccCcccCCCCCC
Q 043955 781 TEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCSCGDYW 835 (835)
Q Consensus 781 ~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 835 (835)
|||+||||+||||||+|||+|+||||||+||||||||+||||||+||+|||||||
T Consensus 643 ~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-89 Score=818.09 Aligned_cols=593 Identities=33% Similarity=0.579 Sum_probs=571.1
Q ss_pred CCCCCCChHhHHHHHHhcCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHH
Q 043955 1 MYGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKI 80 (835)
Q Consensus 1 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i 80 (835)
+|+++|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..+.++
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred HHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 043955 81 HGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNA 160 (835)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 160 (835)
|.++.+.|+.||+.++|+||.+|+++|++++|.++|++|+. ||+++||+||.+|++.|++++|+++|++|...|+.||.
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCC
Q 043955 161 YTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQND 240 (835)
Q Consensus 161 ~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 240 (835)
.||+.+|.+|++.|+++.|+++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..||.++||+||.+|++.|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHH
Q 043955 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFY 320 (835)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 320 (835)
++++|+++|++|...|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCc-hhHH
Q 043955 321 QMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD-LVIL 399 (835)
Q Consensus 321 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~ 399 (835)
+|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||.++|.+|++.|+++.++++|..+++.|+.. ..++
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 99999999999999999999999999999999986 699999999999999999999999999999999999975 4599
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchh
Q 043955 400 NAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479 (835)
Q Consensus 400 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 479 (835)
|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.++
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043955 480 KGKELNGFII-RKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ-TKDLILWTSMINANGLHGRGKVAIDLFYKMEAE 557 (835)
Q Consensus 480 ~a~~i~~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 557 (835)
+|.+++..|. +.|+.|+..+|+.++++|+++|++++|.++|++|+ +||..+|++|+.+|..+|+.+.+....+++.+
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~- 685 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE- 685 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-
Confidence 9999999999 68999999999999999999999999999999996 78999999999999999999998888888887
Q ss_pred CCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh
Q 043955 558 SFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599 (835)
Q Consensus 558 g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 599 (835)
+.|+.. +|..+...|+..|+++++.++.+.|++. |+.+++
T Consensus 686 -l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~ 726 (857)
T PLN03077 686 -LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDP 726 (857)
T ss_pred -hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCC
Confidence 677764 4555566788888888888888888765 766654
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-70 Score=637.54 Aligned_cols=479 Identities=25% Similarity=0.414 Sum_probs=445.6
Q ss_pred HHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCC
Q 043955 115 LFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVG-LVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNL 193 (835)
Q Consensus 115 ~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~ 193 (835)
.++..+..++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..+.+.|+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred hcccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc
Confidence 34444444688899999999999999999999999999864 78999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 043955 194 QVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGR 273 (835)
Q Consensus 194 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 273 (835)
|..++|.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 274 LGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTV 353 (835)
Q Consensus 274 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (835)
.|..+.++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+.+|+++||+||.+|+++|++++|+++|++|
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC-chhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHH
Q 043955 354 QLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTS 432 (835)
Q Consensus 354 ~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~ 432 (835)
...|+.||..||++++.+|++.|.++.|+++|+.+.+.|++ +..++|+|+++|+|+|++++|.++|++|.+||+++||+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999986 45599999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcC
Q 043955 433 MISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR-KGFNLEGSVASSLVDMYARCG 511 (835)
Q Consensus 433 li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~k~g 511 (835)
||.+|+++|+.++|+++|++|...|+.||.+||+++|.+|++.|.+++|.+++..|.+ .|+.|+..+|+.+|++|+++|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986 699999999999999999999
Q ss_pred ChhhHHHHhhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHh
Q 043955 512 ALDIANKVFNCVQ-TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIM 589 (835)
Q Consensus 512 ~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (835)
++++|.++|++|+ .||..+|++|+.+|..+|+.+.|..+++++.+ +.|+. .+|+.++..|++.|++++|.++++.|
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999988886 56777788888888888887777777777764 55653 46777777777777777777777777
Q ss_pred hhcCCCC
Q 043955 590 RCDYQLD 596 (835)
Q Consensus 590 ~~~~~i~ 596 (835)
++. |+.
T Consensus 555 ~~~-g~~ 560 (697)
T PLN03081 555 KRK-GLS 560 (697)
T ss_pred HHc-CCc
Confidence 654 543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-68 Score=618.89 Aligned_cols=525 Identities=15% Similarity=0.175 Sum_probs=452.6
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhhcCC----CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 043955 89 YDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGE----KEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFV 164 (835)
Q Consensus 89 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 164 (835)
..++...|..+++.++++|++++|.++|++|+. .++...++.++.+|.+.|..++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 445666777777778888888888888888854 13344455666778888888888888887763 7888888
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCC----CCCcccHHHHHHHHHcCC
Q 043955 165 AALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLE----NKDSVSWNSMLTGFVQND 240 (835)
Q Consensus 165 ~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g 240 (835)
.+|++|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 8888888888888888888888888888888888888888888888888888888887 478888888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHH--hCCCccccccchhhhhhhccCChhHHHHH
Q 043955 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIK--QGFVSDLQIGNTLMDMYAKCCCVNYMGRV 318 (835)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 318 (835)
++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8899999999998889999999999999999999999999999998876 57888888999999999999999999999
Q ss_pred HHhcCCC----CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC
Q 043955 319 FYQMTAQ----DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS 394 (835)
Q Consensus 319 f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 394 (835)
|+.|.+. +..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|..+.+.|..
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9988754 568999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -chhHHHHHHHHHHhcCChhhHHHHHHhcC----CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHH
Q 043955 395 -DLVILNAIVDVYGKCGNIDYSRNVFESIE----SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSAL 469 (835)
Q Consensus 395 -~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll 469 (835)
+..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55699999999999999999999999995 5899999999999999999999999999999999999999999999
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH----HHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChH
Q 043955 470 SAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDM----YARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGK 545 (835)
Q Consensus 470 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~----y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 545 (835)
.+|++.|+++.|.++|..|.+.|+.||..++++|+++ |.+|+++.++...|+.+...+...|+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~------------ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS------------ 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH------------
Confidence 9999999999999999999999999999999999987 567777777777777666566666764
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 546 VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
+|+.+|++|++.|+.||.+||..+|.++...+.++.+..+++.|... +..|+..+|+++++.+++. .++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 59999999999999999999999997666777777666666655432 4556678899999988542 47899999999
Q ss_pred ---CCCCCHH
Q 043955 626 ---QIEPTAE 632 (835)
Q Consensus 626 ---~~~p~~~ 632 (835)
++.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 7778764
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.9e-67 Score=612.77 Aligned_cols=510 Identities=17% Similarity=0.219 Sum_probs=461.0
Q ss_pred CCCCCChHhHHHHHHhcCCCCcch-----HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchH
Q 043955 2 YGKCGSVLDAEQLFDKVSQRTVFT-----WNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDC 76 (835)
Q Consensus 2 y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 76 (835)
|+++|++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|+.|.. ||..+|+.+|.+|++.|+++.
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence 457899999999999999876554 45667779999999999999999964 999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 043955 77 GAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG---EKEDVVLWNSIISAYSASGQCLEALGLFREMQR 153 (835)
Q Consensus 77 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 153 (835)
|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|. ..||.++||+||.+|++.|++++|+++|++|..
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999994 358999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC----CCcc
Q 043955 154 VGLVTNAYTFVAALQACEDSSFETLGMEIHAATVK--SGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN----KDSV 227 (835)
Q Consensus 154 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~d~~ 227 (835)
.|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||++|+++|++++|.++|+.|.+ |+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 99999999999999999999999999999999987 68999999999999999999999999999999976 5679
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhh
Q 043955 228 SWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYA 307 (835)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 307 (835)
+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHhcC----CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHH
Q 043955 308 KCCCVNYMGRVFYQMT----AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKE 383 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 383 (835)
++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999994 679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-chhHHHHHHHH----HHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCC
Q 043955 384 IHGYIIRKGLS-DLVILNAIVDV----YGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANV 458 (835)
Q Consensus 384 i~~~~~~~~~~-~~~~~~~li~~----y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~ 458 (835)
+|..+.+.|+. +..+|++|+++ |.+++...++...|+.+...+...|+ ++|+.+|++|++.|+
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAGT 843 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCCC
Confidence 99999999996 45599999987 44556655555566555445555565 459999999999999
Q ss_pred cCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC----CCChhHHHHH
Q 043955 459 ESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ----TKDLILWTSM 534 (835)
Q Consensus 459 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~l 534 (835)
.||..||+.+|.++. +.+..+.+..+|+.|. .++..+|+++
T Consensus 844 ~Pd~~T~~~vL~cl~-----------------------------------~~~~~~~~~~m~~~m~~~~~~~~~~~y~~L 888 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQ-----------------------------------LPHDATLRNRLIENLGISADSQKQSNLSTL 888 (1060)
T ss_pred CCCHHHHHHHHHHhc-----------------------------------ccccHHHHHHHHHHhccCCCCcchhhhHHH
Confidence 999999988884433 3344455555555543 3466788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHI 564 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~ 564 (835)
|.++.+. .++|+.+|++|...|+.|+..
T Consensus 889 i~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 889 VDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8887433 468999999999999999985
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.5e-36 Score=364.59 Aligned_cols=677 Identities=12% Similarity=0.021 Sum_probs=384.5
Q ss_pred CCCCChHhHHHHHHhcCC---CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHH
Q 043955 3 GKCGSVLDAEQLFDKVSQ---RTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAK 79 (835)
Q Consensus 3 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 79 (835)
...|++++|.++++++.. ++...|..+...+...|++++|...|++..... +.+...+..+...+...|+++.|..
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788888888887653 244567777777888888888888888876643 3445566667777777888888888
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC-CCCC-eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 043955 80 IHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG-EKED-VVLWNSIISAYSASGQCLEALGLFREMQRVGLV 157 (835)
Q Consensus 80 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-~~~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 157 (835)
.++.+.+.... +..........+...|++++|...|+++- ..|+ ...+..+...+...|++++|...|++..... +
T Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p 326 (899)
T TIGR02917 249 HADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-P 326 (899)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 88777765432 22233333334455677777777776651 1122 2233344445566667777777766665542 2
Q ss_pred CChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHHH
Q 043955 158 TNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSMLT 234 (835)
Q Consensus 158 p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~ 234 (835)
.+...+..+...+...|+++.+.+.+..+.+... .+...+..+...|.+.|++++|.+.|+++.+ .+...|..+..
T Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 405 (899)
T TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2334444555556666666666666666655432 2445556666666666666666666665543 23345555566
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhH
Q 043955 235 GFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNY 314 (835)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 314 (835)
.+...|++++|++.|+++......+ ......++..+.+.|+.+.+..++..+.+. .+.+..++..+...|...|+.++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHH
Confidence 6666666666666666665533111 123334445555666666666666655543 23344555556666666666666
Q ss_pred HHHHHHhcCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHh
Q 043955 315 MGRVFYQMTA---QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRK 391 (835)
Q Consensus 315 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 391 (835)
|.+.|+++.. .+...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|+.+.+...+..+.+.
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666665432 233445555555666666666666666665432 223344555555555566666666666666555
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhH
Q 043955 392 GLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSA 468 (835)
Q Consensus 392 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~l 468 (835)
.+.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.... +.+...+..+
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 555545555566666666666666666655542 244556666666666666666666666655432 1233344445
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChH
Q 043955 469 LSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGK 545 (835)
Q Consensus 469 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 545 (835)
...+...|+.+.|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+ .+...|..+...+...|+++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence 555555666666666665555432 22344555556666666666666666655542 23445555555556666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 546 VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
+|++.|+++.. ..|+..++..+..++.+.|++++|.+.++.+.+. .| +...+..+++++.+.|+.++|.+.+++
T Consensus 721 ~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 721 AAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 66666666555 2344444555555555566666666655555432 23 345555555556566666666655555
Q ss_pred C-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 625 M-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 625 m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+ ...| ++.++..+...+...|+ +.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+.
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 2222 34455555555555555 44555555555555555555555555555555555555555555443
No 8
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=1.5e-42 Score=297.00 Aligned_cols=107 Identities=57% Similarity=1.022 Sum_probs=99.6
Q ss_pred CceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHhHHhCCcccCCcccccccchhHH--------HhhhhhhhHHH
Q 043955 700 PGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEK--------VQMLYGHSERL 771 (835)
Q Consensus 700 ~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~y~~~~~~~~~~~~~~~k--------~~~~~~hse~l 771 (835)
.||||+++ |.|++||++||+. ++..++ ...||.|+++.+.||++++++ +..+++|||||
T Consensus 1 ~~~~w~~~----h~F~sgd~shp~~--------~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKl 67 (116)
T PF14432_consen 1 GGCSWIEV----HSFVSGDRSHPQS--------ELINKM-KEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKL 67 (116)
T ss_pred CCCCccce----EEEEeCCCcCccH--------HHHHHH-HHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHH
Confidence 38999988 9999999999998 445666 788999999999999988776 67999999999
Q ss_pred HHHHhhccCCCCCcEEEEecc-ccccCccchhhhhhhhhCceEEeecCCcccccc
Q 043955 772 AIAYGVLKSTEGSLIRITKNL-RVCVDCHSFCKLVSRLFGRELVVRDANRFHHFE 825 (835)
Q Consensus 772 a~~~~~~~~~~~~~~~~~knl-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 825 (835)
|||||||+| ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 68 Aiafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 68 AIAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 999999999 999999 999999999999999999999999999999997
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-35 Score=361.92 Aligned_cols=676 Identities=9% Similarity=-0.004 Sum_probs=530.1
Q ss_pred CCCCChHhHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHH
Q 043955 3 GKCGSVLDAEQLFDKVSQ--R-TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAK 79 (835)
Q Consensus 3 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 79 (835)
.+.|++++|.+.|+++.+ | +...|..+...+...|++++|+.+++++.... +++...+..+...+...|+++.|..
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 214 (899)
T TIGR02917 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALA 214 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHH
Confidence 345666666666666543 1 33456666666666677777777776665532 3344455555566666677777777
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC--CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 043955 80 IHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG--EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLV 157 (835)
Q Consensus 80 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 157 (835)
.++.+++... .+..++..+...+...|++++|...|+.+. .+.+...+......+...|++++|+..|+++.+.+
T Consensus 215 ~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-- 291 (899)
T TIGR02917 215 AYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA-- 291 (899)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 7776665532 344556666666777777777777776651 11122233333334455677777777777776543
Q ss_pred CCh-hhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHH
Q 043955 158 TNA-YTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSML 233 (835)
Q Consensus 158 p~~-~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li 233 (835)
|+. ..+..+...+...|+++.|...+..+++.... +......+...+.+.|++++|...++.+.. .+...|+.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 370 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLG 370 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 332 22223334466778888888888888876543 456677888899999999999999988764 3566788899
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCCh
Q 043955 234 TGFVQNDLYCKAMQFFRELQGAGQKPD-QVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCV 312 (835)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 312 (835)
..+.+.|++++|.++|+++... .|+ ...+..+...+...|+.+.+...+..+.+.... .......++..|.+.|+.
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 447 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQF 447 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCH
Confidence 9999999999999999998774 344 345667777788899999999999998876532 334556678899999999
Q ss_pred hHHHHHHHhcCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHH
Q 043955 313 NYMGRVFYQMTA---QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYII 389 (835)
Q Consensus 313 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~ 389 (835)
++|.++++.+.. .+..+|+.+...|...|++++|...|.++.... +.+...+..+...+...|+++.+...+..++
T Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998864 366789999999999999999999999998753 2334456677778889999999999999999
Q ss_pred HhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhH
Q 043955 390 RKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLV 466 (835)
Q Consensus 390 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~ 466 (835)
+..+.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|+.+++++.... ..+..++.
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 99888888999999999999999999999998854 356778889999999999999999999998743 45667888
Q ss_pred hHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCC
Q 043955 467 SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGR 543 (835)
Q Consensus 467 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 543 (835)
.+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|+.++|..+|+++.+ .+..+|..++..+...|+
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 89999999999999999999998764 34567788999999999999999999998763 467899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 043955 544 GKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVR 623 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 623 (835)
.++|+++++.+.+.+ .++...+..+...+...|++++|...|+.+. ...|+...+..++.++.+.|++++|.+.++
T Consensus 685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL---KRAPSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999864 4456778888888999999999999999887 456777888889999999999999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 624 SM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 624 ~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
++ ...| +..++..+...+...|+.+.|+..++++++..|+++..+..++++|...|+ ++|.++.+...+.
T Consensus 761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 88 3344 566888888889999999999999999999999999999999999999999 8898887776553
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.8e-23 Score=253.03 Aligned_cols=637 Identities=11% Similarity=-0.001 Sum_probs=400.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCC-CCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchH-----------
Q 043955 29 MLGAYVSNGEPLRVLETYSRMRVLGISV-DAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIV----------- 96 (835)
Q Consensus 29 li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~----------- 96 (835)
..+.+...++.+.|.+.++++... .| +...+..+...+...|+.++|.+.++.+.+..... ....
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~-~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS-NAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHhcCC
Confidence 344556667777777777766653 33 33455556666667777777777777776655221 1111
Q ss_pred -----HHHHHHHHhcCChHHHHHHHhhcC-CCCCeeeHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043955 97 -----NSLVAMYAKCYDFRKARQLFDRMG-EKEDVVLWN--SIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQ 168 (835)
Q Consensus 97 -----~~Li~~y~~~g~~~~A~~~f~~m~-~~~~~~~~n--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 168 (835)
-.+...+.+.|++++|.+.|+..- ..|+..... .+.......|+.++|++.|+++.+.. +-+......+-.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 112224455555555555555541 111111110 00111112355555555555555432 112223333444
Q ss_pred HhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHH
Q 043955 169 ACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQF 248 (835)
Q Consensus 169 a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 248 (835)
.+...|+.++|...+..+.+..... ..............+.... ....+...+..+-.......|...
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~-~~aa~~~~~~l~~~~~~~~-----------~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGR-DAAAQLWYGQIKDMPVSDA-----------SVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccCCChh-----------hHHHHHHHHHHCCCchHHHHHHHH
Confidence 4445555555555555543321100 0000000000000000000 111122222222222234455555
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCc-
Q 043955 249 FRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDF- 327 (835)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~- 327 (835)
+.++......|+... ...-.++...|+++.|...++..++.. +.+..++..|...|.+.|+.++|...|++....+.
T Consensus 258 L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 258 LAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555443322333221 122334456677777777777777653 22455666777777777888888877777643211
Q ss_pred ----ccHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHh
Q 043955 328 ----ISWTTI------------IAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRK 391 (835)
Q Consensus 328 ----~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 391 (835)
..|..+ ...+.+.|++++|+..|++..... +.+...+..+-..+...|+++.|.+.+..+++.
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 123222 345678899999999999988763 223445566677788889999999999999998
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC------------chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc
Q 043955 392 GLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKD------------VVSWTSMISSYVHNGLANEALELFYLMNEANVE 459 (835)
Q Consensus 392 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~ 459 (835)
.+.+...+..+...|. .++.++|...++.++... ...+..+...+...|++++|++.|++.++ ..
T Consensus 415 ~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~ 491 (1157)
T PRK11447 415 DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LD 491 (1157)
T ss_pred CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 8877777777877775 457899999888776421 22345566778889999999999999987 45
Q ss_pred CCh-hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC----Chh-----
Q 043955 460 SDS-ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK----DLI----- 529 (835)
Q Consensus 460 p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----~~~----- 529 (835)
|+. ..+..+...+...|++++|...+..+++.. +.++....++...+.+.|+.++|...++.+... +..
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 653 455667778889999999999999988753 234445555666778899999999999988642 111
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHH
Q 043955 530 ----LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYAC 604 (835)
Q Consensus 530 ----~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~ 604 (835)
.+..+...+...|+.++|+++++. .+++...+..+...+...|+.++|...|+... .+.| +...+..
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al---~~~P~~~~a~~~ 642 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL---TREPGNADARLG 642 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 123456778899999999999872 23344556777788899999999999999887 4577 5888999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC------chHHHHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG------NYVLISNVFA 676 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~ 676 (835)
++.+|...|++++|++.++.. ...|+ ..++..+..++...|+.+.|...++++++..|+++. .+..++.+|.
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999987 45564 457777888888899999999999999999887654 4566799999
Q ss_pred hcCCchHHHHHHH-HHHcCCC
Q 043955 677 ASRKWKDVEQVRM-RMRGSGL 696 (835)
Q Consensus 677 ~~g~~~~a~~~~~-~m~~~~~ 696 (835)
..|++++|....+ .|...|+
T Consensus 723 ~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 723 QTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred HcCCHHHHHHHHHHHHhhcCC
Confidence 9999999998854 4454455
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=5.3e-23 Score=252.61 Aligned_cols=627 Identities=12% Similarity=0.016 Sum_probs=428.0
Q ss_pred CCCChHhHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccH-----------------HH
Q 043955 4 KCGSVLDAEQLFDKVSQ--R-TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTF-----------------PC 63 (835)
Q Consensus 4 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~ 63 (835)
..++.+.|.+.++++.. | |+..+..++..+.+.|+.++|...++++.+.. |+...+ ..
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHH
Confidence 45788889999888763 3 66788889999999999999999999998853 544333 22
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCCh
Q 043955 64 VIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQC 141 (835)
Q Consensus 64 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~~ 141 (835)
+.+.+...|++++|.+.++.+.+...+........+.......|+.++|++.|+++ ..+.+...+..+...+...|+.
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 23457788999999999999987643221111111222233459999999999998 2223566788888999999999
Q ss_pred hHHHHHHHHHHHCCCCC----------------Chh---hHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 043955 142 LEALGLFREMQRVGLVT----------------NAY---TFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALI 202 (835)
Q Consensus 142 ~~A~~l~~~m~~~g~~p----------------~~~---t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li 202 (835)
++|++.|+++....... +.. .+...+..+-.......+...+....+....|+.. ...+.
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHH
Confidence 99999999987542110 000 11111111222222334444444443333333322 12345
Q ss_pred HHHHhCCChhHHHHHHhcCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHH------------H
Q 043955 203 AMYARCGKMTEAAGVLYQLEN--K-DSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQ-VCTV------------N 266 (835)
Q Consensus 203 ~~y~~~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~------------~ 266 (835)
..+...|++++|...|++..+ | +...+..+...|.+.|++++|+..|++..+....... ..+. .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 667788999999999987754 3 5677888889999999999999999988765322111 1111 1
Q ss_pred HHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCCh
Q 043955 267 AVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCH 343 (835)
Q Consensus 267 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~ 343 (835)
.-..+.+.|++++|...+..+++.. +.+...+..|...|...|++++|.+.|++.... +...+..+...|. .++.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 1234567788888888888888764 234456667778888888888888888887543 3445666666664 4567
Q ss_pred HHHHHHHHHHHHcCCCC--------ChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhH
Q 043955 344 LKALELFRTVQLEGLDA--------DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYS 415 (835)
Q Consensus 344 ~~A~~~~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 415 (835)
++|+.+++.+....... ....+......+...|++++|.+.+..+++..+.+..++..+...|.+.|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 88888877654321000 0112333444566677888888888888887777766777788888888888888
Q ss_pred HHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhC
Q 043955 416 RNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKG 492 (835)
Q Consensus 416 ~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 492 (835)
...|+++.+ | +...+..+...+.+.|+.++|+..++++......++...+. ..+
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~-------------------~~l---- 571 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA-------------------QRL---- 571 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH-------------------HHH----
Confidence 888877643 2 44444444455666778888888777764322111111000 000
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 043955 493 FNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLY 571 (835)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~ 571 (835)
.......+.+.|...|+.++|.++++. ...+...+..+...|.+.|+.++|++.|++..+ ..|+. ..+..+..
T Consensus 572 ---~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~ 645 (1157)
T PRK11447 572 ---QSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIE 645 (1157)
T ss_pred ---hhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 001123456778899999999999984 334666788899999999999999999999998 46764 57888889
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC---C----CHHHHHHHHHHHh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIE---P----TAEVWCALLGACR 642 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~---p----~~~~~~~ll~a~~ 642 (835)
.+...|+.++|.+.++... ...| +...+..+..++.+.|++++|.++++++ +.. | ++.++..+.....
T Consensus 646 ~~~~~g~~~eA~~~l~~ll---~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLP---ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999776 4566 4677788899999999999999999987 222 2 2346666778889
Q ss_pred hcCchhHHHHHHHHHHh---cCCCCCCc
Q 043955 643 VHSNKELGEIVAKKLLE---LDPGNPGN 667 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~---l~p~~~~~ 667 (835)
..|+.+.|+..+++++. +.|..++.
T Consensus 723 ~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 723 QTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 99999999999999985 55655554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=4.4e-22 Score=232.88 Aligned_cols=634 Identities=9% Similarity=-0.022 Sum_probs=436.3
Q ss_pred HHHHHHHH--HhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 043955 26 WNAMLGAY--VSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMY 103 (835)
Q Consensus 26 ~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 103 (835)
+..+..++ ...|++++|+..|++..+.. |-+...+..+...+...|+.++|....+..++.. |+...+..++..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh
Confidence 33344443 33489999999999988753 2234577888888899999999999998888764 4433333333322
Q ss_pred HhcCChHHHHHHHhhc--CCCCCeeeHHHHHHH--------HHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHhhc
Q 043955 104 AKCYDFRKARQLFDRM--GEKEDVVLWNSIISA--------YSASGQCLEALGLFREMQRVGLVTNAYTFVAA-LQACED 172 (835)
Q Consensus 104 ~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~ 172 (835)
++.++|..+++++ ..+-+...+..+... |.+. ++|.+.++ .......|+..+.... .+.+..
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 8888999999988 221233333333333 6665 44444444 4433345555555555 788889
Q ss_pred CCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-CCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHH
Q 043955 173 SSFETLGMEIHAATVKSGQNLQVYVANALIAMYAR-CGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRE 251 (835)
Q Consensus 173 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (835)
.++++.+..++..+.+.+... ......|-..|.. .++ +.+..+++...+.|...+..+...|.+.|+.++|..++++
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999999987654 4445666668887 466 8888887765556888899999999999999999999999
Q ss_pred HHHCCCC-CCcchHHHHHHHHhccCChHh-HHHHHHHHHHhCCCcc-ccccchhhhhhhccCChhHHHHHHHhcCCCCcc
Q 043955 252 LQGAGQK-PDQVCTVNAVSASGRLGNLLN-GKELHAYAIKQGFVSD-LQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFI 328 (835)
Q Consensus 252 m~~~g~~-p~~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~ 328 (835)
+...-.. |...++.-.+ .+.+.... +..-+. + .+.++ ....-.+++.+.+.+..+.+.++.+ ....+..
T Consensus 273 ~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 344 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLL---SKYSANPVQALANYT---V-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM 344 (987)
T ss_pred CcccccCCCccHHHHHHH---HhccCchhhhccchh---h-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH
Confidence 8765333 5555544443 33333221 100000 0 01111 1123344777888888887777744 3222332
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCC---CchhHHHHHHHH
Q 043955 329 SWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGL---SDLVILNAIVDV 405 (835)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~li~~ 405 (835)
.-.=..+....+...++...++.|-+... -+....-.+--.....|+.+++.+++........ .+..+.+-|++.
T Consensus 345 -~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 345 -LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred -HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 11111222344666777777777765411 1222222222223456778888888877776321 233466678888
Q ss_pred HHhcCChhhHHHHHH----------------------------hcCC---C--CchhHHHHHHHHHhCCChHHHHHHHHH
Q 043955 406 YGKCGNIDYSRNVFE----------------------------SIES---K--DVVSWTSMISSYVHNGLANEALELFYL 452 (835)
Q Consensus 406 y~k~g~~~~A~~~f~----------------------------~~~~---~--~~~~~~~li~~~~~~g~~~~Al~lf~~ 452 (835)
|.+.+.+....++.. .... + +...|..+...+.. +++++|+..|.+
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 888776333322211 1111 2 45667777777776 899999998888
Q ss_pred HhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHH
Q 043955 453 MNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWT 532 (835)
Q Consensus 453 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~ 532 (835)
.... .|+......+..+....|+++.|...+..+... .|+......+...+.+.|++++|...|+.....++..++
T Consensus 502 Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~ 577 (987)
T PRK09782 502 AEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA 577 (987)
T ss_pred HHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH
Confidence 8763 477665444555556899999999999887554 344445567788899999999999999987765444343
Q ss_pred HHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 533 SMIN---ANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 533 ~li~---~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
.... .....|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...|+... .+.| +...+..+..+
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHH
Confidence 3333 33345999999999999998 67888888899999999999999999999887 6688 48889999999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHH
Q 043955 609 LGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 686 (835)
|...|++++|++.+++. ...| ++.+|..|..++...|+.+.|+..++++++++|+++......+++.....+++.+.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999987 5667 456899999999999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 043955 687 VRMRM 691 (835)
Q Consensus 687 ~~~~m 691 (835)
-.+.-
T Consensus 733 ~~~r~ 737 (987)
T PRK09782 733 EVGRR 737 (987)
T ss_pred HHHHH
Confidence 66543
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.4e-20 Score=220.25 Aligned_cols=641 Identities=11% Similarity=-0.012 Sum_probs=425.4
Q ss_pred CCCChHhHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHH
Q 043955 4 KCGSVLDAEQLFDKVSQ--R-TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKI 80 (835)
Q Consensus 4 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i 80 (835)
..|++++|...|+...+ | +...+..+.+.|.+.|++++|+..+++..+. .|+...|..++... ++.+.|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 45999999999998875 3 4567888999999999999999999999875 56666665555333 889999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHH--------HHhcCChHHHHHHHhhcCCCCCeeeHHHH-HHHHHhCCChhHHHHHHHHH
Q 043955 81 HGLVLKCGYDSTDFIVNSLVAM--------YAKCYDFRKARQLFDRMGEKEDVVLWNSI-ISAYSASGQCLEALGLFREM 151 (835)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~~~~~~~~~n~l-i~~~~~~g~~~~A~~l~~~m 151 (835)
++.+.+.... +..++..+... |.+.+...++++ ....+..|+....... ...|.+.|++++|++++.++
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999987633 34455555554 877766666666 3333332344444444 89999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHhhc-CCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC-----CC
Q 043955 152 QRVGLVTNAYTFVAALQACED-SSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN-----KD 225 (835)
Q Consensus 152 ~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~d 225 (835)
.+.+... ..-...+-.++.. .++ +.+..++.. .+..++.+..++.+.|.+.|+.++|.+++.+++. |+
T Consensus 209 ~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 209 RQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 9986433 3334444455555 355 556555332 4446888999999999999999999999999874 33
Q ss_pred cccHHHHHHHHHcCCChh-HHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhh
Q 043955 226 SVSWNSMLTGFVQNDLYC-KAMQFFRELQGAGQKPDQV-CTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLM 303 (835)
Q Consensus 226 ~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 303 (835)
..+|--.+ .+.+... .|..-|.+ ...++.. .....+..+.+.++++.++++.. ..|.... -.+=
T Consensus 283 ~~~~~~~l---~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~r 348 (987)
T PRK09782 283 EKSWLYLL---SKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-LEER 348 (987)
T ss_pred cHHHHHHH---HhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH-HHHH
Confidence 34443332 2322221 11111111 0111111 11122444455555554443321 2222222 1111
Q ss_pred hhhh-ccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCChhHHHHHHHHhccccC
Q 043955 304 DMYA-KCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCHLKALELFRTVQLE-G-LDADVMIIGSVLMACSGLKC 377 (835)
Q Consensus 304 ~~y~-~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~~~ 377 (835)
.++. ..+...++.+.+..|-.. +....--+.-..++.|+.++|..+|+..... + ..++.....-++..+.+...
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred HhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 1222 124444444444444332 2222222333345566666666666665441 1 11222222233333333322
Q ss_pred -------------------------chHHHHHHHHHHHh---CCC--chhHHHHHHHHHHhcCChhhHHHHHHhcCCCCc
Q 043955 378 -------------------------MSQTKEIHGYIIRK---GLS--DLVILNAIVDVYGKCGNIDYSRNVFESIESKDV 427 (835)
Q Consensus 378 -------------------------~~~~~~i~~~~~~~---~~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~ 427 (835)
...+......+.+. .+. +...+..+...+.. ++.++|...|.+.....+
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P 507 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP 507 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC
Confidence 22222222222222 233 44488888888887 888889998877654333
Q ss_pred hhHHHHHHHH--HhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 428 VSWTSMISSY--VHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 428 ~~~~~li~~~--~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
..|+.+..++ .+.|++++|...|+++... .|+...+..+..++...|+++.|...+...++... .+...+..+..
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~ 584 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHA 584 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHH
Confidence 4565554454 5899999999999998653 45555566666778889999999999999988652 22333333444
Q ss_pred HHHhcCChhhHHHHhhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHH
Q 043955 506 MYARCGALDIANKVFNCVQ--TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEG 582 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a 582 (835)
...+.|++++|...|++.. .|+...|..+...+.+.|+.++|+..|++... ..|+.. .+..+..++...|+.++|
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4445699999999999877 36788999999999999999999999999998 678775 466666789999999999
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
+..|+... .+.| +...+..+..++.+.|++++|++.+++. ...|+.. +--..........+++.+...+++...
T Consensus 663 i~~l~~AL---~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 663 REMLERAH---KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999887 5678 5888999999999999999999999988 7788654 555555666777889999999999999
Q ss_pred cCCCCCCchHHHHHHHHhcCCc
Q 043955 660 LDPGNPGNYVLISNVFAASRKW 681 (835)
Q Consensus 660 l~p~~~~~~~~l~~~y~~~g~~ 681 (835)
++|... +....+.++...+++
T Consensus 740 ~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 740 FSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred cCccch-hccccchHhhhcccc
Confidence 999877 777777777766655
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=5.2e-19 Score=182.98 Aligned_cols=377 Identities=12% Similarity=0.102 Sum_probs=318.3
Q ss_pred ccccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-
Q 043955 296 LQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA- 371 (835)
Q Consensus 296 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a- 371 (835)
..+|..+.+.+-..|++++|...++.+.+. .+..|-.+..++...|+.+.|...|.+.++ +.|+.+-..+-+.-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHH
Confidence 345666777777778888888888776543 567888899999999999999999988876 46766555443333
Q ss_pred hccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---chhHHHHHHHHHhCCChHHHHH
Q 043955 372 CSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKD---VVSWTSMISSYVHNGLANEALE 448 (835)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~Al~ 448 (835)
....|.+.++...+-..++..+.-.++|+.|...+-..|++..|..-|++...-| ...|-.|...|...+.+++|+.
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 3346888999999999998888777799999999999999999999999887533 3567778889999999999999
Q ss_pred HHHHHhhcCCcCCh-hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhhHHHHhhhCCC-
Q 043955 449 LFYLMNEANVESDS-ITLVSALSAASSLSILKKGKELNGFIIRKGFNLE-GSVASSLVDMYARCGALDIANKVFNCVQT- 525 (835)
Q Consensus 449 lf~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~- 525 (835)
.|.+... ..|+. +.+..+-..+-..|.++.|..-+.+.+.. .|+ +..|+.|..++-..|++.+|.+.|.+...
T Consensus 274 ~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 274 CYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9998876 56764 45555555667889999999988888764 344 56789999999999999999999998763
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhH
Q 043955 526 --KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEH 601 (835)
Q Consensus 526 --~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~ 601 (835)
.-..+.+.|...|...|..++|..+|....+ +.|.- ..++.|.+.+-..|.+++|...++... .|+|+ .+.
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHH
Confidence 3567899999999999999999999999998 88886 568899999999999999999999877 89997 899
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 679 (835)
|+.|+..|-..|+.++|.+.+.++ .+.|.-. ..+.|.+.++..||+.+|+..++.+++++|+.+.+|-.|.-.+--..
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999988 7888654 78899999999999999999999999999999999999988888888
Q ss_pred CchH
Q 043955 680 KWKD 683 (835)
Q Consensus 680 ~~~~ 683 (835)
.|.|
T Consensus 505 dw~D 508 (966)
T KOG4626|consen 505 DWTD 508 (966)
T ss_pred cccc
Confidence 8888
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=4.8e-18 Score=175.90 Aligned_cols=356 Identities=11% Similarity=0.093 Sum_probs=299.4
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVD 404 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~ 404 (835)
-..+|..+.+.+-..|+.++|+.+++.|.+. +|+ ...|..+..++...|+.+.+.+.+...++..+....+.+.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 3457888999999999999999999999885 453 4568888888999999999999999999998877667788888
Q ss_pred HHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh-hhhHhHHHHhhcccchhh
Q 043955 405 VYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDS-ITLVSALSAASSLSILKK 480 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 480 (835)
..-..|++++|..-+.+..+ | =.+.|+-|...+...|+..+|++.|.+... +.|+- -.|..+-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 88889999999998877654 4 357899999999999999999999999987 56653 233333334444444444
Q ss_pred HHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 481 GKELNGFIIRKGFNLE-GSVASSLVDMYARCGALDIANKVFNCVQT--K-DLILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 481 a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
|...+... ....|+ ..++..|...|-..|.+|-|...|++..+ | -+..||.|..++-..|+..+|.+.|++.+.
T Consensus 271 Avs~Y~rA--l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRA--LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHH--HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 44433333 345554 56677788889999999999999998764 3 457999999999999999999999999998
Q ss_pred CCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-
Q 043955 557 ESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE- 632 (835)
Q Consensus 557 ~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~- 632 (835)
+.|+. -..+.|...+...|.+++|..+|.... .+.|. ....+.+..+|-.+|++++|+..+++. .++|+..
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 78887 468889999999999999999999766 67786 788999999999999999999999988 8999866
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.++.+...+...|+++.|...+.+++..+|.-+.++..|+.+|-.+|+..+|..-.+..-
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999998765443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=6.3e-16 Score=178.65 Aligned_cols=248 Identities=15% Similarity=0.065 Sum_probs=188.5
Q ss_pred CCChHHHHHHHHHHhhcC-CcCCh-hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHH
Q 043955 440 NGLANEALELFYLMNEAN-VESDS-ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIAN 517 (835)
Q Consensus 440 ~g~~~~Al~lf~~m~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 517 (835)
.+++++|++.|++....+ ..|+. ..+..+-..+...|+++.|...+..+++.. +.....+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777776643 23332 233344444455677777777777666542 123446677888888999999999
Q ss_pred HHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcC
Q 043955 518 KVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDY 593 (835)
Q Consensus 518 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 593 (835)
..|+... ..+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..++...|+.++|...|+....
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 9998765 34678899999999999999999999999998 56765 4566777788899999999999998873
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HH-------HHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-EV-------WCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~-------~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
..| +...|..++.++...|++++|++.+++. .+.|+. .+ ++..+..+...|+.+.|+..++++++++|+
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 457 4788999999999999999999999886 454531 11 122222234469999999999999999999
Q ss_pred CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 664 NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 664 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+...+..|+.+|...|++++|.+..+...+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999998776554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=2.8e-17 Score=180.23 Aligned_cols=290 Identities=16% Similarity=0.147 Sum_probs=196.2
Q ss_pred HHhcCChhhHHHHHHhcCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCC---hhhhHhHHHHhhcccchh
Q 043955 406 YGKCGNIDYSRNVFESIESK---DVVSWTSMISSYVHNGLANEALELFYLMNEANVESD---SITLVSALSAASSLSILK 479 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 479 (835)
+...|++++|...|.++.+. +..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34555555555555555431 223455555555556666666666655554321111 123344445555555666
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCC--------hhHHHHHHHHHHhcCChHHHHHHH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKD--------LILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~--------~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..++..+...|+.++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6665555555431 2345566777777888888888888887765321 123556777778888888888888
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043955 552 YKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QI 627 (835)
Q Consensus 552 ~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 627 (835)
+++.+. .|+. .++..+...+.+.|++++|.++|+.+... .|+ ...+..++.+|.+.|++++|.+.++++ ..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888873 4553 45666777788888899999888888743 453 466778888899999999999988887 55
Q ss_pred CCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh--cCCchHHHHHHHHHHcCCCccCCc
Q 043955 628 EPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA--SRKWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 628 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~k~~g 701 (835)
.|+...+..+...+..+|+.+.|...++++++..|+++....++...+.. .|+.+++..+.+.|.+++++..|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67766667777888889999999999999999999877544444333322 568999999999999889988887
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=5.5e-16 Score=178.38 Aligned_cols=350 Identities=11% Similarity=0.013 Sum_probs=278.4
Q ss_pred ccCChhHHHHHHHhcCCC------CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHH
Q 043955 308 KCCCVNYMGRVFYQMTAQ------DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQT 381 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 381 (835)
|..+++.-.-.|..-+++ +..-.-.++..+.+.|++++|+.+++..+.....+....+ .+..++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHH
Confidence 445555555555555432 3344556778889999999999999999887544433333 344555679999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCC
Q 043955 382 KEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANV 458 (835)
Q Consensus 382 ~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~ 458 (835)
.+.+..+++..+.+...+..+...|.+.|++++|...|++... | +...|..+...+.+.|++++|...++++...
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-- 173 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-- 173 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--
Confidence 9999999999998888899999999999999999999998764 3 5678888999999999999999999988764
Q ss_pred cCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHH
Q 043955 459 ESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMI 535 (835)
Q Consensus 459 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li 535 (835)
.|+.......+..+...|++++|...+..+.+....++......+...|.+.|+.++|...|+.... .+...+..+.
T Consensus 174 ~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 174 VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3444333333345678899999999998887765434445556667889999999999999998763 4677889999
Q ss_pred HHHHhcCChHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHH
Q 043955 536 NANGLHGRGKV----AIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLL 609 (835)
Q Consensus 536 ~~~~~~g~~~~----Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l 609 (835)
..|...|+.++ |+..|++..+ ..|+. ..+..+...+...|++++|..+++... .+.|+ ...+..+..+|
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al---~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL---ATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHH
Confidence 99999999986 8999999998 57775 467788889999999999999999887 45674 67778899999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 610 GRANHLEEAYQFVRSM-QIEPTAEVWCA-LLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 610 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
.+.|++++|.+.++++ ...|+...|.. +..++...|+.+.|...++++++.+|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999988 46676554444 45678889999999999999999999875
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=1.3e-16 Score=174.80 Aligned_cols=294 Identities=16% Similarity=0.147 Sum_probs=220.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhccccCchHHHHHHHHHHHhCCCc----hhHHHHHHHHHH
Q 043955 333 IIAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD----LVILNAIVDVYG 407 (835)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~li~~y~ 407 (835)
....+...|++++|+..|.++... .|+ ..++..+...+...|+++.|..++..+++.+..+ ..++..+...|.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 344566788999999999999875 344 3466667777778888888888888777754322 125677778888
Q ss_pred hcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHH
Q 043955 408 KCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKEL 484 (835)
Q Consensus 408 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 484 (835)
+.|++++|..+|+++.+ .+..+++.++..|.+.|++++|++.|+++...+..++...
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------- 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-------------------- 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--------------------
Confidence 88888888888887764 3556777778888888888888888888776432221110
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043955 485 NGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP 561 (835)
Q Consensus 485 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P 561 (835)
....+..+...|.+.|++++|.+.|+++.+ .+...|..++..|.+.|++++|+++|+++.+. .|
T Consensus 179 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p 245 (389)
T PRK11788 179 -----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DP 245 (389)
T ss_pred -----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Ch
Confidence 011245677788899999999999998763 34668888999999999999999999999984 45
Q ss_pred C--HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043955 562 D--HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALL 638 (835)
Q Consensus 562 d--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll 638 (835)
+ ..++..+..++...|++++|..+++.+.+ ..|+...+..++.++.+.|++++|.++++++ ...|+...+..++
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4 35678888999999999999999999884 4677677788999999999999999999876 6679998998888
Q ss_pred HHHhh---cCchhHHHHHHHHH----HhcCCCC
Q 043955 639 GACRV---HSNKELGEIVAKKL----LELDPGN 664 (835)
Q Consensus 639 ~a~~~---~~~~~~a~~~~~~~----~~l~p~~ 664 (835)
..... +|+.+.+...++++ ++.+|++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 76543 44666665555544 5566653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=1.4e-15 Score=178.96 Aligned_cols=360 Identities=9% Similarity=-0.034 Sum_probs=210.0
Q ss_pred cchhhhhhhccCChhHHHHHHHhcC---CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 043955 299 GNTLMDMYAKCCCVNYMGRVFYQMT---AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGL 375 (835)
Q Consensus 299 ~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 375 (835)
+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++++|+..+++.... .|+...+..+..++...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~ 129 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHC
Confidence 3344444444444444444444421 223444556666667777777777777777654 33332255555556667
Q ss_pred cCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCch--------hHHHHHHHHH-----hCCC
Q 043955 376 KCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVV--------SWTSMISSYV-----HNGL 442 (835)
Q Consensus 376 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~-----~~g~ 442 (835)
|+.+.|...+..+++..+.+..+...+...+.+.|..+.|.+.++.... ++. ....++..+. ..++
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 7777777777777777776666666677777777888888888877665 211 1111111111 1122
Q ss_pred h---HHHHHHHHHHhhc-CCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHH
Q 043955 443 A---NEALELFYLMNEA-NVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANK 518 (835)
Q Consensus 443 ~---~~Al~lf~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (835)
+ ++|++.++.+... ...|+... ....+ ....+. ++...|+.++|+.
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~--~~~~a---------------------------~~d~l~-~Ll~~g~~~eA~~ 258 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATA--DYQRA---------------------------RIDRLG-ALLARDRYKDVIS 258 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccch--HHHHH---------------------------HHHHHH-HHHHhhhHHHHHH
Confidence 2 5566666666542 11222111 00000 000011 2234467777777
Q ss_pred HhhhCCCCC---hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHh
Q 043955 519 VFNCVQTKD---LI-LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-----ITFLALLYACSHSGLINEGKKFLEIM 589 (835)
Q Consensus 519 ~f~~~~~~~---~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (835)
.|+.+.+.+ +. .--.+...|...|++++|+..|+++... .|.. .....+..++...|..++|.++++.+
T Consensus 259 ~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 259 EYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777666431 11 1111355666777777777777776653 2221 23444555667777777777777766
Q ss_pred hhcCC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 590 RCDYQ----------LDPW---PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 590 ~~~~~----------i~p~---~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
..... -.|+ ...+..++.++...|++++|++.++++ ...| +...|..+.......|+.+.|+..+
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 64311 1122 234556777777888888888888776 4444 4457777777777888888888888
Q ss_pred HHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 655 KKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 655 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+++++++|+++..++.++.++...|+|++|..+.+.+.+
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888777665543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=1.8e-15 Score=178.06 Aligned_cols=364 Identities=13% Similarity=0.044 Sum_probs=247.7
Q ss_pred cchhhhhhhccCChhHHHHHHHhcCC-C--CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcc
Q 043955 299 GNTLMDMYAKCCCVNYMGRVFYQMTA-Q--DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSG 374 (835)
Q Consensus 299 ~~~Li~~y~~~g~~~~A~~~f~~m~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 374 (835)
..-.+......|+.++|.+++.+... . +...+..+...+...|++++|..+|++.... .|+ ......+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 33445556667777777777777653 2 3344788888888888888888888887764 343 3344555566777
Q ss_pred ccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHH
Q 043955 375 LKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFY 451 (835)
Q Consensus 375 ~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~ 451 (835)
.++.++|...+..+++..+.+.. +..+...|...|+.++|...+++..+ | +...+..+...+...|..++|++.++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 88888888888888888777666 77788888888888888888887754 3 44455666777777788888888777
Q ss_pred HHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---hhHHHHhhhCCC---
Q 043955 452 LMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGAL---DIANKVFNCVQT--- 525 (835)
Q Consensus 452 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~---~~A~~~f~~~~~--- 525 (835)
+... .|+.... +.. . ......+. .+...+...+++ ++|...++.+.+
T Consensus 175 ~~~~---~p~~~~~---l~~-------~----~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 175 DANL---TPAEKRD---LEA-------D----AAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred hCCC---CHHHHHH---HHH-------H----HHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 6553 3431000 000 0 00000000 011111222333 566666666552
Q ss_pred CChhH-------HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC
Q 043955 526 KDLIL-------WTSMINANGLHGRGKVAIDLFYKMEAESFA-PDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP 597 (835)
Q Consensus 526 ~~~~~-------~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 597 (835)
+++.. +...+..+...|+.++|+..|+++.+.+.. |+..-. .+..++...|++++|..+|+.+.+.....+
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 22211 111234556779999999999999987532 544322 246688999999999999998874322221
Q ss_pred --ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------CH---HHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 598 --WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-------------TA---EVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 598 --~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-------------~~---~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
....+..+..++.+.|++++|.+.++++ ...| +. ..+..+.......|+.+.|+..+++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1356777888899999999999999887 3333 21 234455567888899999999999999
Q ss_pred hcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 659 ELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 659 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..|+++..+..++.+|...|+.++|.+..+...+
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876655
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=6.7e-14 Score=153.59 Aligned_cols=649 Identities=13% Similarity=0.071 Sum_probs=348.6
Q ss_pred CChHhHHHHHHhcC--CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC----CCCC--ccHHHHHHHHh-ccC----
Q 043955 6 GSVLDAEQLFDKVS--QRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGI----SVDA--FTFPCVIKACA-MLK---- 72 (835)
Q Consensus 6 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~--~~~~~ll~~~~-~~~---- 72 (835)
..+.+|-++..-+. +.....|......|...|..++.+.+++.-..... .++. ..-...+.++- ..+
T Consensus 22 ~~LPD~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek 101 (1018)
T KOG2002|consen 22 DQLPDATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEK 101 (1018)
T ss_pred hcCCChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554433 34567899999999999999999998876552110 1111 11111112211 110
Q ss_pred -------CchHHHHHHHHHHHhCCCCCcc-hHHHHHHHHHhcCC--hHHHHHHHhhc--CCCCCeeeHHHHHHHH--HhC
Q 043955 73 -------DLDCGAKIHGLVLKCGYDSTDF-IVNSLVAMYAKCYD--FRKARQLFDRM--GEKEDVVLWNSIISAY--SAS 138 (835)
Q Consensus 73 -------~~~~a~~i~~~~~~~g~~~~~~-~~~~Li~~y~~~g~--~~~A~~~f~~m--~~~~~~~~~n~li~~~--~~~ 138 (835)
....|..+|...-+.....++. ++... .|...|. ++.|...|... ..++|+.. .+..++ ...
T Consensus 102 ~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynk 177 (1018)
T KOG2002|consen 102 KKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQSPDNILA--LLGKARIAYNK 177 (1018)
T ss_pred hcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhCCcchHH--HHHHHHHHhcc
Confidence 0111222222221111111111 11111 1222233 47788888776 22223322 222332 345
Q ss_pred CChhHHHHHHHHHHHC--CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC---ChhH
Q 043955 139 GQCLEALGLFREMQRV--GLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCG---KMTE 213 (835)
Q Consensus 139 g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~ 213 (835)
|++..|+.+|...... ..+||... .+-..+.+.++.+.|+..|.++++..+ .++..+-+|--.-.... .+..
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHH
Confidence 7888888888886543 23444422 122345677777888877777776544 12222222221111222 2334
Q ss_pred HHHHHhcCC---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC--CCcchHHHHHHHHhccCChHhHHHHHHHHH
Q 043955 214 AAGVLYQLE---NKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQK--PDQVCTVNAVSASGRLGNLLNGKELHAYAI 288 (835)
Q Consensus 214 A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 288 (835)
+..++...- ..|++..+.|-.-|.-.|++..++.+...+...-.. .-...|-.+-+++-..|+++.|...+-...
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444332 247777888888888888888888888777653210 011246667777778888888888877766
Q ss_pred HhCCCccccccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCC
Q 043955 289 KQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNN----CHLKALELFRTVQLEGLDAD 361 (835)
Q Consensus 289 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~ 361 (835)
+..-...+..+--|..+|.+.|+++.+...|+.+... +..+-..+...|+..+ ..+.|..++.+..+.- +.|
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d 413 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVD 413 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-ccc
Confidence 6543222334445778888888888888888877543 3344445555565554 3455555555544432 223
Q ss_pred hhHHHHHHHHhccccCchHHHHHHHHHH----HhCCC-chhHHHHHHHHHHhcCChhhHHHHHHhcCCC-------Cch-
Q 043955 362 VMIIGSVLMACSGLKCMSQTKEIHGYII----RKGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIESK-------DVV- 428 (835)
Q Consensus 362 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~----~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-------~~~- 428 (835)
...|..+-..+.. ++.......+..+. ..+.+ ...+.|.+...+...|+++.|...|+....+ |..
T Consensus 414 ~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 3444444444333 33333344444433 22322 3447777777777777777777777655421 221
Q ss_pred ------hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhh-cccchhhHHHHHHHHHHhCCCCchhHHH
Q 043955 429 ------SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAAS-SLSILKKGKELNGFIIRKGFNLEGSVAS 501 (835)
Q Consensus 429 ------~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 501 (835)
-|| +...+-..++.+.|.+.|...... .|+-++--.=+.+.+ ..+.+.++...+..+... -..++.+++
T Consensus 493 ~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~ars 568 (1018)
T KOG2002|consen 493 STNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARS 568 (1018)
T ss_pred cchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHH
Confidence 122 233344556777777777777663 455443211111111 123444555544444432 234555666
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCC-----CChhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCC-CH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQT-----KDLILWTSMINANGL------------HGRGKVAIDLFYKMEAESFAP-DH 563 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~------------~g~~~~Al~l~~~m~~~g~~P-d~ 563 (835)
-+.+.|.+.....-|.+-|..+.. +|..+.-+|.+.|.+ .+..++|+++|.+.+. ..| |.
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~ 646 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNM 646 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence 666677776666666665544332 244444444443332 2345667777777766 344 33
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CC--CCCHHHHHHHHH
Q 043955 564 ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QI--EPTAEVWCALLG 639 (835)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~--~p~~~~~~~ll~ 639 (835)
..-+++.-.+++.|.+++|+.+|.+.++... -....|-.+..+|..+|++-.|.+.++.. .+ +-++.+...|..
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 4555666666777777777777776664422 23345666667777777777777777654 12 224556666777
Q ss_pred HHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 640 ACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
++...|....|..++.++..+.|.|+..-..+
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 77777777777777777777777776544333
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.3e-13 Score=151.50 Aligned_cols=331 Identities=12% Similarity=0.056 Sum_probs=210.6
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCh-----hH-HHHHHHHhccccCchHHHHHHHHHHHhCCCc
Q 043955 325 QDFISWTTIIAGYAQNNCHLKALELFRTVQLE---GLDADV-----MI-IGSVLMACSGLKCMSQTKEIHGYIIRKGLSD 395 (835)
Q Consensus 325 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~ 395 (835)
..+...|.+...+...|++++|...|.+.... ...+|. .| -..+-......++.+.|.+.+..+++..+.-
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 45566777888888888888888888877654 233333 22 2223334455668888888888888877654
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcC-CcCChhhhHhHHHH
Q 043955 396 LVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEAN-VESDSITLVSALSA 471 (835)
Q Consensus 396 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g-~~p~~~t~~~ll~a 471 (835)
...|--|.-|-...+...+|...+..... .|+..|+-+..-|.....+..|-+-|....+.- ..+|.++..++-..
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 44444444444445666777777776543 566777777767777777777777666554421 22444443333222
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 043955 472 ASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAI 548 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al 548 (835)
|.. .+ +.+.... -...+..+.|.+.|..+.. +|...=|.+...++..|++.+|.
T Consensus 610 ~~~------------~l---~~~~rn~--------ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 610 YIQ------------AL---HNPSRNP--------EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHH------------Hh---cccccCh--------HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH
Confidence 211 00 0000000 1134567788888887663 46777788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043955 549 DLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QI 627 (835)
Q Consensus 549 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 627 (835)
.+|.+.++... -+.-+|..+...|...|.+..|++.|+...+.+.-.-+.+...||..++-++|++.+|.+..... ..
T Consensus 667 dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 667 DIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999988643 33456888889999999999999999988777776667899999999999999999999877655 33
Q ss_pred CC-CHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 628 EP-TAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 628 ~p-~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
.| |+. ..|-.+ ...+.++.+++++| ..+-.+....+..+.|.++...|...+
T Consensus 746 ~p~~~~v~FN~a~----------v~kkla~s~lr~~k------~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 746 APSNTSVKFNLAL----------VLKKLAESILRLEK------RTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred CCccchHHhHHHH----------HHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44 222 222211 12233444444444 223344455555566666666665543
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=2.6e-15 Score=172.79 Aligned_cols=325 Identities=11% Similarity=-0.054 Sum_probs=267.9
Q ss_pred ChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHH
Q 043955 361 DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSY 437 (835)
Q Consensus 361 ~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 437 (835)
+......++..+.+.|+.+.+..++..++...+.+......++......|+.++|...|+++.. | +...|..+...+
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3344566777888999999999999999999998877677777777889999999999999864 3 556788888999
Q ss_pred HhCCChHHHHHHHHHHhhcCCcCCh-hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhH
Q 043955 438 VHNGLANEALELFYLMNEANVESDS-ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIA 516 (835)
Q Consensus 438 ~~~g~~~~Al~lf~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 516 (835)
.+.|++++|+..|++... +.|+. ..+..+...+...|+.+.|...+..+......+.. .+..+. .+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~--l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWL--AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHH-HHHHcCCHHHH
Confidence 999999999999999987 45654 45667778889999999999999888776544333 333333 47889999999
Q ss_pred HHHhhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHH----HHHHHH
Q 043955 517 NKVFNCVQTK----DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINE----GKKFLE 587 (835)
Q Consensus 517 ~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~----a~~~~~ 587 (835)
..+++.+.+. +...+..+...+...|+.++|+..|+++... .|+. ..+..+..++...|+.++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987643 3334555677888999999999999999984 5654 556778888999999986 789998
Q ss_pred HhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 588 IMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 588 ~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
... .+.| +...+..++.+|.+.|++++|...+++. ...|+ +.++..|..++...|+.+.|...++++++.+|++
T Consensus 275 ~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 877 5678 4788999999999999999999999987 55665 4578888888999999999999999999999998
Q ss_pred CCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 665 PGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 665 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+..+..++.+|...|++++|.+..+...+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 877778899999999999999987765543
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=8e-14 Score=161.22 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASS 474 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~ 474 (835)
.++.+...|...|++++|...|++..+ | +..+|..+...+...|++++|+..|++.... .|+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~------------- 397 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSE------------- 397 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-------------
Confidence 566667777778888888888877653 3 3456777777788888888888888887663 343
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
+..++..+...|...|++++|...|++..+ .+...|..+...+.+.|+.++|+..|
T Consensus 398 ---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 398 ---------------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 223345555666667777777777766542 34556667777777777777777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hh------HHHHHHHHHhhcCCHHHHHHHH
Q 043955 552 YKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PE------HYACLVDLLGRANHLEEAYQFV 622 (835)
Q Consensus 552 ~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~------~y~~lv~~l~r~g~~~eA~~~~ 622 (835)
++.+. ..|+ ...+..+..++...|++++|...|+... .+.|+ .. .+......+...|++++|.+++
T Consensus 457 ~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 457 RRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77776 3454 3456666667777777777777777655 23332 11 1222223344468888888888
Q ss_pred HhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 623 RSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 623 ~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++. .+.|+.. .|..|...+...|+.+.|...+++++++.+..... ..+..|.++.+++...++
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 775 5666544 67777788888888888888888888887754321 122345566666554444
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=1.3e-13 Score=159.02 Aligned_cols=416 Identities=12% Similarity=0.032 Sum_probs=304.2
Q ss_pred HHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHH---HHHHHhcCChHHH
Q 043955 270 ASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTI---IAGYAQNNCHLKA 346 (835)
Q Consensus 270 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A 346 (835)
...+.|+.+.|...+.++++........++ .++..+...|+.++|...+++...++...+..+ ...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 456789999999999999887533222344 888888899999999999999887654444433 4477788999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--
Q 043955 347 LELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES-- 424 (835)
Q Consensus 347 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-- 424 (835)
+++|+++.+.... +...+..+...+...+..++|.+....+.+..+... .+..++..+...++..+|.+.++++.+
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-NYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-HHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999999886422 234455667778888999999999888888766533 335556666566777669999988864
Q ss_pred C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHh-----------HHHHh-----hcccc---hhhHHHH
Q 043955 425 K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVS-----------ALSAA-----SSLSI---LKKGKEL 484 (835)
Q Consensus 425 ~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~-----------ll~a~-----~~~~~---~~~a~~i 484 (835)
| +...+..+..+..+.|-...|+++..+- |+-++-.- .+.-- ..... ++.+..-
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 3 4556677888889999999998776653 33222111 11000 01112 2233333
Q ss_pred HHHHHH-hCCCCc--hhHHHHHHH---HHHhcCChhhHHHHhhhCCCCC--hh--HHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 485 NGFIIR-KGFNLE--GSVASSLVD---MYARCGALDIANKVFNCVQTKD--LI--LWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 485 ~~~~~~-~g~~~~--~~~~~~li~---~y~k~g~~~~A~~~f~~~~~~~--~~--~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
.+.+.. -+-.|. +....+.+| ++.+.|+..++.+.|+.+.... +. +--+...+|...+++++|+.+|++.
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 333333 122232 122344444 5568899999999999998542 23 4566889999999999999999999
Q ss_pred HHCC----CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCC----------CCCC---hhHHHHHHHHHhhcCCHH
Q 043955 555 EAES----FAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQ----------LDPW---PEHYACLVDLLGRANHLE 616 (835)
Q Consensus 555 ~~~g----~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------i~p~---~~~y~~lv~~l~r~g~~~ 616 (835)
.... ..|+. .....|..|+..++++++|..+++.+.+.-. -.|+ .+.+..++..+.-.|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 7643 12333 3357889999999999999999999986211 1232 456677888899999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 617 EAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 617 eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+|++.++++ ..-| |..++..+....+..|+...|+..++.+..++|++...++.++..+-..|+|.+|.++.+...+.
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999998 4455 67799999999999999999999999999999999999999999999999999998887666553
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=2.4e-13 Score=156.78 Aligned_cols=422 Identities=10% Similarity=0.036 Sum_probs=258.4
Q ss_pred HHHhCCChhHHHHHHhcCCCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH-HH--HHHHhccCCh
Q 043955 204 MYARCGKMTEAAGVLYQLENKDSV---SWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTV-NA--VSASGRLGNL 277 (835)
Q Consensus 204 ~y~~~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~l--l~a~~~~~~~ 277 (835)
...+.|+++.|...|++..+.++. ....++..+...|+.++|+..+++.. .|+...+. .+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 356778888888888877653332 13367777777788888888877775 34333222 22 3355566777
Q ss_pred HhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHh--cCChHHHHHHHHHHHH
Q 043955 278 LNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQ--NNCHLKALELFRTVQL 355 (835)
Q Consensus 278 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 355 (835)
+.|.++++.+++.... +..++..|+..|...++.++|.+.++++...+......+..+|.. .++..+|++.++++..
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 7777777777666422 234444555566666666666666666554433322223333333 3333345555555555
Q ss_pred cCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhH--
Q 043955 356 EGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSW-- 430 (835)
Q Consensus 356 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~-- 430 (835)
. .+.+..++..++....+.|-...|.++..+-|. +...-|
T Consensus 198 ~-----------------------------------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 198 L-----------------------------------APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred h-----------------------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 3 333333444444444444444444444443331 000000
Q ss_pred HHHHHHHH---------hCCC---hHHHHHHHHHHhhc-CCcCChhh-----hHhHHHHhhcccchhhHHHHHHHHHHhC
Q 043955 431 TSMISSYV---------HNGL---ANEALELFYLMNEA-NVESDSIT-----LVSALSAASSLSILKKGKELNGFIIRKG 492 (835)
Q Consensus 431 ~~li~~~~---------~~g~---~~~Al~lf~~m~~~-g~~p~~~t-----~~~ll~a~~~~~~~~~a~~i~~~~~~~g 492 (835)
..-+.-.+ ..++ .+.|+.-++.+... +-.|...+ ..--+-+....+....+..-++.+...|
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 00000000 0111 23344444444431 11122111 1123345555666666666666666666
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----
Q 043955 493 FNLEGSVASSLVDMYARCGALDIANKVFNCVQTK---------DLILWTSMINANGLHGRGKVAIDLFYKMEAES----- 558 (835)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g----- 558 (835)
.+....+.-++.++|...+++++|..+|.++... ++.....|.-+|...+++++|..+++++.+.-
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 6666667778888888888888888888876431 22334667888888888888888888888731
Q ss_pred --------CCCCHHH-HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043955 559 --------FAPDHIT-FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI 627 (835)
Q Consensus 559 --------~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 627 (835)
..||-.. +..+...+.-.|++.+|++.++.+. ...| +......+.+++...|+..+|++.++.+ ..
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~---~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS---STAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 1223333 3445566789999999999999997 5578 7899999999999999999999999877 56
Q ss_pred CCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 628 EPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 628 ~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.|+.. +...+..+....++.+.|+.+.+.+++..|+++..-
T Consensus 480 ~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 480 APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 78654 566677777888999999999999999999998543
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=9.2e-13 Score=131.61 Aligned_cols=330 Identities=15% Similarity=0.111 Sum_probs=233.0
Q ss_pred cchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHh--ccCCchHH-HHHHHHHHHhCCCCCcchHHHH
Q 043955 23 VFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACA--MLKDLDCG-AKIHGLVLKCGYDSTDFIVNSL 99 (835)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a-~~i~~~~~~~g~~~~~~~~~~L 99 (835)
+.+=|.|+.. ..+|....+.-+|++|...|++.+...-..|++.-+ ...++.-+ .+.|-.|.+.|-.. ..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 3455666554 456788889999999999998887766666655433 22333322 22333344444222 2222
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHH
Q 043955 100 VAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLG 179 (835)
Q Consensus 100 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 179 (835)
|.|.+.+ -+|+-.|. +..+|.+||.|.++--..+.|.+++++-.....+.+..+|+.+|.+-+- ..+
T Consensus 191 -----K~G~vAd--L~~E~~PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred -----ccccHHH--HHHhhcCC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 4455544 55666565 7789999999999999999999999999998889999999999987543 344
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHh----cCC----CCCcccHHHHHHHHHcCCChhH-HHHHHH
Q 043955 180 MEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLY----QLE----NKDSVSWNSMLTGFVQNDLYCK-AMQFFR 250 (835)
Q Consensus 180 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~~~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~ 250 (835)
+.+..+|+...+.||.+++|+++...++.|+++.|++.+- +|. +|...+|..+|..+.+.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 8999999999999999999999999999999988876553 333 4788888888888888877644 444444
Q ss_pred HHHHC----CCCC----CcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhc
Q 043955 251 ELQGA----GQKP----DQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQM 322 (835)
Q Consensus 251 ~m~~~----g~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 322 (835)
+.+.. .++| |..-|.+.+..|.+..+.+.|.++++...... . |..-|..
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~---------- 394 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD---------- 394 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH----------
Confidence 44432 2333 23457788888888888888888887654321 0 0000000
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC
Q 043955 323 TAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS 394 (835)
Q Consensus 323 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 394 (835)
.....-|..+....++....+.-+.+|..|.-.-+-|+..+...+++|....+.++....++...+..|..
T Consensus 395 -~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 395 -QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 00112344566667777888888888888888888889999999999888888888888888888777743
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=2.1e-13 Score=136.18 Aligned_cols=270 Identities=17% Similarity=0.204 Sum_probs=196.0
Q ss_pred CCCChHhHHHHHHhcCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHH
Q 043955 4 KCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGL 83 (835)
Q Consensus 4 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~ 83 (835)
|.|.+.+ -+|+..| ++..++..||+++++-...+.|.+++.+......+.+..+|+.+|.+-+- ..++++..+
T Consensus 191 K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~E 263 (625)
T KOG4422|consen 191 KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAE 263 (625)
T ss_pred ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHH
Confidence 4455443 4555444 46678999999999999999999999999999889999999999987653 344889999
Q ss_pred HHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhh----c---CCCCCeeeHHHHHHHHHhCCChhH-HHHHHHHHHH--
Q 043955 84 VLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDR----M---GEKEDVVLWNSIISAYSASGQCLE-ALGLFREMQR-- 153 (835)
Q Consensus 84 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~----m---~~~~~~~~~n~li~~~~~~g~~~~-A~~l~~~m~~-- 153 (835)
|+...+.||.+++|++++..++.|+++.|++.+-+ | +..|...+|..+|..+.+.+++.+ |..++.+...
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 99999999999999999999999999888766543 3 666888899999998888888754 3444444332
Q ss_pred --CCCCC----ChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcc
Q 043955 154 --VGLVT----NAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSV 227 (835)
Q Consensus 154 --~g~~p----~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~ 227 (835)
..++| |..-|.+.+..|.+..+.+.|.++++.+.. |-.- ...|.. + ....
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t-g~N~------------~~ig~~------~-----~~~f 399 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT-GDNW------------KFIGPD------Q-----HRNF 399 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc-CCch------------hhcChH------H-----HHHH
Confidence 22333 456677888888888888888888876543 2110 000000 0 0112
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhh
Q 043955 228 SWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMD 304 (835)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 304 (835)
-|.-+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.++...+++..++..|...+.....-++.
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 24455666677777888888888888777888888888888888888888888888888887775444433333333
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=3.6e-10 Score=119.11 Aligned_cols=510 Identities=11% Similarity=0.081 Sum_probs=351.1
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC--
Q 043955 146 GLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN-- 223 (835)
Q Consensus 146 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 223 (835)
+++++..+. .|+.+. |=++.....+.+.|+.++...++.-.. + .-|.-+|++..-++.|.++++...+
T Consensus 367 RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAveccp~-s----~dLwlAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECCPQ-S----MDLWLALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhccc-h----HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445554442 344432 344555666666677777777765332 1 3355567777788888888876654
Q ss_pred -CCcccHHHHHHHHHcCCChhHHHHHHHH----HHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCcc--c
Q 043955 224 -KDSVSWNSMLTGFVQNDLYCKAMQFFRE----LQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSD--L 296 (835)
Q Consensus 224 -~d~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~ 296 (835)
.+...|.+-..-=-.+|+.+....++.+ +...|+..+..-+..=..+|-..|..-....|...++..|+... .
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 4667777666555667777777766544 45668888888888888888888888888888888877776533 2
Q ss_pred cccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccc
Q 043955 297 QIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLK 376 (835)
Q Consensus 297 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 376 (835)
.+++.-.+.+.+.+.++-|+.+| ...++- .+.+...+......--..|
T Consensus 517 ~tw~~da~~~~k~~~~~carAVy-------------------------------a~alqv-fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVY-------------------------------AHALQV-FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHH-------------------------------HHHHhh-ccchhHHHHHHHHHHHhcC
Confidence 33444444444444444444444 443332 1122223333333333344
Q ss_pred CchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 043955 377 CMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLM 453 (835)
Q Consensus 377 ~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m 453 (835)
..+....++..++..-+.....+-....-+.+.|++..|+.+++..-+ .+...|-+-+..-..+.++++|..+|.+.
T Consensus 565 t~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555555555555555555666666666677777777777666543 24456766677777777778888777777
Q ss_pred hhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-ChhH
Q 043955 454 NEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--K-DLIL 530 (835)
Q Consensus 454 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~ 530 (835)
.. ..|+...|.--+.----++..++|.++++..++. ++.-...|-.+...|-..++++.|+..|..-.+ | .+..
T Consensus 645 r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 645 RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 65 4566655555444445567777777777776664 333356778888889899999999999887654 3 4567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
|-.+...--+.|..-+|..+|++.+.. .|+ ...|...+..=.+.|+.++|........++. | +...|+--|.+
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec---p~sg~LWaEaI~l 796 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQEC---PSSGLLWAEAIWL 796 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccchhHHHHHHh
Confidence 888888888889999999999998874 454 4678888888899999999998887766552 4 46778888888
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 609 LGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
..|.++-..+.+.+++. +-|+.+.-+....+.....++.|..-++++++.+|++..++..+-..+...|.=++-.+|+
T Consensus 797 e~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred ccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999888888888776 4455566666667778889999999999999999999999999999999999999999998
Q ss_pred HHHHcCCCccCCceeEEEECC
Q 043955 689 MRMRGSGLKKTPGSSWIEIGN 709 (835)
Q Consensus 689 ~~m~~~~~~k~~g~s~i~~~~ 709 (835)
++..... +.-|..|+-+..
T Consensus 875 ~~c~~~E--P~hG~~W~avSK 893 (913)
T KOG0495|consen 875 KKCETAE--PTHGELWQAVSK 893 (913)
T ss_pred HHHhccC--CCCCcHHHHHhh
Confidence 8666532 334778876543
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=1.4e-12 Score=141.48 Aligned_cols=542 Identities=14% Similarity=0.071 Sum_probs=282.4
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 043955 44 ETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKE 123 (835)
Q Consensus 44 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 123 (835)
.++-.+...|+.|+.+||.+++..|+..|+.+.|- ++..|.-..+.-+..+++.++.+....++.+.+. . |
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-p 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-P 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C-C
Confidence 45566777788888888888888888888887777 7777777777777777788887777777766554 2 6
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhhcCC-C------hhHHHHHHHHHHH
Q 043955 124 DVVLWNSIISAYSASGQCLEALGLFRE-MQ-------RVGLVTNAYTFVAALQACEDSS-F------ETLGMEIHAATVK 188 (835)
Q Consensus 124 ~~~~~n~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-~------~~~a~~l~~~~~~ 188 (835)
-..+|+.|..+|.+.||... ++..++ |. ..|+.--..-|...+.+|-..- + ...-+.+++..++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887544 222222 21 1222211222222222221110 0 0111223333333
Q ss_pred hCCCCchhHHHH----HHHHHHh-CCChhHHHHHHhcCCC-CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc
Q 043955 189 SGQNLQVYVANA----LIAMYAR-CGKMTEAAGVLYQLEN-KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQV 262 (835)
Q Consensus 189 ~g~~~~~~~~~~----li~~y~~-~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (835)
.+....+..++. .+.-... ...+++-........+ ++..++.+.+..-.-+|+.+.|..++.+|.+.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 331111111111 1111111 1222333333333333 788888888888888899999999999999999888888
Q ss_pred hHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcC-
Q 043955 263 CTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNN- 341 (835)
Q Consensus 263 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g- 341 (835)
-|..++-+ .++......+.+-|...|+.|+..++..-+-...+.|....+.. .. +....+++-+..-+-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e----~s-q~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE----GS-QLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc----cc-chhhhhhHHHHHHHhccc
Confidence 77777765 67777788888888888999988888776666655444222211 11 11111222222222222
Q ss_pred ---------ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC---chh-HHHHHHHHHHh
Q 043955 342 ---------CHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS---DLV-ILNAIVDVYGK 408 (835)
Q Consensus 342 ---------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~---~~~-~~~~li~~y~k 408 (835)
...-.+..+++..-.|+.-....|.... -....|.-+...++-+.+...-.. +.+ .+..++.-|
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy-- 389 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY-- 389 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH--
Confidence 1222233333333334333332222211 112245555555555554433221 111 333333333
Q ss_pred cCChhhHHHHHHhcCCCCchh-HH--------------HHHHHHHhCCChHHHHHHHHHHhhcCC----cC-------Ch
Q 043955 409 CGNIDYSRNVFESIESKDVVS-WT--------------SMISSYVHNGLANEALELFYLMNEANV----ES-------DS 462 (835)
Q Consensus 409 ~g~~~~A~~~f~~~~~~~~~~-~~--------------~li~~~~~~g~~~~Al~lf~~m~~~g~----~p-------~~ 462 (835)
|.+...+.... ++ -.++-++.+-+...++.-+........ .| -.
T Consensus 390 ----------Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 390 ----------FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred ----------HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 33333221111 11 011111111122222221111111000 00 00
Q ss_pred hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCCh------hHHHHHHH
Q 043955 463 ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDL------ILWTSMIN 536 (835)
Q Consensus 463 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~------~~~~~li~ 536 (835)
-.-..++-+|.+.-+...+.+.-+.....-|. ..|..||+....-..+++|....+++..+|. .-+..+..
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 11233444454444444444333332222222 5677888888888888888888888877644 35777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCC
Q 043955 537 ANGLHGRGKVAIDLFYKMEAESF-APD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANH 614 (835)
Q Consensus 537 ~~~~~g~~~~Al~l~~~m~~~g~-~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 614 (835)
.+.+++...++..++++|.+.-. .|+ ..++--++..-...|..+.-.+.++-+. .+|+.-+ .-++....|.++
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd 611 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDD 611 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccc
Confidence 88888888888888888876422 232 3456667777777787777777776554 2243321 223444555666
Q ss_pred HHHHHHHHHh
Q 043955 615 LEEAYQFVRS 624 (835)
Q Consensus 615 ~~eA~~~~~~ 624 (835)
...|.+..+.
T Consensus 612 ~s~a~ea~e~ 621 (1088)
T KOG4318|consen 612 QSAAQEAPEP 621 (1088)
T ss_pred hhhhhhcchH
Confidence 6666555443
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=1.1e-11 Score=134.62 Aligned_cols=276 Identities=14% Similarity=0.122 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCCCCc------hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CC-hhhhHhH
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIESKDV------VSWTSMISSYVHNGLANEALELFYLMNEANVE-SD-SITLVSA 468 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~-~~t~~~l 468 (835)
..|..||+........++|..+.+++..+|. .-++.+.+...+.+...++..++.+|.+.-.. |+ ..++--+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 3788999999999999999999999987643 45778888899999999999999999873222 21 3455567
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC------CChhHHHHHHHHHHhcC
Q 043955 469 LSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT------KDLILWTSMINANGLHG 542 (835)
Q Consensus 469 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g 542 (835)
+..-+..|..+.-+++++.+...|+..+ .-|+....+.++...|+++++.... ++...|-.++.-- ...
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke-~td 646 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKE-TTD 646 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhh-ccc
Confidence 7777888999999999999988887653 3344445577888888888765432 1223333332210 011
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHH----------h-hhcCCCCC---------ChhHH
Q 043955 543 RGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEI----------M-RCDYQLDP---------WPEHY 602 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~----------m-~~~~~i~p---------~~~~y 602 (835)
..+.+..+-.... -+.+.|.+.++.++.+. + .....+.| +..+.
T Consensus 647 ~~qk~mDls~~iq----------------~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~ 710 (1088)
T KOG4318|consen 647 SPQKTMDLSIPIQ----------------KFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKN 710 (1088)
T ss_pred cHHHHHhhcchhH----------------HHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHH
Confidence 2222222211111 12233333333332220 0 00001111 01122
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---chhHHHHHHHHHHhcCCCCCCc---hHHHHHHHH
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHS---NKELGEIVAKKLLELDPGNPGN---YVLISNVFA 676 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~ 676 (835)
.-+...|-++|+++.|..++.++++-|......-|++..+.+. ++..+...-+++-++.|..+.+ |.-.+ ..+
T Consensus 711 dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a-~~a 789 (1088)
T KOG4318|consen 711 DRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYA-FFA 789 (1088)
T ss_pred HHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhH-HHH
Confidence 3367788999999999999999999999998888888887764 4556666677777777654432 22222 344
Q ss_pred hcCCch-HHHHHHHHHHcC
Q 043955 677 ASRKWK-DVEQVRMRMRGS 694 (835)
Q Consensus 677 ~~g~~~-~a~~~~~~m~~~ 694 (835)
.+++.. -|.+.....++.
T Consensus 790 ~q~~qkkaAkk~f~r~eeq 808 (1088)
T KOG4318|consen 790 TQTEQKKAAKKCFERLEEQ 808 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHc
Confidence 455555 455666555554
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=5.6e-10 Score=122.62 Aligned_cols=572 Identities=11% Similarity=0.059 Sum_probs=329.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 043955 72 KDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQCLEALGLFR 149 (835)
Q Consensus 72 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 149 (835)
|+++.|..++.++++... .+...|-.|-..|-..|+.+++...+--. -.+.|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 666666666666666542 23445666666666666666666555433 111344556666666666666666666666
Q ss_pred HHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhCCChhHHHHHHhcCCC--
Q 043955 150 EMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANA----LIAMYARCGKMTEAAGVLYQLEN-- 223 (835)
Q Consensus 150 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~~-- 223 (835)
+..+.. +++...+--=...|-+.|+...|..-+.++.......|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 666542 22222222223345555666666666666655544333222222 23445555666777777665543
Q ss_pred C---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHH--HHhCCCccccc
Q 043955 224 K---DSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYA--IKQGFVSDLQI 298 (835)
Q Consensus 224 ~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~--~~~g~~~~~~~ 298 (835)
. +...+|.++..|.+...++.|......+......+|..-+-+- +....-.... +..++.++..+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----------~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----------ERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----------hhccccccccccCCCCCCccchh
Confidence 1 3456778888888888888888888777764344443221000 0000000000 01122333333
Q ss_pred -cchhhhhhhccCChhHHHHHHHhcCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 043955 299 -GNTLMDMYAKCCCVNYMGRVFYQMTA----QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACS 373 (835)
Q Consensus 299 -~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 373 (835)
...+--...+.+...++..-|-.... .++..|.-+..+|.+.|.+.+|+.+|..+......-+.+.|..+-..+-
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 11111122233333333333322211 2455677888899999999999999999988766666777888888888
Q ss_pred cccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCch-----hH-------HHHHHHHHhCC
Q 043955 374 GLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVV-----SW-------TSMISSYVHNG 441 (835)
Q Consensus 374 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-----~~-------~~li~~~~~~g 441 (835)
..+..+.|.+.+..++...+.+..+..+|...|-+.|+.++|.+.+..+..||.. .| --..+.+.+.|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999988889999999999999999999999998766622 12 11234567788
Q ss_pred ChHHHHHHHHHHhhcCCc-----CChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhH
Q 043955 442 LANEALELFYLMNEANVE-----SDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIA 516 (835)
Q Consensus 442 ~~~~Al~lf~~m~~~g~~-----p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 516 (835)
+.++=+..-.+|+....+ |+..-= ..++.++ .+..........++.|-.+.++-...
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~----r~~~~~~--------------~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKK----RRRAIAG--------------TTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHH----HHHhhcc--------------ccccccchhHHHHHHHHhccCchHHh
Confidence 887766666666542211 110000 0011000 00111112222233333333321111
Q ss_pred HHHh--------hhCCCCChhHH----HHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHhcccCcH
Q 043955 517 NKVF--------NCVQTKDLILW----TSMINANGLHGRGKVAIDLFYKMEAESF--APDHI--TF-LALLYACSHSGLI 579 (835)
Q Consensus 517 ~~~f--------~~~~~~~~~~~----~~li~~~~~~g~~~~Al~l~~~m~~~g~--~Pd~~--t~-~~ll~a~~~~g~~ 579 (835)
..-. .....-...-| .-+|..+++.|+.++|+.+...+....+ .++.. ++ ...+.++...+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 1111 11111122223 4567789999999999999999887532 22221 22 2345567789999
Q ss_pred HHHHHHHHHhhhcCCC--CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHhhcCchhHH
Q 043955 580 NEGKKFLEIMRCDYQL--DP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-----EVWCALLGACRVHSNKELG 650 (835)
Q Consensus 580 ~~a~~~~~~m~~~~~i--~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-----~~~~~ll~a~~~~~~~~~a 650 (835)
.+|..+++.|...++. .| ....|+|....+.+.|+---=..++... ...|+. .+++..+-. .+.+.-|
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~---~~s~~~A 759 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFV---NASFKHA 759 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhh---ccchHHH
Confidence 9999999999876443 34 3567887777777777655555555554 222322 233433333 3445668
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 651 EIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...+-+++...|++|-.-.+|+-.|-
T Consensus 760 l~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 760 LQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 88999999999999988877776554
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=5.4e-14 Score=145.92 Aligned_cols=211 Identities=17% Similarity=0.130 Sum_probs=112.3
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 476 SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ--TKDLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
++.+.+.+.+..+...+-. ++..+..++.. ...+++++|.+++...- .++...|..++..+...|+++++.+++++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444444433333222 33345556665 57788888888887654 35677888899999999999999999999
Q ss_pred HHHCCC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCC
Q 043955 554 MEAESF-APDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--QIEP 629 (835)
Q Consensus 554 m~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p 629 (835)
.....- +++...|..+...+.+.|+.++|.+.++... ...|+ ......++.++...|+.++|.+.++.. ..++
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al---~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL---ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 876432 3455567777778889999999999999887 55784 788888999999999999988888766 2244
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
|+..|..+..++...|+.+.|...++++++.+|+|+.....++.++...|+.++|.++|+..
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66789999999999999999999999999999999999999999999999999999998754
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=6.7e-08 Score=102.46 Aligned_cols=491 Identities=13% Similarity=0.102 Sum_probs=292.3
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC--CCCCeeeHHHHHHHHHhCCChhHH
Q 043955 67 ACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMG--EKEDVVLWNSIISAYSASGQCLEA 144 (835)
Q Consensus 67 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~n~li~~~~~~g~~~~A 144 (835)
+.....+.+.|+.++...++.- +.+. -|.-+|++...++.|.+++++.. .+.+...|.+-...=-.+|+.+..
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 3334445555666665555432 1122 23445566666777888877662 223566676666666677777777
Q ss_pred HHHHHH----HHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCChhHHHHHH
Q 043955 145 LGLFRE----MQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQ--VYVANALIAMYARCGKMTEAAGVL 218 (835)
Q Consensus 145 ~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f 218 (835)
..++.+ +...|+..|...+..=..+|-..|..-.+..|...++.-|++.. -.+|+.--+.|.+.+.++-|+.+|
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 766654 34567777777777767777777777777777777777776542 345666666777777777777777
Q ss_pred hcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHhHHHHHHHHHHhCCCc
Q 043955 219 YQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQ-VCTVNAVSASGRLGNLLNGKELHAYAIKQGFVS 294 (835)
Q Consensus 219 ~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 294 (835)
....+ .+...|......--..|..++-..+|++.... .|.. ..+....+-.-..|+...++.++..+.+...
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-- 615 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-- 615 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--
Confidence 65543 24455666555555566666666666666553 2221 1222222222333444444444444433321
Q ss_pred cccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 043955 295 DLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSG 374 (835)
Q Consensus 295 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 374 (835)
.+...|-+-+..-..+..++.|..+|.+.... .|+...|..-...---
T Consensus 616 ------------------------------nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 616 ------------------------------NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred ------------------------------CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 13345666666666666677777776665542 3444333333222223
Q ss_pred ccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHh
Q 043955 375 LKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMN 454 (835)
Q Consensus 375 ~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~ 454 (835)
.++.+++.++++..++.-+.-.-+ |-.+.+.+-+.++.+.|.+.|..-.
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl-------------------------------~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKL-------------------------------WLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHH-------------------------------HHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444433322223 3334444555555555555554333
Q ss_pred hcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHH
Q 043955 455 EANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILW 531 (835)
Q Consensus 455 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~ 531 (835)
+ .-|+.. ..|-.|.+.=-|.|.+-.|+.+|++.. .+|...|
T Consensus 713 k--~cP~~i----------------------------------pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 713 K--KCPNSI----------------------------------PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred c--cCCCCc----------------------------------hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence 2 223322 234444555556677777777777654 2366788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh
Q 043955 532 TSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR 611 (835)
Q Consensus 532 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r 611 (835)
-..|..-.++|+.+.|..+..+.+++ .+.+...|.--|.-.-+.++-......+. ..+-|+...-.+..++-.
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHH
Confidence 88888888888888888888887774 34444566666655555555333333332 223345556667778888
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 612 ANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 612 ~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
..++++|.+.|.+. ...||.. +|.-+..-...||+-+.-..++.+...-+|.....|...|
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 88999999998887 7778765 8988988899999999999999999999998876665554
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=1.1e-10 Score=127.92 Aligned_cols=333 Identities=14% Similarity=0.113 Sum_probs=217.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHH
Q 043955 340 NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVF 419 (835)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f 419 (835)
.|+.++|..++.+..+.. +-+...|..+-..+...|+.+.+...+-.+.-..+.+...|..+.+...+.|.++.|+-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 377788888877777653 3345567777777777777777776666666666666667777777777777777777777
Q ss_pred HhcCCCCchhHHH---HHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCc
Q 043955 420 ESIESKDVVSWTS---MISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLE 496 (835)
Q Consensus 420 ~~~~~~~~~~~~~---li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 496 (835)
.+..+.++.-|-. -+..|-+.|+...|+.-|.++..... |... .++++.+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~------------------er~~d~i-------- 283 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDI------------------ERIEDLI-------- 283 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhH------------------HHHHHHH--------
Confidence 7766544433433 34566777777777777777766321 1111 0111100
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-----
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQT--K---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITF----- 566 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~----- 566 (835)
--.+..|-..++-+.|.+.++.... . +...+|.++..|.....++.|+.....+......||..-|
T Consensus 284 ----~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 284 ----RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 0112333334444555555544332 1 2334566666666666777777766666652222222111
Q ss_pred -----------------H---HHHHHhcccCcHHHHHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 567 -----------------L---ALLYACSHSGLINEGKKFLEIMRCDYQLDP--WPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 567 -----------------~---~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
. .-+..|...=+..+..+.+......+...| +++.|.-++++|-+.|++.+|+.++..
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 0 122333322222233333333333445445 588999999999999999999999998
Q ss_pred C---CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCc
Q 043955 625 M---QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 625 m---~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 701 (835)
. |-.-+..+|--+...+...|..+.|...+++++.++|++..+-+.|+.+|...|+.++|.++...|-.-+-++.++
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 8 3233567999999999999999999999999999999999999999999999999999999998777556566677
Q ss_pred eeE
Q 043955 702 SSW 704 (835)
Q Consensus 702 ~s~ 704 (835)
|+|
T Consensus 520 ~a~ 522 (895)
T KOG2076|consen 520 CAW 522 (895)
T ss_pred ccc
Confidence 776
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=6.8e-11 Score=118.96 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCC-hhhhHhHHHHhhcccchhhH
Q 043955 406 YGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESD-SITLVSALSAASSLSILKKG 481 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 481 (835)
|-+.|++++|...|-.+.. .+....--+.+.|-...++.+|++++.+... +.|+ +..++-+-..+-+.|+-.+|
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhh
Confidence 4456666666666654432 3333344445556666666666666654433 3333 22233333333344444444
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhC--CCCChhHHHHHHHHH-HhcCChHHHHHHHHHHH
Q 043955 482 KELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCV--QTKDLILWTSMINAN-GLHGRGKVAIDLFYKME 555 (835)
Q Consensus 482 ~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~--~~~~~~~~~~li~~~-~~~g~~~~Al~l~~~m~ 555 (835)
.+.|-.--+ -|+.+..+...|...|....-.+.|..+|++. .+|+.+-|..||..| .+.|++++|+++|++.-
T Consensus 612 fq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 612 FQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 443322211 12333444444444444444444444444432 234444444444332 23344444444444443
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2.6e-11 Score=128.98 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=127.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHH
Q 043955 525 TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHY 602 (835)
Q Consensus 525 ~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y 602 (835)
+..+.+|-++...|.-.++.+.|++.|++..+ +.| ...+|+.+..=......+|.|..+|+... ++.|+ -..|
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rhYnAw 492 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRHYNAW 492 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchhhHHH
Confidence 34677888888888888888888888888887 677 45677777666677778888888888654 44442 2333
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
--++-.|.+.++++.|+-.|+++ .+.|... +...+.......|+.|.|...+++++-+||.|+-.-+..+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 34566788888888888888887 7888544 555566667777888888888888888888888888888888888888
Q ss_pred chHHHHHHHHHHc
Q 043955 681 WKDVEQVRMRMRG 693 (835)
Q Consensus 681 ~~~a~~~~~~m~~ 693 (835)
+++|..+.+.+++
T Consensus 573 ~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 573 YVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888888886
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.1e-10 Score=115.54 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=150.4
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
.|+++.|.+.+...+.+.-.-....+| +.-.|-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 456666666666555443222222222 2234667899999999887654 456777777888888888999999998
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043955 552 YKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIE 628 (835)
Q Consensus 552 ~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 628 (835)
-+... +-|+. ..+.-|...|-+.|+-.+|.+++- ..|..-| +.++..-+..-|....-+++|+..+++. -+.
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~y---dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHY---DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhh---hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 77765 66655 456666677888999988888765 3455667 6888888888888888899999999988 678
Q ss_pred CCHHHHHHHHHHH-hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCc
Q 043955 629 PTAEVWCALLGAC-RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKW 681 (835)
Q Consensus 629 p~~~~~~~ll~a~-~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 681 (835)
|+.+-|.-++..| |..||...|...++.+-..-|+|......|..+....|.-
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999888766 6779999999999999999999988888888877766643
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=5e-11 Score=126.82 Aligned_cols=151 Identities=10% Similarity=0.025 Sum_probs=73.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCH
Q 043955 538 NGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHL 615 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~ 615 (835)
+.....++.|...|+..+. +.|.+ -.|.++...+.+.+..+.|.-.|+... .|.| +.....|++..+-+.|+.
T Consensus 465 ~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred hhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhh
Confidence 3333444444444444443 34433 234455555555555555555555443 4555 344444555555555555
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 616 EEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+|+++++++ -++| |+..--.-.......++.+.|...+|++.++-|+++..|.+|+.+|-..|+.+.|..-...|-+
T Consensus 540 d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 540 DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5555555555 2333 1111111111222334555555555555555555555555555555555555555555544443
No 41
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=7.7e-08 Score=106.28 Aligned_cols=660 Identities=14% Similarity=0.171 Sum_probs=364.4
Q ss_pred CCChHhHHHHHHhcCC---CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHH
Q 043955 5 CGSVLDAEQLFDKVSQ---RTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIH 81 (835)
Q Consensus 5 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~ 81 (835)
.|++++|-++-...|+ +++.+-|.+=+.=...|.+..-+..|..+...| +.|..--.-+.+--...++.+...+.+
T Consensus 373 qG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl 451 (1666)
T KOG0985|consen 373 QGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWL 451 (1666)
T ss_pred CccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 4677777777766665 466666666655566777777777887777776 444432222333223333333322222
Q ss_pred HH-----HHHhC--CCC-C----cc------hHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhH
Q 043955 82 GL-----VLKCG--YDS-T----DF------IVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLE 143 (835)
Q Consensus 82 ~~-----~~~~g--~~~-~----~~------~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~ 143 (835)
.+ -.+.| +.| | .. +-+..+..|+.+|.++++.-...+.+..|| |-.+|+...+ -.++.
T Consensus 452 ~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~ 527 (1666)
T KOG0985|consen 452 KEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQ 527 (1666)
T ss_pred hhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhH
Confidence 11 01112 111 1 01 123445566666666666666666655555 4456666666 56788
Q ss_pred HHHHHHHHHHCC-CCCChhhH--------------HHHHHHhhcCCChhHH---HHHHHHHHHhCCC----------Cch
Q 043955 144 ALGLFREMQRVG-LVTNAYTF--------------VAALQACEDSSFETLG---MEIHAATVKSGQN----------LQV 195 (835)
Q Consensus 144 A~~l~~~m~~~g-~~p~~~t~--------------~~ll~a~~~~~~~~~a---~~l~~~~~~~g~~----------~~~ 195 (835)
+.++...|.+.. ...|.... +.+|.++ +....+.+ -++++.-...+++ ...
T Consensus 528 ~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaL-K~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtH 606 (1666)
T KOG0985|consen 528 ALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDAL-KLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTH 606 (1666)
T ss_pred HHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHh-cCCChhhhhHHHHHHHHHhccchHHHHHHHhcccccc
Confidence 888777776632 22222211 1122222 11222221 2233333332221 112
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHhcCCC-CCcccHHHH-----HHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043955 196 YVANALIAMYARCGKMTEAAGVLYQLEN-KDSVSWNSM-----LTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVS 269 (835)
Q Consensus 196 ~~~~~li~~y~~~g~~~~A~~~f~~~~~-~d~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 269 (835)
+-+..+.+.|.+.|-...|.+.+..+.. +-.+..+.+ +..|.-.-.++.+++.++.|...+++-|..+...+..
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2245667788899999999988877654 111111111 2344445568889999999998888888776666655
Q ss_pred HHhccCChHhHHHHHHHHHH-----------hCCCccccccchhhhhhhccCChhHHHHHHHhcCC--------------
Q 043955 270 ASGRLGNLLNGKELHAYAIK-----------QGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTA-------------- 324 (835)
Q Consensus 270 a~~~~~~~~~a~~i~~~~~~-----------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------------- 324 (835)
-|...-..+.-.++|+.... .++..|+.+.-..|.+-++.|++.+.+++-++-.-
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 55444333344444443322 13556777777888899999988888887654321
Q ss_pred -C----------------CcccH------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH-------------H
Q 043955 325 -Q----------------DFISW------TTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGS-------------V 368 (835)
Q Consensus 325 -~----------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------------l 368 (835)
. |.+.| ...|..|++.=++...-.+...++. +..+....-. +
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD--~dC~E~~ik~Li~~v~gq~~~deL 844 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD--VDCSEDFIKNLILSVRGQFPVDEL 844 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc--CCCcHHHHHHHHHHHhccCChHHH
Confidence 0 11111 1233444443332222222221111 1111111111 2
Q ss_pred HHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChh-----------------------------------
Q 043955 369 LMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNID----------------------------------- 413 (835)
Q Consensus 369 l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~----------------------------------- 413 (835)
..-+.+.+++..-...++..+..|..+..++|+|...|..+++-.
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 222344455555556666777777777777777777775433211
Q ss_pred -----------------------------hHHHHH-----------Hhc-----C-CCCchhHHHHHHHHHhCCChHHHH
Q 043955 414 -----------------------------YSRNVF-----------ESI-----E-SKDVVSWTSMISSYVHNGLANEAL 447 (835)
Q Consensus 414 -----------------------------~A~~~f-----------~~~-----~-~~~~~~~~~li~~~~~~g~~~~Al 447 (835)
--.+++ ++. + ..|+..-+.-+.++...+.+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 101111 100 0 013333444556667777777777
Q ss_pred HHHHHHhhcCCcCChhhhHhHHHHhhcccchh-hHHHHHHHHHHh--------------------------CCCCchhHH
Q 043955 448 ELFYLMNEANVESDSITLVSALSAASSLSILK-KGKELNGFIIRK--------------------------GFNLEGSVA 500 (835)
Q Consensus 448 ~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~~i~~~~~~~--------------------------g~~~~~~~~ 500 (835)
+++++..- .|+.++=+.-|....-+...+ .-..+.+++.+. .++.+....
T Consensus 1005 ELLEKIvL---~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1005 ELLEKIVL---DNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHhc---CCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 77777653 222222111111100000000 001112222221 112222222
Q ss_pred HHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH
Q 043955 501 SSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLIN 580 (835)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~ 580 (835)
+.||+ .-|+++.|.+.-++.. .+..|+.+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 22222 2344444444444433 3457999999999999999999988543 24567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhc
Q 043955 581 EGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 660 (835)
+-.+++...+++ .-+|.++ +.++-+|++.+++.|-++|+. -|+..-......-|...|..+.|+..+.
T Consensus 1151 dLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~----- 1218 (1666)
T KOG0985|consen 1151 DLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS----- 1218 (1666)
T ss_pred HHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH-----
Confidence 999999877655 5567655 468999999999999999985 4777777888899999999999888876
Q ss_pred CCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCc
Q 043955 661 DPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 661 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 701 (835)
+...|..|+..+...|.+..|...-++......-|+-+
T Consensus 1219 ---~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1219 ---NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 45678888998999999988876544444333333333
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=2.3e-10 Score=124.37 Aligned_cols=254 Identities=13% Similarity=0.026 Sum_probs=161.5
Q ss_pred ccccCchHHHHHHHHHHHhCCCchh-HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHH
Q 043955 373 SGLKCMSQTKEIHGYIIRKGLSDLV-ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALE 448 (835)
Q Consensus 373 ~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~ 448 (835)
...|+.+.+.+.+..+.+..+++.. ........+...|+.+.|...++.+.+ .++.....+...|.+.|++++|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4445555555555555444333322 222335667777788888777777654 245556677777888888888888
Q ss_pred HHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---
Q 043955 449 LFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--- 525 (835)
Q Consensus 449 lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--- 525 (835)
++..+.+.+..++. ....+- ...+..++....+..+.+...++++.++.
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 88888776543221 110000 00111222222233344555556665542
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHH
Q 043955 526 KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYAC 604 (835)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~ 604 (835)
+++..+..+..++...|+.++|.+++++..+ ..||... .++.+....|+.+++.+..+...+. .| +++.+.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~ 333 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWST 333 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHH
Confidence 4667777788888888888888888888877 3444421 1233333457888888888777744 46 4666778
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELD 661 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 661 (835)
++.++.+.|++++|.+.++.+ ...|+...+..|..++...|+.+.|...+++.+.+-
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888888888888888877 677888877777788888888888888888887764
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=8.3e-10 Score=120.72 Aligned_cols=290 Identities=11% Similarity=0.006 Sum_probs=180.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHhccccCchHHHHHHHHHHHhCCCchh-HHHHHHHHHHhcCChhhH
Q 043955 338 AQNNCHLKALELFRTVQLEGLDADVMI-IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLV-ILNAIVDVYGKCGNIDYS 415 (835)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A 415 (835)
...|+++.|.+.+.+..+. .|++.. +.....+....|+.+.+.+.+....+..+.+.. +.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578889998888776554 344333 233344566667888888877777766554432 555557777777777777
Q ss_pred HHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhC
Q 043955 416 RNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKG 492 (835)
Q Consensus 416 ~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 492 (835)
...++.+.+ | +...+..+...|.+.|++++|.+++..+.+.++.+.. .+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 777777654 2 4455666777777777777777777777776532221 1100000
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---
Q 043955 493 FNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITF--- 566 (835)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~--- 566 (835)
..+..+++.-......+...+.++..+. +++..+..++..+...|+.++|++++++..+ ..||....
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhH
Confidence 0011111111122233444555555553 4778888888999999999999999999888 45665421
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHhh
Q 043955 567 LALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRS--M-QIEPTAEVWCALLGACRV 643 (835)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~a~~~ 643 (835)
..........++.+.+.+.++...+...-+|+.....+++.++.+.|++++|.+.++. + ...||+.++..|...+..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111222334667777777776664433333325566777777788888888887773 3 556777776677777777
Q ss_pred cCchhHHHHHHHHHHh
Q 043955 644 HSNKELGEIVAKKLLE 659 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~ 659 (835)
.|+.+.|...+++.+.
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776644
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.9e-10 Score=114.51 Aligned_cols=208 Identities=19% Similarity=0.175 Sum_probs=171.4
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHH
Q 043955 476 SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFY 552 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~ 552 (835)
|+.-.+.+-++.+++....++. .|--+..+|....+.++-...|+... ..|..+|..-...+.-.+++++|+.=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777776544332 25556677999999999999998765 3477788888888888899999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043955 553 KMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP 629 (835)
Q Consensus 553 ~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 629 (835)
+.+. +.|+. ..|.-+-.+..+.+.+++....|+..++++ | .++.|+-...+|...+++++|.+.++.. .++|
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 9998 78876 468888888889999999999999998765 6 4889999999999999999999999876 5666
Q ss_pred C---------HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHH
Q 043955 630 T---------AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 630 ~---------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
+ +.+-.+++-.-++ +|+..|+...++++++||....+|..|+.+-...|+.++|.++.+.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5 3344555544333 8999999999999999999999999999999999999999998764
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6e-09 Score=106.12 Aligned_cols=334 Identities=14% Similarity=0.138 Sum_probs=227.6
Q ss_pred hhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH--HHHHHHhccccCchHHH
Q 043955 305 MYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMII--GSVLMACSGLKCMSQTK 382 (835)
Q Consensus 305 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~~~ 382 (835)
.+-+.|....|+..|.....+-+..|.+-+...--..+.+.+..+- .|...|...+ -.+..++......+.+.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~~a~~el~q~~e~~ 247 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLKKAYQELHQHEEAL 247 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777776666655555555444332222222222211 1112111111 22334555566677777
Q ss_pred HHHHHHHHhCCCchh-HHHHHHHHHHhcCChhhHHHHHHhcCCC------CchhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 043955 383 EIHGYIIRKGLSDLV-ILNAIVDVYGKCGNIDYSRNVFESIESK------DVVSWTSMISSYVHNGLANEALELFYLMNE 455 (835)
Q Consensus 383 ~i~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~Al~lf~~m~~ 455 (835)
+-.......|++... +-+.....+-...++|.|..+|+++... |..+|+-.+ |+++.+.. +..+.+-..
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk--Ls~LA~~v~ 323 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK--LSYLAQNVS 323 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH--HHHHHHHHH
Confidence 777778888887555 5555566666778889999999888754 445555443 44444332 222222211
Q ss_pred --cCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhH
Q 043955 456 --ANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLIL 530 (835)
Q Consensus 456 --~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~ 530 (835)
...+|. +...+.+.|+-.++-+.|...|++..+ +-...
T Consensus 324 ~idKyR~E-------------------------------------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a 366 (559)
T KOG1155|consen 324 NIDKYRPE-------------------------------------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA 366 (559)
T ss_pred HhccCCcc-------------------------------------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH
Confidence 123332 223345566677778888888887664 34568
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
|+-|..-|....+...|++-+++.++ +.| |...|.++..+|.-.++..-|+-+|+... .+.| |...|..|+++
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGEC 441 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHH
Confidence 99999999999999999999999988 666 55789999999999999999999998776 7788 68899999999
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHh-------cCCCCCCchHHHHHHHHhcC
Q 043955 609 LGRANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE-------LDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g 679 (835)
|.+-++++||++.+++. .-+.+..++..|...+...++.+.|...+++-++ .+|+-..+-.-|++-+.+.+
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~ 521 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMK 521 (559)
T ss_pred HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhc
Confidence 99999999999999988 2233446788888999999999999999999887 44544555677999999999
Q ss_pred CchHHHHHHH
Q 043955 680 KWKDVEQVRM 689 (835)
Q Consensus 680 ~~~~a~~~~~ 689 (835)
+|++|...-.
T Consensus 522 ~~~~As~Ya~ 531 (559)
T KOG1155|consen 522 DFDEASYYAT 531 (559)
T ss_pred chHHHHHHHH
Confidence 9999987653
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=7.9e-08 Score=98.17 Aligned_cols=479 Identities=12% Similarity=0.076 Sum_probs=343.6
Q ss_pred hCCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHhHHH
Q 043955 207 RCGKMTEAAGVLYQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQV-CTVNAVSASGRLGNLLNGKE 282 (835)
Q Consensus 207 ~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~ 282 (835)
..+++..|+.+|++... ++...|--.+..=.++.....|..++++.... .|-.. .+---+..=..+|++..+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 35667788888887765 56777888888888888888888888887763 33322 22223333455788999999
Q ss_pred HHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhc--CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc-C-C
Q 043955 283 LHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQM--TAQDFISWTTIIAGYAQNNCHLKALELFRTVQLE-G-L 358 (835)
Q Consensus 283 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~ 358 (835)
+|..-.+. .|+...|++.|++=.+-..++.|+.++++. ..|++.+|--...-=.++|+...|..+|...... | -
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99887764 789999999999999999999999999885 4678888888888888899998888888877653 1 1
Q ss_pred CCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCc--hhHHHHHHHHHHhcCChhhHHHH--------HHhcCCC---
Q 043955 359 DADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD--LVILNAIVDVYGKCGNIDYSRNV--------FESIESK--- 425 (835)
Q Consensus 359 ~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A~~~--------f~~~~~~--- 425 (835)
.-+...|.++..--.+....+.++-++...+..-+.+ ..++..+...--+-|+....... ++.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1122233333333345677889999999999988865 33777777777777775443332 2333333
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh-------hhhHhHHHHh---hcccchhhHHHHHHHHHHhCCCC
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDS-------ITLVSALSAA---SSLSILKKGKELNGFIIRKGFNL 495 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~g~~~ 495 (835)
|-.+|--.+..-...|+.+...++|.+.... ++|-. ..|.-+=-+| ..+.+.+.+++++...++ -++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 5567777777777889999999999999874 55532 1222222222 346788999999999888 3444
Q ss_pred chhHHHHHHHHHH----hcCChhhHHHHhhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 043955 496 EGSVASSLVDMYA----RCGALDIANKVFNCVQ--TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLA 568 (835)
Q Consensus 496 ~~~~~~~li~~y~----k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ 568 (835)
..+++.-+=-||+ ++-++..|++++.... .|-.-++...|..-.+.++++....+|++.++ ..|.. .+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHH
Confidence 5666666655665 6789999999998765 46667888888888999999999999999998 56654 67776
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHh-----
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACR----- 642 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~----- 642 (835)
...-=...|+.|.|+.+|+-......++...-.+-..+|.=...|.++.|..++++. .-.+...+|-++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 666667789999999999988765444444556788889889999999999999988 44455568988773322
Q ss_pred hcC-----------chhHHHHHHHHHHhc----CCCCCCc--hHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 643 VHS-----------NKELGEIVAKKLLEL----DPGNPGN--YVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 643 ~~~-----------~~~~a~~~~~~~~~l----~p~~~~~--~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..+ ++..|..+++++... +|..... .-..-|+=...|.-++...|.++|.+
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 334 567788888877643 4432222 22334566677888888888887743
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.30 E-value=7.5e-10 Score=121.05 Aligned_cols=282 Identities=9% Similarity=-0.006 Sum_probs=200.3
Q ss_pred hccCChhHHHHHHHhcCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHhccccCchHH
Q 043955 307 AKCCCVNYMGRVFYQMTAQD---FISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVM--IIGSVLMACSGLKCMSQT 381 (835)
Q Consensus 307 ~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~~ 381 (835)
...|+++.|.+.+.+..+.. ...+-.....+.+.|+++.|...+.+..+.. |+.. .-..........++++.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45799999999998876542 2233444566778899999999999987643 5543 333346667789999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---chhHHHH----HHHHHhCCChHHHHHHHHHHh
Q 043955 382 KEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKD---VVSWTSM----ISSYVHNGLANEALELFYLMN 454 (835)
Q Consensus 382 ~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~l----i~~~~~~g~~~~Al~lf~~m~ 454 (835)
...+..+.+..+.+..+...+...|...|++++|.+.+..+.+.. ...+..+ ..+....+..+++.+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999888899999999999999999999999887542 2222111 111122222222222333332
Q ss_pred hcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC--ChhH--
Q 043955 455 EANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK--DLIL-- 530 (835)
Q Consensus 455 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~-- 530 (835)
... |+ ....++..+..++..+..+|+.++|.+++++..++ |...
T Consensus 253 ~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 253 KNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred HHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 211 10 01235667778888888999999999999887653 3221
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--H-HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHH
Q 043955 531 -WTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI--T-FLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLV 606 (835)
Q Consensus 531 -~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~--t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 606 (835)
+..........++.+.+++.+++..+ ..|+.. . ..++...|.+.|++++|.++|+... .+...|+.+.+..+.
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La 377 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAA 377 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHH
Confidence 12222233345788899999999887 577776 4 4577888999999999999999432 125689988899999
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 043955 607 DLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m 625 (835)
.++.+.|+.++|.+++++.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999874
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.29 E-value=4.8e-09 Score=114.04 Aligned_cols=273 Identities=9% Similarity=0.045 Sum_probs=182.0
Q ss_pred cCChhhHHHHHHhcCCC--Cch-hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhH--hHHHHhhcccchhhHHH
Q 043955 409 CGNIDYSRNVFESIESK--DVV-SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLV--SALSAASSLSILKKGKE 483 (835)
Q Consensus 409 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 483 (835)
.|+++.|++.+...++. ++. .+-.......+.|++++|.+.|.++.+ ..|+..... .........|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555544432 111 121112223556666666666666654 334443222 11234455566666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCCh-----------hHHHHHHHHHHhcCChHHHHHHHH
Q 043955 484 LNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDL-----------ILWTSMINANGLHGRGKVAIDLFY 552 (835)
Q Consensus 484 i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-----------~~~~~li~~~~~~g~~~~Al~l~~ 552 (835)
..+.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665554 33566777788888888888888888887764321 134444444445555666666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 043955 553 KMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT- 630 (835)
Q Consensus 553 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~- 630 (835)
..... .+.+......+..++...|+.++|.+.++...+ ..|+.... ++......|+.+++.+.+++. .-.|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 344666778888999999999999999987764 34554322 122222459999999999887 55564
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
+..+.++...|...++.+.|+..++++++.+|++ ..|..|+.++...|+-++|.+.++.-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788889999999999999999999999986 44789999999999999999988754
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.4e-08 Score=103.51 Aligned_cols=351 Identities=12% Similarity=0.058 Sum_probs=236.9
Q ss_pred CCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHH-HHHHHH
Q 043955 359 DADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWT-SMISSY 437 (835)
Q Consensus 359 ~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~-~li~~~ 437 (835)
.-|.+.+-..--..-..+....|...+-.++..-+-. |.+-+..-.-+.+.+.+..+-...+..+...-. -+..+|
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~---W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWF---WSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcc---hHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 3343333333333445555566665555554433322 223333222333444444443333332211111 133455
Q ss_pred HhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh-hcccchhhHHHHHHHHHHhCC-C-CchhHHHHHHHHHHhcCChh
Q 043955 438 VHNGLANEALELFYLMNEANVESDSITLVSALSAA-SSLSILKKGKELNGFIIRKGF-N-LEGSVASSLVDMYARCGALD 514 (835)
Q Consensus 438 ~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~-~-~~~~~~~~li~~y~k~g~~~ 514 (835)
-...+.+++++-.......|+. +..-+.+.+.++ -...++++|..+++.+.+... . -|..+|+.++-.-..+.++.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~-~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFP-NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 5556778888888877777653 333333444444 456788999999999888732 1 24566665553333333333
Q ss_pred h-HHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhc
Q 043955 515 I-ANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCD 592 (835)
Q Consensus 515 ~-A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 592 (835)
- |..++ .+.+=.+.|-..+.+-|+..++.++|+..|++.++ +.|.. ..|+.+..-+....+...|.+-++...
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-- 391 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-- 391 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH--
Confidence 2 33333 23333455666677888899999999999999998 67776 467778888999999999999999887
Q ss_pred CCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 593 YQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 593 ~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
.|.| |-..|-.++.+|.-.+...=|+=+++++ .++| |+.+|.+|...+.+-++.+.|+..+++++...-.+..+|+
T Consensus 392 -di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 392 -DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred -hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 7889 6888999999999999999999999998 7788 7789999999999999999999999999999998999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
.|+++|-..++.++|....++--+.- +..| .-.|...++...|.+...++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~----------~~eg---------~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVS----------ELEG---------EIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH----------Hhhc---------ccchHHHHHHHHHHHHHHhh
Confidence 99999999999999998876543310 0000 12355566666777776666
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=5.9e-10 Score=112.34 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=165.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA 572 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a 572 (835)
....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|++.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677888999999999999999987653 356788999999999999999999999998842 2344567777888
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a 650 (835)
+...|++++|.++|+..............+..+..++.+.|++++|.+.+++. ...| +...|..+...+...|+.+.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999988754222224567888999999999999999999887 4455 455788888889999999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 651 EIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...+++++++.|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999889999999999999999999998877664
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.3e-08 Score=104.66 Aligned_cols=194 Identities=14% Similarity=0.066 Sum_probs=157.7
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043955 494 NLEGSVASSLVDMYARCGALDIANKVFNCVQTK---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALL 570 (835)
Q Consensus 494 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll 570 (835)
+..+..|-++.-.|.-.|+.++|++.|.+...- =-..|-.....|+-.|..++|+..+...-+. ++-...-+.-+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 344566777777888889999999999876643 3468999999999999999999999988773 222333445556
Q ss_pred HHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCC------C-CHHHHHHHHHH
Q 043955 571 YACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM--QIE------P-TAEVWCALLGA 640 (835)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~------p-~~~~~~~ll~a 640 (835)
.-|.+.+..+.|.++|.... +|.| ++-.+.-++-+....+.+.+|...++.. +++ + -..+|+.|..+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 66888999999999998776 8888 5777777777778888999999888765 221 1 12357888899
Q ss_pred HhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 641 CRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 641 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
||+.+..+.|+..+++++.+.|.++.+|..++-+|.-.|+.+.|.....+.
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887543
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.8e-11 Score=88.85 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 043955 526 KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSH 575 (835)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 575 (835)
||+++||++|.+|+++|+.++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.23 E-value=3.9e-11 Score=124.53 Aligned_cols=251 Identities=15% Similarity=0.171 Sum_probs=97.3
Q ss_pred HHHHHHhcCChhhHHHHHHhc-C----CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhccc
Q 043955 402 IVDVYGKCGNIDYSRNVFESI-E----SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLS 476 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~ 476 (835)
+..++.+.|++++|.+++++. . ..|+.-|..+.......+++++|++.++++...+.. +...+..++.- ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355555666666666666322 1 123444444444455566666666666666553322 22233333333 4555
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 477 ILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ-----TKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 477 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
+++.|.++.....+.. +++..+..++..|.+.|+.+++.++++.+. +.+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666655554443322 344455667777778888888888877643 346677888888888888888899888
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043955 552 YKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP 629 (835)
Q Consensus 552 ~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 629 (835)
++.++ ..|+. .....++..+...|+.+++.+.++...+.. .+++..+..++.++...|+.++|+..+++. ...|
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 88888 67764 456677888888888888888888776553 234566777888888888999999888887 4445
Q ss_pred -CHHHHHHHHHHHhhcCchhHHHHHHHHHHhc
Q 043955 630 -TAEVWCALLGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 630 -~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 660 (835)
|+.+...+..+....|+.+.|..+.+++++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 6667777888888889999888888877653
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=2.5e-11 Score=88.13 Aligned_cols=50 Identities=36% Similarity=0.645 Sum_probs=48.1
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 043955 123 EDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACED 172 (835)
Q Consensus 123 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 172 (835)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999864
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=1.3e-05 Score=85.56 Aligned_cols=509 Identities=13% Similarity=0.145 Sum_probs=305.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhc----CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043955 93 DFIVNSLVAMYAKCYDFRKARQLFDRM----GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQ 168 (835)
Q Consensus 93 ~~~~~~Li~~y~~~g~~~~A~~~f~~m----~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 168 (835)
+.+|-.-+....+.|++...+..|++. |.......|...|.-....|-++-++.+|++..+. .|. .-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 456777777888899999999999975 55456678999999999999999999999999864 333 2455567
Q ss_pred HhhcCCChhHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhCCCh---hHHHHHHhcCCCC--C--cccHHHHHHH
Q 043955 169 ACEDSSFETLGMEIHAATVKS------GQNLQVYVANALIAMYARCGKM---TEAAGVLYQLENK--D--SVSWNSMLTG 235 (835)
Q Consensus 169 a~~~~~~~~~a~~l~~~~~~~------g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~--d--~~~~~~li~~ 235 (835)
-++..++++++.+.+..++.. ....+-..|.-+-+..++..+. -....+++.+..+ | -..|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 778889999999888877642 2244566777777777665443 2334455555442 3 3479999999
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHH
Q 043955 236 FVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYM 315 (835)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 315 (835)
|.+.|.+++|.++|++-... ..+..-|..+..+|+.......+..+- .....+..+. -.-+++-.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~ 322 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELH 322 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHH
Confidence 99999999999999987764 233445666777766543222211111 0000111110 01123333
Q ss_pred HHHHHhcCCC---------------CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchH
Q 043955 316 GRVFYQMTAQ---------------DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQ 380 (835)
Q Consensus 316 ~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 380 (835)
..-|+.+..+ ++..|..-+.. ..|+..+-...|.+..+. +.|-..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka----------------- 382 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKA----------------- 382 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccC-----------------
Confidence 4444444332 33344333322 245555555555555443 222210
Q ss_pred HHHHHHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHHHHhcCCCCc-------hhHHHHHHHHHhCCChHHHHHHHHH
Q 043955 381 TKEIHGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNVFESIESKDV-------VSWTSMISSYVHNGLANEALELFYL 452 (835)
Q Consensus 381 ~~~i~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~Al~lf~~ 452 (835)
... ...+..+.+.|-..|+++.|+.+|++...-+- ..|-.-...=.++.+++.|+++.++
T Consensus 383 ------------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 383 ------------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred ------------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 001 12566666666667777777777766554221 2233333333455566666666655
Q ss_pred HhhcCCc----------C-------ChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhh
Q 043955 453 MNEANVE----------S-------DSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDI 515 (835)
Q Consensus 453 m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 515 (835)
....--. | +...|+..++---..|-++..+.+++.++...+.....+-| ..-.+-...-+++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfee 529 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEE 529 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHH
Confidence 5431111 1 11223333444445567888888888888876653332222 2223345566788
Q ss_pred HHHHhhhCC----CCCh-hHHHHHHHHHHhc-C--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--cccCcHHHHHHH
Q 043955 516 ANKVFNCVQ----TKDL-ILWTSMINANGLH-G--RGKVAIDLFYKMEAESFAPDHITFLALLYAC--SHSGLINEGKKF 585 (835)
Q Consensus 516 A~~~f~~~~----~~~~-~~~~~li~~~~~~-g--~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~--~~~g~~~~a~~~ 585 (835)
|.+++++-. -|++ ..||..+.-+.+. | ..+.|..+|++.++ |.+|...-+..|+.|- -.-|+...|+.+
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888754 2555 3788877766542 3 67899999999998 7888876655565543 234777777777
Q ss_pred HHHhhh--------------------cCCCCCChhHHHH----------------HHHHHhhcCCHHHHHHHHHhC--CC
Q 043955 586 LEIMRC--------------------DYQLDPWPEHYAC----------------LVDLLGRANHLEEAYQFVRSM--QI 627 (835)
Q Consensus 586 ~~~m~~--------------------~~~i~p~~~~y~~----------------lv~~l~r~g~~~eA~~~~~~m--~~ 627 (835)
++.... -||+.-+.+.|.- ..++=.+-|.++.|..++.-. -.
T Consensus 609 yerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 609 YERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 776542 2454444444432 234555678899998888655 12
Q ss_pred CC--CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 628 EP--TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 628 ~p--~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
.| +...|.+.=.--..|||-+--+.+.
T Consensus 689 dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 689 DPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred CCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34 5667888887788899955444443
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1e-07 Score=97.44 Aligned_cols=389 Identities=11% Similarity=0.071 Sum_probs=278.0
Q ss_pred ccCChhHHHHHHHhcCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHH
Q 043955 308 KCCCVNYMGRVFYQMTA---QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEI 384 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i 384 (835)
..+++..|+.+|++... +++..|---+..=.++.....|..++++....-...|..-| ..+..-..+|+...++++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 45677888888888764 46677877788888888888888888888765444444333 233334556888888888
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC--CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh
Q 043955 385 HGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE--SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDS 462 (835)
Q Consensus 385 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~ 462 (835)
+..-..-.+ +...+++.|++-.+-..++.|+.++++.. .|++.+|--...-=.++|+..-|..+|...... -.|.
T Consensus 164 ferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 164 FERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 887776543 44578888888888888888888888754 588888877766667788888888888877652 2233
Q ss_pred hhhHhHHHHhhc----ccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhhHHHHh--------hhCCCC---
Q 043955 463 ITLVSALSAASS----LSILKKGKELNGFIIRKGFNLE-GSVASSLVDMYARCGALDIANKVF--------NCVQTK--- 526 (835)
Q Consensus 463 ~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f--------~~~~~~--- 526 (835)
..-..++.|++. ....+.++-|+.+.+..-.... ..++..+...=-+-|+...-..+. +.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 333344444443 4566777777777776532221 344555555444555543332222 222222
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHh---cccCcHHHHHHHHHHhhhcCCCC
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-------ITFLALLYAC---SHSGLINEGKKFLEIMRCDYQLD 596 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-------~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~i~ 596 (835)
|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=.|| ....+++.++++|+... .+-
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l---~lI 396 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL---DLI 396 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hhc
Confidence 6678888888888899999999999999975 67743 2233333344 46788999999999877 577
Q ss_pred CC-hhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 597 PW-PEHYACLVDLL----GRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 597 p~-~~~y~~lv~~l----~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
|. .-+++-+--+| .|+-++..|.+.+..+ +.-|-.-+....+..-...+++|.....+++.++-.|+|..++..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 74 45555444444 4889999999999877 888988899988888888999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHcCCCccCCceeE
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSW 704 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~ 704 (835)
.+.+=...|+|+.|..+....-+....-.|-.-|
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999998877665544454433
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=2e-07 Score=101.26 Aligned_cols=395 Identities=16% Similarity=0.089 Sum_probs=254.5
Q ss_pred hCCCccccccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 043955 290 QGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIG 366 (835)
Q Consensus 290 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 366 (835)
..+..|..+|..|.-....+|++..+.+.|++...- ....|+.+-..|...|....|+.+++.-......|+..+..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345667888888999999999999999999987643 45679999999999999999999998876655446554444
Q ss_pred HHHH-Hh-ccccCchHHHHHHHHHHHhC--CC---chhHHHHHHHHHHhcCC-----------hhhHHHHHHhcCC----
Q 043955 367 SVLM-AC-SGLKCMSQTKEIHGYIIRKG--LS---DLVILNAIVDVYGKCGN-----------IDYSRNVFESIES---- 424 (835)
Q Consensus 367 ~ll~-a~-~~~~~~~~~~~i~~~~~~~~--~~---~~~~~~~li~~y~k~g~-----------~~~A~~~f~~~~~---- 424 (835)
.+.. .| .+.+..++|...-..++... .. ....+-.+.-+|...-. ..++.+.+++..+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333 34 34577777777777766622 21 22355555555543221 2344555555533
Q ss_pred -CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH-hCCCCchhHHHH
Q 043955 425 -KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR-KGFNLEGSVASS 502 (835)
Q Consensus 425 -~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~ 502 (835)
|+++-|- ---|+..++.+.|++..++....+-.-+...|.-+.-.++..+++..|..+.+.... .|.....-. .
T Consensus 477 dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~ 552 (799)
T KOG4162|consen 477 DPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--G 552 (799)
T ss_pred CchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--h
Confidence 3333332 234667778899999999888865566666666666666777888888888776654 222110000 0
Q ss_pred HHHHHHhcCChhhHHHH--------------------------hhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 503 LVDMYARCGALDIANKV--------------------------FNCVQ-----TKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~--------------------------f~~~~-----~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
-+..-.+-++.++|... +..+. ..|.++-..-+.+..+ -+.+.+..-.
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~ 631 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSEL 631 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhccccc
Confidence 01111112333333322 22111 0122222222222222 1111111000
Q ss_pred HHHHHCCCCCCH--------HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHH
Q 043955 552 YKMEAESFAPDH--------ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFV 622 (835)
Q Consensus 552 ~~m~~~g~~Pd~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~ 622 (835)
. |...-+.|+. ..|......+...+..++|+..+.... ++.| ....|.-.++++...|+++||.+.+
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0 2222233332 224455567888999999998877665 6677 4777888889999999999999988
Q ss_pred HhC-CCCCCHH-HHHHHHHHHhhcCchhHHHH--HHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 623 RSM-QIEPTAE-VWCALLGACRVHSNKELGEI--VAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 623 ~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
... -+.|+.+ +..+|.......|+-.+|+. +...+++++|.|+.+|..|+-++-+.|+.++|.+-....-+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 776 7888765 77788888888899888888 99999999999999999999999999999999988765543
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.9e-08 Score=101.67 Aligned_cols=496 Identities=12% Similarity=0.048 Sum_probs=275.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc-CCCCCeeeHHHHHHHHHhCC
Q 043955 61 FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM-GEKEDVVLWNSIISAYSASG 139 (835)
Q Consensus 61 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m-~~~~~~~~~n~li~~~~~~g 139 (835)
+..+++-+....++..|.-+-+.+...+..|+..- -+..+|.-.|+.+.|..+...- -++.|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY--WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH--HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33444444455566667766676666665544433 3556666677777777776644 12267888888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHh
Q 043955 140 QCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLY 219 (835)
Q Consensus 140 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 219 (835)
++++|+.++..-. +.-+.+.|-..=. +..-+.+.+...+..-.+.++- -.--..|......++|+..|.
T Consensus 97 ~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essic------~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 97 EWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDLMINLESSIC------YLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHhcccc---hhhcchhhcchhh--hceeccCcccccccccchhcee------eeeeehhhhhccHHHHHHHHH
Confidence 8999888877321 1111111100000 0000111111111000111100 000123334455666666666
Q ss_pred cCCCCCcccHHHHHHHHHcCC-ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCC-Ccccc
Q 043955 220 QLENKDSVSWNSMLTGFVQND-LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGF-VSDLQ 297 (835)
Q Consensus 220 ~~~~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~ 297 (835)
+....|+..+.++..--...= -.++-+++|+.+. .. + ....+.+.-+.+++...-... .++..
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~---~a----~--------~~~ed~e~l~~lyel~~~k~~n~~~~~ 230 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLD---LA----M--------LTKEDVERLEILYELKLCKNRNEESLT 230 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhccc---HH----h--------hhhhHHHHHHHHHHhhhhhhccccccc
Confidence 655555554444332111110 1112222222110 00 0 000001111111111100000 00000
Q ss_pred ccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccC
Q 043955 298 IGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKC 377 (835)
Q Consensus 298 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 377 (835)
...- ...+. .+.++...-.-..-+...+++.+.++++....+. .++....+..-|..+...|+
T Consensus 231 r~~~-~sl~~---------------l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~ 293 (611)
T KOG1173|consen 231 RNED-ESLIG---------------LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGK 293 (611)
T ss_pred cCch-hhhhh---------------hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcc
Confidence 0000 00000 0123334444455566778888888888887764 23344444445556677777
Q ss_pred chHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHh
Q 043955 378 MSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKD---VVSWTSMISSYVHNGLANEALELFYLMN 454 (835)
Q Consensus 378 ~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~Al~lf~~m~ 454 (835)
...-..+--.+++.-|.....|-++.-.|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-
T Consensus 294 ~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa 373 (611)
T KOG1173|consen 294 SNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA 373 (611)
T ss_pred cchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence 7776666667777777777799999999999999999999998876533 4679999999999999999998887765
Q ss_pred hcCCcCC-hhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhH
Q 043955 455 EANVESD-SITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLIL 530 (835)
Q Consensus 455 ~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~ 530 (835)
+. -|. ...+.-+--- |.+.++++-|.+.|.... ..|+..
T Consensus 374 rl--~~G~hlP~LYlgme-----------------------------------y~~t~n~kLAe~Ff~~A~ai~P~Dplv 416 (611)
T KOG1173|consen 374 RL--MPGCHLPSLYLGME-----------------------------------YMRTNNLKLAEKFFKQALAIAPSDPLV 416 (611)
T ss_pred Hh--ccCCcchHHHHHHH-----------------------------------HHHhccHHHHHHHHHHHHhcCCCcchh
Confidence 42 111 0111111112 334455555555554433 234555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---C-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAE--SFA---P-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYA 603 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~--g~~---P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~ 603 (835)
.+-+....-..+.+.+|...|+..+.. .+- | -..|++.|..+|.+.+..++|+.+|+... .+.| +..+|+
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL---~l~~k~~~~~a 493 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL---LLSPKDASTHA 493 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH---HcCCCchhHHH
Confidence 555555555556666666666665521 011 1 34568888899999999999999998766 5567 688999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 043955 604 CLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGAC 641 (835)
Q Consensus 604 ~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~ 641 (835)
.++-++.-.|.++.|.+.+.+. .++||..+-..+|+.+
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999887 8899888777887644
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=8.7e-09 Score=117.12 Aligned_cols=210 Identities=13% Similarity=0.028 Sum_probs=155.8
Q ss_pred CChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHh
Q 043955 441 GLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVF 520 (835)
Q Consensus 441 g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f 520 (835)
+++++|...+++..+ +.|+ +...+..+..++...|+.++|...|
T Consensus 318 ~~~~~A~~~~~~Al~--ldP~----------------------------------~~~a~~~lg~~~~~~g~~~~A~~~~ 361 (553)
T PRK12370 318 NAMIKAKEHAIKATE--LDHN----------------------------------NPQALGLLGLINTIHSEYIVGSLLF 361 (553)
T ss_pred hHHHHHHHHHHHHHh--cCCC----------------------------------CHHHHHHHHHHHHHccCHHHHHHHH
Confidence 457888888888876 3454 2333455566677778888888888
Q ss_pred hhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCC
Q 043955 521 NCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLD 596 (835)
Q Consensus 521 ~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 596 (835)
++..+ .+...|..+...|...|++++|+..|++..+ +.|+.. .+..++.++...|+.++|...++...... .
T Consensus 362 ~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~ 437 (553)
T PRK12370 362 KQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--L 437 (553)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--c
Confidence 77553 3456788888999999999999999999998 567653 23344445667899999999998876331 3
Q ss_pred C-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 597 P-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEV-WCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 597 p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
| ++..+..+..+|...|++++|.+.+++. +..|+... ++.|...+...| +.+....+++++..-..+.....+..
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~ 515 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL 515 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH
Confidence 5 4666788899999999999999999887 66776554 444444555555 57888888888776666666667999
Q ss_pred HHHhcCCchHHHHHHHHHHc
Q 043955 674 VFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 674 ~y~~~g~~~~a~~~~~~m~~ 693 (835)
+|+-.|+-+.+..++ .+++
T Consensus 516 ~~~~~g~~~~~~~~~-~~~~ 534 (553)
T PRK12370 516 VLVAHGEAIAEKMWN-KFKN 534 (553)
T ss_pred HHHHHhhhHHHHHHH-Hhhc
Confidence 999999999998884 4544
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=1.6e-06 Score=92.12 Aligned_cols=546 Identities=13% Similarity=0.114 Sum_probs=308.3
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCChhhHHHH
Q 043955 88 GYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRV-GLVTNAYTFVAA 166 (835)
Q Consensus 88 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~l 166 (835)
+..|....|-.+-+. ++.+...+.+||. .|-..+.....+|+.......|++.+.. .+.--...+...
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmpR-----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~ly 144 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMPR-----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLY 144 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCCH-----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHH
Confidence 445666666655443 4556666777766 7888888888899988888888876543 333344566667
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCc----------ccHHHHHHHH
Q 043955 167 LQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDS----------VSWNSMLTGF 236 (835)
Q Consensus 167 l~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~----------~~~~~li~~~ 236 (835)
++.....+-++.+..++.+.++..+. .-+--|..+++.+++++|.+.+..+...|. ..|+-+-.-.
T Consensus 145 l~Fv~~~~lPets~rvyrRYLk~~P~----~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdli 220 (835)
T KOG2047|consen 145 LKFVESHGLPETSIRVYRRYLKVAPE----AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLI 220 (835)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCHH----HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHH
Confidence 77777777777777777777664332 245666677777777777777776654332 2233222222
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCC--cc--ccccchhhhhhhccCCh
Q 043955 237 VQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFV--SD--LQIGNTLMDMYAKCCCV 312 (835)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~--~~~~~~Li~~y~~~g~~ 312 (835)
+++-+.-..+. ... +++.|+. +| ...|++|.+-|.+.|.+
T Consensus 221 s~~p~~~~sln--------------------------------vda----iiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 221 SQNPDKVQSLN--------------------------------VDA----IIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HhCcchhcccC--------------------------------HHH----HHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 22211111111 111 1222221 11 34677788888888888
Q ss_pred hHHHHHHHhcCCC--CcccHHHHHHHHHhcCChHHHHHHHHHHH--HcCCCCChhHHHHHHHHhccccCchHHHHHHHHH
Q 043955 313 NYMGRVFYQMTAQ--DFISWTTIIAGYAQNNCHLKALELFRTVQ--LEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYI 388 (835)
Q Consensus 313 ~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~ 388 (835)
+.|+.+|++..+. .+.-++.+.++|++-....-+..+= +. +.|-.-+...+...+..+..+-+.. -.-+-+-+
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl~~~~a~~e~lm~rr-~~~lNsVl 341 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDLELHMARFESLMNRR-PLLLNSVL 341 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhHHHHHHHHHHHHhcc-chHHHHHH
Confidence 8888888775443 4444555666665432211111111 10 1111112222211111111100000 00011122
Q ss_pred HHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC-------CC--CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc
Q 043955 389 IRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE-------SK--DVVSWTSMISSYVHNGLANEALELFYLMNEANVE 459 (835)
Q Consensus 389 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~--~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~ 459 (835)
++.++.+...|..-+..| .|+..+-...|.+.. .+ --..|..+..-|-.+|+.+.|..+|.+..+...+
T Consensus 342 LRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 233333333343333333 233444444444332 11 2346888999999999999999999998764322
Q ss_pred CChhhhHhHHHHhh----cccchhhHHHHHHHHHHh-----------CCC------CchhHHHHHHHHHHhcCChhhHHH
Q 043955 460 SDSITLVSALSAAS----SLSILKKGKELNGFIIRK-----------GFN------LEGSVASSLVDMYARCGALDIANK 518 (835)
Q Consensus 460 p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~-----------g~~------~~~~~~~~li~~y~k~g~~~~A~~ 518 (835)
...-+..+=-+|+ +..+.+.|..+.+.+... +.+ .+..+|+-++|.--.+|-++.-..
T Consensus 420 -~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 420 -TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred -chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 1111222333333 334566666665544321 111 123456666777778899999999
Q ss_pred HhhhCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHhcccCcHHHHHHHHHHhhh
Q 043955 519 VFNCVQTKDLILWTSM---INANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALL---YACSHSGLINEGKKFLEIMRC 591 (835)
Q Consensus 519 ~f~~~~~~~~~~~~~l---i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll---~a~~~~g~~~~a~~~~~~m~~ 591 (835)
+++++.+--+.|=... ...+-.|..++++.+.|++-+..---|+.. .|+..| ..=...-.++.|+.+|+...+
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9998875433332222 223446778999999999877653345542 344444 332334468999999998874
Q ss_pred cCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCH--HHHHHHHHH-HhhcCchhHHHHHHHHHHhcCCCC
Q 043955 592 DYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTA--EVWCALLGA-CRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 592 ~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~--~~~~~ll~a-~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
+..|. -..|-....+=.+-|....|+++++++ .++|.. ..|+.++.- --+.| +..-+.+++++++.=|++
T Consensus 579 --~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~ 655 (835)
T KOG2047|consen 579 --GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDS 655 (835)
T ss_pred --cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChH
Confidence 55553 233444445555679999999999998 455533 378887743 33444 445678899999998875
Q ss_pred CCc--hHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 665 PGN--YVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 665 ~~~--~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
-.- -.-.+.+=.+.|..+.|+.+..--.+
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 433 34567888889999999888864443
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.1e-07 Score=92.89 Aligned_cols=311 Identities=14% Similarity=0.154 Sum_probs=204.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhccccCchHHHHHHHHHHHhCC-Cc---hhHHHHHHHHHHhcCChh
Q 043955 339 QNNCHLKALELFRTVQLEGLDADV-MIIGSVLMACSGLKCMSQTKEIHGYIIRKGL-SD---LVILNAIVDVYGKCGNID 413 (835)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~-~~---~~~~~~li~~y~k~g~~~ 413 (835)
-++++++|.++|-+|.+. .|.. .+-.++-+.+-+.|..+.|..+|..+.++.- +. ..+...|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 346788888888888763 2222 2334455567778888888888888877643 22 226777889999999999
Q ss_pred hHHHHHHhcCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH
Q 043955 414 YSRNVFESIESKDV---VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR 490 (835)
Q Consensus 414 ~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 490 (835)
.|+.+|..+.+.+. ....-|+..|-+..+|++|++.-+++.+.|-++..+-..
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------ 180 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------ 180 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH------------------------
Confidence 99999999877433 445567889999999999999999988766554433221
Q ss_pred hCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HH
Q 043955 491 KGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH--IT 565 (835)
Q Consensus 491 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t 565 (835)
..|.-|...+.-..+++.|...+.+..+- .+..=-.+...+...|+++.|++.++...+. .|+. .+
T Consensus 181 -------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~ev 251 (389)
T COG2956 181 -------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHH
Confidence 11233444455556777777777766543 3333344566778889999999999999884 5655 35
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHhhc
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFV-RSMQIEPTAEVWCALLGACRVH 644 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~-~~m~~~p~~~~~~~ll~a~~~~ 644 (835)
...|..+|.+.|+.+++..++.++.+. .|.++.-..|.++.....-.++|...+ +...-+|+......|+..-..
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~- 327 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA- 327 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc-
Confidence 667788889999999999998877743 344444455555555444455555544 334556766555454443110
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCC
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARD 718 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d 718 (835)
+ ++-|+|.+..-+.+.|-...++..|.+.--.-+-+.|.|.-..
T Consensus 328 --------------d----------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~C 371 (389)
T COG2956 328 --------------D----------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHC 371 (389)
T ss_pred --------------c----------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeC
Confidence 0 1234566666666667666677777666555555666665433
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=2.2e-07 Score=93.69 Aligned_cols=291 Identities=12% Similarity=0.038 Sum_probs=215.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 043955 138 SGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGV 217 (835)
Q Consensus 138 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 217 (835)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+...+.++.+.-.+++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766655444 3345555666777888888888888888776677777777788888888888888877
Q ss_pred HhcCC---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCc
Q 043955 218 LYQLE---NKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVS 294 (835)
Q Consensus 218 f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 294 (835)
.++.. .++..........|.+.|++.+...++..|.+.|+--|... .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 66554 45777888889999999999999999999998886554320 000
Q ss_pred cccccchhhhhhhccCChhHHHHHHHhcCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043955 295 DLQIGNTLMDMYAKCCCVNYMGRVFYQMTA---QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA 371 (835)
Q Consensus 295 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 371 (835)
...+++.+++-....+..+.-...++..+. .++..--+++.-+.+.|+.++|.++..+-.+.+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 011222233333333333333445555543 2555666778888899999999999999988887777 333345
Q ss_pred hccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC--CCCchhHHHHHHHHHhCCChHHHHHH
Q 043955 372 CSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE--SKDVVSWTSMISSYVHNGLANEALEL 449 (835)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~Al~l 449 (835)
+.+.++.+.-.+..+...+..+.+...+.+|...|.|.+.+.+|...|+... .++..+|+-+..+|.+.|++++|-+.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 6777888888888888888888877899999999999999999999999765 47889999999999999999999999
Q ss_pred HHHHhhcCCcCC
Q 043955 450 FYLMNEANVESD 461 (835)
Q Consensus 450 f~~m~~~g~~p~ 461 (835)
+++-+..-..|+
T Consensus 384 r~e~L~~~~~~~ 395 (400)
T COG3071 384 RREALLLTRQPN 395 (400)
T ss_pred HHHHHHHhcCCC
Confidence 998775444444
No 63
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=8.6e-06 Score=87.56 Aligned_cols=529 Identities=16% Similarity=0.175 Sum_probs=286.5
Q ss_pred CCChHhHHHHHHhcCC-CCc-chHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHH
Q 043955 5 CGSVLDAEQLFDKVSQ-RTV-FTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHG 82 (835)
Q Consensus 5 ~g~~~~A~~~f~~~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~ 82 (835)
.|+++.|..+++.... |+. ..|-.+...-...|+..-|.+.| +..|++..++.+|+
T Consensus 457 ~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lhd 514 (1636)
T KOG3616|consen 457 DGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLHD 514 (1636)
T ss_pred cCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 4666666666665442 332 24555555555555554444444 33455666666665
Q ss_pred HHH-------HhCCC-CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 043955 83 LVL-------KCGYD-STDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRV 154 (835)
Q Consensus 83 ~~~-------~~g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 154 (835)
.+. +.|-. .+-+-..+++.+.. .++.+|..+|-+-. .-..-|..|.....|++|+.+-+..
T Consensus 515 ~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn------~te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 515 ILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN------ATEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc------cHHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 432 11211 11122233333333 36777777775421 1233455566666677776654332
Q ss_pred CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhc--CCCCCcccHHHH
Q 043955 155 GLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQ--LENKDSVSWNSM 232 (835)
Q Consensus 155 g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~--~~~~d~~~~~~l 232 (835)
|.+.-...-.+-++++...|.-+.|-++-. ++. -.-+-|..|.+.|.+..|.+.-.. ....|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk~--------sdg-d~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELKE--------SDG-DGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhcc--------ccC-ccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 222111122333455555554444433211 111 124567888888888777665432 122355555566
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCCh
Q 043955 233 LTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCV 312 (835)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 312 (835)
..++.+...+++|=++|+++.. +...+..+.+-..+..|.++-+.
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarf-------------------------- 699 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARF-------------------------- 699 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHh--------------------------
Confidence 6677777777777777777642 11122222222222222222111
Q ss_pred hHHHHHHHhcCCCCccc-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHh
Q 043955 313 NYMGRVFYQMTAQDFIS-WTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRK 391 (835)
Q Consensus 313 ~~A~~~f~~m~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 391 (835)
.-...++. -...-..+.+.|+++.|+..|-+... ....+.+......+..+..+.+.+...
T Consensus 700 ---------afp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 700 ---------AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred ---------hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 10001111 11122334455666666665544321 122233444555666666666555443
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHH
Q 043955 392 GLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSA 471 (835)
Q Consensus 392 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a 471 (835)
... ...|.-+.+-|+..|+++.|.++|-+. ..++--|..|.++|++++|.++-.+.. .|....
T Consensus 762 k~~-s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~----~~e~t~------- 824 (1636)
T KOG3616|consen 762 KTA-SGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECH----GPEATI------- 824 (1636)
T ss_pred ccc-cccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhc----CchhHH-------
Confidence 321 125566777788888888888888654 235566778888888888888765543 222211
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 472 ASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
..|-+-..-.-+.|++.+|.++|-.+..|+.. |..|-+||..++.+++.
T Consensus 825 --------------------------~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 825 --------------------------SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred --------------------------HHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHH
Confidence 12222223344678888888888888877753 67788888888888887
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---
Q 043955 552 YKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQ--- 626 (835)
Q Consensus 552 ~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--- 626 (835)
++ ..||. -|-..+..-+...|++.+|...|-... -+..-|++|-.+|.+++|+.+-+.-+
T Consensus 874 ~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n 938 (1636)
T KOG3616|consen 874 EK-----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGAN 938 (1636)
T ss_pred HH-----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccccc
Confidence 66 34554 355666667777888888887775432 35567888888888888888876642
Q ss_pred CCCC-HHHHHHHH------HHHhhcCchhHHHHHH------HHHHh-----cCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 627 IEPT-AEVWCALL------GACRVHSNKELGEIVA------KKLLE-----LDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 627 ~~p~-~~~~~~ll------~a~~~~~~~~~a~~~~------~~~~~-----l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
.+.. ...|.--+ ....+||-++.|...+ +-+++ ....-+..++.|+..+...|++++|.+-.
T Consensus 939 ~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 939 AEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhh
Confidence 1111 22343222 1233455554443321 11222 22345667888999999999999997765
Q ss_pred HHH
Q 043955 689 MRM 691 (835)
Q Consensus 689 ~~m 691 (835)
-..
T Consensus 1019 vea 1021 (1636)
T KOG3616|consen 1019 VEA 1021 (1636)
T ss_pred HHH
Confidence 443
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.7e-08 Score=109.16 Aligned_cols=237 Identities=16% Similarity=0.203 Sum_probs=165.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCC----------Cch-hHHHHHHHHHhCCChHHHHHHHHHHhhc---CCcCChh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESK----------DVV-SWTSMISSYVHNGLANEALELFYLMNEA---NVESDSI 463 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~Al~lf~~m~~~---g~~p~~~ 463 (835)
+...|..+|...|+++.|..+|....+. .+. .-+.+...|...+++.+|..+|+++..- ..-++..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5566888888888888888888755431 111 1233555677888888888888888651 1111211
Q ss_pred hhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCC
Q 043955 464 TLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGR 543 (835)
Q Consensus 464 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 543 (835)
.+ ..+++.|...|.+.|++++|...+
T Consensus 281 ~v-------------------------------a~~l~nLa~ly~~~GKf~EA~~~~----------------------- 306 (508)
T KOG1840|consen 281 AV-------------------------------AATLNNLAVLYYKQGKFAEAEEYC----------------------- 306 (508)
T ss_pred HH-------------------------------HHHHHHHHHHHhccCChHHHHHHH-----------------------
Confidence 11 234456667788889998888875
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhhhcCC--CCC---C-hhHHHHHHHHHhhcCCH
Q 043955 544 GKVAIDLFYKMEAESFAPDHI--TFLALLYACSHSGLINEGKKFLEIMRCDYQ--LDP---W-PEHYACLVDLLGRANHL 615 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--i~p---~-~~~y~~lv~~l~r~g~~ 615 (835)
++|++++++ ..|..+..+ -+..+...|.+.+.+++|..++....+-+. ..+ . ..+|+.|..+|-..|++
T Consensus 307 -e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 307 -ERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred -HHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 446777777 233444333 356666778999999999998886655443 222 1 57899999999999999
Q ss_pred HHHHHHHHhC---------CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhc----CCCCC---CchHHHHHHHHhc
Q 043955 616 EEAYQFVRSM---------QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLEL----DPGNP---GNYVLISNVFAAS 678 (835)
Q Consensus 616 ~eA~~~~~~m---------~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l----~p~~~---~~~~~l~~~y~~~ 678 (835)
+||+++++++ ...+. ....+.|..+|...++.+.|...+++.+.+ .|+++ ..|..|+-+|.+.
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 9999999886 11232 336778888998888988888888876643 45554 4577788899999
Q ss_pred CCchHHHHHHHHH
Q 043955 679 RKWKDVEQVRMRM 691 (835)
Q Consensus 679 g~~~~a~~~~~~m 691 (835)
|++++|.++-...
T Consensus 464 g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 464 GNYEAAEELEEKV 476 (508)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999986654
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=2.6e-07 Score=93.26 Aligned_cols=280 Identities=14% Similarity=0.024 Sum_probs=156.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCch-hHHHHHHHHHHhcCChhhHHHH
Q 043955 340 NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDL-VILNAIVDVYGKCGNIDYSRNV 418 (835)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~li~~y~k~g~~~~A~~~ 418 (835)
.|++..|.++..+-.+.+-.|- ..|.....+....|+.+.+-.....+.+...++. .+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5778888888777666654442 2344455566777888888888888777744443 4888888888888998888877
Q ss_pred HHhcC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh-------hhhHhHHHHhhcccchhhHHHHHHHH
Q 043955 419 FESIE---SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDS-------ITLVSALSAASSLSILKKGKELNGFI 488 (835)
Q Consensus 419 f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~i~~~~ 488 (835)
.++.. .+++........+|.+.|++.+.+.+..+|.+.|+--|+ .++..+|.-+...+..+.-++.+...
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 76554 467778888899999999999999999999998865554 34444444444433333322222222
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043955 489 IRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLA 568 (835)
Q Consensus 489 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ 568 (835)
-+ .... ++..-.+++.-+.+.|+.++|.++.++..+.+..|.-.
T Consensus 256 pr-~lr~-------------------------------~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---- 299 (400)
T COG3071 256 PR-KLRN-------------------------------DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---- 299 (400)
T ss_pred cH-Hhhc-------------------------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----
Confidence 11 1222 33344444444555555555555555555544444421
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCch
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNK 647 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~ 647 (835)
.+-.|..-++.+.=.+..+.-.+.++-+| ..+..++.++.+.+.+.+|.++++.. +..|+...|.-|..++-..|+.
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 22223344443333333333333333333 33344444444444444444444433 4444444444444444444444
Q ss_pred hHHHHHHHHHH
Q 043955 648 ELGEIVAKKLL 658 (835)
Q Consensus 648 ~~a~~~~~~~~ 658 (835)
+.|..+.+..+
T Consensus 378 ~~A~~~r~e~L 388 (400)
T COG3071 378 EEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.6e-06 Score=87.47 Aligned_cols=263 Identities=12% Similarity=0.045 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHH---HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh-
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSM---ISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAA- 472 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~- 472 (835)
....++.+.|...|+.++|...|++...-|+.+..+| .-.+.+.|++++--.+-..+.... +-....| ++.+|
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w--fV~~~~ 309 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW--FVHAQL 309 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh--hhhhhh
Confidence 3777888888888888888888888776665555544 223456788887777776665421 1111111 22222
Q ss_pred -hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC--C-CChhHHHHHHHHHHhcCChHHHH
Q 043955 473 -SSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ--T-KDLILWTSMINANGLHGRGKVAI 548 (835)
Q Consensus 473 -~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~Al 548 (835)
-...+.+.|..+-+..++..-. +...+-.-...+...|+.++|.-.|+... . -+..+|..++..|...|+..||+
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 2234555555555555443211 12222222345567899999999998755 3 48899999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHhc-ccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 549 DLFYKMEAESFAPDHITFLALL-YACS-HSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 549 ~l~~~m~~~g~~Pd~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.+-+..... +.-+..+...+. ..|. ....-+.|.+++++-. .++|+ ......+..++.+.|+.+++..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 988877663 233334444332 2332 3344678999988655 78886 677788899999999999999999987
Q ss_pred -CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 626 -QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 626 -~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
...||....+.|....+..+....|..-+..++.++|+|-.+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 678999999999999999999999999999999999987433
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=2.9e-08 Score=103.18 Aligned_cols=207 Identities=12% Similarity=0.033 Sum_probs=148.3
Q ss_pred hhhHHHHHHHHHHh-CCCCc--hhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 478 LKKGKELNGFIIRK-GFNLE--GSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 478 ~~~a~~i~~~~~~~-g~~~~--~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
.+.+..-+..++.. ...++ ...+..+...|.+.|+.++|...|+...+ .+...|+.+...|...|++++|++.|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444445432 22222 45677888889999999999999987653 46789999999999999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 043955 552 YKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QIE 628 (835)
Q Consensus 552 ~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~ 628 (835)
++.++ +.|+. .++..+..++...|++++|.+.|+... .+.|+.........++.+.++.++|.+.+++. ...
T Consensus 122 ~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al---~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 122 DSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY---QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 99998 67875 567888888899999999999999877 45664322222233455678999999999664 333
Q ss_pred CCHHHHHHHHHHHhhcCchhHHHHHHHHH-------HhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 629 PTAEVWCALLGACRVHSNKELGEIVAKKL-------LELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 629 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~-------~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+...|. +. ....|+.+.+. +.+.+ .++.|+.+.+|..|+.+|...|++++|....++.-+
T Consensus 197 ~~~~~~~-~~--~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KEQWGWN-IV--EFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred ccccHHH-HH--HHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4433332 21 12245554432 33333 366777788999999999999999999999876665
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.98 E-value=7.9e-08 Score=96.71 Aligned_cols=196 Identities=17% Similarity=0.159 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMY 507 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 507 (835)
..+..+...|...|++++|.+.|++.... .|+. ...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~----------------------------------~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDD----------------------------------YLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc----------------------------------HHHHHHHHHHH
Confidence 44555666777777777777777776542 2321 12334455556
Q ss_pred HhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHH
Q 043955 508 ARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 583 (835)
...|++++|.+.|++.. ..+...|..+...|...|++++|++.|++.......|. ...+..+..++...|+.++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666665543 23445667777777777888888888887776432232 234555666677788888888
Q ss_pred HHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhc
Q 043955 584 KFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 584 ~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 660 (835)
.+|+.... ..| +...+..++.++...|++++|.+.+++. ...| ++..|..+.......|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88877663 345 3566777888888888888888887776 3333 4455556666677778888888877776665
Q ss_pred CC
Q 043955 661 DP 662 (835)
Q Consensus 661 ~p 662 (835)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 44
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=1.1e-05 Score=88.17 Aligned_cols=440 Identities=15% Similarity=0.121 Sum_probs=267.4
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch-HH
Q 043955 190 GQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVC-TV 265 (835)
Q Consensus 190 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 265 (835)
.+.-|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++-....-.|+..+ +.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4556888999999999999999999999998654 3456799999999999999999999988765443354443 33
Q ss_pred HHHHHHh-ccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcC----CCCcccHHHHHHHHHhc
Q 043955 266 NAVSASG-RLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMT----AQDFISWTTIIAGYAQN 340 (835)
Q Consensus 266 ~ll~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~ 340 (835)
..-..|. +.+..+++...-..++...- .+++.+......|..+. .....+|. -+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~--------------~~~~~l~~~~~l~lGi~y~~~A~~a~~~s------eR~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLG--------------GQRSHLKPRGYLFLGIAYGFQARQANLKS------ERD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhh--------------hhhhhhhhhHHHHHHHHHHhHhhcCCChH------HHH
Confidence 3334443 45566666655555554210 01111111111111110 00111111 011
Q ss_pred CChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC-chhHHHHHHHHHHhcCChhhHHHH
Q 043955 341 NCHLKALELFRTVQLEG-LDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKCGNIDYSRNV 418 (835)
Q Consensus 341 g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~ 418 (835)
-...++++.+++..+.+ -.|+...|.++- ++-.++++.|.+.....++.+.. +...+.-|.-.+...+++.+|..+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 22456777777776543 456555555554 44567888888888888888554 455888888888888999999888
Q ss_pred HHhcCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHhhc--CCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCC
Q 043955 419 FESIESK---DVVSWTSMISSYVHNGLANEALELFYLMNEA--NVESDSITLVSALSAASSLSILKKGKELNGFIIRKGF 493 (835)
Q Consensus 419 f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 493 (835)
.+...+. |-+.-..-|..-..-++.++|+.....|..- ...|-..|. . .|....-+.-...... ..
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~----~----~g~~~~lk~~l~la~~-q~ 606 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL----D----EGKLLRLKAGLHLALS-QP 606 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh----h----hhhhhhhhcccccCcc-cc
Confidence 7765431 2111111122223367778887777766541 111111111 0 0000000000000000 00
Q ss_pred CCchhHH---HHHHHHHHhcCChhhHHHHhhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-
Q 043955 494 NLEGSVA---SSLVDMYARCGALDIANKVFNCVQTKD------LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH- 563 (835)
Q Consensus 494 ~~~~~~~---~~li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~- 563 (835)
.-.+.++ .+++..-.+.-..+.....|...+.|+ ...|......+...++.++|...+.+... +.|-.
T Consensus 607 ~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~ 684 (799)
T KOG4162|consen 607 TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSA 684 (799)
T ss_pred cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhH
Confidence 0011111 222221122222222233333333343 23577778888889999999888777765 44543
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHH
Q 043955 564 ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQ--FVRSM-QIEP-TAEVWCALL 638 (835)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~--~~~~m-~~~p-~~~~~~~ll 638 (835)
..|.-........|..+||.+.|.... -++|+ +.....+..+|.+.|+-.-|.. ++..+ .+.| +...|-.|.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 334444455677899999999998665 78895 8888999999999997666666 88777 7788 466999999
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
-..++.|+.+.|-..+.-+++|++.+|
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999999876
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=3.3e-07 Score=89.59 Aligned_cols=282 Identities=13% Similarity=0.128 Sum_probs=177.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHhHHHHHHHHHHhCCCcc---ccccchhhhhhhccCChhH
Q 043955 239 NDLYCKAMQFFRELQGAGQKPDQV-CTVNAVSASGRLGNLLNGKELHAYAIKQGFVSD---LQIGNTLMDMYAKCCCVNY 314 (835)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~ 314 (835)
++++++|.++|-+|.+. .|..+ +-.++-+.+.+.|..+.|..+|..++++.--+. ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46778888888888763 23222 344556667778888888888888776521111 1233345667888899999
Q ss_pred HHHHHHhcCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH----HHHHHHHhccccCchHHHHHHHH
Q 043955 315 MGRVFYQMTAQDF---ISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMI----IGSVLMACSGLKCMSQTKEIHGY 387 (835)
Q Consensus 315 A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~~~~i~~~ 387 (835)
|+.+|..+.+.+. .....|+..|-+..++++|++.-+++.+.+-++..+- |.-+........+.+.++..+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998877443 3456678889999999999999999888776665543 22333344445666777777777
Q ss_pred HHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCch----hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChh
Q 043955 388 IIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVV----SWTSMISSYVHNGLANEALELFYLMNEANVESDSI 463 (835)
Q Consensus 388 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~ 463 (835)
..+..+....+.-.+.+.+...|+++.|.+.++.+.+.|+. .-..|..+|.+.|+.++.+..+.++.+....++..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 77766666666666677777777777777777766654432 33455566777777777777666666533222221
Q ss_pred hhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhh-CC-CCChhHHHHHHHHHH--
Q 043955 464 TLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNC-VQ-TKDLILWTSMINANG-- 539 (835)
Q Consensus 464 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~-~~-~~~~~~~~~li~~~~-- 539 (835)
..+-+.-....-.+.|.....+ +. +|+...+..+|..-.
T Consensus 286 -------------------------------------l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 286 -------------------------------------LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred -------------------------------------HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 1111222222333444443332 22 466667777776543
Q ss_pred -hcCChHHHHHHHHHHHHCCC
Q 043955 540 -LHGRGKVAIDLFYKMEAESF 559 (835)
Q Consensus 540 -~~g~~~~Al~l~~~m~~~g~ 559 (835)
.-|.+.+.+.+++.|..+.+
T Consensus 329 aeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 329 AEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred ccccchhhhHHHHHHHHHHHH
Confidence 34567888888888876543
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=7.1e-07 Score=87.99 Aligned_cols=444 Identities=14% Similarity=0.082 Sum_probs=225.3
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 043955 70 MLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQCLEALGL 147 (835)
Q Consensus 70 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~~~~A~~l 147 (835)
..+++..|..+++.-...+-+....+--=+...|.+.|++++|..++..+ ...++...|-.|...+.-.|.+.+|..+
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 34455555555544433222211111112233455667777777777655 2225555666666666666666666665
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC--CC
Q 043955 148 FREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN--KD 225 (835)
Q Consensus 148 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d 225 (835)
-.+..+ ++..-..++...-+.++-+.-..+|+.+...- .-.-+|..+.--.-.+.+|.+++.++.. |+
T Consensus 114 ~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 114 AEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 444321 22333334444455666666666666554321 1112333333333457888888888765 44
Q ss_pred cccHHHHH-HHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc--cCChHhHHHHHHHHHHhCCCccccccchh
Q 043955 226 SVSWNSML-TGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGR--LGNLLNGKELHAYAIKQGFVSDLQIGNTL 302 (835)
Q Consensus 226 ~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 302 (835)
-...|.-+ -+|.+..-++-+.+++.--.+. -||. |+..=+.+|.. .=+-..+.+-...+.+.+-..-++.--.+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 44555443 4567777777777777766653 4443 44444455533 22222333333333333211111100000
Q ss_pred hhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-----hccccC
Q 043955 303 MDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA-----CSGLKC 377 (835)
Q Consensus 303 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-----~~~~~~ 377 (835)
-.-+.-...-+.|.+++-.+...-+..--.++--|.+.++.++|..+.+++.- ..|-.+....+..+ ......
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 00111112334555555443332222333445557888999999988877642 33444444333332 223334
Q ss_pred chHHHHHHHHHHHhCCC-chh-HHHHHHHHHHhcCChhhHHHHHHhcCC----CCchhHHHHHHHHHhCCChHHHHHHHH
Q 043955 378 MSQTKEIHGYIIRKGLS-DLV-ILNAIVDVYGKCGNIDYSRNVFESIES----KDVVSWTSMISSYVHNGLANEALELFY 451 (835)
Q Consensus 378 ~~~~~~i~~~~~~~~~~-~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~Al~lf~ 451 (835)
+..|.+.+..+-.++.. |+. -..++...+.-..++|+....+..+.. .|...+| +..+++..|++.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHh
Confidence 55666777666666654 322 556666666666667776666665543 3444443 5667777777777777776
Q ss_pred HHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC-ChhH
Q 043955 452 LMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK-DLIL 530 (835)
Q Consensus 452 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~ 530 (835)
+.....+ -|..+|.++|. ..|.++|.++.|+.+|-++..+ +..+
T Consensus 418 ~is~~~i-kn~~~Y~s~LA----------------------------------rCyi~nkkP~lAW~~~lk~~t~~e~fs 462 (557)
T KOG3785|consen 418 RISGPEI-KNKILYKSMLA----------------------------------RCYIRNKKPQLAWDMMLKTNTPSERFS 462 (557)
T ss_pred hhcChhh-hhhHHHHHHHH----------------------------------HHHHhcCCchHHHHHHHhcCCchhHHH
Confidence 6543222 34455544443 3366677777777766665544 2223
Q ss_pred HHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043955 531 WTS-MINANGLHGRGKVAIDLFYKMEAESFAPDHITF 566 (835)
Q Consensus 531 ~~~-li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~ 566 (835)
.-. +..-|-+.+.+--|-+.|+.+.. ..|+...|
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 222 22334455555555555555554 34444444
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=6.4e-05 Score=84.03 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCC-CCCeeeHHHH-----HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 043955 96 VNSLVAMYAKCYDFRKARQLFDRMGE-KEDVVLWNSI-----ISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQA 169 (835)
Q Consensus 96 ~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~n~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 169 (835)
+..+.+.+.+.|-...|++.+.++.. ++.+ ..+.+ +..|.-.-.++++++.++.|...+++.|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~v-Vhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVV-VHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHH-HHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56677888899999999998887732 1222 22222 23455556788999999999999988887776666555
Q ss_pred hhcCCChhHHHHHHHHHHHh-----------CCCCchhHHHHHHHHHHhCCChhHHHHHHhcC
Q 043955 170 CEDSSFETLGMEIHAATVKS-----------GQNLQVYVANALIAMYARCGKMTEAAGVLYQL 221 (835)
Q Consensus 170 ~~~~~~~~~a~~l~~~~~~~-----------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 221 (835)
+...-..+...++|+..... .+..|+.+.-.-|.+-++.|++.+.+++.++-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 54443333344444433221 24556667778899999999999988887653
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=98.95 E-value=4.8e-08 Score=111.15 Aligned_cols=177 Identities=11% Similarity=-0.000 Sum_probs=139.8
Q ss_pred cCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHH
Q 043955 510 CGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKF 585 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~ 585 (835)
.|++++|...+++..+ .+...|..+...+...|++++|+..|++.++ ..|+. ..+..+..++...|+.++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567889999987664 4677899999999999999999999999998 57875 4577778889999999999999
Q ss_pred HHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcC
Q 043955 586 LEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELD 661 (835)
Q Consensus 586 ~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 661 (835)
++... .+.|+ ...+..+..++...|++++|++.+++. ...|+ +..+..+..++...|+.+.|+..++++....
T Consensus 395 ~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 99887 56775 333344555677789999999999876 22354 4456666666778899999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 662 PGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 662 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|++......|+..|...| ++|....+.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 988888888888888888 477665444443
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=5.2e-08 Score=90.95 Aligned_cols=162 Identities=15% Similarity=0.039 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVD 607 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~ 607 (835)
+...+.-+|.+.|+...|.+-+++.++ ..|+. -++..+...|...|..+.|.+.|+... .+.| +.+..+..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 455677889999999999999999998 57776 578888888999999999999999776 7788 5788899999
Q ss_pred HHhhcCCHHHHHHHHHhC---CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH
Q 043955 608 LLGRANHLEEAYQFVRSM---QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m---~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 683 (835)
.|+..|++++|...|++. |.-|. +.+|..+.....+.|+.+.|+..+++.++++|+++.....+++.....|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999887 54443 34788887777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 043955 684 VEQVRMRMRGSGL 696 (835)
Q Consensus 684 a~~~~~~m~~~~~ 696 (835)
|.-..+....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9998887776653
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.91 E-value=6.4e-06 Score=88.49 Aligned_cols=460 Identities=15% Similarity=0.137 Sum_probs=226.7
Q ss_pred hcCChHHHHHHHhhcCCCCCee-eHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHH
Q 043955 105 KCYDFRKARQLFDRMGEKEDVV-LWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIH 183 (835)
Q Consensus 105 ~~g~~~~A~~~f~~m~~~~~~~-~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~ 183 (835)
..|+++.|..+++.....|+.. .|-.+.......|+.--|.+.|..+ |+...++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai----------------------~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI----------------------GDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH----------------------HHHHHHHHHH
Confidence 4577788887777664434443 4666666666666665555554433 3344444444
Q ss_pred HHHH-------HhCCC-CchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 043955 184 AATV-------KSGQN-LQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGA 255 (835)
Q Consensus 184 ~~~~-------~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (835)
+... ..|-+ .+-+-..+++.+.. ..+.+|+.+|-+-. + -..-|..|....+|++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 4332 12222 22222333443332 34667777764311 1 123344555556677776664322
Q ss_pred CCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhc--CCCCcccHHHH
Q 043955 256 GQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQM--TAQDFISWTTI 333 (835)
Q Consensus 256 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~~l 333 (835)
|.+.-...-.+-+.++...|+-+.|-++ ..+..-.-+-|..|.|.|.+..|.+.-..- ...|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 1111111222334444444544443322 112222335577888888887776654221 11243344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchh--HHHHHHHHHHhcCC
Q 043955 334 IAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLV--ILNAIVDVYGKCGN 411 (835)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~li~~y~k~g~ 411 (835)
..++.+...+++|-.+|+++.. || ..+..+-+-..+..+.++- +..+|..+ .-.+..+-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d----~d-----kale~fkkgdaf~kaiela----rfafp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGDAFGKAIELA----RFAFPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHcccHHHHHHHHH----HhhCcHHHhhHHHHHhHHHHHHHh
Confidence 5555555556666666655532 11 1111111111222222221 12233221 33344444556667
Q ss_pred hhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHh
Q 043955 412 IDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRK 491 (835)
Q Consensus 412 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 491 (835)
++.|..-|-+.. ..-.-|.+-.....+.+|+.+++.++.... -.--|.-+..-+++.|+++.|.+++...
T Consensus 722 ~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 777766664331 111223445566777777777777766432 2233555666677777777777666432
Q ss_pred CCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043955 492 GFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK--DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLAL 569 (835)
Q Consensus 492 g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~l 569 (835)
..++--|+||.+.|++++|.++-.+...| ..++|-+-..-+-.||++.+|.++|-... .||. .
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----a 856 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----A 856 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----H
Confidence 22345567777777777777766665544 33455555555666777777766664432 3443 2
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhH
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKEL 649 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~ 649 (835)
+..|-+.|+.++-+++.+.-- | +--.++.-.+..-|...|++.+|++-+-+.+ -|.+-.+.++..+-.+.
T Consensus 857 iqmydk~~~~ddmirlv~k~h---~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHH---G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWED 926 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhC---h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHH
Confidence 334556666666665554221 1 0012333344555666666666666554432 24444444444444444
Q ss_pred HHHH
Q 043955 650 GEIV 653 (835)
Q Consensus 650 a~~~ 653 (835)
|.++
T Consensus 927 ayri 930 (1636)
T KOG3616|consen 927 AYRI 930 (1636)
T ss_pred HHHH
Confidence 4333
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=9.4e-07 Score=91.07 Aligned_cols=213 Identities=10% Similarity=-0.029 Sum_probs=122.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHH
Q 043955 338 AQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRN 417 (835)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 417 (835)
.-.|+.-+|...|+..+.....++.. |..+-.++....+.+.....+....+..+.+..+|..-..++.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34577777777777777665444442 55555567777777888888888888887777777777777878888888888
Q ss_pred HHHhcCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCC
Q 043955 418 VFESIESK---DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFN 494 (835)
Q Consensus 418 ~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 494 (835)
=|++...- ++.+|--+--+..+.+++++++..|++..+. ++--+..|+..-......++++.|.+.++..++..-.
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 88776653 3344444444444566777778888777653 2333344555555555566666666555555543211
Q ss_pred -------CchhHHHHHHHHHHhcCChhhHHHHhhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 495 -------LEGSVASSLVDMYARCGALDIANKVFNCVQTKDL---ILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 495 -------~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
+.+.+.-+++-.--+ +++..|..+.++..+-|+ ..+-+|...-.+.|+.++|+++|++
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 122222233222222 444444444444333222 2344444444444444444444444
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1e-05 Score=85.71 Aligned_cols=362 Identities=13% Similarity=0.106 Sum_probs=211.1
Q ss_pred ccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhccccCchHHHHHHH
Q 043955 308 KCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSGLKCMSQTKEIHG 386 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~ 386 (835)
+.+.+|+|...++.....|......-...+.+.|++++|+.+|+.+.+.+..-- ...-..++.+-.. .-.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---------l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---------LQV 161 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------hhH
Confidence 668888888888866555554555556677889999999999999987764332 2222222222111 111
Q ss_pred HHHHhC---CCchh-HHHHHHHHHHhcCChhhHHHHHHhc--------CCCC-----chhH-----HHHHHHHHhCCChH
Q 043955 387 YIIRKG---LSDLV-ILNAIVDVYGKCGNIDYSRNVFESI--------ESKD-----VVSW-----TSMISSYVHNGLAN 444 (835)
Q Consensus 387 ~~~~~~---~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~--------~~~~-----~~~~-----~~li~~~~~~g~~~ 444 (835)
...+.. +.++. .+-...-.++..|++.+|+++++.. .+.| +..= --|.-.+...|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 112221 22333 3344456677889999999998876 1111 1111 11333556789999
Q ss_pred HHHHHHHHHhhcCCcCChhhhHhHH---HHhhcccchhhH------HHHHH-------HHHHhCCCCchhHHHHHHHHHH
Q 043955 445 EALELFYLMNEANVESDSITLVSAL---SAASSLSILKKG------KELNG-------FIIRKGFNLEGSVASSLVDMYA 508 (835)
Q Consensus 445 ~Al~lf~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a------~~i~~-------~~~~~g~~~~~~~~~~li~~y~ 508 (835)
+|.+++...++.. .+|+....... .+...-.++-.+ +..+. ......-.....-.++|+.||.
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998864 34543222211 122222222111 00100 0000111112333467777776
Q ss_pred hcCChhhHHHHhhhCCCCC-hhHHHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcccCcHHHHH
Q 043955 509 RCGALDIANKVFNCVQTKD-LILWTSMI-NANG-LHGRGKVAIDLFYKMEAESFAPDHI--TFLALLYACSHSGLINEGK 583 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~~~-~~~~~~li-~~~~-~~g~~~~Al~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~ 583 (835)
. .-+.+++.-...+..- ...+.+++ .++- +.....+|.+++...-+ -.|+.. .....+.--...|+++.|.
T Consensus 321 n--k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 321 N--KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred h--hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 4 4456667666666432 22333333 3332 22357778888777766 356653 3334444567889999999
Q ss_pred HHHH--------HhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHhhcCc
Q 043955 584 KFLE--------IMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--------QIEPTA-EVWCALLGACRVHSN 646 (835)
Q Consensus 584 ~~~~--------~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~ll~a~~~~~~ 646 (835)
+++. +.. .+.-.+.+-+.++.++.+.+.-+-|-+++.+. +-.+.- .+|.-+..--..||+
T Consensus 397 ~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 397 EILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9888 433 22223556677889998888655444444333 333322 245555555667899
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
.+.|...++++++.+|++....+.|.-.|+... -+.|..+
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 999999999999999999999999998888654 3444443
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=9.8e-08 Score=93.00 Aligned_cols=225 Identities=10% Similarity=0.032 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES--KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSL 475 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~ 475 (835)
--+.+..+|.+.|.+.+|.+.|+.-.+ |-+.+|--|-..|.+-.+++.|+.+|.+-++ ..|-.+||.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l--------- 293 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYL--------- 293 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhh---------
Confidence 445677777777777777777765542 5566666666777777777777777776655 356555551
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 476 SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
.-....+-..++.++ |+++|++..
T Consensus 294 -------------------------~g~ARi~eam~~~~~-------------------------------a~~lYk~vl 317 (478)
T KOG1129|consen 294 -------------------------LGQARIHEAMEQQED-------------------------------ALQLYKLVL 317 (478)
T ss_pred -------------------------hhhHHHHHHHHhHHH-------------------------------HHHHHHHHH
Confidence 111222333344444 444444444
Q ss_pred HCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC-
Q 043955 556 AESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM---QIEPT- 630 (835)
Q Consensus 556 ~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~- 630 (835)
+ ..|+.+ ...++...+...++.|-|+.+++++.+- |+. +++.|..+.-++.-++++|-++.-|++. .-.|+
T Consensus 318 k--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~ 393 (478)
T KOG1129|consen 318 K--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ 393 (478)
T ss_pred h--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch
Confidence 4 233332 2233333444444555555555444422 221 3344444444444555555555555444 12243
Q ss_pred -HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 631 -AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 631 -~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.+|-.|......-||+..|.+.++-++..+|++..+|+.|+-+-++.|+.++|+.+....++
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 348999988888889999999999999999999999999999999999999999999887776
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=4e-05 Score=85.84 Aligned_cols=647 Identities=13% Similarity=0.046 Sum_probs=334.7
Q ss_pred hHhHHHHHHhcCCCCc---chHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHH
Q 043955 8 VLDAEQLFDKVSQRTV---FTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLV 84 (835)
Q Consensus 8 ~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~ 84 (835)
...|...|-+..+.|+ ..|..|-..|....+...|...|+...+.. ..+..........++...+++.|..+ .+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I--~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI--CL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH--HH
Confidence 4455555555544433 468888888887778888888888877643 33445667777888888899888887 22
Q ss_pred HHhCCCCC---cchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 043955 85 LKCGYDST---DFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTN 159 (835)
Q Consensus 85 ~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 159 (835)
......|- ..-|-.+--.|.+.++...|..-|+.. -.+.|..+|..+..+|.+.|.+..|+++|.+.... .|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 21111111 111222233466778888888888876 23358889999999999999999999999988763 454
Q ss_pred hhhHHHHHHH--hhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------CCChhHHHHHHhcCCCCCcccHH
Q 043955 160 AYTFVAALQA--CEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYAR-------CGKMTEAAGVLYQLENKDSVSWN 230 (835)
Q Consensus 160 ~~t~~~ll~a--~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~~A~~~f~~~~~~d~~~~~ 230 (835)
. +|...-.+ -+..|.+.++...++.++..-- ......+.|...+.+ .|-...|...|+.-. ..+.
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s-~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~ 702 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFS-LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFI 702 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHH
Confidence 3 33333333 3456788888877777664310 011111222222222 233333333333211 1111
Q ss_pred H-HHHHHHcCC----ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh---H---hHHHHHHHHHHhCCCcccccc
Q 043955 231 S-MLTGFVQND----LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNL---L---NGKELHAYAIKQGFVSDLQIG 299 (835)
Q Consensus 231 ~-li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~g~~~~~~~~ 299 (835)
. ++...+... -...|..+|-.... . .|+......+..-....+.. + .|-+.+. ....+..+...|
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchH
Confidence 1 111111100 01223333333220 0 22222222222212222222 1 1111111 111112223333
Q ss_pred chhhhhhhc----cC----ChhHHHHHHHhcC---CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 043955 300 NTLMDMYAK----CC----CVNYMGRVFYQMT---AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSV 368 (835)
Q Consensus 300 ~~Li~~y~~----~g----~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 368 (835)
..|...|.+ +| +...|...+.+.. ..+...||+|--. ...|.+.-|...|-+-... .+....+|..+
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~Nl 856 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNL 856 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheecc
Confidence 333333322 11 2234555555433 3466677776544 5556666666666554433 23344566666
Q ss_pred HHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC--------CCCchhHHHHHHHHHhC
Q 043955 369 LMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE--------SKDVVSWTSMISSYVHN 440 (835)
Q Consensus 369 l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~ 440 (835)
--.|....+.+.+.+.+..+....+.+...+-...-.-...|+.-++..+|.--. .++..-|-.-..-..++
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 6667777788888888887777777666544444444456666666666665421 13444454444455667
Q ss_pred CChHHHHHHHHHHhh---------cCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH-hCCCCchhHHH----HHHHH
Q 043955 441 GLANEALELFYLMNE---------ANVESDSITLVSALSAASSLSILKKGKELNGFIIR-KGFNLEGSVAS----SLVDM 506 (835)
Q Consensus 441 g~~~~Al~lf~~m~~---------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~----~li~~ 506 (835)
|+.++-+..-+..-. .|..-+.+.|.......-+++..+.+.....+.+. .....|...+| -+...
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL 1016 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRL 1016 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 776655544333321 12333445555555555555555555444443322 01112223333 34445
Q ss_pred HHhcCChhhHHHHhhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHhcccCcHHHHH
Q 043955 507 YARCGALDIANKVFNCVQT-KDLILWTSMINANGLHGRGKVAIDLFYKMEAES-FAPDH-ITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd~-~t~~~ll~a~~~~g~~~~a~ 583 (835)
+...|.++.|...+..... -|..+-..-+.. -..|+++++++.|++...-- -.-|. +....++.+-..++.-+.|+
T Consensus 1017 ~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~ 1095 (1238)
T KOG1127|consen 1017 ELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQ 1095 (1238)
T ss_pred hhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHH
Confidence 5666777777777665542 122222222222 34678999999999988621 12232 23444555556677777777
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHH-------hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHH
Q 043955 584 KFLEIMRCDYQLDPWPEHYACLVDLL-------GRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKK 656 (835)
Q Consensus 584 ~~~~~m~~~~~i~p~~~~y~~lv~~l-------~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 656 (835)
..+-..... -.|+....-++.-++ +-.+-++|=..+++.=.+--++.....+ .+..+|+-.......++
T Consensus 1096 ~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~qr 1171 (1238)
T KOG1127|consen 1096 FLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQR 1171 (1238)
T ss_pred HHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHHH
Confidence 655443321 123444433332222 2222233322222211111112212222 24567888889999999
Q ss_pred HHhcCCCCCCchHHHHHHHH
Q 043955 657 LLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 657 ~~~l~p~~~~~~~~l~~~y~ 676 (835)
..-..|.|+..|.+|++=|+
T Consensus 1172 ~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1172 AVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHhcCCCChHHHHHHHHHHH
Confidence 99999999999999986554
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.80 E-value=6.6e-07 Score=93.08 Aligned_cols=204 Identities=15% Similarity=0.028 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMY 507 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 507 (835)
..|..+...|.+.|+.++|...|++..+ ..|+ +...++.+...|
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~----------------------------------~~~a~~~lg~~~ 108 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALA--LRPD----------------------------------MADAYNYLGIYL 108 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC----------------------------------CHHHHHHHHHHH
Confidence 3466666667777777777777777665 2343 345677888888
Q ss_pred HhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 043955 508 ARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKK 584 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 584 (835)
...|++++|...|++..+ .+..+|..+...+...|++++|++.|++..+ ..|+.......+..+...++.++|..
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKE 186 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHH
Confidence 899999999999987753 3567888899999999999999999999988 56765422222223445678999999
Q ss_pred HHHHhhhcCCCCCChhHHHHHHHHHhhcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHhhcCchhHHHHHHHH
Q 043955 585 FLEIMRCDYQLDPWPEHYACLVDLLGRANHL--EEAYQFVRSM-Q----IEP-TAEVWCALLGACRVHSNKELGEIVAKK 656 (835)
Q Consensus 585 ~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~--~eA~~~~~~m-~----~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 656 (835)
.|...... ..|+...+ .++..+ .|++ +++.+.+.+. + ..| ....|..|...+...|+.+.|+..+++
T Consensus 187 ~l~~~~~~--~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 187 NLKQRYEK--LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHhh--CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99765422 23332222 333333 3444 3333333321 1 122 234788899999999999999999999
Q ss_pred HHhcCCC-CCCchHHHHHH
Q 043955 657 LLELDPG-NPGNYVLISNV 674 (835)
Q Consensus 657 ~~~l~p~-~~~~~~~l~~~ 674 (835)
+++++|. ...+-..+..+
T Consensus 262 Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 262 ALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHhCCchHHHHHHHHHHH
Confidence 9999974 44444444443
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.2e-05 Score=79.60 Aligned_cols=409 Identities=14% Similarity=0.075 Sum_probs=192.4
Q ss_pred HHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCC
Q 043955 201 LIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQ-VCTVNAVSASGRLGN 276 (835)
Q Consensus 201 li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~ 276 (835)
+...|.+.|++++|..++..+.+ ++...|-.+...+.-.|.+.+|..+-... |+. -.-..++...-+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCc
Confidence 34455566666666666655543 23344444444444455566665554332 222 223334444445566
Q ss_pred hHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCC--CcccHHH-HHHHHHhcCChHHHHHHHHHH
Q 043955 277 LLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ--DFISWTT-IIAGYAQNNCHLKALELFRTV 353 (835)
Q Consensus 277 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m 353 (835)
-+.-.++|..+...- .-.-+|..+.--.-.+.+|..++.++... +-...|. |.-+|.+...++-+.+++.--
T Consensus 137 Ek~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 555555555543321 11122222222223455666666665443 2333333 233455556666665555554
Q ss_pred HHcCCCCChhHHHHHHHHhcc--ccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhc-----CChhhHHHHHHhcCCCC
Q 043955 354 QLEGLDADVMIIGSVLMACSG--LKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKC-----GNIDYSRNVFESIESKD 426 (835)
Q Consensus 354 ~~~g~~p~~~t~~~ll~a~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~f~~~~~~~ 426 (835)
++. -||+ |+..=|.+|.. .=+-..+.+-...+...+-..-. .+.-.++. ..-+.|.+++-.+...=
T Consensus 212 L~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~----f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 212 LRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP----FIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred HHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch----hHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 443 2333 23333333322 21222222222222222211100 11111111 12234444433222211
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhh-----cccchhhHHHHHHHHHHhCCCCchhHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAAS-----SLSILKKGKELNGFIIRKGFNLEGSVAS 501 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 501 (835)
+..--.++--|.+.++..+|..+..++.- ..|-++..-.+..+-. +-..++-|.+.+..+-.++..-|
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD----- 357 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD----- 357 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc-----
Confidence 12222344456778888888887766532 2333333322222211 11122333333333333333222
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINE 581 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 581 (835)
.+..-.+|.+.+--..++++.+-.++....- +..|.+--..+..|....|.+.+
T Consensus 358 -------------------------TIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 358 -------------------------TIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred -------------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHH
Confidence 2233445555555555666666666665553 22333333345666777777777
Q ss_pred HHHHHHHhhhcCCCCC-ChhHHH-HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHhhcCchhHHHHHHHHHH
Q 043955 582 GKKFLEIMRCDYQLDP-WPEHYA-CLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALL-GACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p-~~~~y~-~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll-~a~~~~~~~~~a~~~~~~~~ 658 (835)
|.++|-.+. +.+. +-..|. .+..+|.+.|+.+-|.+++-++.-..+..+.--|+ .-|.+.+.+=-|-+++..+-
T Consensus 412 aEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777776554 2221 223333 34456777777777877777775444444433333 56888888888888888887
Q ss_pred hcCCC
Q 043955 659 ELDPG 663 (835)
Q Consensus 659 ~l~p~ 663 (835)
.+||.
T Consensus 489 ~lDP~ 493 (557)
T KOG3785|consen 489 ILDPT 493 (557)
T ss_pred ccCCC
Confidence 88874
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.9e-05 Score=84.87 Aligned_cols=241 Identities=13% Similarity=0.056 Sum_probs=153.4
Q ss_pred CCCCCChHhHHHHHHhcCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC-C--------CCCCCccHHHHHHHHhccC
Q 043955 2 YGKCGSVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVL-G--------ISVDAFTFPCVIKACAMLK 72 (835)
Q Consensus 2 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~~~~~~~~~ll~~~~~~~ 72 (835)
|.--|+.+.|.+....+. +-..|..|.+.|.+..+.+-|.-.+-.|... | -.|+ .+=..+.-.....|
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 445688888876655544 3457999999999999888887777666431 1 1222 33333334445778
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHH
Q 043955 73 DLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQ 152 (835)
Q Consensus 73 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 152 (835)
.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..-.=..||.....-+-..++.+.|++.|++-.
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 899999998877653 34455677889999999887643110112355555555566788888888876532
Q ss_pred ----------HCCC---------CCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 043955 153 ----------RVGL---------VTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTE 213 (835)
Q Consensus 153 ----------~~g~---------~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 213 (835)
.... .-|...|...-.-+-..|+.+.|..++..... |-+++...+-.|++++
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 1110 11233333333344455666666666554432 3456666667788888
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 043955 214 AAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRL 274 (835)
Q Consensus 214 A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 274 (835)
|-++-++- .|......+.+.|-..|++.+|..+|.+.+ +|...|+.|-..
T Consensus 957 Aa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEn 1006 (1416)
T KOG3617|consen 957 AARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEN 1006 (1416)
T ss_pred HHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhc
Confidence 87776653 466667778888889999999999998775 466666666443
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.77 E-value=9.3e-05 Score=83.08 Aligned_cols=369 Identities=14% Similarity=0.052 Sum_probs=209.2
Q ss_pred HHHHHHHHhCCCCCc-chHHHHHHHHHhcCChHHHHHHHhhcC--CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 043955 79 KIHGLVLKCGYDSTD-FIVNSLVAMYAKCYDFRKARQLFDRMG--EKEDVVLWNSIISAYSASGQCLEALGLFREMQRVG 155 (835)
Q Consensus 79 ~i~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 155 (835)
.++..+....+.++- ..|..|-..|...-+...|.+.|+..- ..-|..+|......|++..+++.|..+.-.--+.
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk- 555 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK- 555 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-
Confidence 333333333333432 467888888888778889999998872 2246788999999999999999999883332221
Q ss_pred CCC-ChhhHHHHHH--HhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHH
Q 043955 156 LVT-NAYTFVAALQ--ACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSM 232 (835)
Q Consensus 156 ~~p-~~~t~~~ll~--a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~l 232 (835)
.| -...++.+-+ .+-..++...+..-+....+..+ .|...|..|..+|.++|++..|.++|++...-++.+|-..
T Consensus 556 -a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 556 -APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred -chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 11 1111111112 23344455555555554444332 2777899999999999999999999988877555544332
Q ss_pred H---HHHHcCCChhHHHHHHHHHHHC------CCCCCcchHHHHHHHHhccCC-------hHhHHHHHHHHHHhCCCccc
Q 043955 233 L---TGFVQNDLYCKAMQFFRELQGA------GQKPDQVCTVNAVSASGRLGN-------LLNGKELHAYAIKQGFVSDL 296 (835)
Q Consensus 233 i---~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~~~~-------~~~a~~i~~~~~~~g~~~~~ 296 (835)
. ..-+..|.+.+|++.+...... +..--..++..+...+...|- ++...+.+.-.+......+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 2 2345678888888888766432 111111233333333322222 22223333322222211111
Q ss_pred cccc-------------------hhhhhhhc----cCCh---h---HHHHHHHhcC--CCCcccHHHHHHHHHh----c-
Q 043955 297 QIGN-------------------TLMDMYAK----CCCV---N---YMGRVFYQMT--AQDFISWTTIIAGYAQ----N- 340 (835)
Q Consensus 297 ~~~~-------------------~Li~~y~~----~g~~---~---~A~~~f~~m~--~~~~~~~~~li~~~~~----~- 340 (835)
..|- .++..+.+ .+.. | -+.+.+-.-. .-+..+|..++..|.+ .
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC
Confidence 1111 11111111 1111 1 0111110000 0145677777665554 1
Q ss_pred ---CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHH
Q 043955 341 ---NCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRN 417 (835)
Q Consensus 341 ---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 417 (835)
.+...|+..+.+-.+. ..+...+-..|...+..|++..+...+-......+....+|..+.-.+.+..+++.|..
T Consensus 794 et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred CcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhH
Confidence 1234567777666553 44555555556666555665555444444444444556688888888888899999999
Q ss_pred HHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHH
Q 043955 418 VFESIES---KDVVSWTSMISSYVHNGLANEALELFYL 452 (835)
Q Consensus 418 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~ 452 (835)
.|..... .|.+.|-.+.-.....|+.-+++.+|..
T Consensus 872 af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9987764 3677887776666778888888888876
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.76 E-value=3.8e-06 Score=91.21 Aligned_cols=234 Identities=18% Similarity=0.171 Sum_probs=137.4
Q ss_pred HHHHHHhccccCchHHHHHHHHHHHh-----CC--Cchh-HHHHHHHHHHhcCChhhHHHHHHhcCC-------C----C
Q 043955 366 GSVLMACSGLKCMSQTKEIHGYIIRK-----GL--SDLV-ILNAIVDVYGKCGNIDYSRNVFESIES-------K----D 426 (835)
Q Consensus 366 ~~ll~a~~~~~~~~~~~~i~~~~~~~-----~~--~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~-------~----~ 426 (835)
..+-..|...|+++.|.+++...++. |. +... ..+.+..+|...+++++|..+|+++.. + -
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33444455555555555555554443 22 2222 556788899999999999999887642 2 1
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchh---HHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGS---VASSL 503 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~---~~~~l 503 (835)
..+++.|...|.+.|++++|...+++..+- ... ..| .+... ..+.+
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~--~~~-~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEK--LLG-ASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHH--hhc-cChHHHHHHHHHH
Confidence 245666777888889999988888776541 000 000 11111 12344
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLI 579 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~ 579 (835)
...+...+++++|..++.. |++++.. -+.++. -++..+...+.+.|.+
T Consensus 332 ~~~~~~~~~~Eea~~l~q~------------------------al~i~~~----~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQK------------------------ALKIYLD----APGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred HHHHHHhcchhHHHHHHHH------------------------HHHHHHh----hccccchHHHHHHHHHHHHHHHhcch
Confidence 4455555666666655542 1222221 122333 2455566666666666
Q ss_pred HHHHHHHHHhhhcC-----CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHhhc
Q 043955 580 NEGKKFLEIMRCDY-----QLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--------QIEPTAE-VWCALLGACRVH 644 (835)
Q Consensus 580 ~~a~~~~~~m~~~~-----~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~~-~~~~ll~a~~~~ 644 (835)
+||.++|++..+.. +..+. ..+++.|...+.+.++.++|.+++.+. |--|+.. ++..|...|+..
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 66666666554321 22332 456667777777777777777666554 4455554 788888888888
Q ss_pred CchhHHHHHHHHHH
Q 043955 645 SNKELGEIVAKKLL 658 (835)
Q Consensus 645 ~~~~~a~~~~~~~~ 658 (835)
||.|.|+...++++
T Consensus 464 g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 464 GNYEAAEELEEKVL 477 (508)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888888888877
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=4.8e-05 Score=80.78 Aligned_cols=301 Identities=14% Similarity=0.108 Sum_probs=151.2
Q ss_pred hCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHhHHHHHH
Q 043955 207 RCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKP-DQVCTVNAVSASGRLGNLLNGKELHA 285 (835)
Q Consensus 207 ~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~ 285 (835)
+.+..++|...++.....|..+...-...+-+.|++++|+++|+.+...+..- |...-..++.+-+... + .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~----~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ----V----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh----H----H
Confidence 45666777666664443343343334445566677777777777775543221 1111111111111100 0 0
Q ss_pred HHHHhCCCccccccchh---hhhhhccCChhHHHHHHHhc--------CCCCcc----------cHHHHHHHHHhcCChH
Q 043955 286 YAIKQGFVSDLQIGNTL---MDMYAKCCCVNYMGRVFYQM--------TAQDFI----------SWTTIIAGYAQNNCHL 344 (835)
Q Consensus 286 ~~~~~g~~~~~~~~~~L---i~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~ 344 (835)
.+......| ..+|..+ ...+...|++..|+++++.. ...|.. .---|.-.+...|+-+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 011111111 1122222 22344556677777666655 111111 1123444567789999
Q ss_pred HHHHHHHHHHHcCCCCCh---hHHHHHHHHhccccCchHH------HHH--------HHHHHHhCCCchhHHHHHHHHHH
Q 043955 345 KALELFRTVQLEGLDADV---MIIGSVLMACSGLKCMSQT------KEI--------HGYIIRKGLSDLVILNAIVDVYG 407 (835)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~~~~~~~------~~i--------~~~~~~~~~~~~~~~~~li~~y~ 407 (835)
+|.+++...++... +|. .++..=|.+...-.++..+ +.. ...+.+........-+.|+.+|.
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888753 333 2222223333333332221 111 11111111112224455666664
Q ss_pred hcCChhhHHHHHHhcCCCC-chhHHHHHHHHHh--CCChHHHHHHHHHHhhcCCcCCh--hhhHhHHHHhhcccchhhHH
Q 043955 408 KCGNIDYSRNVFESIESKD-VVSWTSMISSYVH--NGLANEALELFYLMNEANVESDS--ITLVSALSAASSLSILKKGK 482 (835)
Q Consensus 408 k~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~--~g~~~~Al~lf~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~ 482 (835)
+..+.++++-...+... ...+.+++....+ ...+..|.+++...-.. .|+. ......+.-....|+++.|.
T Consensus 321 --nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 321 --NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred --hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 45677888877777543 3344455444322 23466777777766553 3443 23333444456778888888
Q ss_pred HHHH--------HHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhC
Q 043955 483 ELNG--------FIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCV 523 (835)
Q Consensus 483 ~i~~--------~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 523 (835)
.++. .+.+.+.. +.+..+++.+|.+.++.+.|..++++.
T Consensus 397 ~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 8887 44444433 345577888888888888888887654
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=8.7e-06 Score=82.31 Aligned_cols=267 Identities=13% Similarity=0.078 Sum_probs=128.7
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHH-HhhcccchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALS-AASSLSILKKGKELNGFIIRKGFNLEGSVASSLV 504 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 504 (835)
|+....++...+...|+..+|...|.+.+. +.|+.++-.-+-. -....|+++....+..++...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~------------- 295 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK------------- 295 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-------------
Confidence 566677777888888888888888887765 4454433110000 011222333222222222111
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGK 583 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 583 (835)
.+.....|-.-....-..++++.|+.+-++-++ +.|+.+ .+..-..++...|++++|.
T Consensus 296 -------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 296 -------------------VKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred -------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHH
Confidence 011222333333333445556666666655555 344442 3444444555566666666
Q ss_pred HHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHH----HhCCCCCCHHHHHHHHHH--Hhh-cCchhHHHHHHH
Q 043955 584 KFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFV----RSMQIEPTAEVWCALLGA--CRV-HSNKELGEIVAK 655 (835)
Q Consensus 584 ~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~----~~m~~~p~~~~~~~ll~a--~~~-~~~~~~a~~~~~ 655 (835)
-.|+..+ .+.| +.+.|.-++..|...|++.||.-.- +.|| .++.+. +|+++ |.- -.--|.|+..++
T Consensus 355 IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~L-tL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 355 IAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSL-TLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhh-hhhcceeeccCchhHHHHHHHHH
Confidence 6666554 4555 4566666666666666666655332 2222 122222 22221 111 112255566666
Q ss_pred HHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCE-----------EEEEEeCCCCCcCc
Q 043955 656 KLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNK-----------IHSFIARDKSHSES 724 (835)
Q Consensus 656 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~-----------~~~f~~~d~~hp~~ 724 (835)
+.+.++|...++-+.++.++...|+++|+..+.+. .++-.|.|+.=.+-|+ .-.|...=+..|+.
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~----~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK----HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH----HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 66666666666666666666666666666555332 1122333332100000 00111112356788
Q ss_pred HHHHHHHHHHHHHh
Q 043955 725 DEIYKKLAEITEKL 738 (835)
Q Consensus 725 ~~i~~~l~~l~~~~ 738 (835)
+.-.+-|+.|++++
T Consensus 505 ~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 505 KRTLRGLRLLEKSD 518 (564)
T ss_pred hHHHHHHHHHHhcc
Confidence 77777788777666
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=8.2e-07 Score=86.74 Aligned_cols=228 Identities=10% Similarity=0.067 Sum_probs=140.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcC
Q 043955 331 TTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCG 410 (835)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g 410 (835)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-..||..+-.+|.+......|..+++..+..-+.+.....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 46778889999999999998887775 4555566666666666666666666666555554444444444444444444
Q ss_pred ChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHH
Q 043955 411 NIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGF 487 (835)
Q Consensus 411 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 487 (835)
+.++|.+++....+ .|+.+.-.+..+|.-.++++-|+..|+++++.|+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~----------------------------- 355 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA----------------------------- 355 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----------------------------
Confidence 44444444444332 1222333333344444444444444444444332
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--H
Q 043955 488 IIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI--T 565 (835)
Q Consensus 488 ~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~--t 565 (835)
.+...|+.+.-+|.-.++++-++.-|++.+..-..|+.. .
T Consensus 356 --------------------------------------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 356 --------------------------------------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred --------------------------------------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 133344455555556667777777777777665556653 4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT 630 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 630 (835)
|..+.......|+..-|.+.|+-.. .-+| ..+.|+.+.-+-.|.|++++|..+++.. ...|+
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL---~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLAL---TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHh---ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 6666666777888888888888655 2345 4778888888888999999999888876 34454
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=2.9e-07 Score=84.14 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=101.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 043955 548 IDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM- 625 (835)
Q Consensus 548 l~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 625 (835)
..+|++.++ +.|+. +.....++...|++++|..+|+... .+.| +...|..++.++.+.|++++|...+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356666666 56775 4456677889999999999999877 6678 5888899999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 626 QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 626 ~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...| ++..|..+..++...|+.+.|+..+++++++.|+++.++...+++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5566 56688888888889999999999999999999999999988887654
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.65 E-value=4.2e-06 Score=78.46 Aligned_cols=197 Identities=15% Similarity=0.128 Sum_probs=157.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 043955 431 TSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARC 510 (835)
Q Consensus 431 ~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 510 (835)
.-+.-+|.+.|++..|..-+++.++. .|+ +.-++..+...|.+.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs----------------------------------~~~a~~~~A~~Yq~~ 82 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPS----------------------------------YYLAHLVRAHYYQKL 82 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHHHHc
Confidence 44566899999999999999988873 344 234567778889999
Q ss_pred CChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHH
Q 043955 511 GALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFL 586 (835)
Q Consensus 511 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~ 586 (835)
|..+.|.+.|+... .++-...|....-++..|++++|...|++......-|.. .||..+.-+-.++|..+.|..+|
T Consensus 83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 83 GENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred CChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 99999999998755 457778899999999999999999999999975433332 57888887778999999999999
Q ss_pred HHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 587 EIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 587 ~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+... .+.|+ +.....|.+..-..|++-+|..+++.. ...+.+...--.+..-+..||.+.+-+.-.++..+-|.
T Consensus 163 ~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 163 KRAL---ELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHH---HhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9776 56774 778888999999999999999999887 34466665544555667789999998888888888887
Q ss_pred CCC
Q 043955 664 NPG 666 (835)
Q Consensus 664 ~~~ 666 (835)
...
T Consensus 240 s~e 242 (250)
T COG3063 240 SEE 242 (250)
T ss_pred cHH
Confidence 544
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=0.00018 Score=77.48 Aligned_cols=434 Identities=16% Similarity=0.125 Sum_probs=250.5
Q ss_pred CCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHH
Q 043955 173 SSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN---KDSVSWNSMLTGFVQNDLYCKAMQFF 249 (835)
Q Consensus 173 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~ 249 (835)
.+.+..+..+.+.+++ ++.....+....--.....|+.++|......-.. ++.+.|..+.-.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3444555555555554 2222222222222234456788888777765544 46678998888888888999999999
Q ss_pred HHHHHCCCCCCcch-HHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcc
Q 043955 250 RELQGAGQKPDQVC-TVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFI 328 (835)
Q Consensus 250 ~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~ 328 (835)
+.... +.||... +.-+--.-++.++++.........+ +.....-.
T Consensus 99 ~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL--------------------------------ql~~~~ra 144 (700)
T KOG1156|consen 99 RNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL--------------------------------QLRPSQRA 144 (700)
T ss_pred HHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH--------------------------------HhhhhhHH
Confidence 98876 3455432 1111111112222222211111111 11223456
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHH------hccccCchHHHHHHHHHHHhCCCchhHHHH
Q 043955 329 SWTTIIAGYAQNNCHLKALELFRTVQLEG-LDADVMIIGSVLMA------CSGLKCMSQTKEIHGYIIRKGLSDLVILNA 401 (835)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 401 (835)
+|..++-++.-.|+...|..+.....+.. -.|+...+...... ....|.++.+.+......+.-.+....-..
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 89999999999999999999999987765 35666666544333 344566666665555444443344446777
Q ss_pred HHHHHHhcCChhhHHHHHHhcCC--CCchhHHHHHH-HHHhCCChHHHH-HHHHHHhhcC---CcCChhhhHhHHHHhhc
Q 043955 402 IVDVYGKCGNIDYSRNVFESIES--KDVVSWTSMIS-SYVHNGLANEAL-ELFYLMNEAN---VESDSITLVSALSAASS 474 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~-~~~~~g~~~~Al-~lf~~m~~~g---~~p~~~t~~~ll~a~~~ 474 (835)
-.+.+.+.+++++|..++..+.. ||.+.|.-... ++.+-.+.-+++ .+|....+.- ..|-.... +++ ..
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl-svl---~~ 300 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL-SVL---NG 300 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH-HHh---Cc
Confidence 78899999999999999998876 55555555444 332344444555 5666554421 11211111 111 11
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChh---h-HHHHhhh--------------CCCCChhHHHH--H
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALD---I-ANKVFNC--------------VQTKDLILWTS--M 534 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~---~-A~~~f~~--------------~~~~~~~~~~~--l 534 (835)
..-.+....++....+.|+++ ++..+...|-.-...+ + +..+... ...|....|+. +
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 222233334455555566543 3333333332211111 0 1111111 12345566766 5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCC-CChhHHHHHHHHHhhc
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLD-PWPEHYACLVDLLGRA 612 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~-p~~~~y~~lv~~l~r~ 612 (835)
+..|-..|+++.|+...+.... -.|..+ -|..-..-+.|+|++++|..+++... +++ ||...=+--+.-+.|+
T Consensus 378 aqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~---elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ---ELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH---hccchhHHHHHHHHHHHHHc
Confidence 6778889999999999999987 478775 35566677899999999999999887 333 3433333456677899
Q ss_pred CCHHHHHHHHHhCCCCC-CH--------HHHHHHH--HHHhhcCchhHHHHH
Q 043955 613 NHLEEAYQFVRSMQIEP-TA--------EVWCALL--GACRVHSNKELGEIV 653 (835)
Q Consensus 613 g~~~eA~~~~~~m~~~p-~~--------~~~~~ll--~a~~~~~~~~~a~~~ 653 (835)
.+.++|.++.....-+- ++ -+|--+- .++..+|++.+|..=
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 99999999876652111 21 1354443 456777777666443
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.1e-06 Score=92.77 Aligned_cols=213 Identities=11% Similarity=0.049 Sum_probs=147.5
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDL 550 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l 550 (835)
+.|++..|.-.++..++.. +.+...|--|.-.-+..++-..|+..+.+..+ .|....-+|...|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455666666666655543 22345555555555555555556666655442 3555566666666666666677777
Q ss_pred HHHHHHCCCCCCHHHHHHH--------HHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 043955 551 FYKMEAESFAPDHITFLAL--------LYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFV 622 (835)
Q Consensus 551 ~~~m~~~g~~Pd~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~ 622 (835)
++.-+.. +|-.+-...- -....+......-.++|-.+....+..++++.+.+|+-+|--.|.+++|.+.|
T Consensus 376 L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7666542 2211100000 01112222344455566666555566678889999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 623 RSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 623 ~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+.+ ..+| |..+||-|........+.+.|+.+|.++++|.|........|+-.|...|.++||.+..-
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 988 8889 556899999999888999999999999999999999999999999999999999988753
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=3.1e-06 Score=86.71 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=96.4
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----ccCcH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACS----HSGLI 579 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~----~~g~~ 579 (835)
..+|...|++++|.+++... .+.......+..|.+.++.+.|.+.++.|.+ ...|.+ ..-+..|+. -...+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhH
Confidence 34566778888888777765 4555666677778888888888888888876 445543 222333221 12357
Q ss_pred HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCch-hHHHHHHHH
Q 043955 580 NEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNK-ELGEIVAKK 656 (835)
Q Consensus 580 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~-~~a~~~~~~ 656 (835)
.+|..+|+.+...+ .+++...+.+.-+....|+++||++++++. ...| |+.++-.++..+...|+. +.+.+...+
T Consensus 184 ~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 77888888776554 345666777777777777777777777665 4444 344555665555555655 566677777
Q ss_pred HHhcCCCC
Q 043955 657 LLELDPGN 664 (835)
Q Consensus 657 ~~~l~p~~ 664 (835)
+....|++
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 77777764
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=0.0017 Score=71.53 Aligned_cols=542 Identities=14% Similarity=0.110 Sum_probs=287.2
Q ss_pred CcchHHHHHH--HHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCCh
Q 043955 92 TDFIVNSLVA--MYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRV-G--------LVTNA 160 (835)
Q Consensus 92 ~~~~~~~Li~--~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~ 160 (835)
|..+..++++ .|..-|+.+.|.+-...+. +...|..|.+.+.+..+.+-|.-.+..|... | -.|+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 5556666665 4777899999888777663 4568999999999988888887776666431 1 1222
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCC-CcccHHHHHHHHHcC
Q 043955 161 YTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENK-DSVSWNSMLTGFVQN 239 (835)
Q Consensus 161 ~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-d~~~~~~li~~~~~~ 239 (835)
.+=.-+.-....+|.+++|+.++..-.+. ..|=..|-..|.+++|.++-+.-..- =..+|.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 22222222345678899999999888774 34556677889999998887653321 112444445555556
Q ss_pred CChhHHHHHHHHHH----------HCC---------CCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccc
Q 043955 240 DLYCKAMQFFRELQ----------GAG---------QKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN 300 (835)
Q Consensus 240 g~~~~A~~l~~~m~----------~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 300 (835)
++.+.|++.|++-. ... -..|...|.---......|+.+.|..++..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 77888888776532 111 011222222222333445666666666655443 44
Q ss_pred hhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchH
Q 043955 301 TLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQ 380 (835)
Q Consensus 301 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 380 (835)
+++...+-.|+.++|-++-++-. |.....-+...|-..|++.+|+.+|.+.+ +|...|+.|-..+--+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d- 1010 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKD- 1010 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHH-
Confidence 56677777788888888776543 55566678888999999999999998875 4566666654433222
Q ss_pred HHHHHHHHHHhCCCchh-----------HHHHHHHHHHhcCChhhHHHHHHhcCC--------------CCchhHHHHHH
Q 043955 381 TKEIHGYIIRKGLSDLV-----------ILNAIVDVYGKCGNIDYSRNVFESIES--------------KDVVSWTSMIS 435 (835)
Q Consensus 381 ~~~i~~~~~~~~~~~~~-----------~~~~li~~y~k~g~~~~A~~~f~~~~~--------------~~~~~~~~li~ 435 (835)
++.....-.+..+.. -...-+..|-|.|.+.+|.++--+-.+ .|+...+--..
T Consensus 1011 --~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1011 --RLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred --HHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 222222333322211 122345567777777777665322221 24444444444
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHh--CCCC---chhHHHHHHHHHHhc
Q 043955 436 SYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRK--GFNL---EGSVASSLVDMYARC 510 (835)
Q Consensus 436 ~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~---~~~~~~~li~~y~k~ 510 (835)
-|..+.++++|..++-..++ |...+.-|...+ ..-..++-+.|... +..+ -..+...+.+.+.+.
T Consensus 1089 FF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 55667777777777655443 222333332211 11112222222111 1111 123344455566666
Q ss_pred CChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHH----------------HHHHHHHHHH---CCCCCCHHHHHHHHH
Q 043955 511 GALDIANKVFNCVQTKDLILWTSMINANGLHGRGKV----------------AIDLFYKMEA---ESFAPDHITFLALLY 571 (835)
Q Consensus 511 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~----------------Al~l~~~m~~---~g~~Pd~~t~~~ll~ 571 (835)
|.+..|-+-|...-.+= .-+.++.+.|+.++ |-..++..-- ..+--|.+||..-..
T Consensus 1159 G~Yh~AtKKfTQAGdKl-----~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgq 1233 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQAGDKL-----SAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQ 1233 (1416)
T ss_pred cchHHHHHHHhhhhhHH-----HHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcch
Confidence 66666666554432210 01222233333221 1111111100 001123455555555
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-HHHHH----------HHH
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAE-VWCAL----------LGA 640 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~-~~~~l----------l~a 640 (835)
|+-+.+.+-.+.... .+++|...-.+ .|-++||.+.+.++..+.+.. .+++| |..
T Consensus 1234 afd~LanFY~~cAqi-----------Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~ 1299 (1416)
T KOG3617|consen 1234 AFDHLANFYKSCAQI-----------EIEELQTYDKA---MGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRK 1299 (1416)
T ss_pred hHHHHHHHHHHHHHh-----------hHHHHhhhhHH---hHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 544444333222211 12333222222 244666666666653333222 23332 333
Q ss_pred HhhcC-chhHHHHHHHHHHhcCCCCC------CchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCcee
Q 043955 641 CRVHS-NKELGEIVAKKLLELDPGNP------GNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSS 703 (835)
Q Consensus 641 ~~~~~-~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s 703 (835)
.++.+ |...+.+-.+-++ .+|..+ ..|-+|..-|....+|..|-+..+.|+. |.|-.+
T Consensus 1300 ~q~~~eD~~~~i~qc~~ll-eep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~----k~p~~~ 1364 (1416)
T KOG3617|consen 1300 LQIMKEDAADGIRQCTTLL-EEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQK----KVPNVD 1364 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHh-hCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh----cCCccc
Confidence 33332 3333333343333 355544 3477888999999999999999998886 556443
No 94
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=7.1e-06 Score=85.18 Aligned_cols=208 Identities=10% Similarity=0.072 Sum_probs=142.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043955 430 WTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYAR 509 (835)
Q Consensus 430 ~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 509 (835)
++.+-..+...++.++|+.+..+++. +.|+..|. ++.....+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yta----------------------------------W~~R~~iL~~ 83 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIR--LNPGNYTV----------------------------------WHFRRLCLEA 83 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH----------------------------------HHHHHHHHHH
Confidence 33344455566777788888777776 45554432 2222333334
Q ss_pred cC-ChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHH
Q 043955 510 CG-ALDIANKVFNCVQ---TKDLILWTSMINANGLHGRG--KVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEG 582 (835)
Q Consensus 510 ~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~--~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a 582 (835)
.| .+++++..++.+. .++..+|+.....+.+.|+. ++++.++++|++ ..|+ ..+|.....++.+.|+++++
T Consensus 84 L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 84 LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHH
Confidence 45 4677777777654 34566777666666666653 677888888887 5564 45777777788888889999
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC----chh
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLLGRA---NH----LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHS----NKE 648 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~---g~----~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~----~~~ 648 (835)
+++++.+. .++| +...|+....++.+. |. ++++.+++.++ ...| |...|+.+.+.+..++ +..
T Consensus 162 L~~~~~~I---~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 162 LEYCHQLL---EEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHH---HHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 99988887 4456 455666655555444 32 35677777555 6677 5569999999988743 346
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
.+.....++++.+|+++-+...|+.+|...
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 688888999999999999999999999863
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.51 E-value=8.9e-05 Score=81.77 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=95.1
Q ss_pred ChhHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHH
Q 043955 527 DLILW--TSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHY 602 (835)
Q Consensus 527 ~~~~~--~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y 602 (835)
....| .-+...|...|+.++|++..++.++ ..|..+ .|..-...+.|.|++++|.+.++..+ .+++ |...=
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiN 265 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYIN 265 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHH
Confidence 33345 4456778889999999999999998 578865 56677778999999999999999887 6666 44444
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC---CCCCCH------HHHHH--HHHHHhhcCchhHHHHHHHHHHh
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSM---QIEPTA------EVWCA--LLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~------~~~~~--ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
+-.+..+.|+|++++|.+.+... +..|-. .+|-- ...++...|+...|..-+..+.+
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55677888999999999988766 222311 14533 34668888999999877766654
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.6e-05 Score=80.97 Aligned_cols=369 Identities=14% Similarity=0.053 Sum_probs=226.9
Q ss_pred hhhhccCChhHHHHHHHhcC---CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhccccCch
Q 043955 304 DMYAKCCCVNYMGRVFYQMT---AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADV-MIIGSVLMACSGLKCMS 379 (835)
Q Consensus 304 ~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~ 379 (835)
+.....|+++.|...|-... .+|.+.|..=..+|+..|++++|++=-.+-++ +.|+. -.|+-.-.+....|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 34567899999999998753 44888899999999999999999987766655 56765 46778888889999999
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhH-HHHHHh------cC-CC------CchhHHHHHHHHHhC-----
Q 043955 380 QTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYS-RNVFES------IE-SK------DVVSWTSMISSYVHN----- 440 (835)
Q Consensus 380 ~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A-~~~f~~------~~-~~------~~~~~~~li~~~~~~----- 440 (835)
.|..-+..-++..+.+....+.|.+++. .+.+ -..|.. +. .| ....|..++..+-++
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999999999999899999999982 1111 111110 00 00 112233333332221
Q ss_pred -----CChHHHHHHHHH-----HhhcC-------CcCCh----------------------hhhHhHHHHhhcccchhhH
Q 043955 441 -----GLANEALELFYL-----MNEAN-------VESDS----------------------ITLVSALSAASSLSILKKG 481 (835)
Q Consensus 441 -----g~~~~Al~lf~~-----m~~~g-------~~p~~----------------------~t~~~ll~a~~~~~~~~~a 481 (835)
.+...|.-.+.. +...| ..|.. .-..-+.++.-+..++..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 111122111111 00111 11210 0012233334444455555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChh----------HHHHHHHHHHhcCChHHHHHHH
Q 043955 482 KELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLI----------LWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 482 ~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----------~~~~li~~~~~~g~~~~Al~l~ 551 (835)
.+-+...+... .+..-++.....|...|.+.+....-+...+..-. +..-+..+|.+.++++.|+..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 55555555544 45555666667777777766665554443332111 2222444666677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043955 552 YKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QIE 628 (835)
Q Consensus 552 ~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 628 (835)
++.+.....||..+ .....+++....+... -+.|. .+--.+ +.-+.+.|++.+|...+.++ ...
T Consensus 322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 322 QKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhccCHHHHHHHHHHHHhcC
Confidence 88777666655432 2223344444433322 34443 122222 66677788888888888777 455
Q ss_pred C-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 629 P-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 629 p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
| |+..|+....++-..+++..|..-++..++++|+....|..-+-++....+|++|.+....-.+
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 4556777777777778888888888888888888888888888888888888888877654443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.50 E-value=8e-05 Score=80.46 Aligned_cols=292 Identities=12% Similarity=-0.052 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchh---HHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChh-hhHh---
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVS---WTSMISSYVHNGLANEALELFYLMNEANVESDSI-TLVS--- 467 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~---~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~-t~~~--- 467 (835)
.+..+...|...|+.+++.+.+..... ++... .......+...|++++|.+++++.... .|+.. .+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHH
Confidence 555566666667777776555554332 22222 222233556788899999999888764 45443 2221
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCC
Q 043955 468 ALSAASSLSILKKGKELNGFIIRKGFNLE-GSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGR 543 (835)
Q Consensus 468 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 543 (835)
........+....+.+.... .....|+ ......+...+..+|++++|.+.|++..+ .+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 11111123444444444433 1122222 34445666788899999999999987663 456778888899999999
Q ss_pred hHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh-hH--HHHHHHHHhhcCCHHH
Q 043955 544 GKVAIDLFYKMEAESF-APDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP-EH--YACLVDLLGRANHLEE 617 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~-~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~--y~~lv~~l~r~g~~~e 617 (835)
+++|+..+++...... .|+. ..+..+...+...|+.++|..+|+.........+.. +. ...+...+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999999887422 1232 234456677889999999999999875321111111 11 1123333344443222
Q ss_pred HHHH---HHhC-CCCCC---HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC---------CCCCchHHHHHHHHhcCCc
Q 043955 618 AYQF---VRSM-QIEPT---AEVWCALLGACRVHSNKELGEIVAKKLLELDP---------GNPGNYVLISNVFAASRKW 681 (835)
Q Consensus 618 A~~~---~~~m-~~~p~---~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p---------~~~~~~~~l~~~y~~~g~~ 681 (835)
+.+. ...- +..|+ .........++...|+.+.|....+.+....- ......++.+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 11121 12223445556677889888888887755321 1345668889999999999
Q ss_pred hHHHHHHHHHHc
Q 043955 682 KDVEQVRMRMRG 693 (835)
Q Consensus 682 ~~a~~~~~~m~~ 693 (835)
++|.+.......
T Consensus 324 ~~A~~~L~~al~ 335 (355)
T cd05804 324 ATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999887655443
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.48 E-value=0.0017 Score=79.69 Aligned_cols=150 Identities=8% Similarity=-0.099 Sum_probs=65.8
Q ss_pred hhccCChhHHHHHHHhcCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHH
Q 043955 306 YAKCCCVNYMGRVFYQMTAQDFIS--WTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKE 383 (835)
Q Consensus 306 y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 383 (835)
|...|++.+|..........+... ...........|+++.+..++..+.......+..........+...++.+.+..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 444566666655555544332111 011112334456666666665554221111111111222223344566666666
Q ss_pred HHHHHHHhCCC-----c---h-hHHHHHHHHHHhcCChhhHHHHHHhcCC----CCc----hhHHHHHHHHHhCCChHHH
Q 043955 384 IHGYIIRKGLS-----D---L-VILNAIVDVYGKCGNIDYSRNVFESIES----KDV----VSWTSMISSYVHNGLANEA 446 (835)
Q Consensus 384 i~~~~~~~~~~-----~---~-~~~~~li~~y~k~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A 446 (835)
....+...-.. + . .....+...+...|++++|...+++... .+. ..++.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 66554432110 0 0 1222233444556666666666654321 111 1233344445556666666
Q ss_pred HHHHHHHhh
Q 043955 447 LELFYLMNE 455 (835)
Q Consensus 447 l~lf~~m~~ 455 (835)
...+.+...
T Consensus 511 ~~~~~~al~ 519 (903)
T PRK04841 511 LAMMQQTEQ 519 (903)
T ss_pred HHHHHHHHH
Confidence 666666543
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=1e-05 Score=81.60 Aligned_cols=58 Identities=5% Similarity=-0.048 Sum_probs=49.0
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCC---CchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNP---GNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|....+.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34456677999999999999999987654 68899999999999999999988877654
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.44 E-value=8.9e-05 Score=81.77 Aligned_cols=123 Identities=13% Similarity=0.066 Sum_probs=92.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCA-LLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~-ll~a~ 641 (835)
++..+-..+.+.|++++|+++.+... ...|+ ++-|..-..+|-++|++++|.+.++.. .+.+..--.|+ ..-.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 33445566789999999999999887 56796 899999999999999999999999988 55553333344 44456
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCc----------hHHHHHHHHhcCCchHHHHHHHHH
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGN----------YVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~----------~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
...|+++.|+..+.....-+- ++.. .+--++.|.+.|+|..|.+-....
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678999999999987655442 2221 244577899999999998765443
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=8.7e-06 Score=78.71 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=104.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRAN 613 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g 613 (835)
+.+|...|+++.+..-.+++.. |. ..++..+..+++...++... ...| +.+.|..++.+|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L---~~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKI---RANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCC
Confidence 3456677777665433322221 11 01223555666666666555 4567 5888888888999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCc--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 614 HLEEAYQFVRSM-QIEP-TAEVWCALLGA-CRVHSN--KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 614 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~a-~~~~~~--~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
++++|.+.+++. .+.| ++.+|..+..+ +...|+ .+.|..+++++++++|+++..+.+|+..+...|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999888887 5666 45577777776 356666 588999999999999999999999999999999999999998
Q ss_pred HHHHcC
Q 043955 689 MRMRGS 694 (835)
Q Consensus 689 ~~m~~~ 694 (835)
+++.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 887653
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.40 E-value=0.00031 Score=75.79 Aligned_cols=191 Identities=10% Similarity=-0.028 Sum_probs=92.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHH-HHHhccccCchHHHHHHHHHHHhCCCchhHHH---HHH
Q 043955 329 SWTTIIAGYAQNNCHLKALELFRTVQLEG-LDADVMIIGSV-LMACSGLKCMSQTKEIHGYIIRKGLSDLVILN---AIV 403 (835)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l-l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~li 403 (835)
.|..+...+...|+.+++...+.+..... ..++......+ ...+...|+.+.+..++..+++..+.+...+. .+.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 87 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHH
Confidence 34444445555555666555544443321 11222111111 11234456666666666666666555443333 122
Q ss_pred HHHHhcCChhhHHHHHHhcCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhh
Q 043955 404 DVYGKCGNIDYSRNVFESIESKDVV---SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKK 480 (835)
Q Consensus 404 ~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 480 (835)
......+..+.+.+.++.....+.. .+..+...+...|++++|...+++.... .|+.
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~------------------ 147 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDD------------------ 147 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC------------------
Confidence 2222234455555555443222222 2233344667777777777777777763 3443
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CCh--hHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 481 GKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-----KDL--ILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 481 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~--~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
...+..+...|...|++++|...+++..+ ++. ..|..+...+...|+.++|+.+|++
T Consensus 148 ----------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 148 ----------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred ----------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22334445555555566665555554432 111 2344455556666666666666666
Q ss_pred HH
Q 043955 554 ME 555 (835)
Q Consensus 554 m~ 555 (835)
..
T Consensus 212 ~~ 213 (355)
T cd05804 212 HI 213 (355)
T ss_pred Hh
Confidence 54
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.39 E-value=9.2e-06 Score=83.29 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~ 477 (835)
+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +..-
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~q---------- 168 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQ---------- 168 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHH----------
Confidence 3444455677788888888887765 45555666788889999999999999999863 3333 2222
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 478 LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
+..+.+..+.-.+.+.+|..+|+++.+ +++.+.|.+..++.+.|++++|.+++++.
T Consensus 169 ---------------------La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 169 ---------------------LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp ---------------------HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 234455555555678899999988765 36677888888999999999999999998
Q ss_pred HHCCCCCCH-HHHHHHHHHhcccCcH-HHHHHHHHHhhhcCC
Q 043955 555 EAESFAPDH-ITFLALLYACSHSGLI-NEGKKFLEIMRCDYQ 594 (835)
Q Consensus 555 ~~~g~~Pd~-~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~ 594 (835)
.. ..|+. .|+..++.++.+.|.. +.+.+++..++..+.
T Consensus 228 l~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 228 LE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp CC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 76 45554 5777788888888888 667788888885543
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.0004 Score=73.35 Aligned_cols=114 Identities=18% Similarity=0.087 Sum_probs=79.8
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCc
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSN 646 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~ 646 (835)
...+.+.|++..|...+..+.. ..| |...|+.-.-+|.+.|.+.+|++-.+.. ...|+.. .|--=..+.+..++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 4556677777777777776663 346 4667777777777777777777655554 4455544 55555566677789
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 686 (835)
.+.|..++++.++++|++......+...+.....-+...+
T Consensus 442 ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee 481 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEE 481 (539)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHH
Confidence 9999999999999999998888888887776433333333
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.36 E-value=5.2e-07 Score=58.62 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhhc
Q 043955 88 GYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM 119 (835)
Q Consensus 88 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 119 (835)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.34 E-value=5.4e-05 Score=87.70 Aligned_cols=235 Identities=12% Similarity=0.170 Sum_probs=160.4
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCC--------CchhHHHHHHHHHhCCChHHHHHHHHHHhhc
Q 043955 385 HGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESK--------DVVSWTSMISSYVHNGLANEALELFYLMNEA 456 (835)
Q Consensus 385 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~ 456 (835)
|...+...+.+...|-..+......++++.|++++++.... -.-.|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq- 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ- 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-
Confidence 34444444444445555555555556666666665554321 122455555544444444444555555443
Q ss_pred CCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHH
Q 043955 457 NVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK---DLILWTS 533 (835)
Q Consensus 457 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~ 533 (835)
. ...-.++..|...|.+.+..++|.++|+.|.++ ....|..
T Consensus 1526 ----------------------------------y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~ 1569 (1710)
T KOG1070|consen 1526 ----------------------------------Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIM 1569 (1710)
T ss_pred ----------------------------------h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHH
Confidence 1 122456788999999999999999999999864 5678999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhh
Q 043955 534 MINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY-ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGR 611 (835)
Q Consensus 534 li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r 611 (835)
.+..+.++.+.+.|-.++++.++.=.+-.++-|.+... --.+.|+.+.|+.+|+.....| | ..+.|+..+|+-.+
T Consensus 1570 y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay---PKRtDlW~VYid~eik 1646 (1710)
T KOG1070|consen 1570 YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY---PKRTDLWSVYIDMEIK 1646 (1710)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC---ccchhHHHHHHHHHHc
Confidence 99999999999999999999998422223555554332 2357799999999999887664 5 57889999999999
Q ss_pred cCCHHHHHHHHHhC---CCCCCH--HHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 612 ANHLEEAYQFVRSM---QIEPTA--EVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 612 ~g~~~eA~~~~~~m---~~~p~~--~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
.|..+.+..+|++. .+.|-- ..+.-.|.--..|||-+..+.+-.++.|
T Consensus 1647 ~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1647 HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 99999999999987 344422 2566667777788887777777666654
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.34 E-value=0.0059 Score=64.73 Aligned_cols=173 Identities=13% Similarity=0.082 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHhhc-CCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChhhHHHHh
Q 043955 443 ANEALELFYLMNEA-NVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNL-EGSVASSLVDMYARCGALDIANKVF 520 (835)
Q Consensus 443 ~~~Al~lf~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f 520 (835)
.+.....+++.... .++| ..+|...+...-+..-++.|+.++..+.+.+..+ ++++.++++..|+ .++.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44455566665542 2333 3567777777778888888888888888887777 7888888888775 47778888888
Q ss_pred hhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCC-
Q 043955 521 NCVQT--KD-LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQ- 594 (835)
Q Consensus 521 ~~~~~--~~-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 594 (835)
+--.+ +| +.--+..+.-+...++-..|..+|++.+..++.||. ..|...|.-=+.-|+.....++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 75443 23 334456677777778888888888888877666665 4577777777777888877777776666655
Q ss_pred -CCCChhHHHHHHHHHhhcCCHHH
Q 043955 595 -LDPWPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 595 -i~p~~~~y~~lv~~l~r~g~~~e 617 (835)
.+|...+-...++.|+=.+....
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccc
Confidence 55555555556666655554433
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=3.6e-05 Score=81.73 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=148.6
Q ss_pred cccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHH
Q 043955 374 GLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELF 450 (835)
Q Consensus 374 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf 450 (835)
+.|++..|.-.++..++..+.+...|--|...-+..++-..|+..+.+..+ .|....-+|...|...|.-.+|+..|
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 445566666666666666666666777776666666666666666666554 24455555566677777777788777
Q ss_pred HHHhhcCCc--------CChhhhHhHHHHhhcccchhhHHH-HHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhh
Q 043955 451 YLMNEANVE--------SDSITLVSALSAASSLSILKKGKE-LNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFN 521 (835)
Q Consensus 451 ~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~-i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 521 (835)
+.-.....+ ++..+-.. ........+....+ +++.....+...|+.++..|.-.|--.|+++.|...|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 776442210 01110000 11222223333343 34444556767889999999999999999999999999
Q ss_pred hCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhh
Q 043955 522 CVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMR 590 (835)
Q Consensus 522 ~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (835)
.... .|...||-|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.++||.++|-+..
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 8763 3788999999999999999999999999999 899985 45567778999999999999886543
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.31 E-value=9.6e-07 Score=57.38 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=18.1
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 594 QLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 594 ~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
|+.||..+|+.||+.|+++|++++|.+++++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=6.4e-06 Score=75.29 Aligned_cols=98 Identities=11% Similarity=-0.044 Sum_probs=87.0
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 594 QLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 594 ~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
.++|+ ++...+..+...|++++|.+.++.. ...| +...|..+..+|...|+.+.|+..++++++++|+++..+..+
T Consensus 21 ~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 21 SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 45565 4567889999999999999999987 5666 566899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHc
Q 043955 672 SNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 672 ~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.+|...|+.++|.+.....-+
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998776554
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=4.4e-05 Score=73.87 Aligned_cols=155 Identities=11% Similarity=0.070 Sum_probs=118.2
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEG 582 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a 582 (835)
+-.|.+.|+.+......+.+..+. ..|...++.++++..+++.+. ..|+. ..|..+...+...|+.++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456788888777654443322211 012235677888888888887 45554 5688888899999999999
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHH
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLL-GRANH--LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKK 656 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l-~r~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 656 (835)
...|+... .+.| +...+..+..++ .+.|+ .++|.+++++. ...| +..++..|..++..+|+.+.|+..+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999777 6778 588899999865 77787 59999999988 6667 455888888889999999999999999
Q ss_pred HHhcCCCCCCchHHH
Q 043955 657 LLELDPGNPGNYVLI 671 (835)
Q Consensus 657 ~~~l~p~~~~~~~~l 671 (835)
+++++|.+..-+-.+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999999877665444
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.27 E-value=0.023 Score=69.96 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=42.4
Q ss_pred HHhcCChhhHHHHhhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhc
Q 043955 507 YARCGALDIANKVFNCVQTKDL-------ILWTSMINANGLHGRGKVAIDLFYKMEAE----SFAPDH-ITFLALLYACS 574 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~Pd~-~t~~~ll~a~~ 574 (835)
+...|+.+.|.+.+.....+.. ..+..+..++...|+.++|..++++.... |..++. .+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3445666666666654443211 11234455556666666666666665542 222221 23334444555
Q ss_pred ccCcHHHHHHHHHHhh
Q 043955 575 HSGLINEGKKFLEIMR 590 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~ 590 (835)
..|+.++|...+....
T Consensus 743 ~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 743 QQGRKSEAQRVLLEAL 758 (903)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666665544
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.26 E-value=1.6e-05 Score=71.37 Aligned_cols=122 Identities=9% Similarity=0.049 Sum_probs=100.1
Q ss_pred CCC-C-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 594 QLD-P-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 594 ~i~-p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
+++ | +.+..-.+...+...|++++|.++++.. -+.| +..-|-.|...|+..|+.+.|+.++.+++.++|+||.+|.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 555 5 4677777888899999999999999988 6677 4558999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
.++.+|...|+.+.|.+-.+...... ..||+-.+|..+-+.....+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHh
Confidence 99999999999999999877554321 14577767766666554444
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.24 E-value=3.5e-05 Score=88.23 Aligned_cols=185 Identities=12% Similarity=0.076 Sum_probs=140.9
Q ss_pred hhhHhHHH-Hhhcccchh-hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC------CCChhHHHHH
Q 043955 463 ITLVSALS-AASSLSILK-KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ------TKDLILWTSM 534 (835)
Q Consensus 463 ~t~~~ll~-a~~~~~~~~-~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~------~~~~~~~~~l 534 (835)
.|...++. +.+..|.-+ .|+++|.++.+ ...+.|.+..+..-+-+.. ..++..+-.|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 34444444 445566544 44677776642 2233444443333332222 2357788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRA 612 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~ 612 (835)
.....+.|+.++|+.+++...+ +.||.. .+..+..++.+.+.+++|...+++.. ...| +..++..+..+|.+.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998 899985 57778889999999999999999776 6688 488999999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 613 NHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 613 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
|+++||.++|++. .-.|+ +.+|-++..+.+..|+.+.|..+++++++...+-+..
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999998 23444 6689999999999999999999999999987665444
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=3.2e-05 Score=84.12 Aligned_cols=196 Identities=14% Similarity=0.086 Sum_probs=145.2
Q ss_pred CCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043955 492 GFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY 571 (835)
Q Consensus 492 g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~ 571 (835)
+++|-....-.+.+.+.++|-+.+|..+|+++ ..|--.|..|...|+..+|..+..+-.+ -+||..-|..++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45566666677777888888888888888764 4677777788888877777777776665 4677777777776
Q ss_pred HhcccCcHHHHHHHHHHhhh-------------------------cCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 572 ACSHSGLINEGKKFLEIMRC-------------------------DYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~-------------------------~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.......++.|+++++.... ...+.| ...+|-...-+.-+.++++.|.+.|...
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 66555556666665543221 123445 3556666666677788899888888776
Q ss_pred -CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 626 -QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 626 -~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
..+||.. .|++|-.++-++++-.+|....+++++-+-++...+....-+-...|.|++|.+....|.+-
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7788765 89999999999999999999999999988777777777777778999999999988777553
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=2.5e-05 Score=70.92 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=80.4
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
...| +......++..+...|++++|.+.++.. ...| ++..|..+...+...|+.+.|...++++++++|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 4566 3566777888888888888888888876 5555 45677777778888889999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHc
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++.+|...|++++|.+..+...+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999888765554
No 117
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=2.5e-06 Score=56.45 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD 562 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd 562 (835)
++||+||.+|++.|+.++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=0.00033 Score=73.34 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=84.7
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~ 648 (835)
.....|..++|+..++.+. .-.| ++.-....++++.++|+.++|.+.++++ ...|+ ...|-++..++...|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~---~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLI---AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 3456677777777777766 3356 3555566777888888888888887777 56665 456777777777788888
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
.|+...+..+.-+|+|+..|.+|+..|...|+-.++...+.++
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 8888888888888888888888888777777777766666544
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.16 E-value=0.0026 Score=63.32 Aligned_cols=307 Identities=14% Similarity=0.071 Sum_probs=171.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH---HHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcC
Q 043955 334 IAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSV---LMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCG 410 (835)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g 410 (835)
-+.+..+|++..|+..|....+. .|+ .|..+ ...|...|.-..|..=+..++...++-....-.-...+.|.|
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~--dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEG--DPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcC--Cch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 34444555555555555555432 122 22222 122333444444444444444444432222223334455777
Q ss_pred ChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH
Q 043955 411 NIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR 490 (835)
Q Consensus 411 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 490 (835)
.++.|..-|+.+...++.- +....++.+ +.+.+++.. ....+......|+...+......+++
T Consensus 121 ele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~~---------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHWV---------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHHH---------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 7777777776665432210 000111111 111111110 11112222333444444444444443
Q ss_pred hCCCCchhHHHHHHHHHHhcCChhhHHHHhhh---CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--
Q 043955 491 KGFNLEGSVASSLVDMYARCGALDIANKVFNC---VQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT-- 565 (835)
Q Consensus 491 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t-- 565 (835)
.. +.|...+..-.+.|.+.|.+..|..-... +...|....--+-..+-+-|+.+.++...++-++ +.||+-.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf 260 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCF 260 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHH
Confidence 21 33555666667778888888888765543 4455667777777778888999999998888887 7888732
Q ss_pred -HHH--------HHH--HhcccCcHHHHHHHHHHhhhcCCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 043955 566 -FLA--------LLY--ACSHSGLINEGKKFLEIMRCDYQLDPW-----PEHYACLVDLLGRANHLEEAYQFVRSM-QIE 628 (835)
Q Consensus 566 -~~~--------ll~--a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 628 (835)
|.- +-+ .....+.+.++.+-.+... ..+|. ...+..+-.++...|++-||++..++. .+.
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl---k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL---KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 211 111 2234555666665555443 23343 344445566777889999999888776 778
Q ss_pred CC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 629 PT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 629 p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
|| +.++.--..|+..--.+|.|+.-++++.+++|+|..+
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 86 5577777788888888999999999999999987544
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.14 E-value=7.9e-05 Score=75.08 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQT--K-DL---ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI----TF 566 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~---~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~----t~ 566 (835)
....-.+...|.+.|++++|...|+++.. | +. .+|..+...|...|++++|+..|+++.+ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 44556666777788888888888886653 2 22 3667778888888888888888888887 345432 34
Q ss_pred HHHHHHhccc--------CcHHHHHHHHHHhhhcCCCCCChh---------------HHHHHHHHHhhcCCHHHHHHHHH
Q 043955 567 LALLYACSHS--------GLINEGKKFLEIMRCDYQLDPWPE---------------HYACLVDLLGRANHLEEAYQFVR 623 (835)
Q Consensus 567 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~i~p~~~---------------~y~~lv~~l~r~g~~~eA~~~~~ 623 (835)
..+..++... |..++|.+.|+.+...+.-.+... +...+.+.+.+.|++++|...++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4444444433 678888888888775432222110 11256778889999999999887
Q ss_pred hC----CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 624 SM----QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 624 ~m----~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
+. |-.|. +..|..+..++...|+.+.|...++.+....|
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 76 44443 45888999999999999999998887766555
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=3.8e-06 Score=55.52 Aligned_cols=35 Identities=37% Similarity=0.568 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDS 462 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~ 462 (835)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999983
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.00015 Score=83.08 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=140.6
Q ss_pred hHHHHHHHHHhCCChHHHH-HHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHH-HHHHHHHHhCCCCchhHHHHHHHH
Q 043955 429 SWTSMISSYVHNGLANEAL-ELFYLMNEANVESDSITLVSALSAASSLSILKKGK-ELNGFIIRKGFNLEGSVASSLVDM 506 (835)
Q Consensus 429 ~~~~li~~~~~~g~~~~Al-~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~li~~ 506 (835)
..+.+=.+.+.-|..++|- ++.++..+ ++.+.+.......+. ++.+++ ..+..++..+-.|.+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~La~i 95 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYV--RRYPHTELFQVLVARA 95 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHH--HhccccHHHHHHHHHH
Confidence 3333444566677777774 45555443 233333322222221 122222 3455668888889999
Q ss_pred HHhcCChhhHHHHhhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCcHHHH
Q 043955 507 YARCGALDIANKVFNCVQT--K-DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL-ALLYACSHSGLINEG 582 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~-~ll~a~~~~g~~~~a 582 (835)
....|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..||..+.. .+..++.+.|..++|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHH
Confidence 9999999999999998774 3 567889999999999999999999999998 689887654 455677899999999
Q ss_pred HHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 043955 583 KKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLG 639 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~ 639 (835)
..+|+.... -.|+ ...+..+..+|-..|+.++|...+++. -..|.+.-++.+++
T Consensus 174 ~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 174 DACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 999999884 3564 788999999999999999999999988 34555556666654
No 123
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.11 E-value=0.025 Score=61.57 Aligned_cols=233 Identities=10% Similarity=0.036 Sum_probs=115.3
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHH
Q 043955 35 SNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQ 114 (835)
Q Consensus 35 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 114 (835)
..+++...+.+.+...+ +.+-...|....--.+...|+.++|......-++..+. +.+.|..+--.+-...++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 34555555665555554 22223333333333334456666665554444442221 23445555444555556666666
Q ss_pred HHhhc--CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCC-
Q 043955 115 LFDRM--GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQ- 191 (835)
Q Consensus 115 ~f~~m--~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~- 191 (835)
.|... -.+.|...|.-+--.=++.|+++.....-....+.. .-....|.....+.--.|+...+..+.+...+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66654 222344444444433444555555555444444421 11233444444444555666666666666655542
Q ss_pred CCchhHHHHHH------HHHHhCCChhHHHHHHhcCCCC--Ccc-cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc
Q 043955 192 NLQVYVANALI------AMYARCGKMTEAAGVLYQLENK--DSV-SWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQV 262 (835)
Q Consensus 192 ~~~~~~~~~li------~~y~~~g~~~~A~~~f~~~~~~--d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (835)
.|+...+.-.. ....+.|..+.|.+-+...... |-. .-.+...-+.+.++.++|..++..+... .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 33333332222 2234556666666665554331 211 2233445566777777777777777764 56766
Q ss_pred hHHHHHHHHh
Q 043955 263 CTVNAVSASG 272 (835)
Q Consensus 263 t~~~ll~a~~ 272 (835)
-|...+..|.
T Consensus 254 ~Yy~~l~~~l 263 (700)
T KOG1156|consen 254 DYYEGLEKAL 263 (700)
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 124
>PLN02789 farnesyltranstransferase
Probab=98.11 E-value=0.00021 Score=74.41 Aligned_cols=172 Identities=10% Similarity=0.083 Sum_probs=130.1
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccc
Q 043955 502 SLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHG-RGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHS 576 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~ 576 (835)
.+-..+.+.+..++|....+.+.+ .+..+|+.....+...| ..++++..++++.+ ..|+. .+|..-...+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHc
Confidence 334445667888999999887764 35567887777777777 67999999999998 45554 3465544445555
Q ss_pred Cc--HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---Cch-
Q 043955 577 GL--INEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH---SNK- 647 (835)
Q Consensus 577 g~--~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---~~~- 647 (835)
|. .+++..+++.+. .++| +...|+....++.+.|++++|+++++++ ...| +..+|+......... |..
T Consensus 120 ~~~~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 65 367788888777 6678 5788999999999999999999999998 5556 566888877665543 222
Q ss_pred ---hHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 648 ---ELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 648 ---~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
+......+++++++|+|..+|.-+..+|...
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 4566677799999999999999999999773
No 125
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0012 Score=64.43 Aligned_cols=342 Identities=10% Similarity=0.025 Sum_probs=188.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCC--CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHhhcC
Q 043955 97 NSLVAMYAKCYDFRKARQLFDRMGE--KEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAA-LQACEDS 173 (835)
Q Consensus 97 ~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~ 173 (835)
++.+....+..++++|.+++..-.+ +++....+.|-.+|-...++..|-+.++++-.. .|....|..- .+.+-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 3444444555556666665554422 124444555555566666666666666665543 2322222110 1112222
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHH--HHHhCCChhHHHHHHhcCCC-CCcccHHHHHHHHHcCCChhHHHHHHH
Q 043955 174 SFETLGMEIHAATVKSGQNLQVYVANALIA--MYARCGKMTEAAGVLYQLEN-KDSVSWNSMLTGFVQNDLYCKAMQFFR 250 (835)
Q Consensus 174 ~~~~~a~~l~~~~~~~g~~~~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~~ 250 (835)
+.+..|..+...+... ++...-..-+. ..-..+++..++.+.++.+. .+..+.+......-+.|++++|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 3333333333333211 11110011111 12246788889999999884 566666666666778999999999999
Q ss_pred HHHHC-CCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccc----hhhhhhhccCChhHHHHHHHhcCCC
Q 043955 251 ELQGA-GQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGN----TLMDMYAKCCCVNYMGRVFYQMTAQ 325 (835)
Q Consensus 251 ~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~----~Li~~y~~~g~~~~A~~~f~~m~~~ 325 (835)
...+- |..| ...|+..+ +..+.++...|.....+++.+|+...+...- -.++.-+-.+-...+...
T Consensus 169 aAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa------- 239 (459)
T KOG4340|consen 169 AALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA------- 239 (459)
T ss_pred HHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-------
Confidence 88764 4555 35566555 4456688899999999999998765443221 111110000000000000
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEG-LDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVD 404 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~ 404 (835)
-+..+|.-...+.+.++++.|.+.+.+|.-.. -..|++|+-.+.-. -..+++..+..-+..++...+-...++..++-
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLl 318 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLL 318 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHH
Confidence 01234444555677888888888888885332 45677776554322 12344666666677777777655667888888
Q ss_pred HHHhcCChhhHHHHHHhcCCC-----CchhHHHHHHHHHhCCChHHHHHHHHHH
Q 043955 405 VYGKCGNIDYSRNVFESIESK-----DVVSWTSMISSYVHNGLANEALELFYLM 453 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~Al~lf~~m 453 (835)
.|+|..-++-|-.++.+-+.- +...|+.+=+.-.-.-.+++|++-+..+
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999998888776542 3334443222222234566666554443
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.05 E-value=0.00021 Score=83.08 Aligned_cols=197 Identities=16% Similarity=0.166 Sum_probs=164.9
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQTK--------DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL 567 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~ 567 (835)
+...|-..+......++++.|++++++.... -...|.++++.....|.-+...++|+++.+ +---...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHH
Confidence 4566777788888899999999999987632 245899999999999999999999999987 222234588
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhh
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP---TAEVWCALLGACRV 643 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~a~~~ 643 (835)
.|+.-|...+..++|-++|+.|.+.++ -....|...++.|.|..+-++|.++++++ ..-| ...+..-....-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999988 55678999999999999999999999876 3333 34466667777789
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCC
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 696 (835)
+|+.|+|+.+++-++.-.|.....|..+.++=..+|.-+.++.+.+..-..++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998999999999998887776554
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00034 Score=67.50 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 043955 559 FAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCA 636 (835)
Q Consensus 559 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ 636 (835)
..|+......+-.++.-.|+-+.+..+.......+.. +.+.....+....+.|++.+|...+.+. +-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPK--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcc--cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 4665433355666777788888887777655422211 3445555888899999999999999988 44567889999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..+|-+.|+++.|+..+.+++++.|.++.++..|+-.|.-.|+.++|..+......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988776654
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.00012 Score=79.94 Aligned_cols=210 Identities=15% Similarity=0.124 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~ 477 (835)
..-.+...+.++|-...|..+|+++ ..|--.|-.|...|+..+|..+..+-.+ -+||+.-|..+.+..-...-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 7778899999999999999999987 5788889999999999999998888877 47888888888777777777
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 478 LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
+++|.++..+.... ...++.......++++++.+-|+.-.+ --..+|-....+..+.++.+.|.+.|..-
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 77777766654322 111111222235788888888875443 24567888888888888888888888888
Q ss_pred HHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 555 EAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 555 ~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.. ..||.. .|+.+-.++.+.|.-.+|...+.+..+- +-+| ...|-...-+...-|.+++|.+.+.++
T Consensus 546 vt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n~~~-w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 546 VT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-NYQH-WQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-CCCC-CeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77 678774 5888888888888888888888766532 3222 222333344556778888888888776
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.00079 Score=70.62 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=118.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY-ACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
....|-...-.+-..|..++|+..++.++. -.||.+-|..+.. -+...+++++|.+.|+.+. ...|+ .-..-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHH
Confidence 444555555566688999999999999888 5888877766554 5789999999999999888 56775 555667
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
+.++|...|+..||...++.. ..+-|+..|..|..+|...||...+..+. +..|+-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHH
Confidence 889999999999999999887 33347889999999999999998886654 45788899999
Q ss_pred HHHHHHHHHHcCC
Q 043955 683 DVEQVRMRMRGSG 695 (835)
Q Consensus 683 ~a~~~~~~m~~~~ 695 (835)
+|.......+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999887777654
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00022 Score=68.69 Aligned_cols=176 Identities=18% Similarity=0.104 Sum_probs=128.2
Q ss_pred HHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 043955 501 SSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG 577 (835)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 577 (835)
.-+-..|--.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -+||..+++.+.-+|-+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 445566666788777777776644 245566777888888999999999999998873 3455678888888899999
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 578 LINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSMQI-EP-TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 578 ~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
+.++|..-|.... .+.| ++..++.|.-.|.-.|++++|..++...-. .+ |..+-..|.-+....|+++.|+.+.
T Consensus 149 r~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999888776 5566 467788888888888999999999888732 23 6777888888888899999988887
Q ss_pred HHHHhcCCCCCC-chHHHHHHHHhcCCch
Q 043955 655 KKLLELDPGNPG-NYVLISNVFAASRKWK 682 (835)
Q Consensus 655 ~~~~~l~p~~~~-~~~~l~~~y~~~g~~~ 682 (835)
.+-+. |+.+. ....|.++....|-|.
T Consensus 226 ~~e~~--~~~~~~~~~~l~~~~~~~~~~~ 252 (257)
T COG5010 226 VQELL--SEQAANNVAALRAAASQSGAWT 252 (257)
T ss_pred ccccc--chhHhhHHHHHHHhhcccchhH
Confidence 65443 33322 2334555555555553
No 131
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.99 E-value=0.0052 Score=61.27 Aligned_cols=292 Identities=14% Similarity=0.077 Sum_probs=181.6
Q ss_pred cCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHH---HHHHhCCChHHHHHHHHH
Q 043955 376 KCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMI---SSYVHNGLANEALELFYL 452 (835)
Q Consensus 376 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~Al~lf~~ 452 (835)
+.+..|..-+-.+++..+.+-..+-.-...|...|+-..|..-|++..+--+.-+.+-| ..+.+.|..++|..=|+.
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 44444444444444444443334444455666667666666666655442222222222 235567777777777777
Q ss_pred HhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChh
Q 043955 453 MNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLI 529 (835)
Q Consensus 453 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~ 529 (835)
.++. .|+.-+ ...+..++...++-..+.. .+..+.-.|+...|......+.+ -|..
T Consensus 132 vl~~--~~s~~~---~~eaqskl~~~~e~~~l~~----------------ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 132 VLQH--EPSNGL---VLEAQSKLALIQEHWVLVQ----------------QLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HHhc--CCCcch---hHHHHHHHHhHHHHHHHHH----------------HHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 7663 233222 2333333333333222222 22334556888888888887764 4777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh----hHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP----EHYAC 604 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~----~~y~~ 604 (835)
.+..-..+|...|....|+.=++..-+ +..|. .++.-+-.-+...|+.+.++.-.+... .++|+- .+|-.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKK 265 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHH
Confidence 888889999999999999988887766 44443 445555555677888888887766554 566752 23332
Q ss_pred H---HH------HHhhcCCHHHHHHHHHhC-CCCCCH--HHH---HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 605 L---VD------LLGRANHLEEAYQFVRSM-QIEPTA--EVW---CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 605 l---v~------~l~r~g~~~eA~~~~~~m-~~~p~~--~~~---~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
+ +. ...+.+++.++++--++. ..+|.. +.+ ..+-..++.-+++-.|++...++++.+|+|..++.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 2 21 233556777777666554 556652 223 33334456678999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHc
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.-+..|....+|++|..-.+...+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999999999999877765544
No 132
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.2e-05 Score=52.70 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAP 561 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P 561 (835)
+.+||++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3588999999999999999999999999988887
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=0.0002 Score=75.89 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccC
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSG 577 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g 577 (835)
+..+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.+.. .|+. ..+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34556677777899999999999999888888888899998999999999999999974 5544 34444445688999
Q ss_pred cHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 043955 578 LINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEPT 630 (835)
Q Consensus 578 ~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~ 630 (835)
+.+.|..+.+.+. .+.|+ -+.|..|+.+|.+.|++++|+-.++.+|+-|.
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 9999999999888 77894 78999999999999999999999999987653
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.00018 Score=65.29 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=88.5
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 043955 550 LFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-Q 626 (835)
Q Consensus 550 l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 626 (835)
+|++.+. ..|+.. ....+...+...|+.++|.+.|+.... +.| +...+..++.++.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 566553 355666777888999999999988763 456 5788888999999999999999988877 4
Q ss_pred CCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 627 IEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 627 ~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 455 45677777888888999999999999999999987654
No 135
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0026 Score=62.05 Aligned_cols=302 Identities=13% Similarity=0.109 Sum_probs=146.7
Q ss_pred HHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CCchhHHHH-HHHHHhCC
Q 043955 365 IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--KDVVSWTSM-ISSYVHNG 441 (835)
Q Consensus 365 ~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~l-i~~~~~~g 441 (835)
+.+++..+.+...++.+.++...-.+..+.+....+.|..+|-...++..|-..++++.. |...-|... ...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 334444444445555555555555555555555666667777777777777777766653 333223221 23455677
Q ss_pred ChHHHHHHHHHHhhcCCcCChhhhHhHHHHh--hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHH
Q 043955 442 LANEALELFYLMNEANVESDSITLVSALSAA--SSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKV 519 (835)
Q Consensus 442 ~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 519 (835)
.+.+|+.+...|... |+-..-..-|.+. -+.+++..++.+.++.-. +.+..+.+...-..-|.|+.++|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHH
Confidence 788888887777652 2211111111111 112233333332222211 11222222222233344555555555
Q ss_pred hhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC
Q 043955 520 FNCVQT----KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQL 595 (835)
Q Consensus 520 f~~~~~----~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i 595 (835)
|+...+ .....||.-+.-| +.|+...|+++..++++.|++--.. + .-|..-++.. .++. -
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-l--------gIGm~tegiD-vrsv-----g 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-L--------GIGMTTEGID-VRSV-----G 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-c--------CccceeccCc-hhcc-----c
Confidence 544432 1233344333222 3444555555555555544431110 0 0011111110 0000 0
Q ss_pred CCChhHHHHHH-------HHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 596 DPWPEHYACLV-------DLLGRANHLEEAYQFVRSMQ----IEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 596 ~p~~~~y~~lv-------~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.|-.-|-+.++ .++.+.|+.+-|.+.+..|| -+.|+++...+.- .-..++...+.+-..-+++++|--
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCC
Confidence 01112233333 44567788888888888885 2456776655432 233455666666677778888866
Q ss_pred CCchHHHHHHHHhcCCchHHHHHHH
Q 043955 665 PGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 665 ~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+.++..+--+|.+..-++-|..|..
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 6677667777888877777777653
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00027 Score=74.93 Aligned_cols=122 Identities=19% Similarity=0.154 Sum_probs=101.8
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRV 643 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 643 (835)
..+++..+...+++++|..+|+++.+. .|+ ....|+.++...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 446777788889999999999998854 355 4556888888889999999999887 3344 55566666667889
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.++.+.|..+++++.++.|++-..|..|+.+|...|+|++|.-....+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999998877654
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=1.8e-05 Score=51.80 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcC
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVES 460 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p 460 (835)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00011 Score=72.25 Aligned_cols=95 Identities=22% Similarity=0.125 Sum_probs=71.9
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKEL 649 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~ 649 (835)
....+++++|+..|.... .+.| ++.-|..-.-+|.+-|.+++|.+-.++. .+.|... .|..|.-|+...|+.+.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345677777777777666 6677 4555666677788888888888777766 6777655 88888889999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHH
Q 043955 650 GEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~ 670 (835)
|+++|+++++++|+|..+...
T Consensus 168 A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHH
Confidence 999999999999988744333
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.77 E-value=0.0027 Score=73.77 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
|-.-++..++.+.+..+++.+++++|.|..+..-|+..|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3334445555555555566666666655555555555444
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.3e-05 Score=49.28 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESF 559 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 559 (835)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4e-05 Score=48.85 Aligned_cols=31 Identities=42% Similarity=0.633 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCC
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANV 458 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~ 458 (835)
++||+||++|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998774
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.63 E-value=0.21 Score=56.82 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=109.2
Q ss_pred CChHhHHHHHHhcCCC-CcchHHHHHHHH--HhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHH
Q 043955 6 GSVLDAEQLFDKVSQR-TVFTWNAMLGAY--VSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHG 82 (835)
Q Consensus 6 g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~ 82 (835)
+++..|....++..++ ....|...+.++ .+.|..++|..+++.....+.. |..|...+-..|...+..+++..+++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455555555554432 223344455544 3567777777777766554433 66677777777777777777777777
Q ss_pred HHHHhCCCCCcchHHHHHHHHHhcCChHH----HHHHHhhcCCCCCeeeHHHHHHHHHhC-CChh---------HHHHHH
Q 043955 83 LVLKCGYDSTDFIVNSLVAMYAKCYDFRK----ARQLFDRMGEKEDVVLWNSIISAYSAS-GQCL---------EALGLF 148 (835)
Q Consensus 83 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~----A~~~f~~m~~~~~~~~~n~li~~~~~~-g~~~---------~A~~l~ 148 (835)
+..... |+......+..+|++-+++.+ |.+++...|. .--.-|+ +++.+.+. ...+ -|.+.+
T Consensus 102 ~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 102 RANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWS-VISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHH-HHHHHHHhccCCcccccchhHHHHHHHH
Confidence 776543 445566666667777665533 4455555554 2233343 33333322 1111 133344
Q ss_pred HHHHHCC-CCCChhhHHHHHHHhhcCCChhHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC
Q 043955 149 REMQRVG-LVTNAYTFVAALQACEDSSFETLGMEIHAATV-KSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN 223 (835)
Q Consensus 149 ~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 223 (835)
+.+.+.+ -.-+..-.-.-+..+...+.+++|..++..-. ..-...+...-+--++++..++++.+-.++-.++..
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444332 11111111111223344556666666663322 222233444445566666666666665555444433
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.00045 Score=73.70 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=69.5
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN 646 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~ 646 (835)
.......|++++|..+|+.+. .+.| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 344556677777777777666 4456 3666777777777777777777777766 4555 34466666667777777
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNV 674 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 674 (835)
++.|+..++++++++|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777777776665555443
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.0012 Score=60.62 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=48.1
Q ss_pred cCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCchhH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA----EVWCALLGACRVHSNKEL 649 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~a~~~~~~~~~ 649 (835)
.|+...+...++.+..+++-.| .....-.+...+...|++++|.+.++.. ...||. ..+-.|...+...|+.+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444333222 1222333344444445555555444444 111222 122223333444455555
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 650 GEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
|...++. ..-+|-.+..+.+++++|.+.|++++|....+
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5444433 12222233445556666666666666655543
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.59 E-value=0.23 Score=56.49 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=130.2
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHh--ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHH
Q 043955 34 VSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACA--MLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRK 111 (835)
Q Consensus 34 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 111 (835)
...+++..|+....++.+. .|+ ..|..+++++. +.|..++|..+.+.....+.. |..+...+-..|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4567888999888887764 233 34667777764 788999999888877766655 77888999999999999999
Q ss_pred HHHHHhhc-CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCC-C---------hhHHH
Q 043955 112 ARQLFDRM-GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSS-F---------ETLGM 180 (835)
Q Consensus 112 A~~~f~~m-~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~---------~~~a~ 180 (835)
|..++++. ..-|+......+..+|+|.+++.+-.+.--+|-+ ..+-+.+.|=++++...... . +..|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99999988 3336655556667788887776654333333332 23345566655555433211 1 12333
Q ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhCCChhHHHHHHhc-C----CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 043955 181 EIHAATVKSG-QNLQVYVANALIAMYARCGKMTEAAGVLYQ-L----ENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQG 254 (835)
Q Consensus 181 ~l~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-~----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (835)
...+.+++.+ ......-.-.-.......|+.++|..++.. . ..-+...-|--+.-+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444433 111111111122333455667777776622 1 112333333445556666667766666666665
Q ss_pred CC
Q 043955 255 AG 256 (835)
Q Consensus 255 ~g 256 (835)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 43
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0024 Score=61.14 Aligned_cols=172 Identities=18% Similarity=0.206 Sum_probs=130.6
Q ss_pred CChhhHHHHhhhCCC--------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhcccCc
Q 043955 511 GALDIANKVFNCVQT--------KDLI-LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT---FLALLYACSHSGL 578 (835)
Q Consensus 511 g~~~~A~~~f~~~~~--------~~~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t---~~~ll~a~~~~g~ 578 (835)
.+.++..+++.++.. ++.. .+..++-+....|+.+-|...++++... + |...- +.+++ +-..|.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~--lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAML--LEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHH--HHHhhc
Confidence 567888888877652 2222 3344455556788999999999999885 3 66532 22222 456799
Q ss_pred HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHH
Q 043955 579 INEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAK 655 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~ 655 (835)
+++|.+++++..++ +| +...|--=+-++-..|+--+|++-+..- .|-.|...|.-|...+...|+++.|.-.+|
T Consensus 102 ~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999999855 47 5666776677777788877888777666 566788999999999999999999999999
Q ss_pred HHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 656 KLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 656 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+++=+.|.++-.+..|+.++.-.|--+...--|+
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999888887555444444
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.00083 Score=59.12 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=51.5
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhh
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRV 643 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~ 643 (835)
.......|++++|...|+.+...+.-.| ....+..++.++.+.|++++|.+.++.. ...|+ ..+|..+..++..
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 3334444555555555554443321111 1234444555666666666666655554 22222 3345555556666
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCc
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.|+.+.|...++++++..|+++..
T Consensus 89 ~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred hCChHHHHHHHHHHHHHCcCChhH
Confidence 677777777777777777765443
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.52 E-value=0.00068 Score=56.38 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=70.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 679 (835)
|..++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...++.+.|...++++++..|.++..+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888776 34443 3566667777777888899999999998888888888888889999999
Q ss_pred CchHHHHHHHHHH
Q 043955 680 KWKDVEQVRMRMR 692 (835)
Q Consensus 680 ~~~~a~~~~~~m~ 692 (835)
++++|.+......
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9888887765544
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.49 E-value=0.00074 Score=72.04 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=84.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhh
Q 043955 534 MINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGR 611 (835)
Q Consensus 534 li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r 611 (835)
-...+...|++++|+++|++.++ ..|+. ..|..+..++.+.|++++|+..++.+. .+.| +...|..++.+|.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHH
Confidence 34566788999999999999998 56665 567777888999999999999999887 5678 57889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 043955 612 ANHLEEAYQFVRSM-QIEPTAEVWCALLGAC 641 (835)
Q Consensus 612 ~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~ 641 (835)
.|++++|+..+++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 6667655444445444
No 150
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.49 E-value=5.4e-05 Score=49.11 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 654 AKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 654 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
++++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=9.4e-05 Score=60.52 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHH
Q 043955 612 ANHLEEAYQFVRSM----QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 612 ~g~~~eA~~~~~~m----~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
.|++++|+.+++++ |..|+...|-.+..++...|+.+.|..++++ .+.+|.++....+++.+|...|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35556666655555 3222444555566666677777777777776 666676666666778888888888888776
Q ss_pred HH
Q 043955 688 RM 689 (835)
Q Consensus 688 ~~ 689 (835)
.+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.47 E-value=0.0044 Score=56.81 Aligned_cols=123 Identities=19% Similarity=0.133 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYAC 604 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~ 604 (835)
|..++..+ ..|+...+...++++... .|+. .....+...+...|++++|...|+...... .+|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHH
Confidence 33444444 366666666667777664 3332 223334455666777777777777666442 2222 223344
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSMQIEP-TAEVWCALLGACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 657 (835)
+..++...|++++|+..++..+-.+ .+..+..+...+...|+.+.|+.+++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777777776653222 3345555556677777777777777765
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.46 E-value=0.0034 Score=69.95 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=28.6
Q ss_pred CCCChhHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHH
Q 043955 524 QTKDLILWTSMINANGLHG-----RGKVAIDLFYKMEAESFAPDHI 564 (835)
Q Consensus 524 ~~~~~~~~~~li~~~~~~g-----~~~~Al~l~~~m~~~g~~Pd~~ 564 (835)
...|...|...+.|..... ...+|+.+|++..+ ..||..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a 376 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFT 376 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcH
Confidence 3467788888888765432 36689999999988 688863
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.46 E-value=0.0013 Score=57.91 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC---CCchHHH
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN---PGNYVLI 671 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l 671 (835)
+.+...+..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+.+.|...++++++..|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667888899999999999999888 33343 3456667788889999999999999999999986 4568899
Q ss_pred HHHHHhcCCchHHHHHHHHHHcC
Q 043955 672 SNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 672 ~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
+.+|...|++++|.+..+.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999998877764
No 155
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.43 E-value=0.25 Score=52.93 Aligned_cols=127 Identities=14% Similarity=0.236 Sum_probs=81.1
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 043955 22 TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVA 101 (835)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 101 (835)
|+.+|+.||+-+... ..+++.+.++++... ++.....+..-+..-.+.++++...++|+..+..-+. ...|..-++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHHH
Confidence 788999999987655 899999999999763 3444556777788888899999999999988876544 445555554
Q ss_pred HHHh--cCChHHHH----HHHh----hcCCC-CCeeeHHHHHHH---------HHhCCChhHHHHHHHHHHH
Q 043955 102 MYAK--CYDFRKAR----QLFD----RMGEK-EDVVLWNSIISA---------YSASGQCLEALGLFREMQR 153 (835)
Q Consensus 102 ~y~~--~g~~~~A~----~~f~----~m~~~-~~~~~~n~li~~---------~~~~g~~~~A~~l~~~m~~ 153 (835)
|.+ .|+...++ +.|+ +.+.. ..-..|+..|.- |..+.+++...++|+++..
T Consensus 95 -YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 95 -YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred -HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 333 23333322 2222 22221 234457766653 2333445556667777664
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0047 Score=58.33 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD--HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|..+++... .+.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al---~~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL---ERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCcHHHHHH
Confidence 45677788888888999999999999887432222 2467777788888899999988888776 34553 556666
Q ss_pred HHHHHh-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 605 LVDLLG-------RANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 605 lv~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
+..++. +.|++++|... .+.|...++++++++|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 666666 34444443333 345677788888888865
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.0027 Score=60.15 Aligned_cols=130 Identities=11% Similarity=0.121 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD--HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYA 603 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~ 603 (835)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|..+++... .+.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---ELNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccHHHHH
Confidence 445677777778888888888888888876433332 2456677777788888888888887766 3456 356666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 604 CLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 604 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
.++.++...|+...|..-.+.. ....+.|...++++++++|++ |.-+.+.+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6777777777766655433321 122577889999999999987 5555555555554
No 158
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0011 Score=67.84 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=72.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC
Q 043955 606 VDLLGRANHLEEAYQFVRSM-QIEPT-----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 679 (835)
++-..+.|++.+|.+.+... .+.|+ +..|.....+...+|+.+.|..-.+++++++|.-..+|..-++.|...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999887 55554 4445555566778899999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHc
Q 043955 680 KWKDVEQVRMRMRG 693 (835)
Q Consensus 680 ~~~~a~~~~~~m~~ 693 (835)
+|++|.+-.+..-+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999887665443
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.33 E-value=0.00037 Score=54.43 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC-CchHHHHHHHHH
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR-KWKDVEQVRMRM 691 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m 691 (835)
++.+|..+...+...|+.+.|+..++++++++|+++..|..++.+|...| ++++|.+..++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 45678888888888888899999999999999988888889999999888 688888776543
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.33 E-value=0.00059 Score=52.52 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=23.7
Q ss_pred HhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHH
Q 043955 641 CRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 641 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
+...|+++.|+..++++++.+|+++..+..++.+|...|++++|..+.+.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444455555555555555444445555555555555554444443
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=97.32 E-value=0.002 Score=58.30 Aligned_cols=101 Identities=11% Similarity=0.003 Sum_probs=83.4
Q ss_pred CCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 593 YQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 593 ~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
.|+.++ .+..-....-+-..|++++|..+|.-. -..| ++..|..|...|...++.+.|...+..+.-++++||.++.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 366664 454445556667899999999999877 2334 4557889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHc
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..+..|...|+.+.|........+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999998765553
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00094 Score=66.26 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=89.9
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CchhHHHHHHHHHHhcCCCCCCc
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH---SNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.-+| |.+.|-.|...|.+.|+.++|...+.+. .+.| ++.+|..+..+...+ .....+..++++++.+||.|..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4468 6999999999999999999999999888 5555 455777776664433 45688999999999999999999
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCc
Q 043955 668 YVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 668 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g 701 (835)
..+|+-.+...|++.+|...++.|-+..-...|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999998765443343
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0019 Score=61.03 Aligned_cols=91 Identities=11% Similarity=-0.097 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
...|..++..+...|++++|+..+++. .+.|+ +.+|..+...+...|+.+.|+..++++++++|.+...+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777788888999998888776 33333 3478888888999999999999999999999999999999999
Q ss_pred HHH-------hcCCchHHHHHHH
Q 043955 674 VFA-------ASRKWKDVEQVRM 689 (835)
Q Consensus 674 ~y~-------~~g~~~~a~~~~~ 689 (835)
+|. ..|++++|....+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 999 7778776654443
No 164
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.034 Score=54.03 Aligned_cols=154 Identities=17% Similarity=0.089 Sum_probs=75.2
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----cccCcH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYAC----SHSGLI 579 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~----~~~g~~ 579 (835)
...|.+.|++++|.+.......-+....|. ..+.+..+.+-|.+..++|++ + -+..|.+-|..|+ .-.+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhh
Confidence 334566667777766666533333333332 223344456666666666665 2 2333444333333 233445
Q ss_pred HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH-HHhhcCchhHHHHHHHH
Q 043955 580 NEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLG-ACRVHSNKELGEIVAKK 656 (835)
Q Consensus 580 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~-a~~~~~~~~~a~~~~~~ 656 (835)
.+|.-+|+.|..++ .|++...+.+..+....|+++||+.+++.. .-..++.+...++- +....++.+.-++-..+
T Consensus 190 qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 56666666665332 344444444555555556666666655555 11123333333332 22233344555555555
Q ss_pred HHhcCCCC
Q 043955 657 LLELDPGN 664 (835)
Q Consensus 657 ~~~l~p~~ 664 (835)
+....|+.
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 65556654
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.0026 Score=62.74 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=81.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCC
Q 043955 537 ANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANH 614 (835)
Q Consensus 537 ~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~ 614 (835)
-+.+.+++++|+..|.+.++ +.|+. +-|..-..|+++.|..+.|++-.++.. .++|. ...|.-|.-+|.-.|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 45678899999999999998 77765 455666778999999999999888776 78885 7899999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHH
Q 043955 615 LEEAYQFVRSM-QIEPTAEVWCALL 638 (835)
Q Consensus 615 ~~eA~~~~~~m-~~~p~~~~~~~ll 638 (835)
+++|++.|++. .++|+..+|.+=|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999887 8999877654433
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.20 E-value=0.003 Score=52.34 Aligned_cols=89 Identities=21% Similarity=0.118 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
|..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|.++|+.... +.| +...+..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE---LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcchhHHHHHHHH
Confidence 445555666666666777666666652 3332 3444445555555666666665555442 222 12344444444
Q ss_pred HhhcCCHHHHHHHHHh
Q 043955 609 LGRANHLEEAYQFVRS 624 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~ 624 (835)
+...|+.++|.+.+++
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4444444444444433
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.29 Score=50.97 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~ 477 (835)
..+..+.-+...|+...|.++-.+..-||-.-|-..|.+|+..++|++-.++... +-.++-|..++.+|...|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455667789999999999999889999999999999999999877665332 2346889999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHh
Q 043955 478 LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVF 520 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f 520 (835)
..+|..+...+ .+..-+.+|.+||++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88888776651 2267789999999999997763
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.15 E-value=0.003 Score=59.89 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
...|..++..+.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+.|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666777777777777777777665 22222 3467777778888899999999999999999988888888888
Q ss_pred HHHhcCC
Q 043955 674 VFAASRK 680 (835)
Q Consensus 674 ~y~~~g~ 680 (835)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888777
No 169
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.026 Score=54.33 Aligned_cols=180 Identities=17% Similarity=0.108 Sum_probs=131.0
Q ss_pred CCCch-hHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043955 493 FNLEG-SVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSM---INANGLHGRGKVAIDLFYKMEAESFAPDHITFLA 568 (835)
Q Consensus 493 ~~~~~-~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ 568 (835)
..++. .++.-+.-+..-+|+.+.|...++.+..+-+-|...+ ..-+-..|++++|+++++..++.. +.|.+++.-
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 44453 4555566666789999999999998764323232222 123456799999999999999874 445678887
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHS- 645 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~- 645 (835)
-+...-..|..-+|++-+....+.| --|.+.|.-+.++|...|.+++|.-.++++ -+.| ++.....|.......|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 7777777888888888877766543 237888999999999999999999999998 4555 4455666666655543
Q ss_pred --chhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 646 --NKELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 646 --~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
|.+.+...+++++++.|.+ .+.|.-||-..
T Consensus 204 ~eN~~~arkyy~~alkl~~~~---~ral~GI~lc~ 235 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKN---LRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHh---HHHHHHHHHHH
Confidence 6788999999999999965 44555555543
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.00084 Score=51.67 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=52.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPTA-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
++..+.+.|++++|.+.+++. ...|+. .+|..+..++...|+.+.|...++++++++|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567888999999999999998 666754 4898999999999999999999999999999874
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.12 E-value=0.0088 Score=54.47 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=79.8
Q ss_pred hhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC--
Q 043955 589 MRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM---QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG-- 663 (835)
Q Consensus 589 m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~-- 663 (835)
..++..+.|++.+-.-+...+.+.|+..||...+++. ++.-|+.+.-.|..+-..-++...|....+++.|-.|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3445567788777777888888888888888888776 56667777777777777778888888888888888874
Q ss_pred CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 664 NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 664 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.|....+++..|+..|+..+|+...+..-+
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 566777888888888888888776665543
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.12 E-value=0.0053 Score=68.43 Aligned_cols=131 Identities=12% Similarity=0.030 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHhccc-----CcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHh
Q 043955 559 FAPDHITFLALLYACSHS-----GLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRA--------NHLEEAYQFVRS 624 (835)
Q Consensus 559 ~~Pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~--------g~~~eA~~~~~~ 624 (835)
..+|...|...+.+..+. +..+.|..+|++.. .++|+ ...|+.+..++... +++.+|.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 456667788888875443 23778999999887 67896 56666554443221 234556666555
Q ss_pred C---CCC-CCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 625 M---QIE-PTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 625 m---~~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
. +.. .++.++.++.-.....|+.+.|...++++++++| +..+|++++.+|...|+.++|.+..+....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 223 3556777776666678999999999999999999 578999999999999999999998766554
No 173
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.08 E-value=0.11 Score=60.84 Aligned_cols=149 Identities=10% Similarity=0.109 Sum_probs=108.9
Q ss_pred hhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 043955 362 VMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNG 441 (835)
Q Consensus 362 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 441 (835)
...+..+..+|-+.|..+++.++++.+++..+.+..+.|.+...|+.. ++++|..++.+. +..|...+
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 345566666777888888888888888888877888999999999999 999999887554 44588888
Q ss_pred ChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChhhHHHHh
Q 043955 442 LANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRK-GFNLEGSVASSLVDMYARCGALDIANKVF 520 (835)
Q Consensus 442 ~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f 520 (835)
++.++++++.++... .|+.+.+ -.++...+... |+.--+.++-.|.+-|-+..+++++..+|
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999999999873 4554433 12233333332 44444556667778888888999999999
Q ss_pred hhCCC---CChhHHHHHHHHHH
Q 043955 521 NCVQT---KDLILWTSMINANG 539 (835)
Q Consensus 521 ~~~~~---~~~~~~~~li~~~~ 539 (835)
..+.+ .|.-...-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 88764 45556666777775
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.05 E-value=0.011 Score=51.40 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=71.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 043955 533 SMINANGLHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLL 609 (835)
Q Consensus 533 ~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l 609 (835)
.+..++-..|+.++|+.+|++....|..+.. ..+..+.+++.+.|++++|..+|+.....+.-.+ +......+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556788899999999999999998877663 4677888999999999999999998887653322 222333455678
Q ss_pred hhcCCHHHHHHHHHh
Q 043955 610 GRANHLEEAYQFVRS 624 (835)
Q Consensus 610 ~r~g~~~eA~~~~~~ 624 (835)
...|+.+||.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 889999999987654
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.0011 Score=51.56 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=34.6
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
..|+++.|+..++++++.+|+++..+..|+.+|...|++++|.++.+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777777777766533
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.01 E-value=0.02 Score=51.67 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHH
Q 043955 525 TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHY 602 (835)
Q Consensus 525 ~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y 602 (835)
+.+....-++..-+.+.|+.++|..+|+-... +.|... -|.+|...|...|++++|+..|.... -++| ++..|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~ 106 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHH
Confidence 33444445555556666777777777776665 555543 34555555666677777777666554 4455 35666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh
Q 043955 603 ACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
-.+..++...|+.++|.+.|+.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666666654
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.01 E-value=0.00048 Score=53.61 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=30.9
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVW 634 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~ 634 (835)
..|++++|.++|+.+.. ..| +.+.+..++.+|.+.|++++|.+.++++ ...|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 34566666666665552 244 3555555666666666666666666665 344543333
No 178
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.94 E-value=0.002 Score=50.18 Aligned_cols=64 Identities=25% Similarity=0.275 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC-chhHHHHHHHHHHhcCC
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHS-NKELGEIVAKKLLELDP 662 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~l~p 662 (835)
+..|..++..+.+.|++++|++.+++. .+.|+ +.+|..+..++...| +.+.|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777888888888888888888776 56674 448888888888888 79999999999999988
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.92 E-value=0.68 Score=48.25 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=82.5
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 583 (835)
|.-+...|....|.++.....-||..-|-..|.+|+..|++++-.++... .-. .+-|..++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHHHCCCHHHHH
Confidence 44445668888888888888778888888888888888888776654322 122 366777788888888888888
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 043955 584 KFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVH 644 (835)
Q Consensus 584 ~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 644 (835)
.|...+. +.--+++|.+.|.+.+|.+.--+. -|...+..+...|..+
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCCCC
Confidence 8877532 234577788888888887765443 3444555555544433
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.84 E-value=0.0024 Score=50.41 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..+...++.+.|..+++++++++|+++..+..++.+|...|+|++|.+..+..-+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566777888888888888888888888888888888888888888777665543
No 181
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.15 Score=49.70 Aligned_cols=139 Identities=14% Similarity=0.084 Sum_probs=91.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHH----HHHHHHhh
Q 043955 536 NANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYA----CLVDLLGR 611 (835)
Q Consensus 536 ~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~----~lv~~l~r 611 (835)
..|...|++++|++..+... ..+....+. ....+..++|-|.+-++.|. .++- -.+.+ ..|.+..-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq---~ide-d~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAALNV--QILLKMHRFDLAEKELKKMQ---QIDE-DATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---ccch-HHHHHHHHHHHHHHhcc
Confidence 34667788888888877621 222222211 12345567788888888887 3332 22333 34445555
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHH
Q 043955 612 ANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDV 684 (835)
Q Consensus 612 ~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 684 (835)
.+++.+|+=++++| ...|++.+.+-.+.+|-..||.+.|+...+.++..+|++|.....+.-.---.|+-.++
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 66888999999988 36788888888888888889999999999999988888866654444444445655554
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.81 E-value=0.019 Score=58.99 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA-CSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDL 608 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 608 (835)
+|..++....+.+..+.|-.+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++- +.+.+.+.++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 56667777767766777777777776432 1122233333222 33355666688888877766533 45667777888
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCC---HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 609 LGRANHLEEAYQFVRSM--QIEPT---AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m--~~~p~---~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
+.+.|+.+.|..++++. .+.++ ..+|...+.--..+|+++....+.+++.++-|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888887 22222 34899999999999999999999999999988743
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=0.91 Score=46.84 Aligned_cols=234 Identities=18% Similarity=0.195 Sum_probs=148.3
Q ss_pred hCCChHHHHHHHHHHhhcCCcCCh--hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhH
Q 043955 439 HNGLANEALELFYLMNEANVESDS--ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIA 516 (835)
Q Consensus 439 ~~g~~~~Al~lf~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 516 (835)
-.|++++|.+-|+.|.. .|.. .-+..+.-..-.+|+.+.++++-+..-..-- .-.....++++..+..|+.+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHH
Confidence 35777777777777764 1211 1223333344556777777766655544321 1245567788888888999999
Q ss_pred HHHhhhCC-----CCChh--HHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcccCcHHHHHHH
Q 043955 517 NKVFNCVQ-----TKDLI--LWTSMINANGLH---GRGKVAIDLFYKMEAESFAPDHIT-FLALLYACSHSGLINEGKKF 585 (835)
Q Consensus 517 ~~~f~~~~-----~~~~~--~~~~li~~~~~~---g~~~~Al~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~ 585 (835)
+++.+.-. ++|+. .-..|+.+-++. -+...|...-.+..+ +.||-+- -+.--.++.+.|++.+|-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 98887543 45543 233344333322 245566666555555 7888653 34445678899999999999
Q ss_pred HHHhhhcCCCCCChhHHHHHHHHHhhcCC-----HHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 586 LEIMRCDYQLDPWPEHYACLVDLLGRANH-----LEEAYQFVRSMQIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 586 ~~~m~~~~~i~p~~~~y~~lv~~l~r~g~-----~~eA~~~~~~m~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
++.+- ..+|.++.....+ ..|.|+ ++.|..+ + .++|+.. ..-++..+-...|++..|...++.+..
T Consensus 286 lE~aW---K~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L-~--slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 286 LETAW---KAEPHPDIALLYV--RARSGDTALDRLKRAKKL-E--SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHH---hcCCChHHHHHHH--HhcCCCcHHHHHHHHHHH-H--hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99887 4567766554333 345564 2222222 2 4577654 455566777888999999999999999
Q ss_pred cCCCCCCchHHHHHHHHhc-CCchHHHHH
Q 043955 660 LDPGNPGNYVLISNVFAAS-RKWKDVEQV 687 (835)
Q Consensus 660 l~p~~~~~~~~l~~~y~~~-g~~~~a~~~ 687 (835)
.+|. .+.|.+|++|-... |+-+++..+
T Consensus 358 ~~pr-es~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 358 EAPR-ESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred hCch-hhHHHHHHHHHhhccCchHHHHHH
Confidence 9997 46788999987765 765555444
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.70 E-value=0.078 Score=54.76 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred hccc-CcHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC---CHHHHHHHHHH-
Q 043955 573 CSHS-GLINEGKKFLEIMRCDYQLDPW----PEHYACLVDLLGRANHLEEAYQFVRSM---QIEP---TAEVWCALLGA- 640 (835)
Q Consensus 573 ~~~~-g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p---~~~~~~~ll~a- 640 (835)
|... |++++|.++|+....-|..... ...+.-+++++.+.|++++|.+++++. ..+. ...+-..++.+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3444 5555555555554433321111 344556677777777777777777765 1111 11121222222
Q ss_pred --HhhcCchhHHHHHHHHHHhcCCCCCCc--hHHHHHHHH
Q 043955 641 --CRVHSNKELGEIVAKKLLELDPGNPGN--YVLISNVFA 676 (835)
Q Consensus 641 --~~~~~~~~~a~~~~~~~~~l~p~~~~~--~~~l~~~y~ 676 (835)
+...||...|...+++..+.+|.-..+ +.++.++..
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 234477778888888888787754333 455554443
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.70 E-value=0.13 Score=53.11 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=72.3
Q ss_pred HHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHhcc
Q 043955 503 LVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLH-GRGKVAIDLFYKMEAE----SFAPDH--ITFLALLYACSH 575 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~----g~~Pd~--~t~~~ll~a~~~ 575 (835)
.++.|.+.|++..|-+++. .+...|... |++++|++.|++..+. | .|.. ..+..+...+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 3455666666666555443 344556566 6777777777665542 2 1111 234455556667
Q ss_pred cCcHHHHHHHHHHhhhcCCC----CCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----C--HHHHHHHHHHHhh
Q 043955 576 SGLINEGKKFLEIMRCDYQL----DPWP-EHYACLVDLLGRANHLEEAYQFVRSM-QIEP----T--AEVWCALLGACRV 643 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i----~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p----~--~~~~~~ll~a~~~ 643 (835)
.|++++|.++|+......-- .++. .+|-..+-++...|++-.|.+.+++. ...| + ......|+.+|..
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 77777777777766543211 1122 23334444555567777777777664 2222 1 2245566666654
Q ss_pred c--CchhHHHHHHHHHHhcCC
Q 043955 644 H--SNKELGEIVAKKLLELDP 662 (835)
Q Consensus 644 ~--~~~~~a~~~~~~~~~l~p 662 (835)
. ..++.+..-++++-+|||
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---H
T ss_pred CCHHHHHHHHHHHcccCccHH
Confidence 3 223444444444444444
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.68 E-value=0.016 Score=62.01 Aligned_cols=117 Identities=7% Similarity=0.078 Sum_probs=80.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhcCCCCC-----eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 043955 92 TDFIVNSLVAMYAKCYDFRKARQLFDRMGEKED-----VVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAA 166 (835)
Q Consensus 92 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-----~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 166 (835)
+......+++......+++.+..++-+....|+ ..|..++|+.|...|..++++.+++.=...|+-||.+||+.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 344445555555555666667777666533222 234568888888888888888888888888888888888888
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 043955 167 LQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARC 208 (835)
Q Consensus 167 l~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 208 (835)
|+.+.+.|++..|.++...|+..+...+..++..-+..+.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888887777776655555555444444444
No 187
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.66 E-value=0.0045 Score=50.46 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=53.3
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESF-APDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA 618 (835)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5788888888888887422 12344555577788888888888888876 2 33342 33333457788888888888
Q ss_pred HHHHHh
Q 043955 619 YQFVRS 624 (835)
Q Consensus 619 ~~~~~~ 624 (835)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.64 E-value=0.017 Score=61.82 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=101.2
Q ss_pred CCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhC--CCCCcchHHHHHHHHHhcCChHHHHHHHhhc---CCCCCee
Q 043955 52 LGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCG--YDSTDFIVNSLVAMYAKCYDFRKARQLFDRM---GEKEDVV 126 (835)
Q Consensus 52 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~ 126 (835)
.+.+.+......++..+....+++.+..+.-...... ...-..+..++|..|.+.|..+.+..+++.= +.-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3556677788899999998888888888877776552 2223445679999999999999999999863 5559999
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcC
Q 043955 127 LWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDS 173 (835)
Q Consensus 127 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 173 (835)
++|.|+..+.+.|++..|.++...|...+...+..|+.-.+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999888888889988888877654
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.56 E-value=0.034 Score=52.68 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=69.0
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 476 SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+.+ | . -...+.+-|++++++|.
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-------F----~--hyp~Qq~c~i~lL~qME 130 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-------F----M--HYPRQQECAIDLLEQME 130 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-------h----c--cCcHHHHHHHHHHHHHH
Confidence 3444444556677778888888888888887765 4332 11222211 1 0 12235677999999999
Q ss_pred HCCCCCCHHHHHHHHHHhcccCcH-HHHHHHHHHhhhcCCCCCC
Q 043955 556 AESFAPDHITFLALLYACSHSGLI-NEGKKFLEIMRCDYQLDPW 598 (835)
Q Consensus 556 ~~g~~Pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~i~p~ 598 (835)
..|+.||..|+..|+..+.+.+.. ...+++.--|.+-.+++|-
T Consensus 131 ~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~ 174 (228)
T PF06239_consen 131 NNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPW 174 (228)
T ss_pred HcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999998777653 3334444444443355553
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.56 E-value=0.03 Score=57.58 Aligned_cols=84 Identities=12% Similarity=0.220 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTK------DLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
.|..|++...+. +..+...+...++++.+.|+.+.|+.+|++.... -...|...+.--.++|+.+.+.++.++
T Consensus 54 ~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 54 RARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444433 4456677888889999999999999999987642 235899999999999999999999999
Q ss_pred HHHCCCCCCHHHH
Q 043955 554 MEAESFAPDHITF 566 (835)
Q Consensus 554 m~~~g~~Pd~~t~ 566 (835)
+.+ .-|+..++
T Consensus 133 ~~~--~~~~~~~~ 143 (280)
T PF05843_consen 133 AEE--LFPEDNSL 143 (280)
T ss_dssp HHH--HTTTS-HH
T ss_pred HHH--HhhhhhHH
Confidence 988 45554333
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.54 E-value=0.0027 Score=44.18 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
.+|..|..++...|+.+.|+.+++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888899999999999999999999999999988887764
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.50 E-value=0.018 Score=48.13 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCCccHHHHHHHHhccC--------CchHHHHHHHHHHHhCCCCCcchHH
Q 043955 27 NAMLGAYVSNGEPLRVLETYSRMRVLGI-SVDAFTFPCVIKACAMLK--------DLDCGAKIHGLVLKCGYDSTDFIVN 97 (835)
Q Consensus 27 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~~~ 97 (835)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4466667778999999999999999999 899999999999887654 2335677888999999999999999
Q ss_pred HHHHHHHh
Q 043955 98 SLVAMYAK 105 (835)
Q Consensus 98 ~Li~~y~~ 105 (835)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887665
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.42 E-value=0.0066 Score=47.88 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=51.3
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 607 DLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
.+|.+.+++++|.+.++.+ .+.|+ +..|..+...+...|+.+.|...++++++..|+++....+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5677888999999998888 56664 4477777778888899999999999999999987655443
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.34 E-value=0.028 Score=48.89 Aligned_cols=84 Identities=15% Similarity=0.054 Sum_probs=57.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---CCCC-C-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC---CCCchHHHHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSM---QIEP-T-AEVWCALLGACRVHSNKELGEIVAKKLLELDPG---NPGNYVLISNVFA 676 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m---~~~p-~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~ 676 (835)
+..++-..|+.++|+.++++. ...+ + ...+-.|.++++..|+.+.|..++++.++-.|+ +....+.++-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555667777777777665 2111 1 224556667788888888888888888877777 6666777788888
Q ss_pred hcCCchHHHHHH
Q 043955 677 ASRKWKDVEQVR 688 (835)
Q Consensus 677 ~~g~~~~a~~~~ 688 (835)
..|++++|.++.
T Consensus 87 ~~gr~~eAl~~~ 98 (120)
T PF12688_consen 87 NLGRPKEALEWL 98 (120)
T ss_pred HCCCHHHHHHHH
Confidence 888888887664
No 195
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.30 E-value=0.29 Score=51.48 Aligned_cols=158 Identities=17% Similarity=0.098 Sum_probs=96.9
Q ss_pred HHHHHhcCChhhHHHHhhhCCCC---Ch----hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043955 504 VDMYARCGALDIANKVFNCVQTK---DL----ILWTSMINANGL---HGRGKVAIDLFYKMEAESFAPDHITFLALLYAC 573 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~ 573 (835)
+-.|-...+++.-.++++.+... ++ ..--...-++-+ .|+.++|++++..+....-.++.-||..+...+
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 33466677777777777766643 11 112233444555 688888888888866665666666665554432
Q ss_pred ---------cccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHH----HHHHH---Hh-----CCCCC--C
Q 043955 574 ---------SHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEE----AYQFV---RS-----MQIEP--T 630 (835)
Q Consensus 574 ---------~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~e----A~~~~---~~-----m~~~p--~ 630 (835)
......++|...|.. .|.++|+..+--.++-++..+|.-.+ ..++. .. -..++ |
T Consensus 228 KD~~~~s~~~d~~~ldkAi~~Y~k---gFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 228 KDLFLESNFTDRESLDKAIEWYRK---GFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHcCccchHHHHHHHHHHHH---HHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 122346777777763 45677765443344455555554222 22222 11 12233 4
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
-....+++.++...||.+.|..++++++.+.|..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 4456789999999999999999999999998764
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.30 E-value=0.35 Score=52.72 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=60.7
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINE 581 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 581 (835)
+-..|+...|+.+.|..+ .+.+|-.+-++++-+++-. .+..+...+-.-+-+...+.-
T Consensus 708 aAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccch
Confidence 344566667777776654 3445555555555555432 223333333333445555666
Q ss_pred HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH
Q 043955 582 GKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQ-IEPTAE 632 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~ 632 (835)
|-++|.+|-. ...+|++....|+++||..+-++.| +.||..
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 7778877642 2467888888999999999888885 566654
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.28 E-value=0.26 Score=53.71 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhc
Q 043955 141 CLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQ 220 (835)
Q Consensus 141 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 220 (835)
+-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|-++|. +.|.+ |.-+.+|.....++.|.++...
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 33455567788888888886543 334677788888877764 45554 5667777777777777777654
Q ss_pred C
Q 043955 221 L 221 (835)
Q Consensus 221 ~ 221 (835)
-
T Consensus 684 g 684 (1081)
T KOG1538|consen 684 G 684 (1081)
T ss_pred C
Confidence 3
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.24 E-value=0.043 Score=52.05 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=77.1
Q ss_pred HHHhhhC--CCCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc-------------
Q 043955 517 NKVFNCV--QTKDLILWTSMINANGLH-----GRGKVAIDLFYKMEAESFAPDHITFLALLYACSHS------------- 576 (835)
Q Consensus 517 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~------------- 576 (835)
...|+.. ..+|..++..+|..|.++ |+.+=....++.|.+-|+.-|-.+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556655 467778888888887754 66676777788899999999999999998866542
Q ss_pred ---CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCH
Q 043955 577 ---GLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHL 615 (835)
Q Consensus 577 ---g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~ 615 (835)
.+.+-|+++++.|. .+|+-||.+++..+++++|+.+..
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 23467899999997 569999999999999999988763
No 199
>PRK11906 transcriptional regulator; Provisional
Probab=96.20 E-value=0.09 Score=55.98 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=108.0
Q ss_pred hHH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcc----------cCcHHHHHHHHHHhh
Q 043955 529 ILW--TSMINANGLHG-----RGKVAIDLFYKMEA-ESFAPDHITFLALLYACSH----------SGLINEGKKFLEIMR 590 (835)
Q Consensus 529 ~~~--~~li~~~~~~g-----~~~~Al~l~~~m~~-~g~~Pd~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~ 590 (835)
..| ..++.|....- ..+.|+.+|.+... +.+.|+...-.+.+.-|.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 55555554421 35678999999982 2378886543333333321 223455666665555
Q ss_pred hcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 591 CDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 591 ~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.+.| |+.....++-+++-.|+++.|...+++. .+.||.. +|......+.-.|+.+.|.+..+++++++|...++
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 7778 6778888888888888899999999998 6778654 77777777778899999999999999999987766
Q ss_pred hHHHHHH--HHhcCCchHHHHHH
Q 043955 668 YVLISNV--FAASRKWKDVEQVR 688 (835)
Q Consensus 668 ~~~l~~~--y~~~g~~~~a~~~~ 688 (835)
-++--++ |.. ...++|.++.
T Consensus 409 ~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcC-CchhhhHHHH
Confidence 6554444 544 4466666654
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.17 E-value=0.1 Score=52.72 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=49.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCC
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANH 614 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 614 (835)
...|++++|+..|+.++. ..|+. ..+..+..++...|++++|...|+.+.+.|.-.|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~---------------- 215 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK---------------- 215 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc----------------
Confidence 344666666666666665 33443 23334444555555555555555555544333221
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 615 LEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 615 ~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
.+..|-.+...+...|+.+.|...++++++..|+..
T Consensus 216 ---------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 216 ---------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ---------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 112333334445566777777777777777777643
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.25 Score=47.94 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=91.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHh-----CCCCchhHHHHHHH
Q 043955 431 TSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRK-----GFNLEGSVASSLVD 505 (835)
Q Consensus 431 ~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~~~~li~ 505 (835)
+.++..+.-.|.+.-.+.++.+..+...+-++.-...+.+.-.+.|+.+.++..++.+.+. +......+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3455555556677777777777777554455555666666667778888887777776664 23333334444444
Q ss_pred HHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043955 506 MYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLAL 569 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~l 569 (835)
.|.-..+..+|.+.|+++.. .|++.-|.-.-...-.|+..+|++..+.|.+ ..|...+-.++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 56666788888888887764 4667777766666778899999999999988 56665544433
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.13 E-value=0.056 Score=45.32 Aligned_cols=79 Identities=9% Similarity=0.056 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHhhcCC--------ChhHHHHHHHHHHHhCCCCchhHHH
Q 043955 129 NSIISAYSASGQCLEALGLFREMQRVGL-VTNAYTFVAALQACEDSS--------FETLGMEIHAATVKSGQNLQVYVAN 199 (835)
Q Consensus 129 n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~l~~~~~~~g~~~~~~~~~ 199 (835)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.+|++.++.. .+-....+++.++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667889999999999999998 899999999998866543 2334556777788888888888888
Q ss_pred HHHHHHHh
Q 043955 200 ALIAMYAR 207 (835)
Q Consensus 200 ~li~~y~~ 207 (835)
.++....+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766544
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.84 Score=47.52 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=66.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhh
Q 043955 538 NGLHGRGKVAIDLFYKMEAESFAPDH-----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGR 611 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r 611 (835)
..+.|++..|.+.|.+.+. +.|+. ..|.....+..+.|+.++|+.-.+... .|+|. +..|---..++.-
T Consensus 259 ~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred HhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3445555555555555544 33332 223333334445555555555444333 34443 2333333333333
Q ss_pred cCCHHHHHHHHHhC-CCCCC------------------HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC-CCCc----
Q 043955 612 ANHLEEAYQFVRSM-QIEPT------------------AEVWCALLGACRVHSNKELGEIVAKKLLELDPG-NPGN---- 667 (835)
Q Consensus 612 ~g~~~eA~~~~~~m-~~~p~------------------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~-~~~~---- 667 (835)
.++|++|.+-+++. ..+.+ ..-|-..|+.-+...+.+......+.++...|+ +++.
T Consensus 334 le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~ea 413 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEA 413 (486)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHH
Confidence 44555555444443 11111 112445555556666666666666667777776 3333
Q ss_pred ---hHHHHHHHHhcCCchHHH
Q 043955 668 ---YVLISNVFAASRKWKDVE 685 (835)
Q Consensus 668 ---~~~l~~~y~~~g~~~~a~ 685 (835)
..-.++.|...++..+..
T Consensus 414 E~kFkevgeAy~il~d~~kr~ 434 (486)
T KOG0550|consen 414 EAKFKEVGEAYTILSDPMKRV 434 (486)
T ss_pred HHHHHHHHHHHHHhcCHHHHh
Confidence 233444555555554443
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.04 E-value=0.019 Score=60.88 Aligned_cols=61 Identities=16% Similarity=-0.013 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc---hHHHHHHHHhcCCchHHHHHHHHH
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN---YVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
+..|..|..++...|+++.|...++++++++|+++.+ |..++.+|+..|+.++|....+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3355566556666666666666666666666655533 556666666666666665554433
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.02 E-value=0.074 Score=53.75 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC---CchHHH
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP---GNYVLI 671 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l 671 (835)
..|..-++++.+.|++++|...++.. ...|+ +.++-.|..++...|+.+.|...++++++..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667777777666655 22232 23455577778889999999999999999988754 456677
Q ss_pred HHHHHhcCCchHHHHHHHHHHc
Q 043955 672 SNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 672 ~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.+|...|++++|.++.+...+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999876654
No 206
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.96 E-value=1.8 Score=42.42 Aligned_cols=192 Identities=20% Similarity=0.128 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQ-----TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY 571 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~ 571 (835)
..........+...+.+..+...+.... ......+..+...+...+...++++.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 4455666667777777777777776543 234456666677777777788888888887764333312 1222222
Q ss_pred -HhcccCcHHHHHHHHHHhhhcCCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHhh
Q 043955 572 -ACSHSGLINEGKKFLEIMRCDYQLDP----WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT--AEVWCALLGACRV 643 (835)
Q Consensus 572 -a~~~~g~~~~a~~~~~~m~~~~~i~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~a~~~ 643 (835)
++...|..+++...|..... ..| ....+......+...|+.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888887642 333 2344444445566778888888887776 44444 4567777777777
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.++.+.+......+++..|.....+..++.++...|.++++........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888888766667777777777777788776655444
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.88 E-value=3.9 Score=45.53 Aligned_cols=282 Identities=14% Similarity=0.127 Sum_probs=131.3
Q ss_pred hhhhhccCChhHHHHHHHhcCCC-----CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccC
Q 043955 303 MDMYAKCCCVNYMGRVFYQMTAQ-----DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKC 377 (835)
Q Consensus 303 i~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 377 (835)
|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-... ...+.++.+...
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 45555556655555555443221 1235666666666666666666665442210 011112222222
Q ss_pred chHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcC
Q 043955 378 MSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEAN 457 (835)
Q Consensus 378 ~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g 457 (835)
++. ++.+.+.-+++....-.+.+|+.+.|.-++|.+.|-+-..|- +-+..|...+++.+|.++-++.+-
T Consensus 838 f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l-- 906 (1189)
T KOG2041|consen 838 FGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL-- 906 (1189)
T ss_pred hhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc--
Confidence 211 111222233444567777777777777777777766554442 234566666777777777665542
Q ss_pred CcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChh---HHHHH
Q 043955 458 VESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLI---LWTSM 534 (835)
Q Consensus 458 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~l 534 (835)
|...|+ +.- .+-++++ +.. .---|.++-|.|+.-+|.++..+|.++... .+--+
T Consensus 907 --~qv~tl---iak--------~aaqll~---~~~-------~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~ 963 (1189)
T KOG2041|consen 907 --PQVQTL---IAK--------QAAQLLA---DAN-------HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRL 963 (1189)
T ss_pred --hhHHHH---HHH--------HHHHHHh---hcc-------hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHH
Confidence 222222 111 1111111 100 112367788888887777777776542111 01100
Q ss_pred ----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 043955 535 ----INANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLG 610 (835)
Q Consensus 535 ----i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 610 (835)
+-+-.-..+..++++-.++....|...|... +...|...++-++.+..-+ | ....|+-.|..--.
T Consensus 964 KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql 1032 (1189)
T KOG2041|consen 964 KKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQRQL 1032 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHH
Confidence 0011111223344444444444443333321 1233334444444332210 1 12344444555556
Q ss_pred hcCCHHHHHHHHHhC----CCCCCHHHHHHHH
Q 043955 611 RANHLEEAYQFVRSM----QIEPTAEVWCALL 638 (835)
Q Consensus 611 r~g~~~eA~~~~~~m----~~~p~~~~~~~ll 638 (835)
+.|+++.|++---.. .+-|-..+|.-|.
T Consensus 1033 ~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1033 FEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred HhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 788998888653333 3445455665443
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.87 E-value=0.63 Score=46.62 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=43.2
Q ss_pred HhhcCchhHHHHHHHHHHhcCCCCC---CchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 641 CRVHSNKELGEIVAKKLLELDPGNP---GNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 641 ~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.+.|+..-|..-++.+++--|+.+ .+...|.+.|...|.-++|..+++.+..
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 5566788888888999999888754 4567889999999999999998876653
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.83 E-value=0.077 Score=46.67 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhh--------------hcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 043955 562 DHITFLALLYACSHSGLINEGKKFLEIMR--------------CDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-- 625 (835)
Q Consensus 562 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-- 625 (835)
|+.++..++.|+++.|.++....+.++.- ....+.|+.....+++..|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455566666666666666555554321 22345577888889999999999999999887765
Q ss_pred --CCCCCHHHHHHHHHHHhhcCc
Q 043955 626 --QIEPTAEVWCALLGACRVHSN 646 (835)
Q Consensus 626 --~~~p~~~~~~~ll~a~~~~~~ 646 (835)
|++-+..+|..|+.=|...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 666667889999866555433
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=4.7 Score=45.50 Aligned_cols=326 Identities=13% Similarity=0.012 Sum_probs=162.0
Q ss_pred HHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccC---ChhHHHHHHHhcCC--CCcccHHHHHHHHHhc
Q 043955 266 NAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCC---CVNYMGRVFYQMTA--QDFISWTTIIAGYAQN 340 (835)
Q Consensus 266 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~ 340 (835)
.++.-....+.+..|.|+-..+-..-... ..++.....-+.+.. +-+-+..+=+++.. .+-++|..+.+--.+.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 34445555566666666655443211111 445555555555542 23334444455555 5678888888888889
Q ss_pred CChHHHHHHHHHHHHcCCC----CChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHH
Q 043955 341 NCHLKALELFRTVQLEGLD----ADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSR 416 (835)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 416 (835)
|+.+-|..+++.=...+-. .+..-+...|.-+...|+.+...++.-++.+.-... +......+...|.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s--------~l~~~l~~~p~a~ 592 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS--------SLFMTLRNQPLAL 592 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--------HHHHHHHhchhhh
Confidence 9999888887643222110 111223344444555566555555444433321100 0000011122222
Q ss_pred HHHHhcCC-CCchhHHHHHHHHHhCCChHHHHHHH--HHHh----hcCCcCChhhhHhHHHHhhcccchhhHHHHHHH-H
Q 043955 417 NVFESIES-KDVVSWTSMISSYVHNGLANEALELF--YLMN----EANVESDSITLVSALSAASSLSILKKGKELNGF-I 488 (835)
Q Consensus 417 ~~f~~~~~-~~~~~~~~li~~~~~~g~~~~Al~lf--~~m~----~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~-~ 488 (835)
.++.+.-. .|.. .+-+-|-+..+.. ++.-| +... ..|..|+ ....-.+|++......+.+..+. +
T Consensus 593 ~lY~~~~r~~~~~---~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDRA---TLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhchh---hhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 22222111 1110 0111122222222 22111 1100 1122233 23334445444332222111111 1
Q ss_pred ----------HHhCC-CCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043955 489 ----------IRKGF-NLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAE 557 (835)
Q Consensus 489 ----------~~~g~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 557 (835)
.+.|. -.|..+.-. +.-+..-|....|.++-.+..-||-..|---+.+++..+++++-+++-+.+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dT-v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDT-VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHH-HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 11222 223333322 33344668888888888888878888887788888888888876666555431
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 558 SFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 558 g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
.+-|.-...+|...|+.+||.+|+.... | +.-.+++|.+.|.+.||.++--+
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv~---~-------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRVG---G-------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhccC---C-------hHHHHHHHHHhccHHHHHHHHHH
Confidence 3445566778888888888888876443 1 11467888888888888776443
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.74 E-value=0.056 Score=46.27 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=61.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC----CchHHHHHHHHhcCC
Q 043955 607 DLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP----GNYVLISNVFAASRK 680 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~ 680 (835)
-+++.+|++++|++.|.+. .+-| .+.+||.-..++|.+|+.+.|..-.++++++.-+.. .+|+.-+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566677777777777665 3343 556777777788888888888888888877754332 247777778888888
Q ss_pred chHHHHHHHHHHcCC
Q 043955 681 WKDVEQVRMRMRGSG 695 (835)
Q Consensus 681 ~~~a~~~~~~m~~~~ 695 (835)
-++|+.-.+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 887777666555544
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.70 E-value=0.54 Score=43.28 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----C--CCCCH
Q 043955 559 FAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----Q--IEPTA 631 (835)
Q Consensus 559 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~--~~p~~ 631 (835)
..|....-..|..+....|+..||...|++... |+-. +....-.+..+...-|+..+|...+++. | -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 455555555666677777777777777765432 4333 4555555566666667777777776665 1 12443
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
. -.+...+...|..+.|+.+++.++.-.|. +..-...+.+++++|+.+++..-..
T Consensus 163 ~--Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 163 H--LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred h--HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 2 23445677788888888888888888875 4555667788888998888765433
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.67 E-value=3.2 Score=46.18 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=20.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhcC
Q 043955 90 DSTDFIVNSLVAMYAKCYDFRKARQLFDRMG 120 (835)
Q Consensus 90 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 120 (835)
.|.+..|..|.....+.-.++.|...|-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4666777777666666666677777766553
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.65 E-value=3.3 Score=42.96 Aligned_cols=215 Identities=16% Similarity=0.111 Sum_probs=128.7
Q ss_pred HhcCChhhHHHHHHhcCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHhhc-CCcCChhh--hHhHHHHhhc---ccc
Q 043955 407 GKCGNIDYSRNVFESIESK---DVVSWTSMISSYVHNGLANEALELFYLMNEA-NVESDSIT--LVSALSAASS---LSI 477 (835)
Q Consensus 407 ~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~-g~~p~~~t--~~~ll~a~~~---~~~ 477 (835)
.+.|..+.|+..-+..-.. =.-.|.+.+...++.|+++.|+++.+.-+.. -+.+|..- -..+|.+-+. ..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3456666666555544332 2235667777778888888888887776552 23444322 2233333221 123
Q ss_pred hhhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChhhHHHHhhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 478 LKKGKELNGFIIRKGFNLEGSVA-SSLVDMYARCGALDIANKVFNCVQT--KDLILWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
...++..-.+..| +.||..-. -.-...|.+.|++.++-.+++.+-+ |.+..|. .|....-++.++.-+++.
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHHH
Confidence 3444444433333 33432211 1224567788999999988888764 4444443 233333334444444444
Q ss_pred HH-CCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC---CCC
Q 043955 555 EA-ESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRA-NHLEEAYQFVRSM---QIE 628 (835)
Q Consensus 555 ~~-~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~m---~~~ 628 (835)
.. ..++||. .....+..+-...|.+..|+.--+... ...|....|..|.|+-.-. |+-.++...+-+. |-+
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 32 2378876 466677778888899888887666554 6789999999999987654 9999999888776 555
Q ss_pred CC
Q 043955 629 PT 630 (835)
Q Consensus 629 p~ 630 (835)
|+
T Consensus 396 Pa 397 (531)
T COG3898 396 PA 397 (531)
T ss_pred Cc
Confidence 53
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.57 E-value=0.13 Score=47.15 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=70.5
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP--WPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a 650 (835)
....|..+.+...+..+..-|.-.+ +... ...+....+.++++- ..++..++..+...|+.+.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456677777777776665553222 1111 223333333343331 12456677778899999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 651 EIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
...+++++.++|-+...|..|..+|...|+..+|.++...++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876654
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.13 Score=53.43 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEE
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIH 712 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~ 712 (835)
++..|...+.+.++...|.....++++++|+|.-+...-+.+|+..|.+++|....+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k------------------- 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK------------------- 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-------------------
Confidence 4556666677889999999999999999999999999999999999999999999887775
Q ss_pred EEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 713 SFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 713 ~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
..|..+.|...|..|..++
T Consensus 320 -------~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 320 -------LEPSNKAARAELIKLKQKI 338 (397)
T ss_pred -------hCCCcHHHHHHHHHHHHHH
Confidence 3467788999999888887
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=95.45 E-value=0.17 Score=54.05 Aligned_cols=112 Identities=9% Similarity=0.092 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc
Q 043955 579 INEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGR---------ANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN 646 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r---------~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~ 646 (835)
.+.|..+|......-.++|+ ...|.++...+.. .....+|.++.++. .+.| |+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 56788889888766688886 6777766654321 23455677777766 5666 66666666666677788
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
.+.|...++++++++|+.+..|...+.+..-+|+.++|.+..+.
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887665
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=6.4 Score=44.47 Aligned_cols=335 Identities=12% Similarity=0.015 Sum_probs=176.2
Q ss_pred HCCCCCChhhHHHH-----HHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC---hhHHHHHHhcCCC-
Q 043955 153 RVGLVTNAYTFVAA-----LQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGK---MTEAAGVLYQLEN- 223 (835)
Q Consensus 153 ~~g~~p~~~t~~~l-----l~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~- 223 (835)
.-|+..+..-|..+ ++-+...+.+..|.++-..+-..-... ..++.....-+.+..+ .+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 44666665555443 444555566666666655543222222 4566666666666532 3334444444444
Q ss_pred -CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccc
Q 043955 224 -KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAG----QKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQI 298 (835)
Q Consensus 224 -~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 298 (835)
...++|..+.+---+.|+++-|..+++.=...+ +-.+-.-+...+.-+...|+.+...++.-++...-...+
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~--- 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSS--- 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---
Confidence 466788888887888888888888775422221 111223455666677777777777776666554311100
Q ss_pred cchhhhhhhccCChhHHHHHHHhcCC-CCcccHHHHHHHHHhcCChHHHHHHHHHH------HHcCCCCChhHHHHHHHH
Q 043955 299 GNTLMDMYAKCCCVNYMGRVFYQMTA-QDFISWTTIIAGYAQNNCHLKALELFRTV------QLEGLDADVMIIGSVLMA 371 (835)
Q Consensus 299 ~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g~~p~~~t~~~ll~a 371 (835)
+. ....+...|..++.+... .|-. .+- .+-+.++-.+++.-|..= ...|..|+. ...-.+
T Consensus 581 l~------~~l~~~p~a~~lY~~~~r~~~~~---~l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 581 LF------MTLRNQPLALSLYRQFMRHQDRA---TLY-DFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred HH------HHHHhchhhhHHHHHHHHhhchh---hhh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 00 001112223333322211 1110 011 111222222222222110 011223332 233334
Q ss_pred hccccCchHHHHHH---HHHHH--------hCCC-chhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHh
Q 043955 372 CSGLKCMSQTKEIH---GYIIR--------KGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVH 439 (835)
Q Consensus 372 ~~~~~~~~~~~~i~---~~~~~--------~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 439 (835)
|++......+.+.. ..+++ .|.. .....+-.+.-+..-|+...|.++=.+..-||-..|---+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 44443322111111 11111 1111 112333444455677888899998888888888888888888999
Q ss_pred CCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHH
Q 043955 440 NGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKV 519 (835)
Q Consensus 440 ~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 519 (835)
.+++++-.++-+.+. .+.-|.-++.+|.+.++.++|+.+...+... .-.+.+|.++|++.+|.++
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 888887776655443 2567777888899888888888776544211 1577888888888887765
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.31 E-value=0.16 Score=54.12 Aligned_cols=63 Identities=11% Similarity=-0.065 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI----TFLALLYACSHSGLINEGKKFLEIMRC 591 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (835)
+...|+.+..+|.+.|++++|+..|++.++ +.||.. +|..+..++.+.|+.++|...++...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556777777777777777777777777776 566643 477777777777777777777776554
No 220
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.17 Score=50.67 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh---cccCcHHHHHHHHHHhhhcCCCCC-ChhH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYAC---SHSGLINEGKKFLEIMRCDYQLDP-WPEH 601 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~i~p-~~~~ 601 (835)
|...|-.|...|...|++..|+.-|.+..+ +.||. ..+..+..++ +......+|..+|+.+. ..+| ++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al---~~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL---ALDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH---hcCCccHHH
Confidence 677888888888888888888888888777 44444 2333333333 22233556777777666 5566 4666
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALL 638 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll 638 (835)
..-+.-.+...|++.+|...++.| ..-|....|..++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 666666666777777777777666 3334334455554
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=1.4 Score=43.05 Aligned_cols=182 Identities=13% Similarity=-0.008 Sum_probs=116.1
Q ss_pred HHHHHHHHH-hCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--CCh--------hHHHHHHHHHHhcCChHHHHHH
Q 043955 482 KELNGFIIR-KGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--KDL--------ILWTSMINANGLHGRGKVAIDL 550 (835)
Q Consensus 482 ~~i~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~Al~l 550 (835)
+.+|..+.+ .|.+ +++|+..|.-..-+++-...|+.-.. ..+ ..-+.|+..+.-+|.+.-.+.+
T Consensus 125 R~lhAe~~~~lgnp-----qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 125 RILHAELQQYLGNP-----QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH
Confidence 456666554 2332 56677766665555555555554332 122 3346677777778888889999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcC----CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 043955 551 FYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDY----QLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQ 626 (835)
Q Consensus 551 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 626 (835)
+++.++..-+-+.+....+.+.-.+.|+++.|..+|+...+.- +++-..-..-.+..++.-+.++-+|..++.+.+
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 9999985444455666777777889999999999999766442 333333333445556666778888888887774
Q ss_pred C-CCCHHHHHHHHHHHh-hcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 627 I-EPTAEVWCALLGACR-VHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 627 ~-~p~~~~~~~ll~a~~-~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
. +|...++..-=..|. -.|+...|.+..+.+.+..|...-.-
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 3 343233322222233 34788888888888888888755444
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.19 E-value=3.4 Score=40.37 Aligned_cols=162 Identities=22% Similarity=0.134 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-ChhHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQT--K-DLILWTSMIN-ANGLHGRGKVAIDLFYKMEAESFAP----DHITFLA 568 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~-~~~~~g~~~~Al~l~~~m~~~g~~P----d~~t~~~ 568 (835)
...+..+...+...+....+.+.+..... + +...+..... .+...|+.++|...|++... ..| ....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 172 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHH
Confidence 34445555666666777777777776654 2 2233333444 68889999999999999865 444 2233444
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVH 644 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~ 644 (835)
....+...+..+++...+..... ..|. ...+..+...+...|.+++|...+... ...|+ ...+..+...+...
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 44446778899999999988773 3343 677888888999999999999998887 44555 45666666666666
Q ss_pred CchhHHHHHHHHHHhcCCC
Q 043955 645 SNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~ 663 (835)
++.+.+....++.++..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7799999999999999997
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.16 E-value=0.034 Score=44.48 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM-----QIE---PT-AEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m-----~~~---p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
.|..+..+|.+.|++++|++.+++. ... |+ +.++..+...+...|+.+.|+..++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444455555555544444433 011 11 22344444555555555555555555544
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=9.6 Score=43.73 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=16.0
Q ss_pred HHHhCCChhHHHHHHhcCCCC
Q 043955 204 MYARCGKMTEAAGVLYQLENK 224 (835)
Q Consensus 204 ~y~~~g~~~~A~~~f~~~~~~ 224 (835)
.+-..|++++|.+.+..+|-+
T Consensus 499 lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 499 LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHhcCHHHHHHHHhcCCHH
Confidence 344568899999999988854
No 225
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.72 E-value=5.2 Score=40.10 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=19.9
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
.+.|.+..|..-|+.+.++|.-.| ..+....|++.|...|..++|.+
T Consensus 186 ~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 186 TKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 334444444444444444443333 23344444444444444444443
No 226
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.70 E-value=0.15 Score=55.66 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=86.4
Q ss_pred HhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHH
Q 043955 539 GLHGRGKVAIDLFY-KMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 539 ~~~g~~~~Al~l~~-~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~e 617 (835)
...|+.++++++.. .-.-..++ ..-...++.-+...|..+.|+++-..-.. -.++....|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 35677777666654 11111122 22245566667788888888887543222 2577788999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 618 AYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 618 A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
|.+..++. ++...|..|......+||++.|+.+++++ ..+..|+-+|...|+-+.-.++-+....+|
T Consensus 337 A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988765 37789999999999999999999999865 347789999999999887777766666554
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.47 E-value=8 Score=41.15 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=56.4
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 618 AYQFVRSMQIEP----TAEVWCALLGA--CRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 618 A~~~~~~m~~~p----~~~~~~~ll~a--~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
-+.++++.++.| +..+-|.|..| ...||+...+..-..-+.+..| .+.+|.+++-......+++||-....
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345666665555 23356667666 5688999999999999999999 88999999999999999999988875
No 228
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.32 E-value=2 Score=50.91 Aligned_cols=157 Identities=22% Similarity=0.200 Sum_probs=97.2
Q ss_pred CChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHH
Q 043955 410 GNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFII 489 (835)
Q Consensus 410 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 489 (835)
+++++|..-+.++. ...|.-.+.--.++|.+.+|+.+ .+|+..++.-+..+++.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHH------------HH
Confidence 34555555544443 22334444444556666666665 367777776666666531 22
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 043955 490 RKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT--FL 567 (835)
Q Consensus 490 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t--~~ 567 (835)
+.+ .++--.-||.+||++++|.+. |-..|++++|+.+-.+|.. .-|.+. -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 211 122334579999999999875 4567899999999888742 223322 24
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.|.+-|..+|..-||-++...-. -+| .--+.+|+++-.+++|.......
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~----sd~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYL----SDP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHh----cCH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 56667778888777777765433 223 34577888888999998877655
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.15 E-value=9.3 Score=40.68 Aligned_cols=112 Identities=7% Similarity=0.040 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHH--HhCCChhHHHHHHHHHHHC--CCCC------------C
Q 043955 96 VNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAY--SASGQCLEALGLFREMQRV--GLVT------------N 159 (835)
Q Consensus 96 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p------------~ 159 (835)
.+.++++|.- .+++............-....|-.+..+. -+.+.+.+|++.+...... +-.| |
T Consensus 49 ~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 49 GGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred hhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 4556666654 23444333333331111133454444443 3567777777777666543 2221 2
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhC
Q 043955 160 AYTFVAALQACEDSSFETLGMEIHAATVKSG----QNLQVYVANALIAMYARC 208 (835)
Q Consensus 160 ~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g----~~~~~~~~~~li~~y~~~ 208 (835)
-+-=......+...|.+.+|+.++..++..= ..-+...|+.++-++++.
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 2222334455667778888877777766543 335677777777776653
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.12 E-value=0.43 Score=42.01 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHS 576 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 576 (835)
..++.+++-++++.|+++....+.+..=.-|+ .+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 34556666677777777666666654322111 11111111 112234679999999999999999
Q ss_pred CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 043955 577 GLINEGKKFLEIMRCDYQLDPWPEHYACLVDL 608 (835)
Q Consensus 577 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 608 (835)
|++..|.++.+...+.|+|+-....|..|..-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999977788888777653
No 231
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.07 E-value=0.11 Score=33.34 Aligned_cols=33 Identities=39% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.+|..+...+...|+.+.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999999975
No 232
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.97 E-value=0.09 Score=33.92 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.+|..+..++...|+.+.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888999999999999999999999974
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.94 E-value=1.4 Score=39.85 Aligned_cols=125 Identities=13% Similarity=0.198 Sum_probs=71.2
Q ss_pred HhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChH
Q 043955 466 VSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGK 545 (835)
Q Consensus 466 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 545 (835)
..++..+...+.......+++.+++.+ ..++.+.|.|+.+|++.. ..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--------------------------------~~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--------------------------------PQ 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--------------------------------HH
Confidence 344555555555555555555555554 244555555555555432 22
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHh
Q 043955 546 VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRA-NHLEEAYQFVRS 624 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~ 624 (835)
+.++.++. .++......++..|...+.++++..++..+.. |...++++... ++.+.|.+++.+
T Consensus 58 ~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 58 KEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 33333331 23344455577778888888888887765531 22344444444 788888888876
Q ss_pred CCCCCCHHHHHHHHHHHh
Q 043955 625 MQIEPTAEVWCALLGACR 642 (835)
Q Consensus 625 m~~~p~~~~~~~ll~a~~ 642 (835)
- .++..|..++..|.
T Consensus 122 ~---~~~~lw~~~~~~~l 136 (140)
T smart00299 122 Q---NNPELWAEVLKALL 136 (140)
T ss_pred C---CCHHHHHHHHHHHH
Confidence 2 35667887777664
No 234
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.94 E-value=3.4 Score=40.21 Aligned_cols=140 Identities=16% Similarity=0.060 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh-hHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP-EHYACL 605 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~y~~l 605 (835)
+-.....+.+.|++.+|++.|+++... -|+. .....+..++...|++++|...|+...+.|.-.|.. ..+-.+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 334455566778888888888887764 2321 234566677777788888888887777666555542 222222
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc-----------------h
Q 043955 606 VDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN-----------------Y 668 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----------------~ 668 (835)
+..+... ... .+ +. -+..+....|...++.+++.-|+++-. -
T Consensus 86 g~~~~~~--~~~---~~---~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 86 GLSYYKQ--IPG---IL---RS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHH--HHH---HH----T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--Ccc---ch---hc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 000 00 01 122233445555555555555554322 2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 669 VLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 669 ~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...+..|.+.|+|..|..-.+.+-+
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3457789999999998877665554
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.92 E-value=0.15 Score=40.67 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
...+..|+.++.+.|++++|++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677778888888888888877765
No 236
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.90 E-value=1.8 Score=37.53 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=80.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA 618 (835)
.-.|..++..++..+...+ .+..-++-++.--..+-+-+--.+.++++-+-|.+.|-. ..-.+|..+.+.|...|=
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHHH
Confidence 3457778888888887653 122223333322222223344455666665555555521 122345555555544432
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 619 YQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 619 ~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
..--|++...+|.-|.-..++..+++-+..+|...+-+++.|.+.|...++.++++..-++|++
T Consensus 89 ---------------vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 ---------------VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2234566677888899999999998877778889999999999999999999999999999974
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.87 E-value=0.39 Score=43.90 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhh----hcCCCCCChhH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMR----CDYQLDPWPEH 601 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~i~p~~~~ 601 (835)
...++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+. +++|+.|+.++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455556666666677777666666 344 34456666667777777777766666543 34577776543
No 238
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.84 E-value=1.2 Score=40.44 Aligned_cols=93 Identities=20% Similarity=0.179 Sum_probs=70.8
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcC
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHS 645 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~ 645 (835)
.+++.-.+.+..+++..++..+. -+.|. .++-.+-+.++.+.|++++|..++++. .-.|....-.+|+..|....
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444456778888888888887 67784 666667777888999999999999988 33455556678888888777
Q ss_pred chhHHHHHHHHHHhcCCC
Q 043955 646 NKELGEIVAKKLLELDPG 663 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~p~ 663 (835)
.-..=...++.+++..|+
T Consensus 92 ~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGAD 109 (160)
T ss_pred CChHHHHHHHHHHhcCCC
Confidence 767777888888888774
No 239
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.68 E-value=13 Score=43.02 Aligned_cols=103 Identities=18% Similarity=0.294 Sum_probs=51.0
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCcHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFA-PDHITFLALLYACSHSGLINEGK 583 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-Pd~~t~~~ll~a~~~~g~~~~a~ 583 (835)
......|++++|..+|+- .|+++.+++++.+.+.+-+. |+. .....-...+....|.
T Consensus 422 ~~~e~~g~~~dAi~Ly~L------------------a~~~d~vl~lln~~Ls~~l~~~~~----~~~~~s~~~~l~~la~ 479 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHL------------------AEEYDKVLSLLNRLLSQVLSQPSS----SSLSDSERERLIELAK 479 (613)
T ss_dssp HHHHHCT-HHHHHHHHHH------------------TT-HHHHHHHHHHHHHHHHHCSST----SSSSSTTTTSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH------------------HhhHHHHHHHHHHHHHHHHcCccc----cccccchhhhHHHHHH
Confidence 334566777777777654 34666677766665542100 000 0000001223344555
Q ss_pred HHHHHhhhcC----CCCC-ChhHHHHHHHH-----HhhcCCHHHHHHHHHhCCCCC
Q 043955 584 KFLEIMRCDY----QLDP-WPEHYACLVDL-----LGRANHLEEAYQFVRSMQIEP 629 (835)
Q Consensus 584 ~~~~~m~~~~----~i~p-~~~~y~~lv~~-----l~r~g~~~eA~~~~~~m~~~p 629 (835)
++.+.....- .+.+ ..+++..|.++ +.++|++++|++.+++.++-|
T Consensus 480 ~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 480 EILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 5554433211 1233 24555555544 467999999999999998888
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=17 Score=41.89 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHH----HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 043955 97 NSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIIS----AYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACED 172 (835)
Q Consensus 97 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~----~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 172 (835)
..-+++..+...++.|..+-..-.. |...-..+.. -+-+.|++++|...|-+-... +.| +.+++-+-.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 3445666666677777777665543 2222223333 344679999998888776532 333 234455544
Q ss_pred CCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCC
Q 043955 173 SSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLE 222 (835)
Q Consensus 173 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 222 (835)
......--..++.+.+.|+.... .-+.|+..|.+.++.+.-.++.+..+
T Consensus 410 aq~IknLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 44555555667777788876433 34789999999999888887777665
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.59 E-value=3.8 Score=44.19 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=53.8
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHH--HHHHHHHHHhhc
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQ-I-EPTAE--VWCALLGACRVH 644 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~--~~~~ll~a~~~~ 644 (835)
+..++.+.|..+||.+.|..|.+++...-.......++..|...+++.|+..++.+-. + .|.+. .|.+.|-..|.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3334445566666666666555443222223344456666666666777766666652 1 23333 344433333333
Q ss_pred Cch---------------hHHHHHHHHHHhcCCCCCCch
Q 043955 645 SNK---------------ELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 645 ~~~---------------~~a~~~~~~~~~l~p~~~~~~ 668 (835)
++. ..|.++..++.+.+|.-+.+.
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 321 235578889999999876553
No 242
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.30 E-value=3.2 Score=40.38 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=98.5
Q ss_pred HHHHHHhcCChhhHHHHhhhCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhc
Q 043955 503 LVDMYARCGALDIANKVFNCVQT--K----DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACS 574 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~ 574 (835)
....+...|++++|.+.|+.+.. | -..+.-.++.++-+.|++++|+..|++.++ .-|++ +-+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHH
Confidence 34456688999999999998874 2 223566788899999999999999999988 45654 23333333332
Q ss_pred ccCcH-------------HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH--HHH
Q 043955 575 HSGLI-------------NEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCA--LLG 639 (835)
Q Consensus 575 ~~g~~-------------~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~--ll~ 639 (835)
+-... .+|...|+ .++.-+-.+....+|...+..+. +...-.. ...
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~----------------~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFE----------------ELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHH----------------HHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHH----------------HHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 22211 22333333 34444444555555555444331 0001111 223
Q ss_pred HHhhcCchhHHHHHHHHHHhcCCCCCC---chHHHHHHHHhcCCchHHHHH
Q 043955 640 ACRVHSNKELGEIVAKKLLELDPGNPG---NYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~ 687 (835)
-+...|+..-|..-++.+++--|+.+. +...|...|...|.-+.+...
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~~ 200 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADTR 200 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHHH
Confidence 466778889999999999999997543 457788889999988854443
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.27 E-value=0.69 Score=45.48 Aligned_cols=101 Identities=19% Similarity=0.119 Sum_probs=80.6
Q ss_pred hHHHHhhhCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc---------
Q 043955 515 IANKVFNCVQ--TKDLILWTSMINANGLH-----GRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGL--------- 578 (835)
Q Consensus 515 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~--------- 578 (835)
-.+..|.... ++|-.+|-+++..+..+ ++.+=-...++.|.+-|+.-|-.+|..||..+-+...
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677777 67889999999988765 4566666778889999999999999999987655432
Q ss_pred -------HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHH
Q 043955 579 -------INEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLE 616 (835)
Q Consensus 579 -------~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~ 616 (835)
-+=|+.+++.|. .+|+.||-+.-..+++++||.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 234778899997 6699999999999999999998643
No 244
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.20 E-value=0.37 Score=49.80 Aligned_cols=127 Identities=11% Similarity=0.046 Sum_probs=88.4
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHH---hhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCC---CHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEI---MRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-----QIEP---TAE 632 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~~~p---~~~ 632 (835)
.|..|...+.-.|+++.|+...+. +.++||-.. ....|+.+.+.+.-.|+++.|.+.++.. .+.- .+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 355566666677889999887652 345566554 3567888899999999999999888764 1111 233
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHh----cCC--CCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLE----LDP--GNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~----l~p--~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
..-+|.+++....+++.|+....+=+. |+. ....++-.|+|.|.+.|.-+.|....++-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455777788888888888877666443 322 23456888999999999999987765443
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.19 E-value=4.5 Score=45.02 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHH-Hhcc---cCcHHHHHHHHHHhhhcCCCCCCh
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAES-FAPDH-----ITFLALLY-ACSH---SGLINEGKKFLEIMRCDYQLDPWP 599 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd~-----~t~~~ll~-a~~~---~g~~~~a~~~~~~m~~~~~i~p~~ 599 (835)
....+++..+-+|+-+.+++++.+..+.+ ++-.- .+|..++. .|.. ...++++.++++.+.+.| |+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 34455666666777777777777655421 21111 12333333 3333 456777888888877554 653
Q ss_pred hHH-HHHHHHHhhcCCHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch-HHH
Q 043955 600 EHY-ACLVDLLGRANHLEEAYQFVRSMQ-----IEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY-VLI 671 (835)
Q Consensus 600 ~~y-~~lv~~l~r~g~~~eA~~~~~~m~-----~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~-~~l 671 (835)
.-| ---..++...|++++|.+.++++- .+. ....+--+...+....+.+.|...+.++.+.+....+.| ...
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 333 333456667788888888888651 111 122333455666677888999999999888777655554 566
Q ss_pred HHHHHhcCCc-------hHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHH
Q 043955 672 SNVFAASRKW-------KDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSHSESDEIYKKLAEITEK 737 (835)
Q Consensus 672 ~~~y~~~g~~-------~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~ 737 (835)
+-+|...|+- ++|.+..+....... + .+| ++-|.-..+..+.++...+
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~-------------k----~~g-k~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLKQ-------------K----KAG-KSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHHh-------------h----hcc-CCCChHHHHHHHHHHHHhc
Confidence 7778888888 444444433222111 1 123 5667777777777766544
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.13 E-value=4.1 Score=36.76 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=37.0
Q ss_pred cCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 043955 376 KCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLM 453 (835)
Q Consensus 376 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m 453 (835)
+........+..+++.+..+..+.|.++..|++... ++....+.. ..+.......+..|.+.+.++++..++.++
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 333444444444444443333466777777766532 223333331 233344444556666666666666666554
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.80 E-value=0.54 Score=40.49 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=41.5
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CC-CHHHHHHH---HHHHhhc
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI-EP-TAEVWCAL---LGACRVH 644 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p-~~~~~~~l---l~a~~~~ 644 (835)
+.+..|+++.|++.|.... .+-| +...|+.-...+.-+|+.++|++-+++. .+ .| ......+. ...+|..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3445555555555555443 3444 3555555555555555555555555444 11 11 11111121 2335566
Q ss_pred CchhHHHHHHHHHHhcC
Q 043955 645 SNKELGEIVAKKLLELD 661 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~ 661 (835)
||.|.|+.-++.+-++.
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66666655555544443
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.70 E-value=13 Score=38.09 Aligned_cols=19 Identities=5% Similarity=-0.298 Sum_probs=12.4
Q ss_pred HHHhhcCchhHHHHHHHHH
Q 043955 639 GACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~ 657 (835)
..+...+|++.|...++-.
T Consensus 254 ~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhhcCHHHHHHHHHHH
Confidence 3455667777777777644
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.65 Score=48.47 Aligned_cols=137 Identities=16% Similarity=0.061 Sum_probs=94.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCC
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANH 614 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~ 614 (835)
.+.|.+.|++..|...|++.... |. +...-..++...... .....+..+.-.+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 46777888888888888887651 11 011111122222211 112345567777888899
Q ss_pred HHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHH-HHHHHHH
Q 043955 615 LEEAYQFVRSM-QIEPTA-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDV-EQVRMRM 691 (835)
Q Consensus 615 ~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 691 (835)
+.+|++..+.. .++|+. -..--=..||...|+++.|+..++++++++|+|-.+-..|+.+-.+..+..+. .++++.|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 566644 35555567888899999999999999999999988888888887777766665 5666666
Q ss_pred Hc
Q 043955 692 RG 693 (835)
Q Consensus 692 ~~ 693 (835)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 44
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.58 E-value=1.2 Score=39.66 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHhcCCCC
Q 043955 647 KELGEIVAKKLLELDPGN 664 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~ 664 (835)
+..|...++++++.-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 556666777777777764
No 251
>PRK15331 chaperone protein SicA; Provisional
Probab=92.50 E-value=1.3 Score=40.55 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=62.9
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHh
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPTAEVWCALLGACR 642 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~a~~ 642 (835)
....-+.+.|++++|..+|.-+. -.+| +.+-+-.|.-++-..|++++|.+++..+ +-.|.+.. .....+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~---~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f--~agqC~l 116 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLC---IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF--FTGQCQL 116 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH---HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc--hHHHHHH
Confidence 44445668899999999998776 3456 4555666777778888999999888765 33344432 2334455
Q ss_pred hcCchhHHHHHHHHHHhcCCC
Q 043955 643 VHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~ 663 (835)
..|+.+.|+..++.+++ .|.
T Consensus 117 ~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 117 LMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HhCCHHHHHHHHHHHHh-Ccc
Confidence 67899999999888887 344
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=2.6 Score=42.30 Aligned_cols=116 Identities=11% Similarity=0.068 Sum_probs=80.8
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH---HHHhhcCch
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALL---GACRVHSNK 647 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll---~a~~~~~~~ 647 (835)
.....|+..++...|..... ..| +.+.-..|..+|..+|+.++|..++..+|.+-...-|..|- .....-.+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34567888888888877663 345 35667778888999999999999999998766554444421 112222222
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 648 ELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 648 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
.. ....++-+.-+|+|...-..|+..|...|+.++|.+..-.+
T Consensus 220 ~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 220 PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21 12345566789999999999999999999999998764433
No 253
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.34 E-value=0.75 Score=47.64 Aligned_cols=254 Identities=13% Similarity=0.040 Sum_probs=142.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC---CChhHHHHHHHHhccccCchHHHHHHHHHHH--hCCC----chhHHHHHHHHH
Q 043955 336 GYAQNNCHLKALELFRTVQLEGLD---ADVMIIGSVLMACSGLKCMSQTKEIHGYIIR--KGLS----DLVILNAIVDVY 406 (835)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~--~~~~----~~~~~~~li~~y 406 (835)
-+++.|+....+.+|+..++.|.. .=+..|+.+-.++.-.+++++|.+.|.+-+. .-+. .......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 356777778888888877776632 2233455556667777788888887754332 1111 111233334444
Q ss_pred HhcCChhhHHHHHHhcC-------CC--CchhHHHHHHHHHhCCC--------------------hHHHHHHHHHHhh--
Q 043955 407 GKCGNIDYSRNVFESIE-------SK--DVVSWTSMISSYVHNGL--------------------ANEALELFYLMNE-- 455 (835)
Q Consensus 407 ~k~g~~~~A~~~f~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~Al~lf~~m~~-- 455 (835)
--.|.+++|.-.-.+-. ++ ....+-.+...|...|+ .+.|.+.|.+=++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555543221110 10 11122223344433332 2234444443221
Q ss_pred --cCCc-CChhhhHhHHHHhhcccchhhHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCChhhHHHHhhhCC---
Q 043955 456 --ANVE-SDSITLVSALSAASSLSILKKGKELNGFIIR----KGFN-LEGSVASSLVDMYARCGALDIANKVFNCVQ--- 524 (835)
Q Consensus 456 --~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--- 524 (835)
.|-. .-...|..+-..+.-+|+++.+...|..-.. .|-. .....++.|.+.|.-.|+++.|.+.|....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 0112344444445557889999888876443 2221 224456678888889999999999887532
Q ss_pred ----CCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 043955 525 ----TKDL--ILWTSMINANGLHGRGKVAIDLFYKMEAE----S-FAPDHITFLALLYACSHSGLINEGKKFLEIM 589 (835)
Q Consensus 525 ----~~~~--~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g-~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (835)
++.+ .+.-++...|--...+++|+..+.+=+.- + ..-....+.+|..|+...|..+.|+.+.+.-
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3433 35667788888888899999888774431 1 1122356788999999999999998877643
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.22 E-value=1.1 Score=44.38 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
.|+.-+.. .+.|++.+|...|..-++. -|+. -.+.-|..++...|+.++|..+|..+.++|+-.|. ++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35554443 3667788888888888874 2332 23445778888899999999999999888888885 688888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m 625 (835)
++..+++.|+-++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 888888888888888777766
No 255
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.01 E-value=23 Score=39.29 Aligned_cols=184 Identities=13% Similarity=0.105 Sum_probs=124.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQTK---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA 572 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a 572 (835)
+...|...++.-.+.|+.+...-.|++..-| =..-|--++.-....|+.+-|-.+..+..+--++-...+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456677777777888888888888877644 1234555554444458777777766665553333233332222223
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHHh
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAY---QFVRSM-QIEPTAEVWCALL-----GACR 642 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~---~~~~~m-~~~p~~~~~~~ll-----~a~~ 642 (835)
+-+.|+.+.|..+++....++ |+ ++.-.--+.+..|.|.++.+. +++... +.+-+..+...+. --..
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 678899999999999998775 65 444444567788999999988 666555 4444444443333 1245
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
+.++.+.|..+..++.+..|++..-|..+.++-...+.-.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 6688999999999999999999999999999877666333
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.83 E-value=1.4 Score=39.38 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=48.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 605 LVDLLGRANHLEEAYQFVRSM----QIEPTA-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m----~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
-.....+.|++++|.+.++.. |..|-+ -+--.|+.++...++.+.|...+++.++|.|.++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 344455678888888888777 555532 245567788999999999999999999999988754
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.64 E-value=15 Score=36.33 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD----HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 599 (835)
..|-.=+..-.+.|++++|.+.|+.+..+ .|. .-+...++.|.-+.++.++|...+++..+.|+-.|++
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 34444455555778888888888887764 232 2456666777777788888888877777777666664
No 258
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.38 E-value=0.84 Score=42.57 Aligned_cols=88 Identities=15% Similarity=0.082 Sum_probs=67.9
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-C-----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 606 VDLLGRANHLEEAYQFVRSM-QIEP-T-----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m-~~~p-~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
++-+...|.+++|..-+..+ .+-| . ++.|..-..+..+.+..+.|+....++++|.|.+..+.+.-+-+|...
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 35566778888888777665 2222 2 233444445556778899999999999999999888888889999999
Q ss_pred CCchHHHHHHHHHHc
Q 043955 679 RKWKDVEQVRMRMRG 693 (835)
Q Consensus 679 g~~~~a~~~~~~m~~ 693 (835)
.++++|.+-.+.+.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999988876
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.99 E-value=1.5 Score=43.53 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=74.3
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH-HHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPTA-EVWCALL 638 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~-~~~~~ll 638 (835)
.|..-+. ....|++.+|..-|....+.|.-.+ ....+--|+..+.+.|++++|...+..+ |--|-+ ...-=|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3467889999999999998885555 4677777999999999999998887766 443322 2333444
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
-.....|+.+.|...++++++-.|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 55567789999999999999999976543
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.99 E-value=1.4 Score=43.47 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=60.5
Q ss_pred HHHHHHhcC--CCCcchHHHHHHHHHhc-----CChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccC-----------
Q 043955 11 AEQLFDKVS--QRTVFTWNAMLGAYVSN-----GEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLK----------- 72 (835)
Q Consensus 11 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----------- 72 (835)
.+..|...+ ++|-.+|-+++..+... ++.+-....+..|.+.|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566666 56777777777766543 455555666777888888888888888877664432
Q ss_pred -----CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcC
Q 043955 73 -----DLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCY 107 (835)
Q Consensus 73 -----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 107 (835)
.-..+..++++|...|+.||-.+-..|++++++.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 22335555556666666666555555555555544
No 261
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.97 E-value=4 Score=47.18 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=37.3
Q ss_pred HHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH-hCCCCchhHHHHHHHHHHhc---
Q 043955 435 SSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR-KGFNLEGSVASSLVDMYARC--- 510 (835)
Q Consensus 435 ~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~k~--- 510 (835)
..+.-.|++|.|++.+-+ ..+...|.+.+...|.-+.-+...+... +.+.. ..-.+...-+..||..|.+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888888888776 3345667777766666554433222221 11111 11111113355677777653
Q ss_pred CChhhHHHHhhhCC
Q 043955 511 GALDIANKVFNCVQ 524 (835)
Q Consensus 511 g~~~~A~~~f~~~~ 524 (835)
.+..+|.++|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 45666666665443
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.57 E-value=5.8 Score=42.85 Aligned_cols=140 Identities=14% Similarity=0.079 Sum_probs=82.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHH---
Q 043955 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLE--- 616 (835)
Q Consensus 540 ~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~--- 616 (835)
+..+.+.-+++-++.++ +.||-.+-..+| |--.+.-+.|+.++|++..+.-. ..|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE------------~~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE------------ASLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH------------Hhhchhhhhhccc
Confidence 44556666667777776 678776544443 33445667888888876553200 0111111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC--CCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 617 EAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG--NPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 617 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
...+.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-+.+..|.+.|-..+++.|+..+..+-.+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111221123333444556777778888888888888888877764 4566777888888888888888887665443
No 263
>PRK12798 chemotaxis protein; Reviewed
Probab=90.43 E-value=27 Score=37.19 Aligned_cols=166 Identities=15% Similarity=0.232 Sum_probs=112.7
Q ss_pred cCChhhHHHHhhhCCC----CChhHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhcccCcHH
Q 043955 510 CGALDIANKVFNCVQT----KDLILWTSMINANGL-HGRGKVAIDLFYKMEAESFAPDHI----TFLALLYACSHSGLIN 580 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~-~g~~~~Al~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~ 580 (835)
.|+.++|.+.+..+.. +.+..+-+|+.+-.. ..+..+|+++|++..- .-|-.. ...--+.-+...|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5999999999988874 345677777777554 4589999999999887 566543 2333444567899999
Q ss_pred HHHHHHHHhhhcCCCCCChhHH-HHHHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHH
Q 043955 581 EGKKFLEIMRCDYQLDPWPEHY-ACLVDLLGRA---NHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKK 656 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p~~~~y-~~lv~~l~r~---g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 656 (835)
++..+-..-...|.-.|=...+ .-.+.++.+- -+.++-.+++..|+-+--..+|-.+...-.+.|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9887776666677777743333 3333343333 33444445555553222344777777778899999999999999
Q ss_pred HHhcCCCCCCchHHHHHHHHhc
Q 043955 657 LLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 657 ~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
++.+.+. ...-...+++|..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHH
Confidence 9999844 44555666677654
No 264
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.33 E-value=0.16 Score=46.28 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=61.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhH
Q 043955 165 AALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCK 244 (835)
Q Consensus 165 ~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 244 (835)
.+++.+.+.+........+..+.+.+...+..+.+.++..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777777777778888888777677788899999999999888888888874332 444566777777777777
Q ss_pred HHHHHHHH
Q 043955 245 AMQFFREL 252 (835)
Q Consensus 245 A~~l~~~m 252 (835)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77776654
No 265
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.56 E-value=7.2 Score=40.26 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcCCcCChhhhHhHHHHhhc--c----cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHH
Q 043955 444 NEALELFYLMNEANVESDSITLVSALSAASS--L----SILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIAN 517 (835)
Q Consensus 444 ~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~--~----~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 517 (835)
++.+.+++.|.+.|++-+..+|.+.+..... . .....++.++..|.+...-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 3456678888888888888777553333222 1 123344444444444321100
Q ss_pred HHhhhCCCCChhHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccc-Cc--HHHHHHHHHHh
Q 043955 518 KVFNCVQTKDLILWTSMINANGLHG----RGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHS-GL--INEGKKFLEIM 589 (835)
Q Consensus 518 ~~f~~~~~~~~~~~~~li~~~~~~g----~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~-g~--~~~a~~~~~~m 589 (835)
.++-..+.+|+.. ..+ -.+++...|+.+.+.|+..+. ..+.+-+-++... .. +....++++.+
T Consensus 138 -------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 138 -------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred -------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1222334444333 111 135677888888888887755 3454444443322 22 45778888888
Q ss_pred hhcCCCCCChhHHHHHHHHH
Q 043955 590 RCDYQLDPWPEHYACLVDLL 609 (835)
Q Consensus 590 ~~~~~i~p~~~~y~~lv~~l 609 (835)
.+. |+++...||..++-+-
T Consensus 209 ~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHc-CCccccccccHHHHHH
Confidence 876 9999988988766544
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.43 E-value=8.2 Score=42.37 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=55.7
Q ss_pred HHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhH
Q 043955 201 LIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNG 280 (835)
Q Consensus 201 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 280 (835)
-.+...++|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+... +..++--+...|+.+.-
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3455668889999988877765 556899999999999999999998887643 55555556666666666
Q ss_pred HHHHHHHHHhC
Q 043955 281 KELHAYAIKQG 291 (835)
Q Consensus 281 ~~i~~~~~~~g 291 (835)
..+-......|
T Consensus 393 ~kl~~~a~~~~ 403 (443)
T PF04053_consen 393 SKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 66555555444
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.69 E-value=1.2 Score=30.77 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI 564 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~ 564 (835)
.+|..+...|...|+.++|+++|++.++ ..||..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 3567777788888888888888888877 566654
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.68 E-value=36 Score=36.18 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=27.0
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
+++.+.+...++.+.++.|.....|..++..+.
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 377888999999999999988777777776654
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.52 E-value=3.2 Score=46.17 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=99.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh-----hHHHHHH-HHHh---hcCCHHHHH
Q 043955 549 DLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP-----EHYACLV-DLLG---RANHLEEAY 619 (835)
Q Consensus 549 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~lv-~~l~---r~g~~~eA~ 619 (835)
-+|+-+..- ++|. +..+++...=.|+-+.|++.+....+..++.-.. -.|..++ ..++ ..+.+++|.
T Consensus 178 G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 178 GLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 345555552 3443 3456666677899999999998776554554332 1233333 3334 366899999
Q ss_pred HHHHhC-CCCCCHHHHHHHHH-HHhhcCchhHHHHHHHHHHhcCCC----CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 620 QFVRSM-QIEPTAEVWCALLG-ACRVHSNKELGEIVAKKLLELDPG----NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 620 ~~~~~m-~~~p~~~~~~~ll~-a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++++.+ .--|+...|.-.-+ .++..||++.|...++++++..++ ..-.+.-+++.|...++|++|.+....+.+
T Consensus 254 ~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 254 ELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 999999 55689888876654 478899999999999988854332 233467789999999999999999887775
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.48 E-value=29 Score=36.00 Aligned_cols=18 Identities=0% Similarity=0.165 Sum_probs=13.5
Q ss_pred hHHHHHHHHhcCCchHHH
Q 043955 668 YVLISNVFAASRKWKDVE 685 (835)
Q Consensus 668 ~~~l~~~y~~~g~~~~a~ 685 (835)
+-.|+.||.+.|.-++-.
T Consensus 334 hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 334 HCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHHHHHHHHhccchhHHH
Confidence 567889998888777643
No 271
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.37 E-value=1.1 Score=45.21 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=74.6
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHS 645 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~ 645 (835)
-..-|.++|.++||+..|..-. .+.| ++..|..-..+|.|..++.-|+.-.+.+ .+... .-.|..-..|-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556778899999999887554 5677 7788888888888988888887665554 22211 124555556666678
Q ss_pred chhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH
Q 043955 646 NKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 683 (835)
+.+.|..-++.+++|+|++ .-|-.+|++.....|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E 213 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN----IELKKSLARINSLRE 213 (536)
T ss_pred hHHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHh
Confidence 8899999999999999984 334444544444333
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.18 E-value=0.72 Score=29.52 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666677777888888888888888888884
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.08 E-value=17 Score=34.84 Aligned_cols=180 Identities=13% Similarity=0.060 Sum_probs=106.3
Q ss_pred HHhcCChhhHHHHhhhCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHH
Q 043955 507 YARCGALDIANKVFNCVQ--TK-DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEG 582 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a 582 (835)
|-..|-..-|+--|.... .| -+..+|-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++...|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 334455555555555433 23 345678777778888999999999988887 55543 4555545566778888888
Q ss_pred HHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 583 KKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
.+-|...-+. +|+-.--+...-+-.+.-+..+|..-+.+--..-|..-|+..+-.+.- |.+.. +.+.+++.+-..
T Consensus 153 q~d~~~fYQ~---D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQD---DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKISE-ETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhc---CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhcc
Confidence 8766554433 342211111222223444666776544333234566677776654432 22111 223334433333
Q ss_pred CC-------CCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 663 GN-------PGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 663 ~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++ +.+|.-|+.-|-..|..++|..+.|....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33 34688899999999999999999986654
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.03 E-value=24 Score=34.56 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HH---HHHHHHH
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH---IT---FLALLYA 572 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~---~t---~~~ll~a 572 (835)
.++--..+|..||+.+.|-..+++.-+ ....-++++|+++|++...- +.-+. .. +..+-..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHhhhH
Confidence 345567789999999888777665321 22345677788888776542 11111 11 1222233
Q ss_pred hcccCcHHHHHHHHHHhhh---cCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHh
Q 043955 573 CSHSGLINEGKKFLEIMRC---DYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM---Q--IEP-TAEVWCALLGACR 642 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~---~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m---~--~~p-~~~~~~~ll~a~~ 642 (835)
+.+...++||-..|..-.. ...--|+ -..|...|-++.-+.++..|+..++.- | ..| |..+...||.++
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 4455666666555542210 0011122 233445555666677888899888873 3 233 344777888886
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
..||.|....+.. ++....|-|.|+
T Consensus 239 d~gD~E~~~kvl~---------sp~~r~MDneya 263 (308)
T KOG1585|consen 239 DEGDIEEIKKVLS---------SPTVRNMDNEYA 263 (308)
T ss_pred ccCCHHHHHHHHc---------ChHhhhhhHHHH
Confidence 4677777666553 444445555554
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.22 E-value=1.2 Score=28.41 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD 562 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd 562 (835)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677788888888888888888888877 5665
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.20 E-value=2.9 Score=42.23 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEA-----ESFAPDHITFLAL 569 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~-----~g~~Pd~~t~~~l 569 (835)
.++..++..|..||+.+.+.+.++++.+ -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4567889999999999999999988764 3778999999999999999999999998875 4566655544433
No 277
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.71 E-value=39 Score=34.28 Aligned_cols=54 Identities=2% Similarity=0.068 Sum_probs=38.6
Q ss_pred hccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCC
Q 043955 372 CSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESK 425 (835)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~ 425 (835)
....++...+..+++.+......+..+.-.|+..|...|+.+.|..+++.++..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 344566666666666666666666567777888888888888888888888753
No 278
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.61 E-value=49 Score=35.42 Aligned_cols=439 Identities=12% Similarity=0.096 Sum_probs=215.6
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043955 193 LQVYVANALIAMYARCGKMTEAAGVLYQLENKDS---VSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVS 269 (835)
Q Consensus 193 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 269 (835)
.|+..|-.||.-|...|..++-++++++|..|-+ ..|..-|++=....++.....+|.+.....+..| .+..-|.
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl~ 117 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYLE 117 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHHH
Confidence 3677888999999999999999999999988754 4688888888888888888888888877644433 3333333
Q ss_pred HHhccCChHhH------HHHHHHHHH-hCCCcc-ccccchhhhhhh---c------cCChhHHHHHHHhcCCCCcc----
Q 043955 270 ASGRLGNLLNG------KELHAYAIK-QGFVSD-LQIGNTLMDMYA---K------CCCVNYMGRVFYQMTAQDFI---- 328 (835)
Q Consensus 270 a~~~~~~~~~a------~~i~~~~~~-~g~~~~-~~~~~~Li~~y~---~------~g~~~~A~~~f~~m~~~~~~---- 328 (835)
-..+.+.+-.| -+.++.++. .++.|- ...|+..+...- . ..++|..++.+.++......
T Consensus 118 YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nlek 197 (660)
T COG5107 118 YIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEK 197 (660)
T ss_pred HHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHH
Confidence 33333322221 234444444 234432 334444433221 1 23455566666666543111
Q ss_pred cHH------HHHHHHHh---cC----ChHHHHHHHHHHHH--cCCCC----ChhHHHHHHH-Hhcc---------cc---
Q 043955 329 SWT------TIIAGYAQ---NN----CHLKALELFRTVQL--EGLDA----DVMIIGSVLM-ACSG---------LK--- 376 (835)
Q Consensus 329 ~~~------~li~~~~~---~g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~-a~~~---------~~--- 376 (835)
.|+ .=++.... -| -+-.|...+++... .|... +..|++.+-+ +.++ ..
T Consensus 198 lW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~ 277 (660)
T COG5107 198 LWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLK 277 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcc
Confidence 121 11111110 01 13445555555532 24322 2222222111 0000 00
Q ss_pred ---C--chHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHH-hCCChHHHHHHH
Q 043955 377 ---C--MSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYV-HNGLANEALELF 450 (835)
Q Consensus 377 ---~--~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~Al~lf 450 (835)
+ .+...-+|.+++..-+-...+|----..+...++-+.|......-.+ +..+.+..++-|- -..+.++....|
T Consensus 278 L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~-~spsL~~~lse~yel~nd~e~v~~~f 356 (660)
T COG5107 278 LGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE-MSPSLTMFLSEYYELVNDEEAVYGCF 356 (660)
T ss_pred cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc-CCCchheeHHHHHhhcccHHHHhhhH
Confidence 0 00111122222222221222333333333444555555554433221 1111222222222 233333333334
Q ss_pred HHHhhcCCcCChhhhHhHHHHhh---cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--
Q 043955 451 YLMNEANVESDSITLVSALSAAS---SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-- 525 (835)
Q Consensus 451 ~~m~~~g~~p~~~t~~~ll~a~~---~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-- 525 (835)
+...+. -..--+.+.+=+ .-++.+.-.++. .+. ...-.+++..+++.-.+..-++.|+.+|-+..+
T Consensus 357 dk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell---~kr-~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~ 427 (660)
T COG5107 357 DKCTQD-----LKRKYSMGESESASKVDNNFEYSKELL---LKR-INKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG 427 (660)
T ss_pred HHHHHH-----HHHHHhhhhhhhhccccCCccccHHHH---HHH-HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 333210 000000000000 011221111111 110 012245666777777777778888888876653
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhH
Q 043955 526 ---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL-ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEH 601 (835)
Q Consensus 526 ---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~ 601 (835)
+++..++++|.-+++ |+..-|..+|+--+. .-||...|. -.+.-+..-++-+.|+.+|+.......-.--...
T Consensus 428 ~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 428 IVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred CCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 467778888876654 666777888876555 356654433 3344455677888888888855432211112467
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCc
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSN 646 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~ 646 (835)
|.-|++--..-|.+..|..+=++| ..-|...+-..+++-+.+..+
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhcc
Confidence 888888888888888888777777 334444344444455544433
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.36 E-value=28 Score=32.31 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=52.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-C
Q 043955 551 FYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QI-E 628 (835)
Q Consensus 551 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~ 628 (835)
+.+++..++-||.......|-. +.+....+.++=-.|.+..+ .+|.-++++|-..|++-+|..++++. +. .
T Consensus 48 L~qllq~~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 48 LHQLLQYHVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHhhcccCCcHHHHHHHHH--hHccChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 4455566677777655544422 22233333333333332211 25677889999999999999999885 22 2
Q ss_pred CCHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 629 PTAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 629 p~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
+.+ .-+|.|-..++|...=-.++
T Consensus 121 ~~~---~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 121 VPA---RKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred CCH---HHHHHHHHHcCCHHHHHHHH
Confidence 222 34555555555544433333
No 280
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.31 E-value=3 Score=42.34 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=64.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhc
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRA 612 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~ 612 (835)
..-|.+.|.+++|+..|.+-+. +.| |.+++..-..||.+...+..|..-.+... .++-. ...|+--+.+=...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai---aLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI---ALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH---HhhHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999887 678 89999998899998888877776555443 11111 22333333332334
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHH
Q 043955 613 NHLEEAYQFVRSM-QIEPTAEVWCA 636 (835)
Q Consensus 613 g~~~eA~~~~~~m-~~~p~~~~~~~ 636 (835)
|.+.||.+-.+.. .++|+..-+.-
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHH
Confidence 5666666666655 67887554433
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.28 E-value=1.5 Score=28.71 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777778888888888888888754
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.28 E-value=7.1 Score=40.16 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=26.4
Q ss_pred HHhCCChHHHHHHHHHHhhc--CCcCChhhhHhHHHHhhcccchhhHHH
Q 043955 437 YVHNGLANEALELFYLMNEA--NVESDSITLVSALSAASSLSILKKGKE 483 (835)
Q Consensus 437 ~~~~g~~~~Al~lf~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~ 483 (835)
+.+..+.++|+..+.+-+.. ...---.++..+..+.+..|..+++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34667788888887776542 111122455555666666555554443
No 283
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.25 E-value=9.5 Score=43.01 Aligned_cols=180 Identities=17% Similarity=0.175 Sum_probs=107.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCcCCh----------hhhHhHHHHhhcccchhhHHHHHHHHHH-hC-CCCchh
Q 043955 431 TSMISSYVHNGLANEALELFYLMNEANVESDS----------ITLVSALSAASSLSILKKGKELNGFIIR-KG-FNLEGS 498 (835)
Q Consensus 431 ~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g-~~~~~~ 498 (835)
..|+-.|-...+++.-+++.+.++. -||. +.|.-.|.-=.+-|+-++|..+.--+++ .| +.|
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap--- 278 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP--- 278 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC---
Confidence 3455566666777777777777665 2322 2333334433445666666654444433 22 222
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhcc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI---TFLALLYACSH 575 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~---t~~~ll~a~~~ 575 (835)
|||+-||++=. .|- +-+.|-..+..+.|++.|++.-+ +.|+.. .+..||.|-.+
T Consensus 279 ------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 279 ------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred ------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 56778887422 211 12334555667788889998887 788864 45556554322
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAK 655 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~ 655 (835)
. ++...++ +. .--.+-.+++|.|.++.-.+.++- .+++++....+|...|..+++
T Consensus 336 ~--Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 336 H--FENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred h--ccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHH
Confidence 1 1111111 10 011255788999999887777653 356777777899999999999
Q ss_pred HHHhcCCCC
Q 043955 656 KLLELDPGN 664 (835)
Q Consensus 656 ~~~~l~p~~ 664 (835)
++++|.|..
T Consensus 391 ~mfKLk~P~ 399 (1226)
T KOG4279|consen 391 MMFKLKPPV 399 (1226)
T ss_pred HHhccCCce
Confidence 999999864
No 284
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.21 E-value=4.5 Score=41.08 Aligned_cols=159 Identities=13% Similarity=0.013 Sum_probs=108.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHH----HHHHHHhhcCCH
Q 043955 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYA----CLVDLLGRANHL 615 (835)
Q Consensus 540 ~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~----~lv~~l~r~g~~ 615 (835)
-+|+..+|-..++++++. .+.|-..+.-.=.+|...|..+.-+..++.+.... .|+...|+ .+.-.|...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999885 55566778888889999999999999888776432 34443333 334455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC----CCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 616 EEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG----NPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
++|++.-++. .+.| |.-.-.++.......++...|.+..++--..-.. -+-+|-..+-.|...+.++.|.++..
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 6666 4445556667778888888887776643222111 12234455556777789999999965
Q ss_pred HHHcCCCccCCc
Q 043955 690 RMRGSGLKKTPG 701 (835)
Q Consensus 690 ~m~~~~~~k~~g 701 (835)
.---+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 432233455554
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.19 E-value=10 Score=34.11 Aligned_cols=86 Identities=21% Similarity=0.163 Sum_probs=57.9
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCchhHHHH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEP-TAEVWCALLGACRVHSNKELGEI 652 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~ 652 (835)
..++.+++..+++.|. -+.|+ .+.-.+-+-++.+.|+++||..++++..-.+ ....-.+|+.-|..-..-..=..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 4777888888888877 66774 5555566677788889999999888884333 44455677777765544444555
Q ss_pred HHHHHHhcCCC
Q 043955 653 VAKKLLELDPG 663 (835)
Q Consensus 653 ~~~~~~~l~p~ 663 (835)
.++.+++-+++
T Consensus 99 ~A~~~le~~~~ 109 (153)
T TIGR02561 99 HADEVLARDAD 109 (153)
T ss_pred HHHHHHHhCCC
Confidence 66666655443
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.59 E-value=28 Score=32.29 Aligned_cols=135 Identities=7% Similarity=0.042 Sum_probs=79.3
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhC-CChhHHHHHHhcCC
Q 043955 145 LGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANA-LIAMYARC-GKMTEAAGVLYQLE 222 (835)
Q Consensus 145 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~-li~~y~~~-g~~~~A~~~f~~~~ 222 (835)
++.++.+.+.+++|+...+..+++.+.+.|...... .++..++-+|...... |++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 455566666777777777777777777777654433 3344444444433332 22221111 01223333333332
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhC
Q 043955 223 NKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQG 291 (835)
Q Consensus 223 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 291 (835)
..+..++..+...|++-+|+++.+.... .+...-..++.+..+.+|...--.++......+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3456777888899999999998877532 233344667778878887777777777766544
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.48 E-value=62 Score=39.22 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=85.1
Q ss_pred HHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 043955 503 LVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEG 582 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 582 (835)
.++.--|.|-+.+|..++..=.++-...|.+...-+...+++++|.-+|+..=+ .--.+.|+.+.|+|.++
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 333344556666666655433333334444445555555777777777765422 12346778889999999
Q ss_pred HHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH--------HHHHHHHHHHhhcCchhHHHHHH
Q 043955 583 KKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTA--------EVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~--------~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
..+-..+.. +-.--..+--.|+.-|..+|+.-||-++.....-.|.. ..|.--+..+..+++.+.-+.+.
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~iee~l 1062 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDIIEEVL 1062 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHHHHHH
Confidence 998876641 11111334467888888999999999988887545532 23555555666666555444443
Q ss_pred H
Q 043955 655 K 655 (835)
Q Consensus 655 ~ 655 (835)
.
T Consensus 1063 ~ 1063 (1265)
T KOG1920|consen 1063 K 1063 (1265)
T ss_pred h
Confidence 3
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.96 E-value=51 Score=34.09 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--cccCc----HHHHHHHHHHhhhcCCCCCC
Q 043955 544 GKVAIDLFYKMEAESFAPDHITFLALLYAC--SHSGL----INEGKKFLEIMRCDYQLDPW 598 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~--~~~g~----~~~a~~~~~~m~~~~~i~p~ 598 (835)
.++.+.+++.|.+.|++-+..++.+.+... .+... ...+..+|+.|+++|..--.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 456788999999999999988877643322 23333 55688899999988755433
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.63 E-value=84 Score=36.30 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHH
Q 043955 545 KVAIDLFYKMEAESFAP-----DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 545 ~~Al~l~~~m~~~g~~P-----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
+..+++|-+.-...+-| ........+.-|++.|.++|-.-++..|- +++.++--+--+-++.++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHH
Confidence 44556665554432222 11112233444555555555444444442 22333333333444555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCchhHH
Q 043955 620 QFVRSMQIEPTAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 620 ~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a 650 (835)
++.+. ..|...|..|++-+..+-.+-.+
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkPe~~~~ 709 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKPEFIKA 709 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCcHHHHH
Confidence 55554 46778899988888766554443
No 290
>PRK09687 putative lyase; Provisional
Probab=84.49 E-value=52 Score=33.78 Aligned_cols=75 Identities=9% Similarity=0.008 Sum_probs=46.8
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHh-hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043955 494 NLEGSVASSLVDMYARCGALDIANKVF-NCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA 572 (835)
Q Consensus 494 ~~~~~~~~~li~~y~k~g~~~~A~~~f-~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a 572 (835)
+++..+-..-+.++++.|+. .|...+ +.+..++ + .-..+.+++..|.. +|+..+.++.+. .||...-...+.+
T Consensus 203 D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~-~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-V-GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-h-HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 45666667777777777774 344444 3333333 2 34567778888875 688888888763 5566555555555
Q ss_pred hc
Q 043955 573 CS 574 (835)
Q Consensus 573 ~~ 574 (835)
|.
T Consensus 277 ~~ 278 (280)
T PRK09687 277 LK 278 (280)
T ss_pred Hh
Confidence 54
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.32 E-value=7.4 Score=36.74 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTKD------LILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
.+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566677777777777777777665432 22455556666666666666665555543
No 292
>PRK10941 hypothetical protein; Provisional
Probab=84.29 E-value=2.4 Score=42.88 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 634 WCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 634 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.++|-.++...++.+.|.++.++++.+.|+++.-+.--+-+|++.|.|..|..-.+..-+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 566668889999999999999999999999999999999999999999999887664433
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.78 E-value=14 Score=33.95 Aligned_cols=116 Identities=12% Similarity=0.009 Sum_probs=55.6
Q ss_pred ccCChhHHHHHHHhcCCCCcccHHHHH-----HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH---hccccCch
Q 043955 308 KCCCVNYMGRVFYQMTAQDFISWTTII-----AGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA---CSGLKCMS 379 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a---~~~~~~~~ 379 (835)
+.+..++|..-|..+...+--+|-.|. ...++.|+..+|...|.+.-.....|-..-=..-|++ +...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 345556666666666555444444432 3456677778888888777665444443311111111 23344444
Q ss_pred HHHHHHHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 043955 380 QTKEIHGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNVFESIE 423 (835)
Q Consensus 380 ~~~~i~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~ 423 (835)
......+-+...+-+- .....+|.-.-.|.|++.+|.+.|+.+-
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 4333333222222221 1234444444455555555555555544
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.72 E-value=1.6 Score=28.48 Aligned_cols=25 Identities=16% Similarity=-0.021 Sum_probs=11.6
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 634 WCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 634 ~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
|..|...|...|+.+.|+..+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555533
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.65 E-value=3 Score=39.59 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=52.7
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGE 651 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~ 651 (835)
..|++.-|+--|.... .|.|+ ++.|+-++--|..+|+++-|.+.++.. .+.|.-. +...-.-+..--|+.++|.
T Consensus 77 SlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 3456666666555443 66675 667777777777777777777777765 4455321 2111122233456777777
Q ss_pred HHHHHHHhcCCCCC
Q 043955 652 IVAKKLLELDPGNP 665 (835)
Q Consensus 652 ~~~~~~~~l~p~~~ 665 (835)
.-+.+..+-||+||
T Consensus 154 ~d~~~fYQ~D~~DP 167 (297)
T COG4785 154 DDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHHhcCCCCh
Confidence 77777777777664
No 296
>PRK09687 putative lyase; Provisional
Probab=83.37 E-value=58 Score=33.44 Aligned_cols=231 Identities=9% Similarity=-0.022 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCCh----HHHHHHHHHHhhcCCcCChhhhHhHHHHhh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLA----NEALELFYLMNEANVESDSITLVSALSAAS 473 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~ 473 (835)
+....+..+.+.|..+....+..-+..+|...-..-+.++.+.|.. ++++.++..+... .|+...-.+.+.+..
T Consensus 39 vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG 116 (280)
T PRK09687 39 KRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATG 116 (280)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHh
Confidence 3333444444444332222222222334444444445555555543 3566666655332 345444445555544
Q ss_pred cccchh--hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcC-ChHHHHHH
Q 043955 474 SLSILK--KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHG-RGKVAIDL 550 (835)
Q Consensus 474 ~~~~~~--~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~~~Al~l 550 (835)
..+.-. ........+...-.+++..+--..+.++++.|+.+....+...+..+|...-..-+.++++.+ ...++...
T Consensus 117 ~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~ 196 (280)
T PRK09687 117 HRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREA 196 (280)
T ss_pred cccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 443211 111223333333344466666666777777776433333333333444444444444555443 24456666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 043955 551 FYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP 629 (835)
Q Consensus 551 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 629 (835)
+..++. .+|...-...+.++...|. .++...+-...++ ++ ...-.+.+++.-|.- +|...+.++ .-.|
T Consensus 197 L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 197 FVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 666663 4555555566666666666 3444444433322 11 123455666666663 566655555 2244
Q ss_pred CHHHHHHHHHHH
Q 043955 630 TAEVWCALLGAC 641 (835)
Q Consensus 630 ~~~~~~~ll~a~ 641 (835)
|..+-..-..+|
T Consensus 266 d~~v~~~a~~a~ 277 (280)
T PRK09687 266 DNEIITKAIDKL 277 (280)
T ss_pred ChhHHHHHHHHH
Confidence 555444333333
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.91 E-value=8.5 Score=31.52 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCC
Q 043955 617 EAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 617 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 696 (835)
.++.-+-.|.+-|++.+..+-|.|||.-+|+..|.+.++-+-..-..+.+.|-.+ ..+++-.+.+.|+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~------------lqeikp~l~ELGI 95 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI------------LQEIKPTLKELGI 95 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH------------HHHHhHHHHHHCC
Confidence 3333344457889999999999999999999999999997664433344444333 2456667777776
Q ss_pred c
Q 043955 697 K 697 (835)
Q Consensus 697 ~ 697 (835)
.
T Consensus 96 ~ 96 (103)
T cd00923 96 S 96 (103)
T ss_pred C
Confidence 3
No 298
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.65 E-value=54 Score=32.58 Aligned_cols=178 Identities=11% Similarity=0.033 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH--HHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQTKDL------ILWTSMINANGLHGRGKVAIDLFYKMEAE-SFAPDH--ITFL 567 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~Pd~--~t~~ 567 (835)
...|+--++- .+.|++++|.+.|+.+..+.+ -+--.++-++-+.|++++|+..+++.... +-.||. +.|.
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3445444433 367999999999999986422 23444566777899999999999998874 233332 4454
Q ss_pred HHHHHhccc----CcHHHHHH---HHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHH
Q 043955 568 ALLYACSHS----GLINEGKK---FLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVW--CALL 638 (835)
Q Consensus 568 ~ll~a~~~~----g~~~~a~~---~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~--~~ll 638 (835)
..|+-+... .+...+.+ -|+....+| |+. .--.+|..-+... -|.... .+..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~---~d~LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKL---NDALAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHH---HHHHHHHHHHHH
Confidence 444422211 22222333 333333333 211 1111111111110 000000 1122
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCCC---chHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNPG---NYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
.-+...|...-|..=++.+++--|+-+. .+..|.+.|...|..++|.+..+-+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3355667777777777777777665444 3566677888888888888888877754
No 299
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=82.08 E-value=78 Score=34.02 Aligned_cols=144 Identities=13% Similarity=0.039 Sum_probs=107.6
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEG-LDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVD 404 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~ 404 (835)
-...|...++.-.+..-.+.|..+|-+..+.| +.++.+.+++++.-++ .++...|..+++.-++.-.++...-+..+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34567788888888888899999999999988 6778888888877654 577788888888877776666667777888
Q ss_pred HHHhcCChhhHHHHHHhcCCC---C--chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh
Q 043955 405 VYGKCGNIDYSRNVFESIESK---D--VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAA 472 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~~---~--~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~ 472 (835)
.+...++-+.|+.+|+...++ + -..|..||.-=..-|+...+..+=++|.. +-|-..+...+++-+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 888999999999999855432 2 35688888877788888888877777765 455555554444433
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.19 E-value=2.3 Score=27.37 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=21.2
Q ss_pred HHHHHhCCCchhHHHHHHHHHHhcCChhhHH
Q 043955 386 GYIIRKGLSDLVILNAIVDVYGKCGNIDYSR 416 (835)
Q Consensus 386 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 416 (835)
...++..+.+..+++.|...|...|+.++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4455666666667777777777777777765
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.16 E-value=1.2 Score=40.49 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=36.7
Q ss_pred hHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhh
Q 043955 467 SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFN 521 (835)
Q Consensus 467 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 521 (835)
.++..+.+.+.++...++++.+.+.+-..+..+.+.|+.+|++.+..+...++++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4556666666667777777777766656667777778888877776666666665
No 302
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.13 E-value=65 Score=32.53 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=67.2
Q ss_pred ChhHHHHHHHHHh-hcCCHHHHHHHHHhC--CCCCC-------------HHHHHHHH----HHHhhcCchhHHHHHHHHH
Q 043955 598 WPEHYACLVDLLG-RANHLEEAYQFVRSM--QIEPT-------------AEVWCALL----GACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 598 ~~~~y~~lv~~l~-r~g~~~eA~~~~~~m--~~~p~-------------~~~~~~ll----~a~~~~~~~~~a~~~~~~~ 657 (835)
|+.-|-..+.-.. +.--++++.+++..- .+-|+ ..+|..|+ .+|...|+...|....+++
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3444444444332 233566777766655 12221 12344444 5688899999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 658 LELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 658 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
+.++|-+...+-.|-++|+..|+--+|.+-++.|.
T Consensus 306 ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 306 LTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 99999999999999999999999888877777665
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.13 E-value=3 Score=26.41 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPD 562 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd 562 (835)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466677777777888888888877776 4554
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.05 E-value=7.3 Score=35.56 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=28.4
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.+++.+.++.+..-+--+.|+.+..-..-++++...|+|.+|.++.+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555555555555555555555555555554443
No 305
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.03 E-value=37 Score=34.83 Aligned_cols=176 Identities=13% Similarity=0.131 Sum_probs=116.1
Q ss_pred hcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHH--HhcccCcHHH
Q 043955 509 RCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT--FLALLY--ACSHSGLINE 581 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t--~~~ll~--a~~~~g~~~~ 581 (835)
-.|+..+|-..++++.+ .|..+|+--=.+|...|+.+.-...+++.... -.||... |+.=+. ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46888888888888874 58999999999999999999999999998864 3566533 332222 3467899999
Q ss_pred HHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhhcCchhHHHHH
Q 043955 582 GKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSMQIEPT-------AEVWCALLGACRVHSNKELGEIV 653 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-------~~~~~~ll~a~~~~~~~~~a~~~ 653 (835)
|.+.-++.. .|+| |.-.--....++.-.|+..|+.+|+.+-.-.-+ .--|.+-+- +-..+.++.|+.+
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~-~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF-HIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh-hhcccchhHHHHH
Confidence 998877654 6677 343444566778889999999999987621111 112332221 1233678899988
Q ss_pred HHHHH--hcCCCCCCc---hHHHHHHHHhcCCchHHHHHHH
Q 043955 654 AKKLL--ELDPGNPGN---YVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 654 ~~~~~--~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+++-+ +++.+|+.+ |.-+--+....-.|.+-.++-+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~ 310 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLAD 310 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhh
Confidence 87643 556666533 2333445555555555444433
No 306
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.92 E-value=71 Score=32.78 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
.||.- ..+-+.+++++|.+.|+-..
T Consensus 249 LW~~~-~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 249 LWNKG-KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHH-HHHHhhcCHHHHHHHHHHHH
Confidence 35553 33446788888888887543
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.45 E-value=7.9 Score=39.15 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++..+..+....|+.+.++...+++++++|-+...|..|-..|...|+...|....+.+++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3455667777888999999999999999999999999999999999999999999887775
No 308
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.23 E-value=2.5 Score=48.34 Aligned_cols=122 Identities=13% Similarity=0.215 Sum_probs=83.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
..++++.+.+.+.-.--| -++|.-+.+.|-.+-|+.+.+.=+..+ ++....|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 345666666554432212 133444567777777777765433333 44556899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 621 FVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 621 ~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
.-++. -|+.+|..|...-..+||.+.||..+++.-. +..||-+|.-.|+.++ ++|+|+-..++
T Consensus 665 ~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eK---L~Km~~iae~r 727 (1202)
T KOG0292|consen 665 AAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEK---LSKMMKIAEIR 727 (1202)
T ss_pred HHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHH---HHHHHHHHHhh
Confidence 98876 4677999999999999999999999997754 4567888888888765 45555543333
No 309
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.80 E-value=68 Score=34.29 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=61.3
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHh-hcCCHHHHHHHHHhCCC---------CCCHHHHHHH
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLG-RANHLEEAYQFVRSMQI---------EPTAEVWCAL 637 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~-r~g~~~eA~~~~~~m~~---------~p~~~~~~~l 637 (835)
+..+.+.|-+.-|.++.+-+. .++|+ +-.--.++|.|+ |+++++--+++++.... -|+ ..++.-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a 185 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA 185 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH
Confidence 456788899999999988776 77775 555556788776 88888888888876522 122 234443
Q ss_pred HHHHhhcCc--------------hhHHHHHHHHHHhcCCC
Q 043955 638 LGACRVHSN--------------KELGEIVAKKLLELDPG 663 (835)
Q Consensus 638 l~a~~~~~~--------------~~~a~~~~~~~~~l~p~ 663 (835)
|.-....+. .+.|..+.++++..-|.
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 444443333 38888899999888874
No 310
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.73 E-value=2.5 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=24.9
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
|.-++...|+.+.|.+..+.+++++|+|..+-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 44567889999999999999999999875443
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.57 E-value=11 Score=31.35 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=43.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCC
Q 043955 618 AYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 618 A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 696 (835)
++.-+-.+.+-|++.+..+-|.|||.-+|+..|.+.++-+-..-.+....|--+ ..+++-.+.+.|+
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~------------lqElkPtl~ELGI 98 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI------------LQELKPTLEELGI 98 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH------------HHHHHHHHHHHT-
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH------------HHHHhhHHHHhCC
Confidence 333344457789999999999999999999999999997765544443344333 2456666666666
No 312
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.84 E-value=22 Score=37.91 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=75.5
Q ss_pred C-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----------CC-----C------------C-CHHHHHHHH---HHHhhc
Q 043955 597 P-WPEHYACLVDLLGRANHLEEAYQFVRSM----------QI-----E------------P-TAEVWCALL---GACRVH 644 (835)
Q Consensus 597 p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----------~~-----~------------p-~~~~~~~ll---~a~~~~ 644 (835)
| .++++-.+.+++.+.|+.+.|.++++++ .+ . | |...|.+|. ......
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 5 4677777778888888888888777764 12 1 1 333455544 456667
Q ss_pred CchhHHHHHHHHHHhcCCC-CCCchHHHHHHHH-hcCCchHHHHHHHHHHcC---C-CccCCcee
Q 043955 645 SNKELGEIVAKKLLELDPG-NPGNYVLISNVFA-ASRKWKDVEQVRMRMRGS---G-LKKTPGSS 703 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~~---~-~~k~~g~s 703 (835)
|-..-|.+.++-++.++|. ||-.-.+..+.|+ ++++|+--.++.+..... . ....||..
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a 181 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA 181 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH
Confidence 8899999999999999998 8877777788887 778888777777665442 2 23467653
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.70 E-value=10 Score=33.97 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=40.5
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
+.+.+.++.+.+.+--+.|+.++.-..-++++...|+|+||.++.+...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 6777777777777777888888888888888888888888888876665544
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.65 E-value=14 Score=37.34 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=75.0
Q ss_pred hCCCccccccchhhhhhhccCChhHHHHHHHhcCCC-Cc-----ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 043955 290 QGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ-DF-----ISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVM 363 (835)
Q Consensus 290 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 363 (835)
.|......+...++..-....+++++...+-++... +. .+-.+.+. ++-.-++++++.++..=.+-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 345555666667777777778888888888777542 11 11112222 223446789999999999999999999
Q ss_pred HHHHHHHHhccccCchHHHHHHHHHHHhCCCc
Q 043955 364 IIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD 395 (835)
Q Consensus 364 t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~ 395 (835)
|+..++..+.+.++...+.++.-.++....-+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~ 168 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEAFE 168 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988888777766655433
No 315
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.00 E-value=26 Score=28.98 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=46.7
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLA 568 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ 568 (835)
..+...|++++|..+.+....||+..|-++-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34557899999999999999999999987755 46788887777777887775 566666643
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.28 E-value=7.3 Score=36.19 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 594 QLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 594 ~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
.|+|+ .+.+.|++.+|...|.+ .||... ....++.|...++++.+.+|+|..+...|-
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l------------~~d~~~---------A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFL------------TPDTAE---------AEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---------------HHH---------HHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhh------------cCChHH---------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 67886 67888888887655432 222210 111245667777777777777655544432
Q ss_pred HHHHhcCCchHHHHHHHHHHcCCC
Q 043955 673 NVFAASRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 673 ~~y~~~g~~~~a~~~~~~m~~~~~ 696 (835)
-. ++|-++...+.+.+.
T Consensus 122 ~~-------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 122 MA-------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HH-------HTHHHHHHHHHHSSS
T ss_pred HH-------HhhHHHHHHHHHHHh
Confidence 21 345556555555544
No 317
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=76.85 E-value=1.1e+02 Score=32.67 Aligned_cols=86 Identities=22% Similarity=0.119 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhcccCcH-HHHHHHH---HHhhhcCCC-CC--ChhHHHHHHHHHhhcC
Q 043955 544 GKVAIDLFYKMEAESFAPDH---ITFLALLYACSHSGLI-NEGKKFL---EIMRCDYQL-DP--WPEHYACLVDLLGRAN 613 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd~---~t~~~ll~a~~~~g~~-~~a~~~~---~~m~~~~~i-~p--~~~~y~~lv~~l~r~g 613 (835)
.++|++.|.+.-+ +.||. +-+..|+....+.-.- .+..++- ..+..+-|. ++ +---++.+..+..=+|
T Consensus 242 ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~ 319 (374)
T PF13281_consen 242 LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAG 319 (374)
T ss_pred HHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcC
Confidence 4556666666555 44554 3344455544442221 2333322 222111122 22 3345667778888899
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 043955 614 HLEEAYQFVRSM-QIEPTA 631 (835)
Q Consensus 614 ~~~eA~~~~~~m-~~~p~~ 631 (835)
+.++|.+..++| ...|..
T Consensus 320 d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 320 DYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred CHHHHHHHHHHHhhcCCcc
Confidence 999999999988 455544
No 318
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.73 E-value=2.1 Score=43.63 Aligned_cols=87 Identities=8% Similarity=0.128 Sum_probs=62.1
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 612 ANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 612 ~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
.|.+++|++.+.+. +..|+.. ++..-.+++...+....|++-+..+++++|+.+..|-.-+......|.|++|.+...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45677777766665 5555443 444444566667777778888888888888888888888888888888888888877
Q ss_pred HHHcCCCcc
Q 043955 690 RMRGSGLKK 698 (835)
Q Consensus 690 ~m~~~~~~k 698 (835)
..-+.+...
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 766665543
No 319
>PF15161 Neuropep_like: Neuropeptide-like
Probab=76.43 E-value=0.79 Score=32.29 Aligned_cols=17 Identities=47% Similarity=1.019 Sum_probs=12.6
Q ss_pred eccccccCccchhhhhhh
Q 043955 790 KNLRVCVDCHSFCKLVSR 807 (835)
Q Consensus 790 knlr~c~dch~~~k~~s~ 807 (835)
-.-|-|.|||.|- |+-+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 4579999999875 5543
No 320
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=75.62 E-value=1.2e+02 Score=32.57 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCC
Q 043955 400 NAIVDVYGKCGNIDYSRNVFESIESK---DVVSWTSMISSYVHNGLANEALELFYLMNEANV 458 (835)
Q Consensus 400 ~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~ 458 (835)
..|+.-|...|++.+|.+...++.-| ..+.+.+++.+.-+.|+-+.-+.++++...+|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 44667777778888887777776655 456677777777777777777777777665553
No 321
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=75.33 E-value=3.7 Score=36.23 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=48.9
Q ss_pred CCEEEEEEeCC-CCCcCcHHHHHHHHHHHHHhHHhCCcccCCcccccccchhHHHhhhhhhhHHHHHHHhhccCCCCCcE
Q 043955 708 GNKIHSFIARD-KSHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKSTEGSLI 786 (835)
Q Consensus 708 ~~~~~~f~~~d-~~hp~~~~i~~~l~~l~~~~~~~~~y~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~~~~~~~ 786 (835)
.+..-.|..|| ..||++..+-..|++|..+. .. . +..++--|++ +.+.||--||+.+.| ++
T Consensus 34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~-~~--~--~v~~akVDiD----------~~~~LA~~fgV~siP---TL 95 (132)
T PRK11509 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREF-PD--Y--TWQVAIADLE----------QSEAIGDRFGVFRFP---AT 95 (132)
T ss_pred CCcEEEEeCCCCCcCCccccHHHHHHHHHHHh-cC--C--ceEEEEEECC----------CCHHHHHHcCCccCC---EE
Confidence 34455899999 88999999999999998776 21 1 0123334444 357799999999998 56
Q ss_pred EEEeccc
Q 043955 787 RITKNLR 793 (835)
Q Consensus 787 ~~~knlr 793 (835)
-++||=+
T Consensus 96 l~FkdGk 102 (132)
T PRK11509 96 LVFTGGN 102 (132)
T ss_pred EEEECCE
Confidence 7777643
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.26 E-value=27 Score=32.91 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhhhcCCC--CCC----hh
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI--TFLALLYACSHSGLINEGKKFLEIMRCDYQL--DPW----PE 600 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i--~p~----~~ 600 (835)
..|..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++.....+.......... +++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467888999999999999999999999987777764 3677888888889999988888766543211 111 12
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.|..+.. ...|++.+|-+.+-..
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHcc
Confidence 2333322 2467888877777665
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.49 E-value=38 Score=37.64 Aligned_cols=147 Identities=16% Similarity=0.078 Sum_probs=98.2
Q ss_pred hcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHH
Q 043955 509 RCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLE 587 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 587 (835)
-.|+++.|..++-.+++ ..-+.++.-+...|..++|+++ .||.. -|... .+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 45788888887777763 2345566667777888887764 44432 23333 36788888888765
Q ss_pred HhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 588 IMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 588 ~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
... +..-|..|.++...+|++..|.+.+.+.. -|..|+-.+-..||.+.-..++...-+-...|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 433 45668899999999999999999888752 36777777777777775555554444433333
Q ss_pred hHHHHHHHHhcCCchHHHHHHH
Q 043955 668 YVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 668 ~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+--..|.-.|+.++..++..
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHH
Confidence 33346777888888877753
No 324
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.35 E-value=27 Score=28.89 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhh
Q 043955 401 AIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITL 465 (835)
Q Consensus 401 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~ 465 (835)
.-+..+...|++++|..+.+.+..||+..|-++-.. +.|..+++..-+.+|-.+| .|...+|
T Consensus 44 IRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 44 IRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 334455678999999999999989999999877554 5666676666677776665 4544444
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.21 E-value=65 Score=34.19 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC----CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG----NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...+|..+...|+.+|+++.|..+..++.+.++. .+...+.-+.+....|+-.+|....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3457999999999999999999999999987643 455667779999999999999887655554
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.94 E-value=5.2 Score=24.13 Aligned_cols=30 Identities=27% Similarity=0.160 Sum_probs=17.3
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 634 WCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 634 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
|..+...+...++.+.|...++++++++|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444445555556666666666666666554
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.86 E-value=6.6 Score=26.17 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777776654
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.86 E-value=4.7 Score=25.57 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
+|..+...|.+.|+.++|++.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777777777777777777766
No 329
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.82 E-value=1.4e+02 Score=32.57 Aligned_cols=173 Identities=12% Similarity=-0.023 Sum_probs=83.3
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCCcc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHhcCCh
Q 043955 34 VSNGEPLRVLETYSRMRVLGISVDAFT--FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDF--IVNSLVAMYAKCYDF 109 (835)
Q Consensus 34 ~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~ 109 (835)
++.|+.+- ++.+.+.|..|+... ..+.+..++..++.+ +.+.+++.|..|+.. -....+...++.|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 34555533 344455676665432 334455555666664 445556667655432 122345556677888
Q ss_pred HHHHHHHhhcCCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH--HHHHHHhhcCCChhHHHHHHH
Q 043955 110 RKARQLFDRMGEKE---DVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTF--VAALQACEDSSFETLGMEIHA 184 (835)
Q Consensus 110 ~~A~~~f~~m~~~~---~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~l~~ 184 (835)
+.+..+++.-.... +..-+ +.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+..+
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~---- 152 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE---- 152 (413)
T ss_pred HHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH----
Confidence 88877776542211 11122 233334455554 455555666766543221 12333334455554433
Q ss_pred HHHHhCCCCchh--HHHHHHHHHHhCCChhHHHHHHhcCCC
Q 043955 185 ATVKSGQNLQVY--VANALIAMYARCGKMTEAAGVLYQLEN 223 (835)
Q Consensus 185 ~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~ 223 (835)
.+++.|..++.. ...+-+...+..|..+-+.-+++.-..
T Consensus 153 ~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 153 LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 334445433221 112233334455666655555554443
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.04 E-value=4.1 Score=24.24 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=19.4
Q ss_pred CchHHHHHHHHhcCCchHHHHHHH
Q 043955 666 GNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 666 ~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
.....|+.+|...|++++|..+.+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788999999999999987753
No 331
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.43 E-value=32 Score=34.96 Aligned_cols=103 Identities=10% Similarity=0.096 Sum_probs=69.3
Q ss_pred hCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCe-----eeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 043955 87 CGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDV-----VLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAY 161 (835)
Q Consensus 87 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~-----~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 161 (835)
.|....+.+...++..-.....++++...+=++...|+. .+-.+.++. +-.-++++++.++..=.+.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 345555566667776666667888888887776443321 111122222 23346778888888888889999999
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhC
Q 043955 162 TFVAALQACEDSSFETLGMEIHAATVKSG 190 (835)
Q Consensus 162 t~~~ll~a~~~~~~~~~a~~l~~~~~~~g 190 (835)
|+..+|+.+.+.+++..+.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99888888888888888777766665543
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.63 E-value=15 Score=39.35 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=81.2
Q ss_pred cCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHH
Q 043955 541 HGRGKVA-IDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 541 ~g~~~~A-l~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
.|+...| .++|.-+....-.|+.+...+.+ .+|.|.++.+.+.+...... +.....+..|+..-+...|++++|+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHH
Confidence 4554443 44666666655678877666655 57888888888877655422 2334567788888888889999999
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC-CCCc
Q 043955 620 QFVRSM---QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG-NPGN 667 (835)
Q Consensus 620 ~~~~~m---~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~-~~~~ 667 (835)
..-+-| .++ ++.+...-.+..+..|-+|.+..-.++++.++|+ ++|.
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 888777 232 3333333334456667788888888888888875 4443
No 333
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.59 E-value=1.6e+02 Score=32.18 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=63.3
Q ss_pred HHHHhCCChhHHHHHHhcCCCC----CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccCC
Q 043955 203 AMYARCGKMTEAAGVLYQLENK----DSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVC--TVNAVSASGRLGN 276 (835)
Q Consensus 203 ~~y~~~g~~~~A~~~f~~~~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~ 276 (835)
...++.|+.+....+++.-... +..-++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+
T Consensus 73 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~ 147 (413)
T PHA02875 73 HDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGD 147 (413)
T ss_pred HHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 3344555655555555443221 111122 22233344443 34444555665554332 1233444445555
Q ss_pred hHhHHHHHHHHHHhCCCcccc--ccchhhhhhhccCChhHHHHHHHhcCCCCccc---HHHHHHHHHhcCChHHHHHHHH
Q 043955 277 LLNGKELHAYAIKQGFVSDLQ--IGNTLMDMYAKCCCVNYMGRVFYQMTAQDFIS---WTTIIAGYAQNNCHLKALELFR 351 (835)
Q Consensus 277 ~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~ 351 (835)
.+.++ .+++.|..++.. ...+.+...+..|..+-+..+++.-...+... .++.+...++.|+. ++.+
T Consensus 148 ~~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~ 219 (413)
T PHA02875 148 IKGIE----LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVR 219 (413)
T ss_pred HHHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHH
Confidence 54433 334445433321 22233444455566666665555544332221 12333333444543 3344
Q ss_pred HHHHcCCCCCh
Q 043955 352 TVQLEGLDADV 362 (835)
Q Consensus 352 ~m~~~g~~p~~ 362 (835)
.+.+.|..|+.
T Consensus 220 ~Ll~~gad~n~ 230 (413)
T PHA02875 220 LFIKRGADCNI 230 (413)
T ss_pred HHHHCCcCcch
Confidence 44556665553
No 334
>PF13934 ELYS: Nuclear pore complex assembly
Probab=71.34 E-value=69 Score=31.62 Aligned_cols=107 Identities=21% Similarity=0.176 Sum_probs=61.7
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 530 LWTSMINANG--LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 530 ~~~~li~~~~--~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
.+...+.||. .|+++++|++++-.- .+.|+... -++.++...|..+.|..+++.+... -.+.+.-..+..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHH
Confidence 3445555553 567777777776322 23333322 3556666678888888888865411 112333344444
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 043955 608 LLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHS 645 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~ 645 (835)
+ ...|.+.||..+.++.+-+-....|..++..|..+.
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 345788888888887753222446777777766544
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.24 E-value=1.8e+02 Score=32.09 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=97.8
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDV 405 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~ 405 (835)
|-...-+++..+.++-...-...+-.+|..-| -+...|..++..+... ..+.-..++..+++..+.+.+....|++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33445567777777777777777777777754 4556677777777776 55666778888888888888888888888
Q ss_pred HHhcCChhhHHHHHHhcCCCCc---------hhHHHHHHHHHhCCChHHHHHHHHHHhh-cCCcCChhhhHhHHHHhhcc
Q 043955 406 YGKCGNIDYSRNVFESIESKDV---------VSWTSMISSYVHNGLANEALELFYLMNE-ANVESDSITLVSALSAASSL 475 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~~~~---------~~~~~li~~~~~~g~~~~Al~lf~~m~~-~g~~p~~~t~~~ll~a~~~~ 475 (835)
|-+ ++.+.+...|.....+=+ ..|.-++.-- ..+.+.-+.+..+.+. .|..--.+.+.-+-.-+...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 877 777777777665532111 1454444311 2334444555444443 23333344444444555566
Q ss_pred cchhhHHHHHHHHHHh
Q 043955 476 SILKKGKELNGFIIRK 491 (835)
Q Consensus 476 ~~~~~a~~i~~~~~~~ 491 (835)
.++.++.++...+.+.
T Consensus 219 eN~~eai~Ilk~il~~ 234 (711)
T COG1747 219 ENWTEAIRILKHILEH 234 (711)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 6666666666655443
No 336
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.13 E-value=1e+02 Score=30.21 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=74.1
Q ss_pred HHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCCHH-HHHHHHHHhcccCcHHH
Q 043955 507 YARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKM----EAESFAPDHI-TFLALLYACSHSGLINE 581 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m----~~~g~~Pd~~-t~~~ll~a~~~~g~~~~ 581 (835)
++-.+++++|.++|.+.. +.|-...++..|=..|.+. .+.|-+-|.. ||+-.. -|.+.+++++
T Consensus 24 fgg~~k~eeAadl~~~Aa-----------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~-~cykk~~~~e 91 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA-----------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAA-NCYKKVDPEE 91 (288)
T ss_pred cCCCcchHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHhhccChHH
Confidence 334456777777776543 2222333333333333322 1233334443 343333 3455557777
Q ss_pred HHHHHHHhhhcC----CCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HhhcCchh
Q 043955 582 GKKFLEIMRCDY----QLDPWPEHYACLVDLLGRA-NHLEEAYQFVRSM-----QIEPTAEVWCALLGA---CRVHSNKE 648 (835)
Q Consensus 582 a~~~~~~m~~~~----~i~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~m-----~~~p~~~~~~~ll~a---~~~~~~~~ 648 (835)
|.+.++...+-| .+.--..|+-.+.++|..- .+++.|+..++.. .-+.++..-..+|-. -...++..
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 666665433221 1122244555666777654 6677777777666 112233333334422 22346778
Q ss_pred HHHHHHHHHHhcCCCCC
Q 043955 649 LGEIVAKKLLELDPGNP 665 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~ 665 (835)
.|..+++++....-+|+
T Consensus 172 ~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHhccch
Confidence 88999888877665554
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.83 E-value=8.4 Score=22.89 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 043955 602 YACLVDLLGRANHLEEAYQFVR 623 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~ 623 (835)
...+..++.+.|++++|+..++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456677777777777777664
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.77 E-value=48 Score=29.87 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhc--------CCCCCeeeHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhhHHHH
Q 043955 96 VNSLVAMYAKCYDFRKARQLFDRM--------GEKEDVVLWNSIISAYSASGQ-CLEALGLFREMQRVGLVTNAYTFVAA 166 (835)
Q Consensus 96 ~~~Li~~y~~~g~~~~A~~~f~~m--------~~~~~~~~~n~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 166 (835)
.|.+++-.+..+++....++++.+ ....+..+|++++.+.++... ---++.+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455555445555555555555444 111577889999999977666 44567888999888889999999999
Q ss_pred HHHhhcC
Q 043955 167 LQACEDS 173 (835)
Q Consensus 167 l~a~~~~ 173 (835)
+++|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 9988765
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.62 E-value=18 Score=34.40 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCCC--CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC----CCCchHHHHHHHHhcCCchHH
Q 043955 617 EAYQFVRSMQIEP--TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG----NPGNYVLISNVFAASRKWKDV 684 (835)
Q Consensus 617 eA~~~~~~m~~~p--~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a 684 (835)
+|.+-|-.+.-.| +....-.-|+.+....|.+.++..+-+++++.+. |+..+..|+++|...|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4554444442122 3333444556666778888888888888887554 466778888888888888776
No 340
>PRK09169 hypothetical protein; Validated
Probab=68.20 E-value=4.1e+02 Score=35.49 Aligned_cols=230 Identities=13% Similarity=0.028 Sum_probs=117.4
Q ss_pred ChhhhHhHHHHhhcccchhhHHHHHHHH----HH---hCCCCchhHHHHHHHHHHhcCChhh----HHHHhhhCCC----
Q 043955 461 DSITLVSALSAASSLSILKKGKELNGFI----IR---KGFNLEGSVASSLVDMYARCGALDI----ANKVFNCVQT---- 525 (835)
Q Consensus 461 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~---~g~~~~~~~~~~li~~y~k~g~~~~----A~~~f~~~~~---- 525 (835)
+.--++.+|.|+++.+..+..+..-..+ .. .--..++.-....+.+++|-++.+. |..++..+..
T Consensus 497 ~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l 576 (2316)
T PRK09169 497 DAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDL 576 (2316)
T ss_pred ChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhh
Confidence 3445566777777766655543332222 11 1112344444556666777655322 2233333221
Q ss_pred ---CChhHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCC---CCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC
Q 043955 526 ---KDLILWTSMINANGLHGRG----KVAIDLFYKMEAESFA---PDHITFLALLYACSHSGLINEGKKFLEIMRCDYQL 595 (835)
Q Consensus 526 ---~~~~~~~~li~~~~~~g~~----~~Al~l~~~m~~~g~~---Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i 595 (835)
-|.-.+...+.++++-+.. +.+..+..+..+..-. -|..-+...++|+++-..-+........+.....-
T Consensus 577 ~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~ 656 (2316)
T PRK09169 577 RSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLR 656 (2316)
T ss_pred hhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 2555677777788776653 3344555555443111 23445677888888887777655544443322111
Q ss_pred C------CChhHHHHHHHHHhhcCCHHHHH----HHHHhCCC------CCCHHHHHHHHHHHhhcCchhHHH----HHHH
Q 043955 596 D------PWPEHYACLVDLLGRANHLEEAY----QFVRSMQI------EPTAEVWCALLGACRVHSNKELGE----IVAK 655 (835)
Q Consensus 596 ~------p~~~~y~~lv~~l~r~g~~~eA~----~~~~~m~~------~p~~~~~~~ll~a~~~~~~~~~a~----~~~~ 655 (835)
. -+..+.+..++.|++-.+-+.+. .+..+... .-|+.-..+.+++..+--..+..+ .++.
T Consensus 657 ~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~~~LA~ 736 (2316)
T PRK09169 657 DAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAAEALAG 736 (2316)
T ss_pred cchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 1 24678888889998887755422 22222211 123333445555554444433333 3333
Q ss_pred HHHhc-CCCCCCchHHHHHHHHhcCCchHHHHHHHH
Q 043955 656 KLLEL-DPGNPGNYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 656 ~~~~l-~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
++.+- +....-.=..++|.+-..-+|-+....+..
T Consensus 737 rL~~~~~l~~a~~aQ~lAnsLNaLsKwp~~~~c~~a 772 (2316)
T PRK09169 737 RLAADADLRQAMNPQGLANSLNALSKWPQEPACQQA 772 (2316)
T ss_pred HHhcChHHHhhcCHHHHHHHHHHHHhCCCCHHHHHH
Confidence 33320 011222335688888888888776555443
No 341
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.24 E-value=90 Score=27.58 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCC
Q 043955 431 TSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGF 493 (835)
Q Consensus 431 ~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 493 (835)
..-++...+.|+-+.--+++.++.+ .-+|++.....+-.|+.++|+..++.+++..+-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445566666666666666666654 2356666666666777777777777666666666554
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.18 E-value=15 Score=34.19 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
++.|+.-++.++.++|+...++..|+|.|.+.|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3556677778888888888888888888887765
No 343
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.13 E-value=1.2e+02 Score=28.91 Aligned_cols=114 Identities=13% Similarity=0.029 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHH-----HHHHHhhcCCHHHH
Q 043955 546 VAIDLFYKMEAESFAPDHITFL--ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYAC-----LVDLLGRANHLEEA 618 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~-----lv~~l~r~g~~~eA 618 (835)
+.....+++....-+...-++. .+..+....|++++|...++.... .|.-+.+.. +..++...|++|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555566666532122222222 233457788999999888875542 233344444 44567788999999
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 619 YQFVRSMQIEPTAE--VWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 619 ~~~~~~m~~~p~~~--~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
+..++... +++-. .-..-..++...|+.+.|+..++++++.++++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99998752 22211 11122356778899999999999999998654
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.74 E-value=97 Score=30.01 Aligned_cols=126 Identities=17% Similarity=0.087 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC----hhHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW----PEHYAC 604 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~ 604 (835)
|.+.-|+.+.+.+..++|+.+.++-.++ +|.. -+-..++.-++-.|++++|..-++-.. .+.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHH
Confidence 3455677788888888999888887773 5654 344556677788899999988777554 33443 455655
Q ss_pred HHHHHhhcCCHHHHHH-HHHh--CCCCC--CHHHHHHHH-HH--HhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 605 LVDLLGRANHLEEAYQ-FVRS--MQIEP--TAEVWCALL-GA--CRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~-~~~~--m~~~p--~~~~~~~ll-~a--~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
++++- .+.. +|.. -|--| +...|-..| .+ |..-|.-+......+.+++--|..+|.
T Consensus 78 lir~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 78 LIRCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HHHHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence 55432 2222 2211 13222 233566544 43 444455666777788888888876554
No 345
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=64.92 E-value=40 Score=27.83 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 546 VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
++.+-++.+....+.|+.....+.|.||.+..++.-|.++|+..+.+-|. +...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44555566666678899999999999999999999999999988744332 3445655543
No 346
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.78 E-value=77 Score=26.74 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcC
Q 043955 379 SQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEAN 457 (835)
Q Consensus 379 ~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g 457 (835)
++|..|.+.+...+-....+.-.-+..+...|++++|...=.....||.++|-++-. .+.|..+++...+.++-..|
T Consensus 23 ~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 23 QEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 444444444444444333344445556678899999955555556789999977654 47788888888888787665
No 347
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=64.45 E-value=12 Score=24.85 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNE 455 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~ 455 (835)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777888888888888888887754
No 348
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.01 E-value=18 Score=38.99 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=67.8
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH
Q 043955 606 VDLLGRANHLEEAYQFVRSM-QIEPTAEVW-CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m-~~~p~~~~~-~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 683 (835)
.+-+...+.++.|..++.++ .++|+-+++ ..=..+..+.+++..|..-+.+++|++|...-.|+.-+..+.+.+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 34445567777777777766 778866543 3333677788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 043955 684 VEQVRMRMR 692 (835)
Q Consensus 684 a~~~~~~m~ 692 (835)
|.......+
T Consensus 91 A~~~l~~~~ 99 (476)
T KOG0376|consen 91 ALLDLEKVK 99 (476)
T ss_pred HHHHHHHhh
Confidence 988775443
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.91 E-value=1.5e+02 Score=33.94 Aligned_cols=152 Identities=14% Similarity=0.038 Sum_probs=78.9
Q ss_pred hcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHhcccC-----cHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 540 LHGRGKVAIDLFYKMEA-------ESFAPDHITFLALLYACSHSG-----LINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 540 ~~g~~~~Al~l~~~m~~-------~g~~Pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
...+.+.|+..|+.+.. .| +......+..+|.+.. +.+.|..++...... | .|+...+-...-
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 44456666666666655 33 1123344444454433 334466666544321 1 222222211111
Q ss_pred HHhh-cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHh--hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc-CCc
Q 043955 608 LLGR-ANHLEEAYQFVRSMQ--IEPTAEVWCALLGACR--VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAAS-RKW 681 (835)
Q Consensus 608 ~l~r-~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~--~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~ 681 (835)
..+. -.+...|.+++..+. --+++..|-++.-.+. ...|.+.|...++++-+.+ ++.+...++.+|+-. +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccc
Confidence 1222 134567777776662 2233333433332222 3457788888888888877 455556666655533 888
Q ss_pred hHHHHHHHHHHcCCCcc
Q 043955 682 KDVEQVRMRMRGSGLKK 698 (835)
Q Consensus 682 ~~a~~~~~~m~~~~~~k 698 (835)
+.+.-....+++.|.+-
T Consensus 414 ~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEV 430 (552)
T ss_pred cHHHHHHHHHHHhhhhH
Confidence 88877777777766543
No 350
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=62.55 E-value=14 Score=22.89 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=14.7
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
.++...|+.+.|...++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444556666666666666666664
No 351
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.24 E-value=1.2e+02 Score=32.87 Aligned_cols=128 Identities=14% Similarity=0.026 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhc--ccCcHHHHHHHHHHhhhcCCC-CCChhHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI--TFLALLYACS--HSGLINEGKKFLEIMRCDYQL-DPWPEHYACL 605 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~i-~p~~~~y~~l 605 (835)
|......| .++++..|.++|+++... +.++.. .+..+..+|. ..-+.++|.++|+........ .-...++..+
T Consensus 135 ~~~a~~l~-n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 135 WRRAKELF-NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 44444444 778999999999999886 555554 2233333332 455677888888866543111 1123445555
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHH-HHHHHHHHHh--hcCchhHHHHHHHHHHhc
Q 043955 606 VDLLGRANHLEEAYQFVRSMQIEPTAE-VWCALLGACR--VHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m~~~p~~~-~~~~ll~a~~--~~~~~~~a~~~~~~~~~l 660 (835)
+..+-....+..+.+....-+-+|... +..-+.+|-| ..|+.+.|..-+-+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 213 VEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 554444444443333333322222233 3334445655 357888886666666554
No 352
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.07 E-value=1.4e+02 Score=27.77 Aligned_cols=121 Identities=11% Similarity=0.012 Sum_probs=80.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChh-HHH--HHHHHHhhcC
Q 043955 538 NGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE-HYA--CLVDLLGRAN 613 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~-~y~--~lv~~l~r~g 613 (835)
+++.|..++|+.-|..+.+.|...-.+ .-.-........|+..+|...|+.+-.+- -.|.+. -.. --.-+|...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 567788888888888888877654332 22233344678889999999999887552 223221 111 1234566789
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 614 HLEEAYQFVRSMQIEPT---AEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 614 ~~~eA~~~~~~m~~~p~---~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
.+++...-++.+..+.+ ...-.+|.-+-.+.|++..|...++++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 99998888887733322 22445666677788999999999888776
No 353
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=60.89 E-value=57 Score=27.26 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 546 VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
+..+-++.+....+.|+.....+.|.||.+..++.-|.++|+..+.+-| +..+.|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3444555666667889999999999999999999999999998886544 33346766654
No 354
>PRK13342 recombination factor protein RarA; Reviewed
Probab=60.81 E-value=2.6e+02 Score=30.65 Aligned_cols=119 Identities=12% Similarity=0.043 Sum_probs=65.3
Q ss_pred CCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhc---CCCCcccHHHHH
Q 043955 258 KPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQM---TAQDFISWTTII 334 (835)
Q Consensus 258 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li 334 (835)
..+......++..+ .|+...+..+++.+...+-.. ..+....++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHHHhhhhhccCCCccHHHHHH
Confidence 33444444444433 577777777776655431000 122222333221 122333455666
Q ss_pred HHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccc-----CchHHHHHHHHHHHhCCC
Q 043955 335 AGYAQ---NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLK-----CMSQTKEIHGYIIRKGLS 394 (835)
Q Consensus 335 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-----~~~~~~~i~~~~~~~~~~ 394 (835)
+++.+ .++++.|+.++..|...|..|....-..+..++...| .+..+...+..+...|+|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 66665 4889999999999999999888766555555544433 233344444444445554
No 355
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.69 E-value=1.6e+02 Score=28.12 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=54.5
Q ss_pred hccccCchHHHHHHHHHHHhCCCch---hHHHHHHHHHHhcCChhhHHHHHHhcCCCCchh--HHHHHHHHHhCCChHHH
Q 043955 372 CSGLKCMSQTKEIHGYIIRKGLSDL---VILNAIVDVYGKCGNIDYSRNVFESIESKDVVS--WTSMISSYVHNGLANEA 446 (835)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A 446 (835)
....++++.|...+...+...-+.. .+--.|.......|.+|+|.+.++...+++-.+ -..-.+.+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4455566666655555554333322 134456667778888888888888776654333 22223567888888888
Q ss_pred HHHHHHHhhcC
Q 043955 447 LELFYLMNEAN 457 (835)
Q Consensus 447 l~lf~~m~~~g 457 (835)
..-|.+.+..+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 88888887764
No 356
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.52 E-value=38 Score=34.81 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=76.5
Q ss_pred HHHhhhc-CCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCchhHHHHHHHH
Q 043955 586 LEIMRCD-YQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT--AEVWCALLGACRVHSNKELGEIVAKK 656 (835)
Q Consensus 586 ~~~m~~~-~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~ 656 (835)
+++|+.+ +.-+|+ .++|--=++-|.+..++..|.+++.+- .-.|| ++.|..-..+-.-.||+..+..-..+
T Consensus 65 LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~ 144 (390)
T KOG0551|consen 65 LQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSA 144 (390)
T ss_pred HHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 344553 566766778888999999999999775 22343 33455554444555999999999999
Q ss_pred HHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 657 LLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 657 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
++.++|.+...|..=+..+....++++|..+-+
T Consensus 145 al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 145 ALKLKPTHLKAYIRGAKCLLELERFAEAVNWCE 177 (390)
T ss_pred HHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998888777766543
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=58.66 E-value=55 Score=31.29 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC--CCChhHHHHHHHHHhhcCCHHHHH
Q 043955 545 KVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQL--DPWPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 545 ~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i--~p~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
++|++.|-++...+.- +....-..|..+.-..+.+.++.++....+-+.- +++++.+..|+.++-+.|++++|+
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455555555554433 2233333333333455556666655544433221 345566666666666666666654
No 358
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=58.63 E-value=20 Score=29.87 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=50.3
Q ss_pred HhhhhhhhHHHHHHHhhccCCCCCcEEEEeccccccCccchhhhhhhhhCceEEeecCC
Q 043955 761 VQMLYGHSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGRELVVRDAN 819 (835)
Q Consensus 761 ~~~~~~hse~la~~~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~~ 819 (835)
+..|.-|.|.-++--=-.+.-+|..+-|.--++-|..|-.+|.-.|.-+|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 45688899988876544555569999999999999999999999999999999998854
No 359
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.52 E-value=54 Score=35.50 Aligned_cols=108 Identities=20% Similarity=0.293 Sum_probs=57.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc---CCH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRA---NHL 615 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~---g~~ 615 (835)
...|++.+|+..|+.++.. ..+.........+++.+++...+ +| ..+.-+.+-.|. ...
T Consensus 215 ~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icr-EY-------ilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 215 FTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICR-EY-------ILGLSIELERRELPKDPV 276 (422)
T ss_dssp HHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHH-HH-------HHHHHHHHHHCTS-TTTH
T ss_pred HhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHhccccch
Confidence 3668888888888887642 22223333344555555554332 11 111222222222 122
Q ss_pred HHH---HHH---HHhCCCCCCHH--HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 616 EEA---YQF---VRSMQIEPTAE--VWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 616 ~eA---~~~---~~~m~~~p~~~--~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
++. .++ |....++|... ++++-++.+.+++|+..|-..+++++++.|..
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 222 222 22336666433 57777788999999999999999999999853
No 360
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.35 E-value=15 Score=35.54 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=44.8
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC
Q 043955 608 LLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG 666 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 666 (835)
++...|+-+-|.+++++. ..-| ....|--+...--+.|+++.|..++++.++++|++.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 345677777788888777 4445 4557888877777889999999999999999987643
No 361
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.28 E-value=80 Score=35.09 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCChhhHHHHhhhCC
Q 043955 501 SSLVDMYARCGALDIANKVFNCVQ 524 (835)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~f~~~~ 524 (835)
..|+.-|.+++++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 357778999999999999998886
No 362
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.75 E-value=4.4e+02 Score=32.39 Aligned_cols=255 Identities=9% Similarity=-0.060 Sum_probs=141.4
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCc
Q 043955 316 GRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSD 395 (835)
Q Consensus 316 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~ 395 (835)
..+...+..+|...-...+..+.+.+. +++...+..... .+|...-...+.++...+........+...++ .++
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~--~~d 697 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG--SPD 697 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc--CCC
Confidence 345555566777777667777776665 334454444443 23333333444444433221111122222222 234
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcc
Q 043955 396 LVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSL 475 (835)
Q Consensus 396 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~ 475 (835)
..+..+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....+....
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 45666666666654422 23345556667777655666666666554332 12222 245555555566666666
Q ss_pred cchhh-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHH-HHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 476 SILKK-GKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIAN-KVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 476 ~~~~~-a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~-~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
+..+. +...+..+. -++|..+-.+.+..+++.|..+.+. .+...+..+|...-..-+.++...|. ++++..+-.
T Consensus 770 ~~~~~~~~~~L~~ll---~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALT---GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHh---cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 55432 222233322 3567888889999999999876553 34455556666566666777777765 567777777
Q ss_pred HHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043955 554 MEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRC 591 (835)
Q Consensus 554 m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (835)
+++ .||...-...+.++...+.-..+...+....+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 774 66776666677777765444566766665554
No 363
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.72 E-value=20 Score=34.96 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=50.8
Q ss_pred CHHHHHHHHHhC-CCCCCHHH-HHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 614 HLEEAYQFVRSM-QIEPTAEV-WCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 614 ~~~eA~~~~~~m-~~~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
++++|...+.+. .+.|...+ |..=.-.+.+-++.+..+.-.+++++++|+..-.+..|++.......+++|..+....
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 444444444333 45565543 3333333344577777777788888888887777888888888888888887776554
Q ss_pred H
Q 043955 692 R 692 (835)
Q Consensus 692 ~ 692 (835)
.
T Consensus 105 ~ 105 (284)
T KOG4642|consen 105 Y 105 (284)
T ss_pred H
Confidence 3
No 364
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.14 E-value=91 Score=30.79 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=66.2
Q ss_pred CChhhHHHHhhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 043955 511 GALDIANKVFNCVQT-KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIM 589 (835)
Q Consensus 511 g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 589 (835)
+++++|.+.+-.-.- ++-. .-++.++...|+.+.|+.+++.+.-....|+.++. ++.+ ...|.+.||+.+-+..
T Consensus 92 ~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~--~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 92 GDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLSSPEALTL--YFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHH--HHHH-HHcCCHHHHHHHHHhC
Confidence 667777777643321 1222 23777888889999999998886543333333332 2222 3448899999887755
Q ss_pred hhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH
Q 043955 590 RCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAE 632 (835)
Q Consensus 590 ~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~ 632 (835)
.... ....+.+++..+.....-....+.+-.+|+.+...
T Consensus 167 ~~~~----~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 167 PDEL----RRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred chhh----hHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 4311 13456666666654333234445555668877654
No 365
>PRK10941 hypothetical protein; Provisional
Probab=55.25 E-value=57 Score=33.14 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=42.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
+-.+|.+.++++.|+...+.+ -+.| |+.-|+--.-.+..-|....|..-++..++.-|+++.+-.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 445566677777777777766 4455 3445666666667777777777777777777777665543
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.14 E-value=22 Score=21.08 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
.|..+...|...|+.++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666666667777777777766654
No 367
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.52 E-value=5e+02 Score=31.98 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=33.3
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043955 494 NLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKV-AIDLFYKMEAESFAPDHITFLALLYA 572 (835)
Q Consensus 494 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~-Al~l~~~m~~~g~~Pd~~t~~~ll~a 572 (835)
++|..+-...+..+++.+..+. +......+|...-...+.++...|..+. +...+.++.. .||...-...+.+
T Consensus 725 D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~a 798 (897)
T PRK13800 725 DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAA 798 (897)
T ss_pred CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHH
Confidence 3444444444444444433221 2222333444444444444444443321 2333334332 3444444444555
Q ss_pred hcccCcHH
Q 043955 573 CSHSGLIN 580 (835)
Q Consensus 573 ~~~~g~~~ 580 (835)
+...|..+
T Consensus 799 Lg~~g~~~ 806 (897)
T PRK13800 799 LAELGCPP 806 (897)
T ss_pred HHhcCCcc
Confidence 55555433
No 368
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.49 E-value=27 Score=22.86 Aligned_cols=32 Identities=16% Similarity=-0.076 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcCchhHHHHH--HHHHHhcCCCC
Q 043955 633 VWCALLGACRVHSNKELGEIV--AKKLLELDPGN 664 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~--~~~~~~l~p~~ 664 (835)
-|-++...+..+|+.+.|+.. ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355666777888888888888 55777777764
No 369
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=53.95 E-value=1.6e+02 Score=29.95 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCCccHHHHHHHHhc-cC-CchHHHHHHHHHHHh-CCCCCcchHHHHHH
Q 043955 26 WNAMLGAYVSNGEPLRVLETYSRMRV-LGISVDAFTFPCVIKACAM-LK-DLDCGAKIHGLVLKC-GYDSTDFIVNSLVA 101 (835)
Q Consensus 26 ~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~-~~-~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~ 101 (835)
|..|+. ++....+|+.+|+..-. ..+-.|......+++.... .+ .+..--++.+.+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 34456678888774332 3456677777788877765 22 333334444555433 45667778888999
Q ss_pred HHHhcCChHHHHHHHhhcC----CCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 043955 102 MYAKCYDFRKARQLFDRMG----EKEDVVLWNSIISAYSASGQCLEALGLFR 149 (835)
Q Consensus 102 ~y~~~g~~~~A~~~f~~m~----~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 149 (835)
.+++.+++..-.++++.-. ...|...|..+|......|+..-...+..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 9999999999999988751 22588899999999999999875555443
No 370
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.70 E-value=7.1e+02 Score=33.52 Aligned_cols=337 Identities=13% Similarity=0.050 Sum_probs=160.9
Q ss_pred cchhhhhhhccCChhHHHHHHHh-cCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccc
Q 043955 299 GNTLMDMYAKCCCVNYMGRVFYQ-MTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDAD-VMIIGSVLMACSGLK 376 (835)
Q Consensus 299 ~~~Li~~y~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~ 376 (835)
+..|...|+.-+++|...-+... ...+ +...-|.-....|++..|...|+++.+. .|+ ..++..++..-...+
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhccc
Confidence 33344466666666665555442 2221 2233444556678888888888888765 344 556666666655566
Q ss_pred CchHHHHHHHHHHHhCCCchh-HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHH-HH-HHHhCCChH--HHHHHHH
Q 043955 377 CMSQTKEIHGYIIRKGLSDLV-ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSM-IS-SYVHNGLAN--EALELFY 451 (835)
Q Consensus 377 ~~~~~~~i~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l-i~-~~~~~g~~~--~Al~lf~ 451 (835)
.++...-..+.+.....+... .++.=+.+-.+.+++|.-..... .++..+|.+. +. ...+..+-+ .-.++..
T Consensus 1498 ~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~ 1574 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIE 1574 (2382)
T ss_pred chhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHH
Confidence 665555433333333222222 33433444467777777666655 5677777765 22 222222111 1112333
Q ss_pred HHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----C
Q 043955 452 LMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-----K 526 (835)
Q Consensus 452 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~ 526 (835)
.+++.-+ .=+.+|+..+.+..+. ..++....-+.--.....++ .... .
T Consensus 1575 ~~r~~~i--------~~lsa~s~~~Sy~~~Y------------------~~~~kLH~l~el~~~~~~l~-~~s~~~~s~~ 1627 (2382)
T KOG0890|consen 1575 NSRELVI--------ENLSACSIEGSYVRSY------------------EILMKLHLLLELENSIEELK-KVSYDEDSAN 1627 (2382)
T ss_pred HHHHHhh--------hhHHHhhccchHHHHH------------------HHHHHHHHHHHHHHHHHHhh-ccCccccccc
Confidence 3333211 1233444443222221 12221111111111111111 1110 0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChh
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYK-MEAESFAPDH-----ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE 600 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~-m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~ 600 (835)
+..-|-.-+.-=....+..+-+--+++ |.....+|+. .+|.....-+..+|..+.|..+.-...+. + -++
T Consensus 1628 ~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~ 1703 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES-R---LPE 1703 (2382)
T ss_pred cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cch
Confidence 112333322221112222222222222 2222223332 45777777777888888887765433321 1 234
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----------CCCCCHHHHHHHHH--------HHhh-cCc--hhHHHHHHHHHHh
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM----------QIEPTAEVWCALLG--------ACRV-HSN--KELGEIVAKKLLE 659 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m----------~~~p~~~~~~~ll~--------a~~~-~~~--~~~a~~~~~~~~~ 659 (835)
.+.--...+-..|+-..|+..+++- |.+|.+..-+.+.. -+.. .+| .+.-...+..+.+
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKA 1783 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4555667778888888888777653 22222332222221 1111 133 3445678889999
Q ss_pred cCCCCCCchHHHHHH
Q 043955 660 LDPGNPGNYVLISNV 674 (835)
Q Consensus 660 l~p~~~~~~~~l~~~ 674 (835)
..|+....|+.|+.-
T Consensus 1784 il~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1784 ILPEWEDKHYHLGKY 1798 (2382)
T ss_pred HcccccCceeeHHHH
Confidence 999877777777733
No 371
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.48 E-value=4.6e+02 Score=31.27 Aligned_cols=187 Identities=11% Similarity=-0.002 Sum_probs=92.3
Q ss_pred HhcCChhhHHHHhhhCC----CCCh-------hHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q 043955 508 ARCGALDIANKVFNCVQ----TKDL-------ILWTSMINANG-LHGRGKVAIDLFYKMEAESFAPD-----HITFLALL 570 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~----~~~~-------~~~~~li~~~~-~~g~~~~Al~l~~~m~~~g~~Pd-----~~t~~~ll 570 (835)
.-..++++|..+..+.. .++. ..|+++-...+ ..|+.++|+++-+..... +.++ .+.+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-LPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cccccchhhhhhhhhhh
Confidence 34566777666665432 2221 25666644433 457778888887777653 2222 23344444
Q ss_pred HHhcccCcHHHHHHHHHHhh---hcCCCCC-ChhHHHHHHHHHhhcCCHHHHHH--H---HHhC--CCCCCH-HHHHHHH
Q 043955 571 YACSHSGLINEGKKFLEIMR---CDYQLDP-WPEHYACLVDLLGRANHLEEAYQ--F---VRSM--QIEPTA-EVWCALL 638 (835)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~---~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~--~---~~~m--~~~p~~-~~~~~ll 638 (835)
.+..-.|..++|..+..... +.|++.+ ..-.-..-..++-.+|+...|.. . ++.- +-+|-. .....-+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 55556778888877665433 3333322 11111112334556663333222 2 2211 222321 1112222
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCC-------CchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNP-------GNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~-------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
...+.+-+.+.++..+.+.+++.-... ..+..|+.++...|+.++|..-...+....
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 223333336666666666555432211 122377888888888888877666655433
No 372
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.36 E-value=95 Score=29.56 Aligned_cols=58 Identities=26% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH---HHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALL---GACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll---~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
-.-++.+.++++.|++-..+. .+.|.. -.+|. -++-....++.|..-++++++++|..
T Consensus 140 raaa~iKl~k~e~aI~dcsKaiel~pty--~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 140 RAAALIKLRKWESAIEDCSKAIELNPTY--EKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHhhHhcCchh--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 334445555666665544443 333422 12332 34555567888888999999999964
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.33 E-value=27 Score=27.56 Aligned_cols=47 Identities=9% Similarity=-0.085 Sum_probs=29.4
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQF 621 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~ 621 (835)
++...++|+..+.+..+...-.|+ -.+.+|++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666544333332 45667777777777777777665
No 374
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.86 E-value=20 Score=29.33 Aligned_cols=40 Identities=8% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 652 IVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 652 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
...++.++.+|+|...-..|+..|...|++++|.+..-.+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455556666666666666666666666666666554433
No 375
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=52.68 E-value=1.6e+02 Score=32.01 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=93.7
Q ss_pred cCcHHHH-HHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCchhHHHH
Q 043955 576 SGLINEG-KKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEVWCALLGACRVHSNKELGEI 652 (835)
Q Consensus 576 ~g~~~~a-~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~~~~~~a~~ 652 (835)
.|++-.| .++|..++ .+.- ++.|...........|.++.|+..+... -+.....+...++......|+.+.|..
T Consensus 302 ~gd~~aas~~~~~~lr-~~~~--~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALR-NQQQ--DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHH-hCCC--CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4554444 55666555 3333 3445444556677889999999999877 234455677888888888899999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCC
Q 043955 653 VAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARD 718 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d 718 (835)
.++.++.-+-+++.....-+-.--+.|-.+++...+|..-.-. .+...-|+..-.....|-.|+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccCcc
Confidence 9999998887777766554444556677888888887766533 333345776655555666555
No 376
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.96 E-value=1.5e+02 Score=25.15 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITF 566 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~ 566 (835)
+..+.+.|++++|...=.....||+..|-++-. .+.|..+++..-+.++..+| .|....|
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 344567788888855555566788888876644 46777788877777776654 4444444
No 377
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.92 E-value=1.3e+02 Score=29.63 Aligned_cols=75 Identities=12% Similarity=-0.036 Sum_probs=36.3
Q ss_pred CChhhHHHHhhhCC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhcccCcHHHHHHHH
Q 043955 511 GALDIANKVFNCVQ--TKDL-ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLA-LLYACSHSGLINEGKKFL 586 (835)
Q Consensus 511 g~~~~A~~~f~~~~--~~~~-~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~-ll~a~~~~g~~~~a~~~~ 586 (835)
.++++|..-+.+.. .|++ .-|+.-+..|.+..+++.+..--.+.++ +.||.+-=.. +..+......+++|+..+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 44555555554433 3433 3345555566666666666555555555 5555543222 222233444444444444
Q ss_pred H
Q 043955 587 E 587 (835)
Q Consensus 587 ~ 587 (835)
.
T Consensus 102 q 102 (284)
T KOG4642|consen 102 Q 102 (284)
T ss_pred H
Confidence 3
No 378
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.15 E-value=1.3e+02 Score=27.15 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHhcccCc-HHHHHHHHHHhhhcCCCCCChhHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPD-------HITFLALLYACSHSGL-INEGKKFLEIMRCDYQLDPWPEHY 602 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-------~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~i~p~~~~y 602 (835)
.|.++.-.+..++..-.+.+++.+.. +.|+ ..+|..++.+.+...- ---+..+|+-|++ .++++++..|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~--l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy 118 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHF--LNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHH
Confidence 34444444445555555555555432 3332 3457777777776666 4456677777775 4667777888
Q ss_pred HHHHHHHhhc
Q 043955 603 ACLVDLLGRA 612 (835)
Q Consensus 603 ~~lv~~l~r~ 612 (835)
.||+....|.
T Consensus 119 ~~li~~~l~g 128 (145)
T PF13762_consen 119 SCLIKAALRG 128 (145)
T ss_pred HHHHHHHHcC
Confidence 8887766554
No 379
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.93 E-value=4.7e+02 Score=30.63 Aligned_cols=262 Identities=10% Similarity=0.005 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~ 477 (835)
+....+..+++.++.....+ |..-+..+...--....+....|+.++|....+.+-..|- ..+.....++..+...|.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC
Confidence 55556666667777777777 4322233444445566777788888888888777766552 334555666766665554
Q ss_pred hhhHHHHHHHHHHhCC--------------CCc-hhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHH--h
Q 043955 478 LKKGKELNGFIIRKGF--------------NLE-GSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANG--L 540 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~--------------~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~--~ 540 (835)
+.... +...+...=. .++ .....+++..+.+-.+++. .+.... ++...-...+.++. .
T Consensus 179 lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~---~~~~~~-~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 179 QDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVET---FARTTG-PTDFTRQMAAVAFASVA 253 (644)
T ss_pred CCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHH---HhhccC-CChhhHHHHHHHHHHHH
Confidence 43322 1222211111 111 1122333333333222222 222111 11111111122222 2
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHH
Q 043955 541 HGRGKVAIDLFYKMEAE-SFAPDHI--TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~-g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~e 617 (835)
..+.+.|..++.+.... +..++.. ....+.......+..+++..+++..... ..+.+...--+.+-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34567888888877443 3333332 2333333333333356677777654321 1233333334445458899999
Q ss_pred HHHHHHhCCCCC-CHHHHHH-HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 618 AYQFVRSMQIEP-TAEVWCA-LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 618 A~~~~~~m~~~p-~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
+...|..||-.- +..-|.- +..+....|+.+.|...++++.. + ...|-.|+.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 999999985322 2223332 33444557999999999988743 2 346666643
No 380
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=50.56 E-value=25 Score=30.09 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=50.0
Q ss_pred eEEEECCEEEEEEeCCC-CCcCcHHHHHHHHHHHHHhHHhCCcccCCcccccccchhHHHhhhhhhhHHHHHHHhhccCC
Q 043955 703 SWIEIGNKIHSFIARDK-SHSESDEIYKKLAEITEKLEREGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKST 781 (835)
Q Consensus 703 s~i~~~~~~~~f~~~d~-~hp~~~~i~~~l~~l~~~~~~~~~y~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~~ 781 (835)
+|++.+|.+..|...+. ++|...+|...|+++.+++ ... ..+..-|++++ ..||-.|++.+.|
T Consensus 22 ~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~-~~~-----v~f~kVdid~~----------~~la~~f~V~sIP 85 (111)
T cd02965 22 DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAF-PGR-----FRAAVVGRADE----------QALAARFGVLRTP 85 (111)
T ss_pred HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHC-CCc-----EEEEEEECCCC----------HHHHHHcCCCcCC
Confidence 34566677777777774 8999999999999998776 221 22333444432 3588889999988
Q ss_pred CCCcEEEEeccc
Q 043955 782 EGSLIRITKNLR 793 (835)
Q Consensus 782 ~~~~~~~~knlr 793 (835)
++.++||=+
T Consensus 86 ---Tli~fkdGk 94 (111)
T cd02965 86 ---ALLFFRDGR 94 (111)
T ss_pred ---EEEEEECCE
Confidence 677777644
No 381
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=50.03 E-value=2.7e+02 Score=33.87 Aligned_cols=119 Identities=19% Similarity=0.184 Sum_probs=71.1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhc
Q 043955 567 LALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEP-TAEVWCALLGACRVH 644 (835)
Q Consensus 567 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~ 644 (835)
.+.|+++.+.+. .+....++...+.+.-+|- ++-|-.+.-.-.+.+-++...++.+.-.+.+ ++--.++|+++....
T Consensus 708 ~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~ 786 (863)
T TIGR02414 708 LAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANN 786 (863)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhc
Confidence 344555544333 2333344444445555664 4555555544444555555555554443433 333467888887432
Q ss_pred Cc------hhH-HHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHH
Q 043955 645 SN------KEL-GEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 645 ~~------~~~-a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 686 (835)
+. -.. =..+++.+++++|-||..-..|...+..-.++++..+
T Consensus 787 n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~ 835 (863)
T TIGR02414 787 NLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQ 835 (863)
T ss_pred CcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHH
Confidence 22 222 3568899999999999998889999888888887665
No 382
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.61 E-value=48 Score=31.94 Aligned_cols=62 Identities=21% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG 666 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 666 (835)
-+.-|.+.++++||+...+.- .-+|. ...-..|...+...|+.++|..-.+-+-+++|++..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 344566677777777665443 44553 333444555666667777776666666677776543
No 383
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=49.49 E-value=7.8 Score=40.60 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=23.3
Q ss_pred hHHHhhhhhhhHHHHHHHhhc-cCCCCCcEEE
Q 043955 758 EEKVQMLYGHSERLAIAYGVL-KSTEGSLIRI 788 (835)
Q Consensus 758 ~~k~~~~~~hse~la~~~~~~-~~~~~~~~~~ 788 (835)
+.++...+.+.=|||+||++| +.|||+..|.
T Consensus 10 ~~~~~~wyl~tsKlAlAlAIIrsKPpg~s~Re 41 (375)
T PF13971_consen 10 EQQQLSWYLKTSKLALALAIIRSKPPGKSSRE 41 (375)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 345555666788999999999 5788977654
No 384
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.44 E-value=4.9e+02 Score=30.45 Aligned_cols=80 Identities=10% Similarity=-0.151 Sum_probs=46.4
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC---CCCCchHHHHHHHHhcCCch
Q 043955 606 VDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDP---GNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~ 682 (835)
+..|...|+..+|..++..+--..+......+...-..+|..+.+..+..+....+. .-|..|.-...-++..-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 456677889999988887762234545555555556678888888887765432111 12233444444444444444
Q ss_pred HHH
Q 043955 683 DVE 685 (835)
Q Consensus 683 ~a~ 685 (835)
.+.
T Consensus 494 ~~l 496 (644)
T PRK11619 494 QSY 496 (644)
T ss_pred HHH
Confidence 443
No 385
>PRK14015 pepN aminopeptidase N; Provisional
Probab=48.97 E-value=3e+02 Score=33.58 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=73.3
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEP-TAEVWCALLGACRV 643 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~ 643 (835)
-.+.|+++.+.+.. +....++...+.+.-+|- ++-|-.+.-.-.+.+-++...++.+.-.+.+ ++--.++|+++...
T Consensus 717 ~~~al~~l~~~~~~-~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~ 795 (875)
T PRK14015 717 RLAALSALVNADLP-ERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAA 795 (875)
T ss_pred HHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhh
Confidence 34455555544432 223333333345555664 5566655555445555666666655443443 33346888888743
Q ss_pred cCc------hhHH-HHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHH
Q 043955 644 HSN------KELG-EIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 644 ~~~------~~~a-~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
++- -..| ..+++.+++++|-||..-..|...+..-.++++..+.
T Consensus 796 ~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 796 ANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred cCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 322 2333 5688999999999999988898888888888876653
No 386
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=48.89 E-value=23 Score=21.91 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=12.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 043955 534 MINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 534 li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
+...|.+.|+.++|++.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34445555666666666666554
No 387
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.59 E-value=8.4e+02 Score=32.89 Aligned_cols=304 Identities=12% Similarity=0.050 Sum_probs=162.5
Q ss_pred HhccccCchHHHHHHHHHHHhCCC---chhHHHHHHHHHHhcCChhhHHHHHHh-cCCCCchhHHHHHHHHHhCCChHHH
Q 043955 371 ACSGLKCMSQTKEIHGYIIRKGLS---DLVILNAIVDVYGKCGNIDYSRNVFES-IESKDVVSWTSMISSYVHNGLANEA 446 (835)
Q Consensus 371 a~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~li~~y~k~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A 446 (835)
+-.+.+.+..|...++.-.....+ ....+..+...|+..+++|...-+... ..+++. ..-|.-....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHH
Confidence 334445555555555443111111 122555566688888888777666552 333332 2345556678999999
Q ss_pred HHHHHHHhhcCCcCC-hhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCChhhHHHHhhhCC
Q 043955 447 LELFYLMNEANVESD-SITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGS-VASSLVDMYARCGALDIANKVFNCVQ 524 (835)
Q Consensus 447 l~lf~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~ 524 (835)
...|+++.+. .|+ ..+++.++...-..+.++...-..+....+ ...... .++.=+.+--+.++++.-.....
T Consensus 1469 ~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 9999999874 455 667777777666666665554433322221 122222 22333344456666666655544
Q ss_pred CCChhHHHHH-HHH-HHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh----------h
Q 043955 525 TKDLILWTSM-INA-NGLHG--RGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIM----------R 590 (835)
Q Consensus 525 ~~~~~~~~~l-i~~-~~~~g--~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m----------~ 590 (835)
.++..+|.+. +.- +.+.. +.-.-.++.+.+++. ...=+++|+..|-+-.+.++.-.+ .
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~--------~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSREL--------VIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHH--------hhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777766 222 21111 111122333333332 122345566555444444332211 1
Q ss_pred hcCCCCCChhH-H--HHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHhhcCchhHHHHHHH
Q 043955 591 CDYQLDPWPEH-Y--ACLVDLLGRANHLEEAYQFVRSM-------QIEPT-----AEVWCALLGACRVHSNKELGEIVAK 655 (835)
Q Consensus 591 ~~~~i~p~~~~-y--~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~ 655 (835)
...+.+|+... - .....-+.+.+..-.+.+-|-.+ ...|+ ..+|-.+...+|..|..+.|..+.-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 12233442111 0 11122222322222233322221 12322 3379889999999999999999888
Q ss_pred HHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 656 KLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 656 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++.+.. -+..++-.+......|+-..|..+...--+
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 887777 467899999999999999999888765443
No 388
>PF15469 Sec5: Exocyst complex component Sec5
Probab=48.36 E-value=1.5e+02 Score=28.00 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=48.6
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSN 646 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~ 646 (835)
.-|.-|...|+++.+...|......++-.. ....+. .-++|..+.+++.. ..+|..|+... ..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~---------~v~~eve~ii~~~r----~~l~~~L~~~~---~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQ---------KVWSEVEKIIEEFR----EKLWEKLLSPP---SS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHH---------HHHHHHHHHHHHHH----HHHHHHHhCCC---CC
Confidence 455667778888888887776664432221 111111 12334444443331 12444444332 56
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 647 KELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
.+......+.+++|+|+...++..|
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 6777788889999998765555444
No 389
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.31 E-value=2.9e+02 Score=27.45 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEA--ESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~--~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
.++--+.+|..+|..+-|-..+++.-+ ++++||... +.+.+|..+++. +-...--.+.|+....
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~Al-----------qlYqralavve~---~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDAL-----------QLYQRALAVVEE---DDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHH-----------HHHHHHHHHHhc---cchHHHHHHHHHHhhh
Confidence 344457789999999887777766533 246666521 112233333321 1011122456777788
Q ss_pred HHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHH---HHhhcCchhHHHHHHHHHHhc----CCCCCCchHHHHHHH
Q 043955 608 LLGRANHLEEAYQFVRSMQ-----IEPTAEVWCALLG---ACRVHSNKELGEIVAKKLLEL----DPGNPGNYVLISNVF 675 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m~-----~~p~~~~~~~ll~---a~~~~~~~~~a~~~~~~~~~l----~p~~~~~~~~l~~~y 675 (835)
+|.|..+++||-..+.+-. ++.-+..+...++ .+....|+..|++.++.--+. .|++..+...|-..|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 8999999999888776641 2221222222232 233345778888888775544 334433333333322
Q ss_pred HhcCCchHHHHHH
Q 043955 676 AASRKWKDVEQVR 688 (835)
Q Consensus 676 ~~~g~~~~a~~~~ 688 (835)
..|+-+++.+|.
T Consensus 239 -d~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 -DEGDIEEIKKVL 250 (308)
T ss_pred -ccCCHHHHHHHH
Confidence 567777776664
No 390
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.27 E-value=19 Score=36.18 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=25.6
Q ss_pred hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 611 RANHLEEAYQFVRSM-QIEPTA-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
++|+.++|..+++.+ .+.|+. .+.--+..-.-.|+++-+|-..+-+++.+.|.|+.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 345555555544433 333322 1222222223334455555555555555555554443
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.50 E-value=86 Score=26.73 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
-|..++.-|..+|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999999887
No 392
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.35 E-value=1.4e+02 Score=33.59 Aligned_cols=45 Identities=20% Similarity=0.120 Sum_probs=23.4
Q ss_pred hcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHH
Q 043955 105 KCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQ 152 (835)
Q Consensus 105 ~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 152 (835)
+.|+++.|.++..+. .+..-|..|-.+....|++..|.+.|.+..
T Consensus 649 ~lgrl~iA~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 444555554444333 234456666666666666666665555543
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.13 E-value=1.1e+02 Score=24.78 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHH
Q 043955 382 KEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEA 446 (835)
Q Consensus 382 ~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 446 (835)
.+++...+..|+-+....+.+-..-.+.|+.+.|+++.+.++ +.+-.|...++++-+.|+..-|
T Consensus 22 ~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 344555555554333333333333335677888888888888 7778888888888877765544
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.02 E-value=68 Score=35.61 Aligned_cols=95 Identities=16% Similarity=0.042 Sum_probs=64.6
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCchhH
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QI-EPTAEVWCALLGACRVHSNKEL 649 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~a~~~~~~~~~ 649 (835)
.-.|+...|...+.... ...|. -.....+..++.+.|...+|-.++.+. .+ -..+.+.-++..++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 44566677777666443 44552 334555677777778777888777655 22 2233455667778888889999
Q ss_pred HHHHHHHHHhcCCCCCCchHHH
Q 043955 650 GEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~l 671 (835)
|.++++.+++++|+++..-..|
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHH
Confidence 9999999999999987765444
No 395
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.55 E-value=22 Score=31.31 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043955 538 NGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYAC 573 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~ 573 (835)
....|.-.+|-.+|++|++.|-.||. |..||.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34556777889999999999999986 55666654
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=46.41 E-value=1.2e+02 Score=26.43 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 616 EEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 616 ~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
.+++.-+-.+.+-|++.+..+-|.|||.-+|+..|.+++|-+-..-+.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 344444445578899999999999999999999999999977654443
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.23 E-value=6.1e+02 Score=30.63 Aligned_cols=211 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCC--CchhHHHHHHHHH
Q 043955 430 WTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFN--LEGSVASSLVDMY 507 (835)
Q Consensus 430 ~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~y 507 (835)
|..|+.-|...|+.++|+++|.+....--.-|...- +.-..+.+++.+.+-+ +-...|...+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~-------------~~~e~ii~YL~~l~~~~~~Li~~y~~wv--- 570 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL-------------DGLEKIIEYLKKLGAENLDLILEYADWV--- 570 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchh-------------hhHHHHHHHHHHhcccchhHHHHHhhhh---
Q ss_pred HhcCChhhHHHHhhhCCCCChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc--------
Q 043955 508 ARCGALDIANKVFNCVQTKDLILWTS-MINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGL-------- 578 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~~~~~~~~~~-li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~-------- 578 (835)
-..+.+...++|..-.+....+.+. -+-.|......+-++..++.+....-.++..-.+.++.-|...=+
T Consensus 571 -l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~k 649 (877)
T KOG2063|consen 571 -LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGK 649 (877)
T ss_pred -hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhc
Q ss_pred --------HHHHHHHHHHhhhcCCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 043955 579 --------INEGKKFLEIMRCDYQLDPW------PEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVH 644 (835)
Q Consensus 579 --------~~~a~~~~~~m~~~~~i~p~------~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 644 (835)
+.+=...|-.....|..++. ..-|--..-+++|.|+-++|+.++-. .-
T Consensus 650 g~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~------------------~L 711 (877)
T KOG2063|consen 650 GEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVH------------------EL 711 (877)
T ss_pred cccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHH------------------Hh
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
+|++.|+.......+-++.+...|..+-.+|
T Consensus 712 ~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 712 DDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred cchhHHHHHHHHhccCCCcccHHHHHHHHHH
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.20 E-value=57 Score=23.59 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=24.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043955 534 MINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALL 570 (835)
Q Consensus 534 li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll 570 (835)
+.-|+.+.|++++|.+..+.+++ +.|+......|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 45677788888888888888888 788876555444
No 399
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=45.14 E-value=99 Score=30.22 Aligned_cols=61 Identities=13% Similarity=0.032 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcCchhH-------HHHHHHHHHhcCCC------CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 633 VWCALLGACRVHSNKEL-------GEIVAKKLLELDPG------NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~-------a~~~~~~~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++--+.+.|+..|+.+. |...++++++.+.. ......+++.++.+.|+.++|.+....+-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 45556667777777443 44445555554432 134567899999999999999998776554
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.05 E-value=3.2e+02 Score=30.72 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=22.6
Q ss_pred CchhHHHHHHHHHHhcCCC-CCCchHHHHHHHH-hcCCchHHHHH
Q 043955 645 SNKELGEIVAKKLLELDPG-NPGNYVLISNVFA-ASRKWKDVEQV 687 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~-~~g~~~~a~~~ 687 (835)
|=..-|.+..+.++.++|. ||-....+.++|+ ++..|.--.+.
T Consensus 356 GC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~ 400 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIEL 400 (665)
T ss_pred CChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHH
Confidence 4445556666666666665 5555555555555 33344433333
No 401
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.03 E-value=5.8e+02 Score=29.97 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 043955 197 VANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGR 273 (835)
Q Consensus 197 ~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 273 (835)
++...|+.+.-.|++++|-...-.|...+..-|.--+.-+...++......+ +.....+.+...|..+|..+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4566777777788888888888888777777777777777776665543333 2221112334456666666655
No 402
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.90 E-value=2.1e+02 Score=28.98 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=54.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh--
Q 043955 535 INANGLHGRGKVAIDLFYKMEA--ESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLG-- 610 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~--~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~-- 610 (835)
|.+++..+++.+++...-+--+ +.++|...-.-.+| |++.|......+.-..-.++-+-. +..-|..++.+|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p~Nq-~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDPSNQ-SLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCcccC-CchhhHHHHHHHHHH
Confidence 6677777888887665444332 12455544444444 677888777777666555442211 2333777776665
Q ss_pred ---hcCCHHHHHHHHHhCC
Q 043955 611 ---RANHLEEAYQFVRSMQ 626 (835)
Q Consensus 611 ---r~g~~~eA~~~~~~m~ 626 (835)
=.|+++||++++..-+
T Consensus 167 VLlPLG~~~eAeelv~gs~ 185 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGSA 185 (309)
T ss_pred HHhccccHHHHHHHHhcCC
Confidence 4799999999996543
No 403
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.80 E-value=28 Score=21.29 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=19.1
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
|+.+.+..+++++++..|.++..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567777778887777776666655544
No 404
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=43.39 E-value=5e+02 Score=28.78 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=35.8
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhC
Q 043955 124 DVVLWNSIISAYSASGQCLEALGLFREMQRV-GLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSG 190 (835)
Q Consensus 124 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g 190 (835)
|+..|...|.-+-+.+.+.+.-.+|.+|... +-.||...+.+. .-+....+++.++.++-.-++..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhcC
Confidence 6777777777666666677777777777653 233444433211 11222233555555555544443
No 405
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=42.14 E-value=48 Score=35.15 Aligned_cols=35 Identities=9% Similarity=0.325 Sum_probs=18.7
Q ss_pred hhhHHHHHHHhhccCCCCCcE-EEE-eccccccCccc
Q 043955 766 GHSERLAIAYGVLKSTEGSLI-RIT-KNLRVCVDCHS 800 (835)
Q Consensus 766 ~hse~la~~~~~~~~~~~~~~-~~~-knlr~c~dch~ 800 (835)
+-.+.-=+..|+++...|.-+ .+. .+|-+=.+|-+
T Consensus 377 ~p~qqylltlGF~nke~gk~lek~~~r~lp~Ft~hk~ 413 (569)
T PF15015_consen 377 FPPQQYLLTLGFKNKEDGKFLEKLPSRKLPTFTEHKT 413 (569)
T ss_pred CCHHHHHHHhcccccccchHHHhcccccCCcccccCC
Confidence 334566667777777776432 111 44555555543
No 406
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=42.00 E-value=9.4 Score=27.55 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.4
Q ss_pred cccccCccchh
Q 043955 792 LRVCVDCHSFC 802 (835)
Q Consensus 792 lr~c~dch~~~ 802 (835)
.-||+|||+--
T Consensus 20 iYiCgdC~~en 30 (62)
T KOG3507|consen 20 IYICGDCGQEN 30 (62)
T ss_pred EEEeccccccc
Confidence 35899999754
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.83 E-value=83 Score=30.10 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 626 QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 626 ~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
...|++.++..+..+....|+.++|+...+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3456677777777777777777777777777777776
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.66 E-value=1.9e+02 Score=23.58 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC--CCchHHHHHHHHhcCCch-HHHHHHHHHH
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN--PGNYVLISNVFAASRKWK-DVEQVRMRMR 692 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~-~a~~~~~~m~ 692 (835)
....-.|...+...|+.+.|...+-.+++-+|+. ...-..|-.++...|.-+ -+.+.|++|-
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3445555566667777777777777777776643 555566666777776643 4566666553
No 409
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=41.38 E-value=6.8e+02 Score=29.77 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHhhhcCCCCCCh---hHHHHHHHHH-----hhcCCHHHHHHHHHhC---CCCCCH
Q 043955 587 EIMRCDYQLDPWP---EHYACLVDLL-----GRANHLEEAYQFVRSM---QIEPTA 631 (835)
Q Consensus 587 ~~m~~~~~i~p~~---~~y~~lv~~l-----~r~g~~~eA~~~~~~m---~~~p~~ 631 (835)
..+...++..|.. .++..+.+++ .+.|++++|++.++.. |..|+.
T Consensus 687 ~~~y~~~~~~~~~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP~~~~~ 742 (835)
T KOG2168|consen 687 NDIYESNKGDSAKVVVKTLSLLLDLVSFFDLYHNGEWEEALSILEHLDLIPLDPLS 742 (835)
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCChhh
Confidence 3344445555554 3444444443 4689999999999887 665543
No 410
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.34 E-value=4e+02 Score=26.76 Aligned_cols=227 Identities=13% Similarity=0.127 Sum_probs=125.9
Q ss_pred CChhHHHHHHhcCCC--C-----CcccHHHHHHHHHcCCChhHHHHHHHHHHH---CCCC--CCcchHHHHHHHHhccCC
Q 043955 209 GKMTEAAGVLYQLEN--K-----DSVSWNSMLTGFVQNDLYCKAMQFFRELQG---AGQK--PDQVCTVNAVSASGRLGN 276 (835)
Q Consensus 209 g~~~~A~~~f~~~~~--~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~--p~~~t~~~ll~a~~~~~~ 276 (835)
..+++|..-|+...+ + .....-.||..+.+.+++++.++.|.+|.. ..+. -+..+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666665543 1 122344577888888888888888888753 1222 233467777777776677
Q ss_pred hHhHHHHHHHHHHhC-CCccc----cccchhhhhhhccCChhHHHHHHHhcCCC--------C-------cccHHHHHHH
Q 043955 277 LLNGKELHAYAIKQG-FVSDL----QIGNTLMDMYAKCCCVNYMGRVFYQMTAQ--------D-------FISWTTIIAG 336 (835)
Q Consensus 277 ~~~a~~i~~~~~~~g-~~~~~----~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--------~-------~~~~~~li~~ 336 (835)
.+.-..+++.-++.= -..+. .+-+.|-..|...+.+....++++++.+. | ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 666666665544320 01111 23455677777777777777777766421 1 2345556677
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhccc-----cCchHHHHHHHHHHH----hCCCchh---HHHHHH
Q 043955 337 YAQNNCHLKALELFRTVQLEG-LDADVMIIGSVLMACSGL-----KCMSQTKEIHGYIIR----KGLSDLV---ILNAIV 403 (835)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~-----~~~~~~~~i~~~~~~----~~~~~~~---~~~~li 403 (835)
|....+-..-..+|++..... .-|.+ ....+++-|+.. |.++.|..-+=.+.+ .|.+... -|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 777777777777777665433 22333 334556666543 444444322222222 3433211 456677
Q ss_pred HHHHhcCChhhHHHHHHhcC------CCCchhHHHHHHHHHhCC
Q 043955 404 DVYGKCGNIDYSRNVFESIE------SKDVVSWTSMISSYVHNG 441 (835)
Q Consensus 404 ~~y~k~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g 441 (835)
+|+.++|--. |+.-. +|.+.+.+.|+.+|..+.
T Consensus 280 NMLmkS~iNP-----FDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd 318 (440)
T KOG1464|consen 280 NMLMKSGINP-----FDSQEAKPYKNDPEILAMTNLVAAYQNND 318 (440)
T ss_pred HHHHHcCCCC-----CcccccCCCCCCHHHHHHHHHHHHHhccc
Confidence 7777766311 21111 245566777777776553
No 411
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=40.05 E-value=75 Score=25.17 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=35.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHH
Q 043955 540 LHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFL 586 (835)
Q Consensus 540 ~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~ 586 (835)
...+.++|+..++..++.-..|.. .++..+..|++..|.+++.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999888875444333 46778888999999998888764
No 412
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.75 E-value=3.3e+02 Score=29.21 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCC-----C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQT-----K-DLILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
...-|.+-|..||+++.|.+.|.+... + -+..|-.+|..-.-.|++...+..-.+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 356788999999999999999988552 1 233566666666666777777766666654
No 413
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.65 E-value=4.6e+02 Score=27.29 Aligned_cols=108 Identities=8% Similarity=0.033 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHH
Q 043955 478 LKKGKELNGFIIRKGF----NLEGSVASSLVDMYARCGALDIANKVFNCVQT-KDLILWTSMINANGLHGRGKVAIDLFY 552 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~----~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~Al~l~~ 552 (835)
.+.+.+.+......+. ..++.....+.....+.|..++-..+++.... ++..-...++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4555555555554311 34555556666666677776665555555543 355566777777777777777677777
Q ss_pred HHHHCC-CCCCHHHHHHHHHHhc--ccCcHHHHHHHHH
Q 043955 553 KMEAES-FAPDHITFLALLYACS--HSGLINEGKKFLE 587 (835)
Q Consensus 553 ~m~~~g-~~Pd~~t~~~ll~a~~--~~g~~~~a~~~~~ 587 (835)
.....+ +++..+.+ ++.++. +.--.+.+++++.
T Consensus 226 ~~l~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRY--VLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTHHH--HHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHHHH--HHHHHhcCChhhHHHHHHHHH
Confidence 766643 55555332 222332 2222355555544
No 414
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=39.02 E-value=1.5e+02 Score=26.42 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=34.6
Q ss_pred CCChhHHHHHHHHHhhcCCHHH---HHHHHHhC-C-CCCCH--HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 596 DPWPEHYACLVDLLGRANHLEE---AYQFVRSM-Q-IEPTA--EVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 596 ~p~~~~y~~lv~~l~r~g~~~e---A~~~~~~m-~-~~p~~--~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.|+.++--.+..+|.++.+.++ -+.++++. + -.|+. ...--|.-+|...|+.+.+.+..+.+++.+|+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 4444444455556666554433 33444443 2 12211 111223345666677777777777777777654
No 415
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=39.01 E-value=3.4e+02 Score=28.32 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=79.8
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc------ccCcHHHHHHHHHHhhhcCCCCCC
Q 043955 525 TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACS------HSGLINEGKKFLEIMRCDYQLDPW 598 (835)
Q Consensus 525 ~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~------~~g~~~~a~~~~~~m~~~~~i~p~ 598 (835)
+.|...|+- +..++++.++++....+. |.....-..+.+|- ..-+|..-..+|+.+. .+.|+
T Consensus 261 dQDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apS 328 (415)
T COG4941 261 DQDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPS 328 (415)
T ss_pred ccchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCC
Confidence 346666753 345788888888888764 88888777777663 1234666667777665 44554
Q ss_pred hh-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 599 PE-HYACLVDLLGRANHLEEAYQFVRSMQIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 599 ~~-~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
+. ..|--| +++..--.+-++..++...-+|. ...|..-.+.+...|..+.|..+|++++++.++.+
T Consensus 329 PvV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 329 PVVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred CeEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 32 222222 22322334455566665533321 22455556778889999999999999999988753
No 416
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=38.75 E-value=59 Score=22.46 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=17.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 043955 333 IIAGYAQNNCHLKALELFRTVQLEG 357 (835)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g 357 (835)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777776543
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.74 E-value=98 Score=29.60 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=18.9
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 594 QLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 594 ~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
...|++..|..++.++...|+.+||.+...++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556666666666666666666666555555
No 418
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=37.28 E-value=59 Score=22.47 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=13.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 043955 131 IISAYSASGQCLEALGLFREMQRV 154 (835)
Q Consensus 131 li~~~~~~g~~~~A~~l~~~m~~~ 154 (835)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555665555555543
No 419
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=36.75 E-value=16 Score=23.00 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=8.4
Q ss_pred HHHHHHhhcc
Q 043955 770 RLAIAYGVLK 779 (835)
Q Consensus 770 ~la~~~~~~~ 779 (835)
-||.|||+|+
T Consensus 11 lLAcAFgiin 20 (37)
T COG4890 11 LLACAFGIIN 20 (37)
T ss_pred HHHHHHHHHH
Confidence 4899999986
No 420
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.71 E-value=25 Score=27.88 Aligned_cols=19 Identities=11% Similarity=0.492 Sum_probs=15.5
Q ss_pred HHhcCCchHHHHHHHHHHc
Q 043955 675 FAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 675 y~~~g~~~~a~~~~~~m~~ 693 (835)
+...-.|++|.+++.+|+.
T Consensus 49 ~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 49 AGVGSQWERARRLQQKMKT 67 (79)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 4455689999999999985
No 421
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=36.52 E-value=7.4e+02 Score=28.80 Aligned_cols=23 Identities=9% Similarity=0.370 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHHH
Q 043955 670 LISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
++.+.|...|+-++|...+....
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 44456777788888877776544
No 422
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=36.49 E-value=6.4e+02 Score=28.06 Aligned_cols=173 Identities=15% Similarity=0.124 Sum_probs=106.3
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhh
Q 043955 226 SVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDM 305 (835)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 305 (835)
-...-+++..+.++-.+.-...+-.+|..-| -+...|..++..+... .-+.--.+++.+++..+. |+....-|.+.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3345566777777777777777777777643 4556677777777766 445556677766666543 33444455555
Q ss_pred hhccCChhHHHHHHHhcCCCCc---------ccHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHhccc
Q 043955 306 YAKCCCVNYMGRVFYQMTAQDF---------ISWTTIIAGYAQNNCHLKALELFRTVQLE-GLDADVMIIGSVLMACSGL 375 (835)
Q Consensus 306 y~~~g~~~~A~~~f~~m~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~ 375 (835)
|-+ ++...+...|.+...+=+ ..|..++.-- ..+.+..+.+..+.+.. |...-.+.+--+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 555 667777777766543211 2466555311 24455566666655443 4444555566666778888
Q ss_pred cCchHHHHHHHHHHHhCCCchhHHHHHHHH
Q 043955 376 KCMSQTKEIHGYIIRKGLSDLVILNAIVDV 405 (835)
Q Consensus 376 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~ 405 (835)
.++.++..+.+.++++.-.+......++..
T Consensus 219 eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred cCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 888999999888888776665555554443
No 423
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.47 E-value=2.1e+02 Score=25.51 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHhcccC---cHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 043955 560 APDHITFLALLYACSHSG---LINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA 631 (835)
Q Consensus 560 ~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~ 631 (835)
.|...|-..+..++.++. ++.+|+.+|+...+ .-.|+ .+-.--+.-.+.|.|++++|..+++.. ..+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 555556556667776665 46788889988875 12332 333334566778999999999999877 566654
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.45 E-value=2.7e+02 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 043955 227 VSWNSMLTGFVQNDLYCKAMQFFRELQG 254 (835)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (835)
.-|..++.-|-..|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4589999999999999999999999877
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.84 E-value=56 Score=33.35 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=35.2
Q ss_pred CCeee-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 043955 123 EDVVL-WNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAAL 167 (835)
Q Consensus 123 ~~~~~-~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 167 (835)
||..+ ||..|....+.||+++|+.++++..+.|+.--..||...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 44444 5789999999999999999999999998876666664443
No 426
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=35.75 E-value=2.8e+02 Score=29.71 Aligned_cols=29 Identities=7% Similarity=-0.271 Sum_probs=18.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 043955 537 ANGLHGRGKVAIDLFYKMEAESFAPDHIT 565 (835)
Q Consensus 537 ~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t 565 (835)
.+...+++..|.++|+++......|+..+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 34466777777777777777655444433
No 427
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=35.38 E-value=19 Score=30.02 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=20.0
Q ss_pred eccccccCc-cchhhhhhhhhCceEEeecCCc
Q 043955 790 KNLRVCVDC-HSFCKLVSRLFGRELVVRDANR 820 (835)
Q Consensus 790 knlr~c~dc-h~~~k~~s~~~~r~i~~rd~~r 820 (835)
-++-||.+| |.|.+--.....-..++||+|-
T Consensus 17 g~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG 48 (109)
T TIGR00686 17 GTQLICPSCLYEWNENEVNDDDDELIVKDCNG 48 (109)
T ss_pred CCeeECccccccccccccccccCCceEEcCCC
Confidence 467899999 7777653222222257899873
No 428
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.97 E-value=1.6e+02 Score=29.06 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=55.3
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCCHHHHHH--------HHHHH---hhcCchhHHHHHHHHHHhcCCCCC
Q 043955 606 VDLLGRANHLEEAYQFVRSM---------QIEPTAEVWCA--------LLGAC---RVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m---------~~~p~~~~~~~--------ll~a~---~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
++-|.+.|++.||..-+..+ .-+|...-|-- ||+-| .+-|++=.+++-...++..+|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 44555666666666554432 22444444422 23333 344777777788888999999999
Q ss_pred CchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 666 GNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 666 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.+|..-+...+.+-+-++|..-....-
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 999988888877766666665554443
No 429
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.53 E-value=2.7e+02 Score=28.75 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=80.1
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCC--hhHHH--HHHHHHHhcCChHHH
Q 043955 472 ASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKD--LILWT--SMINANGLHGRGKVA 547 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~--~~~~~--~li~~~~~~g~~~~A 547 (835)
--......+|..++....+.|- .. |-+......--...+.+.++| +.+|- -+..+-.+.|+..+|
T Consensus 226 EEEa~Ti~~AE~l~k~ALka~e----~~-------yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA 294 (556)
T KOG3807|consen 226 EEEATTIVDAERLFKQALKAGE----TI-------YRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREA 294 (556)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH----HH-------HhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHH
Confidence 3344556777777777777541 11 111111111111222333443 33332 233444567899999
Q ss_pred HHHHHHHHHCCCCCCHHH----HHHHHHHhcccCcHHHHHHHHHHhhhcCCC-CCChhHHHHHHHHHhhcCCHHHHHHHH
Q 043955 548 IDLFYKMEAESFAPDHIT----FLALLYACSHSGLINEGKKFLEIMRCDYQL-DPWPEHYACLVDLLGRANHLEEAYQFV 622 (835)
Q Consensus 548 l~l~~~m~~~g~~Pd~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i-~p~~~~y~~lv~~l~r~g~~~eA~~~~ 622 (835)
.+.|+.+.++ .| -.| -..++.+|....-+.+...++-.-- .| .|... --|.-.+|.+ |..+-
T Consensus 295 ~K~~RDL~ke--~p-l~t~lniheNLiEalLE~QAYADvqavLakYD---dislPkSA-~icYTaALLK------~RAVa 361 (556)
T KOG3807|consen 295 VKIMRDLMKE--FP-LLTMLNIHENLLEALLELQAYADVQAVLAKYD---DISLPKSA-AICYTAALLK------TRAVS 361 (556)
T ss_pred HHHHHHHhhh--cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCcchH-HHHHHHHHHH------HHHHH
Confidence 9999888764 34 222 2245556554443333333332111 12 12211 1111122221 22222
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 623 RSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 623 ~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
+ .+.||..+-+-|-.|- -.|.++..++.|.+|.-|.+..-+
T Consensus 362 ~--kFspd~asrRGLS~AE------~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 362 E--KFSPETASRRGLSTAE------INAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred h--hcCchhhhhccccHHH------HHHHHHHHHHhhcCCCCcHHHHHH
Confidence 2 2467766554444442 246778888999999877665433
No 430
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.50 E-value=6.7e+02 Score=27.41 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 043955 529 ILWTSMINANGL---HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG 577 (835)
Q Consensus 529 ~~~~~li~~~~~---~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 577 (835)
..+..+++++.+ .++.+.|+..+.+|.+.|..|..+.-..+..|+..-|
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 345556666655 3689999999999999998888776555555544444
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.43 E-value=1.3e+02 Score=21.15 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=20.1
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043955 136 SASGQCLEALGLFREMQRVGLVTNAYTFVAALQ 168 (835)
Q Consensus 136 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 168 (835)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666666666666666655555543
No 432
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.96 E-value=5.8e+02 Score=26.50 Aligned_cols=163 Identities=14% Similarity=0.113 Sum_probs=89.4
Q ss_pred hhhHHHHhhhC--CCCChhHHHHHHHHHHhcC---C-hHHHH---------HHHHHH-HHCCCCCC------HHHHHH--
Q 043955 513 LDIANKVFNCV--QTKDLILWTSMINANGLHG---R-GKVAI---------DLFYKM-EAESFAPD------HITFLA-- 568 (835)
Q Consensus 513 ~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g---~-~~~Al---------~l~~~m-~~~g~~Pd------~~t~~~-- 568 (835)
++.+.++...+ .+++...|..++..+..-. . .++.. +++..+ .+-|..|+ ...+..
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~ 135 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALL 135 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHH
Confidence 45566666666 3567777777665543222 1 11111 122222 22355554 122222
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCC---CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQ---LDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHS 645 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~---i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~ 645 (835)
+-.+|.+.+-.+++.+.|+.....-. ...+++....+.....+.|.-++-..+++...-.+++..-..++.+.....
T Consensus 136 ~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~ 215 (324)
T PF11838_consen 136 LSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSP 215 (324)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S
T ss_pred HHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccC
Confidence 23345445557889999988775311 133566667777777888887665556555555667778888898888888
Q ss_pred chhHHHHHHHHHHhcC-CCCCCchHHHHHHH
Q 043955 646 NKELGEIVAKKLLELD-PGNPGNYVLISNVF 675 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~-p~~~~~~~~l~~~y 675 (835)
+.+.-.++.+.++.-+ -.....+..+..++
T Consensus 216 d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 216 DPELLKRLLDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp -HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCcccccHHHHHHHHHHh
Confidence 9999999999998843 12223445555554
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.94 E-value=71 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhh
Q 043955 562 DHITFLALLYACSHSGLINEGKKFLEIMR 590 (835)
Q Consensus 562 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (835)
|..--..++.++...|.+++|.+|.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444455666666666666666665554
No 434
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.07 E-value=72 Score=32.35 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=54.8
Q ss_pred HhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCC
Q 043955 641 CRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKS 720 (835)
Q Consensus 641 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~ 720 (835)
.+..|+.|.|...++.++.+.|+++....-++.......+.-+|....- +.+.-.||.|- ..+-.++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~----~ALtisP~nse--------ALvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV----KALTISPGNSE--------ALVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh----eeeeeCCCchH--------HHhhhhcc
Confidence 5678999999999999999999999998888877766666656655543 33444577653 23344566
Q ss_pred CcCcHHHHH
Q 043955 721 HSESDEIYK 729 (835)
Q Consensus 721 hp~~~~i~~ 729 (835)
-|...+|-.
T Consensus 194 ~plV~~iD~ 202 (472)
T KOG3824|consen 194 TPLVSAIDR 202 (472)
T ss_pred chHHHHHHH
Confidence 676666644
No 435
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=32.01 E-value=8.7e+02 Score=28.24 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=18.5
Q ss_pred ChhHHHHHHH-----HHHhcCChHHHHHHHHHHHH
Q 043955 527 DLILWTSMIN-----ANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 527 ~~~~~~~li~-----~~~~~g~~~~Al~l~~~m~~ 556 (835)
....|..+.. .|...|+.++|.....+...
T Consensus 571 ~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 571 SDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4456744433 35566888888877776543
No 436
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.92 E-value=3.6e+02 Score=27.34 Aligned_cols=132 Identities=11% Similarity=0.113 Sum_probs=70.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhH-------HHHHHHHhccccCchHHHHHHHHHHHh----CCCch-hHHHH
Q 043955 334 IAGYAQNNCHLKALELFRTVQLEGLDADVMI-------IGSVLMACSGLKCMSQTKEIHGYIIRK----GLSDL-VILNA 401 (835)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~~~~~~~~~~~i~~~~~~~----~~~~~-~~~~~ 401 (835)
.+..++.+++++|+..+.+....|+..|..| ...+...+...|+...-.+........ .-+.. -+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445667788888888888888887766544 334445555555554433332222111 11111 24555
Q ss_pred HHHHHHhcC-ChhhHHHHHHhcCC---C------CchhHHHHHHHHHhCCChHHHHHHHHHH----hhcCCcCChhhh
Q 043955 402 IVDVYGKCG-NIDYSRNVFESIES---K------DVVSWTSMISSYVHNGLANEALELFYLM----NEANVESDSITL 465 (835)
Q Consensus 402 li~~y~k~g-~~~~A~~~f~~~~~---~------~~~~~~~li~~~~~~g~~~~Al~lf~~m----~~~g~~p~~~t~ 465 (835)
|++++.... .+++-.++.....+ + -...-.-+|..+.+.|.+.+|+.+...+ .+-.-+|+-+|.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 555554332 24444444433321 0 0111235788899999999999865544 343445665554
No 437
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=31.89 E-value=5.8e+02 Score=26.16 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=28.5
Q ss_pred cCChhhhHhHHHHhhcccchhhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChhhHHHHh
Q 043955 459 ESDSITLVSALSAASSLSILKKGKELNGFIIRK-GFNLEGSVASSLVDMYARCGALDIANKVF 520 (835)
Q Consensus 459 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f 520 (835)
.++..+..++|...+..+++..-.+++...... +...|...|..+|+.-.+.|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 444444555555555555555554444444433 34444444444444444444444333333
No 438
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.76 E-value=5.2e+02 Score=25.59 Aligned_cols=98 Identities=14% Similarity=0.269 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ChhHHHHHH---HHHhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HH--HHHhhc-
Q 043955 578 LINEGKKFLEIMRCDYQLDP-WPEHYACLV---DLLGRANHLEEAYQFVRSM---QIEPTAEVWCA---LL--GACRVH- 644 (835)
Q Consensus 578 ~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv---~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~---ll--~a~~~~- 644 (835)
+.+.|+.+|+..-.-|..+- +...--|++ +.-+..|++.+|.+.+++. .+..+..-|+. ++ +.|...
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 44555555555443332222 333334444 3445678899999998876 33333333432 44 446665
Q ss_pred CchhHHHHHHHHHHhcCCCCCCc--hHHHHHHH
Q 043955 645 SNKELGEIVAKKLLELDPGNPGN--YVLISNVF 675 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~--~~~l~~~y 675 (835)
.|.--+.++.++-.+++|.-+++ +-+|..+.
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 78888899999999999975554 34444443
No 439
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.63 E-value=7.1e+02 Score=27.13 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043955 501 SSLVDMYARCGALDIANKVFNCVQTK---DLILWTSMINANGLHGRGKVAIDLFYKMEAES 558 (835)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g 558 (835)
..|+.-|.-.|.+.+|.+...++--| ..+.+.+++.+.-+.|+-..-+.++++.-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34677788899999999999887755 55678888888877777766666666655544
No 440
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=31.39 E-value=1.1e+02 Score=31.08 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=29.3
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHh
Q 043955 401 AIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMN 454 (835)
Q Consensus 401 ~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~ 454 (835)
.....|.++|.+.+|..+-+.... -+...|-.++..++..|+--.|.+-+.+|.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455555555555555554443 234455566666666666555555555553
No 441
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=31.08 E-value=17 Score=20.07 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=6.2
Q ss_pred Cccchhhhhh
Q 043955 797 DCHSFCKLVS 806 (835)
Q Consensus 797 dch~~~k~~s 806 (835)
.-|.++|+||
T Consensus 11 glhe~ikli~ 20 (23)
T PF08225_consen 11 GLHEVIKLIN 20 (23)
T ss_pred HHHHHHHHHh
Confidence 3466677666
No 442
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.00 E-value=1.1e+02 Score=30.80 Aligned_cols=52 Identities=21% Similarity=0.137 Sum_probs=45.6
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHH
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
+++...++.+.|..+.++++.++|+++....--+-+|++.|-..-|.+-...
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 5677788999999999999999999998888889999999998888777654
No 443
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=30.95 E-value=14 Score=30.23 Aligned_cols=11 Identities=55% Similarity=1.398 Sum_probs=9.0
Q ss_pred ccCcccCCCCC
Q 043955 824 FEAGVCSCGDY 834 (835)
Q Consensus 824 f~~g~csc~d~ 834 (835)
-..|.|||.||
T Consensus 47 l~~gfCSCp~~ 57 (117)
T COG5431 47 LEGGFCSCPDF 57 (117)
T ss_pred EEcCcccCHHH
Confidence 36789999887
No 444
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.73 E-value=61 Score=28.63 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=24.4
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 043955 137 ASGQCLEALGLFREMQRVGLVTNAYTFVAALQAC 170 (835)
Q Consensus 137 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 170 (835)
..|.-..|..+|++|+..|-+||. ++.||..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346677899999999999999985 45565543
No 445
>PF14376 Haem_bd: Haem-binding domain
Probab=30.68 E-value=18 Score=32.42 Aligned_cols=10 Identities=50% Similarity=0.963 Sum_probs=7.7
Q ss_pred cccccCccch
Q 043955 792 LRVCVDCHSF 801 (835)
Q Consensus 792 lr~c~dch~~ 801 (835)
-+-|.|||+-
T Consensus 41 ~~~CydCHSn 50 (137)
T PF14376_consen 41 KNSCYDCHSN 50 (137)
T ss_pred HccccccCCC
Confidence 3579999973
No 446
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=30.49 E-value=21 Score=26.97 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=15.9
Q ss_pred ceEEeecCCccccccCcccC
Q 043955 811 RELVVRDANRFHHFEAGVCS 830 (835)
Q Consensus 811 r~i~~rd~~rfh~f~~g~cs 830 (835)
..|=+.|.+-.|+||||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45778899999999999854
No 447
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.20 E-value=3e+02 Score=27.14 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFA-PDH 563 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-Pd~ 563 (835)
|.+.++.||- ....|+++.|+++.+-+++.|.. |+.
T Consensus 83 d~Vl~~~mvW-~~D~Gd~~~AL~ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 83 DDVLMTVMVW-RFDIGDFDGALEIAEYALEHGLTMPDQ 119 (230)
T ss_pred CCeeeEeeee-eeeccCHHHHHHHHHHHHHcCCCCCcc
Confidence 4443334443 23679999999999999988754 554
No 448
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.09 E-value=3.8e+02 Score=25.76 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAE 557 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 557 (835)
+...+.++..+...|+++.|-+.|.-++..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 456777888888889999998888888874
No 449
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=29.88 E-value=8.7 Score=29.74 Aligned_cols=14 Identities=43% Similarity=0.755 Sum_probs=11.1
Q ss_pred eccccccCccchhh
Q 043955 790 KNLRVCVDCHSFCK 803 (835)
Q Consensus 790 knlr~c~dch~~~k 803 (835)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 45699999998754
No 450
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.75 E-value=7.1e+02 Score=27.52 Aligned_cols=103 Identities=21% Similarity=0.183 Sum_probs=62.5
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCc------ee-EEEECC--EEE
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPG------SS-WIEIGN--KIH 712 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g------~s-~i~~~~--~~~ 712 (835)
....++..+.+-.+.+.-..-+.+.+..+-|+.+...|++..|.+... ..++.++|| +| -|-.+| -||
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccCccccchhhhheeecCcceEe
Confidence 445667777777777777777777888888999999999999987653 345666666 33 233232 243
Q ss_pred EEEeCCCCCcC-cHHHHHHHHHHHHHhHHhCCcccCCcccc
Q 043955 713 SFIARDKSHSE-SDEIYKKLAEITEKLEREGGYVAQTQFVL 752 (835)
Q Consensus 713 ~f~~~d~~hp~-~~~i~~~l~~l~~~~~~~~~y~~~~~~~~ 752 (835)
.- .| .|-. +.-....|...-..+ + .|+.|.+.+.+
T Consensus 294 ~~-~~--~y~~~~~~F~kAL~N~c~qL-~-~g~~~~~~~tl 329 (696)
T KOG2471|consen 294 YQ-LG--CYQASSVLFLKALRNSCSQL-R-NGLKPAKTFTL 329 (696)
T ss_pred ee-hh--hHHHHHHHHHHHHHHHHHHH-h-ccCCCCcceeh
Confidence 32 22 1221 222333444444555 3 47888776654
No 451
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.68 E-value=2.9e+02 Score=26.10 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=24.7
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
....|-..|.+++|+++++++++ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34679999999999999999998 8876444
No 452
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.57 E-value=2.2e+02 Score=24.95 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHh
Q 043955 346 ALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRK 391 (835)
Q Consensus 346 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 391 (835)
..+-+..+..-.+.|++...-..|.||-+.+++..+..+++.+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344455556678999999999999999999999999998877653
No 453
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.19 E-value=8.3e+02 Score=27.16 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHh-CCCCCcchHHHHHHHHHhcCChHHHHHHHhhc
Q 043955 41 RVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKC-GYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM 119 (835)
Q Consensus 41 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 119 (835)
....+|++...+ ++-|...+..-+.-|.+.+.+.....++..|+.. +..|+..++.+.= -|-...+++.|+.+|.+-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHH
Confidence 445555555443 4558888888888888888888899999888764 4556665555432 233444588888888764
No 454
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=28.77 E-value=1.1e+02 Score=27.46 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 616 EEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 616 ~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
++|.++++-|+- +|. .-.........|+...|..+.+.++..+|+|..+-.+.+++|.+.|.-.+..-.|.
T Consensus 58 ~~A~~~v~l~GG-~d~--vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~Rn 128 (141)
T PF14863_consen 58 EEAKRYVELAGG-ADK--VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANWRN 128 (141)
T ss_dssp HHHHHHHHHTTC-HHH--HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHHHH
T ss_pred HHHHHHHHHcCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 456666666631 111 11222334567999999999999999999999999999998887776555444443
No 455
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=28.63 E-value=9.1e+02 Score=27.43 Aligned_cols=404 Identities=10% Similarity=0.004 Sum_probs=198.8
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccH-HHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 043955 22 TVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTF-PCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLV 100 (835)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 100 (835)
+-..|+.+|..--.....+.+...++.+... -|-.+.| .....-=.+.|..+.+.++|+.-+. |++.++..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4457888886655555556666677776643 3443322 2222222467788888899887765 4556666776666
Q ss_pred HHHH-hcCChHHHHHHHhhc----CC-CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc--
Q 043955 101 AMYA-KCYDFRKARQLFDRM----GE-KEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACED-- 172 (835)
Q Consensus 101 ~~y~-~~g~~~~A~~~f~~m----~~-~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 172 (835)
.... ..|+.+..++.|+.. +. -.....|-..|.--..++++.....+|++.++....-=..-|.....-...
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 5444 457888888888876 11 145667999998888899999999999999874211111111111111111
Q ss_pred ---CCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-ChhHHHHHHhcCCCCCcc---cH-------HHHHHHHHc
Q 043955 173 ---SSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCG-KMTEAAGVLYQLENKDSV---SW-------NSMLTGFVQ 238 (835)
Q Consensus 173 ---~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~~~~~d~~---~~-------~~li~~~~~ 238 (835)
....+...++-........ -...+ ..+.-....+....|... .- +..-..+-.
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~-------------~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~ 267 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSK-------------ITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQK 267 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhh-------------cccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1111111111111111000 00000 011111111111111000 00 000011111
Q ss_pred CCChhHHHHHHHHHHHC---CCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHH
Q 043955 239 NDLYCKAMQFFRELQGA---GQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYM 315 (835)
Q Consensus 239 ~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 315 (835)
+....+....|++-... .++|.. .++..+|..-++.-.+.|+.+.+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~-------------------------------~aql~nw~~yLdf~i~~g~~~~~ 316 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLD-------------------------------QAQLKNWRYYLDFEITLGDFSRV 316 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCccc-------------------------------HHHHHHHHHHhhhhhhcccHHHH
Confidence 11111112222211111 011110 12234455555555666677777
Q ss_pred HHHHHhcCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhC
Q 043955 316 GRVFYQMTAQ---DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKG 392 (835)
Q Consensus 316 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~ 392 (835)
.-+|++...+ =...|--.+.-....|+.+-|-.++..-.+--++-.+.+-..--.-+...|+...|+.+++.+...-
T Consensus 317 ~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 317 FILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 6666665543 2234555555555557777777666655544333333332222233555678888888888887776
Q ss_pred CCchhHHHHHHHHHHhcCChhhHH---HHHHhcCC--CCchhHHHHHHHHH-----hCCChHHHHHHHHHHhhcCCcCCh
Q 043955 393 LSDLVILNAIVDVYGKCGNIDYSR---NVFESIES--KDVVSWTSMISSYV-----HNGLANEALELFYLMNEANVESDS 462 (835)
Q Consensus 393 ~~~~~~~~~li~~y~k~g~~~~A~---~~f~~~~~--~~~~~~~~li~~~~-----~~g~~~~Al~lf~~m~~~g~~p~~ 462 (835)
+.-..+-.--+.+--+.|..+.+. .+.....+ .+.-..+.+..-++ -.++.+.|..++.+|... +.++.
T Consensus 397 pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k 475 (577)
T KOG1258|consen 397 PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCK 475 (577)
T ss_pred CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccH
Confidence 322335555667777778877777 33333321 23333333333222 356778888888888763 33344
Q ss_pred hhhHhHHHHhh
Q 043955 463 ITLVSALSAAS 473 (835)
Q Consensus 463 ~t~~~ll~a~~ 473 (835)
.-|..++.-+.
T Consensus 476 ~~~~~~~~~~~ 486 (577)
T KOG1258|consen 476 VLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 456
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.57 E-value=9.4e+02 Score=27.56 Aligned_cols=21 Identities=10% Similarity=-0.028 Sum_probs=10.9
Q ss_pred CchHHHHHHHHHHHhCCCchh
Q 043955 377 CMSQTKEIHGYIIRKGLSDLV 397 (835)
Q Consensus 377 ~~~~~~~i~~~~~~~~~~~~~ 397 (835)
+.+.+..++....+.|.++..
T Consensus 308 d~~~A~~~~~~aA~~g~~~a~ 328 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDAQ 328 (552)
T ss_pred cHHHHHHHHHHHHhcCCchHH
Confidence 344455555555555555443
No 457
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=28.55 E-value=98 Score=31.66 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALL 570 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll 570 (835)
-||..|..-.+.|+.++|+.|.++....|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46789999999999999999999999999887777776554
No 458
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=28.38 E-value=2.7e+02 Score=32.00 Aligned_cols=145 Identities=10% Similarity=-0.029 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCC
Q 043955 213 EAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGF 292 (835)
Q Consensus 213 ~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 292 (835)
....++.+.+-++...-.-++..|.+.|..+.|.++.+.+-..-+ ...-|...+..+.+.++......+-..+.+...
T Consensus 392 ~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~ 469 (566)
T PF07575_consen 392 RIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYC 469 (566)
T ss_dssp HHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 334444555544544555666777777777777777666543211 122355666666666666555555444443322
Q ss_pred CccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 043955 293 VSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIA---GYAQNNCHLKALELFRTVQLEGLDADVMIIGSVL 369 (835)
Q Consensus 293 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 369 (835)
..+......+++...... +.. +..++-+-.. -..+.|+..+|.+.+-.+......|..+-...+.
T Consensus 470 ~~~~~~~~~ll~~i~~~~-----------~~~-~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 470 NNGEPLDDDLLDNIGSPM-----------LLS-QRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCcccHHHHHHhcchh-----------hhh-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 222111111111111100 000 0011111111 1134477888888888888888888776666555
Q ss_pred HH
Q 043955 370 MA 371 (835)
Q Consensus 370 ~a 371 (835)
.+
T Consensus 538 d~ 539 (566)
T PF07575_consen 538 DA 539 (566)
T ss_dssp --
T ss_pred HH
Confidence 54
No 459
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=28.36 E-value=3.3e+02 Score=23.11 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=14.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHh
Q 043955 432 SMISSYVHNGLANEALELFYLMN 454 (835)
Q Consensus 432 ~li~~~~~~g~~~~Al~lf~~m~ 454 (835)
.++.-|...++.++|...+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555666666666666666654
No 460
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.14 E-value=1.3e+03 Score=28.88 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=31.0
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCC-CC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLD-PW-PEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~-p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
|..++.-+-..+..|++.++-....+..+.+ |. .-.++++.+-....|.+-+|++.+-+-
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n 1047 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN 1047 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC
Confidence 3444445555555555555544444332211 22 345666666666666666666666554
No 461
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.88 E-value=1.5e+02 Score=25.14 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=11.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q 043955 432 SMISSYVHNGLANEALELFYLM 453 (835)
Q Consensus 432 ~li~~~~~~g~~~~Al~lf~~m 453 (835)
.++..|..+|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666665554
No 462
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=27.77 E-value=41 Score=29.83 Aligned_cols=42 Identities=38% Similarity=0.594 Sum_probs=31.4
Q ss_pred HhCCcccCCcccccccchhHHHhhhhhhhHHHHHHHhhccCCCCCcEEEEeccccccCccchhhhhhhhhCc
Q 043955 740 REGGYVAQTQFVLHNVEEEEKVQMLYGHSERLAIAYGVLKSTEGSLIRITKNLRVCVDCHSFCKLVSRLFGR 811 (835)
Q Consensus 740 ~~~~y~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r 811 (835)
.+.-|+.......|.++. .+|+||--.|--||+.- +|+.+|-
T Consensus 62 ~e~nYvnQPP~IPHsi~~----------------------------Yqvtkn~N~CLsCH~~e--~s~~tGA 103 (155)
T COG3043 62 MELNYVNQPPMIPHSIEG----------------------------YQVTKNTNRCLSCHSVE--NSRTTGA 103 (155)
T ss_pred hhhccCCCCCCCcccccC----------------------------ceeecccchhhhccCHH--HHhhcCC
Confidence 456788888888888753 58999999999999753 4544443
No 463
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.71 E-value=2.8e+02 Score=22.56 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=25.0
Q ss_pred hcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHH
Q 043955 509 RCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVA 547 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 547 (835)
+.|+.+.|+++.+.++ +.+-.+...+.++...|+..-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466677777777776 6666677777777666665544
No 464
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.54 E-value=2.9e+02 Score=26.27 Aligned_cols=51 Identities=12% Similarity=0.002 Sum_probs=29.7
Q ss_pred HHhcCChhhHHHHhhhCCC------CChhHHHHHHH-HHHhcCC--hHHHHHHHHHHHHC
Q 043955 507 YARCGALDIANKVFNCVQT------KDLILWTSMIN-ANGLHGR--GKVAIDLFYKMEAE 557 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~-~~~~~g~--~~~Al~l~~~m~~~ 557 (835)
....|++++|..-++.+.+ +-...|+.+.. +|+.++. +-+|.-+|.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3455667777666665542 23445666655 6777774 44666666555443
No 465
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.40 E-value=6.3e+02 Score=25.18 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSM-QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
..+..++...|.+-|+++--.+. ...|+.+ .+---..|-..--|.+.|++-+.++++++|.
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 33445555666666666655554 3445433 3322233333345778899999999999996
No 466
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.22 E-value=81 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhh
Q 043955 430 WTSMISSYVHNGLANEALELFYLMNE 455 (835)
Q Consensus 430 ~~~li~~~~~~g~~~~Al~lf~~m~~ 455 (835)
.-.+|.||.+.|++++|.+...++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578899999999999998888765
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.40 E-value=3.1e+02 Score=24.07 Aligned_cols=42 Identities=17% Similarity=0.423 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCc--hhHHHHHHHHHHhcCChhhHHHHHHh
Q 043955 380 QTKEIHGYIIRKGLSD--LVILNAIVDVYGKCGNIDYSRNVFES 421 (835)
Q Consensus 380 ~~~~i~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A~~~f~~ 421 (835)
.+.+++..+...|+.. ...|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6777777777777653 33888888888888888888888764
No 468
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.24 E-value=2.2e+02 Score=19.99 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043955 336 GYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA 371 (835)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 371 (835)
...+.|...++..++++|.+.|+.-+...+..++..
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345678888888899999888888887777766643
No 469
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.21 E-value=1.9e+02 Score=23.73 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=11.8
Q ss_pred HHhhcCchhHHHHHHHHHHhc
Q 043955 640 ACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l 660 (835)
.....|+.+.|...+++++++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 344556666666666655554
No 470
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.20 E-value=6.8e+02 Score=25.18 Aligned_cols=240 Identities=16% Similarity=0.183 Sum_probs=127.7
Q ss_pred ChhhHHHHHHhcCC--C-----CchhHHHHHHHHHhCCChHHHHHHHHHHhhc---CC--cCChhhhHhHHHHhhcccch
Q 043955 411 NIDYSRNVFESIES--K-----DVVSWTSMISSYVHNGLANEALELFYLMNEA---NV--ESDSITLVSALSAASSLSIL 478 (835)
Q Consensus 411 ~~~~A~~~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~---g~--~p~~~t~~~ll~a~~~~~~~ 478 (835)
..++|..-|++..+ + ...+..-||..+.+.|++++-++.|.+|+.- .+ .-+..+.++++.-.+.....
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555555432 1 2223344666666777777777776666431 11 12334555666555555454
Q ss_pred hhHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC------------C---ChhHHHHHHHHH
Q 043955 479 KKGKELNGFIIRK-----GFNLEGSVASSLVDMYARCGALDIANKVFNCVQT------------K---DLILWTSMINAN 538 (835)
Q Consensus 479 ~~a~~i~~~~~~~-----g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~------------~---~~~~~~~li~~~ 538 (835)
+.-..+++--.+. +-..=-.+.+-|...|...|.+..-.+++.++.. + =...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 4444444432221 0011112233455566666666666666655431 1 123566667888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-----ccCcHHHHHH-HHHHhhhcCCC--CCC---hhHHHHHHH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACS-----HSGLINEGKK-FLEIMRCDYQL--DPW---PEHYACLVD 607 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~-----~~g~~~~a~~-~~~~m~~~~~i--~p~---~~~y~~lv~ 607 (835)
....+-..--.+|++.+.-.-...+....+++.-|. +.|.+++|-. +|+..+ .|.- .|. .--|-.+.+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK-NYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK-NYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh-cccccCCcchhHHHHHHHHHH
Confidence 877877777788887765222222334567777774 5677887765 455443 4422 342 234666778
Q ss_pred HHhhcCC----HHHHHHHHHhCCCCCCHH--HHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 608 LLGRANH----LEEAYQFVRSMQIEPTAE--VWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 608 ~l~r~g~----~~eA~~~~~~m~~~p~~~--~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
+|.++|- -.|| -|++.|+. ....|..|+... +. ..++++++-+.
T Consensus 281 MLmkS~iNPFDsQEA------KPyKNdPEIlAMTnlv~aYQ~N-dI----~eFE~Il~~~~ 330 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEA------KPYKNDPEILAMTNLVAAYQNN-DI----IEFERILKSNR 330 (440)
T ss_pred HHHHcCCCCCccccc------CCCCCCHHHHHHHHHHHHHhcc-cH----HHHHHHHHhhh
Confidence 8877761 2222 15554544 567788887643 32 34566655543
No 471
>PRK14700 recombination factor protein RarA; Provisional
Probab=26.00 E-value=5.7e+02 Score=26.41 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=48.3
Q ss_pred cHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccC-----chHHHHHHHHHHHhCCCc
Q 043955 329 SWTTIIAGYAQ---NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKC-----MSQTKEIHGYIIRKGLSD 395 (835)
Q Consensus 329 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~~~i~~~~~~~~~~~ 395 (835)
..--+|+++.+ -.+++.|+-++-+|++.|..|....-..++.|....|. +..+...+..+...|+|.
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PE 199 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPE 199 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChH
Confidence 34445666654 57899999999999999999988888888888766663 444555555566666653
No 472
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.86 E-value=3.4e+02 Score=31.48 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHhcccCcHHHHHHHHHHhhhc-CCCCCC
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT----------FLALLYACSHSGLINEGKKFLEIMRCD-YQLDPW 598 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t----------~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~i~p~ 598 (835)
+...|+-.|....+++.-+++.+.+.. -||..- |.-.|+-=.+-|+-+.|+...-.|.+. -.+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 455666677777788888888888776 454321 222233334557777777766555433 234555
No 473
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.79 E-value=7e+02 Score=25.18 Aligned_cols=160 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred HhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCChhhHHHHHHHhhcCCChh-H
Q 043955 104 AKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRV----GLVTNAYTFVAALQACEDSSFET-L 178 (835)
Q Consensus 104 ~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~~~~~-~ 178 (835)
.+.+++++|.+++-.-.. .+.+.|+...|-++-.-|.+. +.++|......++......+.-+ .
T Consensus 1 v~~kky~eAidLL~~Ga~------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~ 68 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGAL------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPE 68 (260)
T ss_dssp HHTT-HHHHHHHHHHHHH------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TT
T ss_pred CccccHHHHHHHHHHHHH------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcch
Q ss_pred HHHHHHHHHHh-----CCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHH
Q 043955 179 GMEIHAATVKS-----GQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQ 253 (835)
Q Consensus 179 a~~l~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (835)
-..+...+++. ....|+.....+...|.+.|++.+|+.-|-.-..++...+-.++.-+...|...++--..-+..
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV 148 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAV 148 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHH
Q ss_pred HCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHh
Q 043955 254 GAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQ 290 (835)
Q Consensus 254 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 290 (835)
- -+...+++..|...+....+.
T Consensus 149 L---------------~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 L---------------QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp H---------------HHHHTTBHHHHHHHHHHHHHH
T ss_pred H---------------HHHHhcCHHHHHHHHHHHHHH
No 474
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=9e+02 Score=28.99 Aligned_cols=130 Identities=15% Similarity=0.253 Sum_probs=86.2
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKK 584 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 584 (835)
+....||+++.|.+.-..+. |...|..|+..-...|+.+-|...|++... |.-|-.-|.-.|+.+.-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34458999999998877665 556899999999999999999999988764 2222223455678777766
Q ss_pred HHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 585 FLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 585 ~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
+.+-.+.. -| ..+|..+. -.|+++|=.++++..+..|-+ | +. -..||.-+.|++..+++-.
T Consensus 720 m~~iae~r----~D~~~~~qnal----Yl~dv~ervkIl~n~g~~~la--y---lt-a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATGQFQNAL----YLGDVKERVKILENGGQLPLA--Y---LT-AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhh----hhhHHHHHHHH----HhccHHHHHHHHHhcCcccHH--H---HH-HhhcCcHHHHHHHHHhhcc
Confidence 65544321 12 12222111 247788888888877655532 2 11 2468988999998887765
No 475
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.96 E-value=7e+02 Score=24.53 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHH--HHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPD---HITF--LALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYAC 604 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd---~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~ 604 (835)
-.|.||--|.-+..+.+|-+.|.. +.|+.|. ..++ ..-+......|++++|.+..++...+ -++-+.+.+--
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 455666666655555556665543 3345552 2222 23344556778888888777755422 12222211211
Q ss_pred HH----HHHhhcCCHHHHHHHHHhC
Q 043955 605 LV----DLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 605 lv----~~l~r~g~~~eA~~~~~~m 625 (835)
|- -=+.|+|+.++|++|.+.-
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11 1146889999999998763
No 476
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=23.74 E-value=4.3e+02 Score=26.86 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=50.4
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc---CCCCCeeeHHHHHHHHHh--
Q 043955 63 CVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM---GEKEDVVLWNSIISAYSA-- 137 (835)
Q Consensus 63 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~n~li~~~~~-- 137 (835)
.=|.+++..+++.++....-+--...-..-..+...-|-.|+|.+.+..+.++-..- |...+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346777777777665543222211111111233444456688888888777776543 332455568777766655
Q ss_pred ---CCChhHHHHHH
Q 043955 138 ---SGQCLEALGLF 148 (835)
Q Consensus 138 ---~g~~~~A~~l~ 148 (835)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58888888876
No 477
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.86 E-value=1.8e+02 Score=23.82 Aligned_cols=49 Identities=2% Similarity=-0.033 Sum_probs=32.2
Q ss_pred hcCchhHHHHHHHHHHhcCCCCC---------CchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 643 VHSNKELGEIVAKKLLELDPGNP---------GNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~---------~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
..||...|...+.+.++...... .+...++.++...|.+++|.+..+..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45666666666666665543222 12356888999999999998876543
No 478
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=22.84 E-value=1.4e+03 Score=27.54 Aligned_cols=187 Identities=16% Similarity=0.102 Sum_probs=101.6
Q ss_pred HhCCChHHHHHHHHHHhhcCCcCChhhhHh------HHHHh--hcccchhhHHHHHHHHHH----hCCCCchhHHHHHHH
Q 043955 438 VHNGLANEALELFYLMNEANVESDSITLVS------ALSAA--SSLSILKKGKELNGFIIR----KGFNLEGSVASSLVD 505 (835)
Q Consensus 438 ~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~------ll~a~--~~~~~~~~a~~i~~~~~~----~g~~~~~~~~~~li~ 505 (835)
....++.+|..+..+....-..|+...-.. .+.+- ...++++.+..+-..... .-..+.......+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456788888888877765322333221111 11111 124566666665555543 344556677777788
Q ss_pred HHHhcCChhhHHHHhhhCCC----CChh---HHHHHHHH--HHhcCC--hHHHHHHHHHHHHC--CCCCC----HHHHHH
Q 043955 506 MYARCGALDIANKVFNCVQT----KDLI---LWTSMINA--NGLHGR--GKVAIDLFYKMEAE--SFAPD----HITFLA 568 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~~~~~----~~~~---~~~~li~~--~~~~g~--~~~Al~l~~~m~~~--g~~Pd----~~t~~~ 568 (835)
+..-.|+++.|..+.....+ -|+. .|..+..+ +-..|+ ..+.+..|...... +-+|- ..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999998877765443 2433 45554333 344553 23334444444332 12222 234555
Q ss_pred HHHHhcc-cCcHHHHHHHHHHhhhcCCCCCChhHH--HHHHHHHhhcCCHHHHHHHHHhC
Q 043955 569 LLYACSH-SGLINEGKKFLEIMRCDYQLDPWPEHY--ACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 569 ll~a~~~-~g~~~~a~~~~~~m~~~~~i~p~~~~y--~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
++.++.+ .+...++..-+. ....+...|-..-+ .+|..+....|++++|...+.++
T Consensus 586 ll~~~~r~~~~~~ear~~~~-~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIE-VGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHHhhhhHHhhhcch-hhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6665544 222333333333 22233444433333 37888999999999999988887
No 479
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.73 E-value=1.2e+03 Score=26.78 Aligned_cols=271 Identities=12% Similarity=0.018 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCC-cccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 043955 176 ETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKD-SVSWNSMLTGFVQNDLYCKAMQFFRELQG 254 (835)
Q Consensus 176 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (835)
.+..+++.......--.+....++.|+... +.=+.++-.++++++.. . ...|..++++....|-.....-+.+.+..
T Consensus 291 ~~~l~~L~~~~~~~~~~~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 291 VEVLKHLVQDIASDVQEPAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q ss_pred CCCCC-CcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHH
Q 043955 255 AGQKP-DQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTI 333 (835)
Q Consensus 255 ~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 333 (835)
..+.+ ........+-........+....++..+......+...++.+.+-.|+ +|
T Consensus 369 ~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~------------------------~l 424 (574)
T smart00638 369 KKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYG------------------------SL 424 (574)
T ss_pred CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHH------------------------HH
Q ss_pred HHHHHhcCCh------HHHHHHHHHHHHcCC-CCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 043955 334 IAGYAQNNCH------LKALELFRTVQLEGL-DADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVY 406 (835)
Q Consensus 334 i~~~~~~g~~------~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y 406 (835)
+..++..... ++....+.+...... .-|..--...|.++++.|.......+...+......+..+..+.+.++
T Consensus 425 v~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 425 VRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q ss_pred Hhc--CChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhh-cCCcCChhhhHhHHHHh
Q 043955 407 GKC--GNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNE-ANVESDSITLVSALSAA 472 (835)
Q Consensus 407 ~k~--g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~-~g~~p~~~t~~~ll~a~ 472 (835)
.+. ...+.++.++-.+-.........-|.+|...=+..--...++.|.. -...|+...-+.+.+..
T Consensus 505 r~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 505 RNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 480
>PRK10220 hypothetical protein; Provisional
Probab=22.02 E-value=47 Score=27.85 Aligned_cols=31 Identities=29% Similarity=0.599 Sum_probs=19.1
Q ss_pred eccccccCc-cchhhhhhhhhCceEEeecCCc
Q 043955 790 KNLRVCVDC-HSFCKLVSRLFGRELVVRDANR 820 (835)
Q Consensus 790 knlr~c~dc-h~~~k~~s~~~~r~i~~rd~~r 820 (835)
-++-||.+| |.|..--.....-.+++||+|-
T Consensus 18 ~~~~vCpeC~hEW~~~~~~~~~~~~~vkDsnG 49 (111)
T PRK10220 18 NGMYICPECAHEWNDAEPAQESDELIVKDANG 49 (111)
T ss_pred CCeEECCcccCcCCccccccccCCceEEcCCC
Confidence 367899999 6665543222223367899874
No 481
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.97 E-value=1.1e+03 Score=25.89 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCC
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQT 525 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~ 525 (835)
+-.+.+...++.|+.....-+.+.|..
T Consensus 254 vr~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 254 TRREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred hHHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 555666667777777766666666653
No 482
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=21.87 E-value=1e+03 Score=28.92 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=10.7
Q ss_pred HHHHHHhCCChhHHHHHHhc
Q 043955 201 LIAMYARCGKMTEAAGVLYQ 220 (835)
Q Consensus 201 li~~y~~~g~~~~A~~~f~~ 220 (835)
.+...+..|+.+-+..+++.
T Consensus 625 ~L~~Aa~~g~~~~v~~Ll~~ 644 (823)
T PLN03192 625 LLCTAAKRNDLTAMKELLKQ 644 (823)
T ss_pred HHHHHHHhCCHHHHHHHHHC
Confidence 34444555555555555554
No 483
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.50 E-value=7.2e+02 Score=28.13 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=28.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043955 526 KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI 564 (835)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~ 564 (835)
.+....-.|+.+... |+.+.++.++++|...|..|..+
T Consensus 244 ~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 244 IEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 344455556666554 88999999999999999888654
No 484
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.03 E-value=3.4e+02 Score=27.99 Aligned_cols=52 Identities=23% Similarity=0.205 Sum_probs=33.3
Q ss_pred HHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 043955 402 IVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNE 455 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~ 455 (835)
++..+.+.+++......+..+ +.+..-...+......|++..|+++..+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444455555554444444444 2334445567788899999999999888876
No 485
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.99 E-value=34 Score=33.94 Aligned_cols=16 Identities=31% Similarity=0.758 Sum_probs=13.2
Q ss_pred ccccCccchhhhhhhh
Q 043955 793 RVCVDCHSFCKLVSRL 808 (835)
Q Consensus 793 r~c~dch~~~k~~s~~ 808 (835)
-+|+|||+.+|.+=.-
T Consensus 253 EtC~~C~sYlKilyqe 268 (308)
T COG3058 253 ETCGDCNSYLKILYQE 268 (308)
T ss_pred hcCCcHHHHHHHHHHh
Confidence 4899999999987543
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=20.81 E-value=8.3e+02 Score=24.22 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHH
Q 043955 403 VDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGK 482 (835)
Q Consensus 403 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 482 (835)
+..|.+.-++.-|-..++++.+| .--..-|--|.+..+..---++.+-...++++-+.-.+..++ +...|+..+|.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEP--IQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQal 212 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEP--IQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQAL 212 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhh--HHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHH
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043955 483 ELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD 562 (835)
Q Consensus 483 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd 562 (835)
..++..... -.+-.+..+|.-..+|.+.....|+..+ ..++.++|++.+.++-+.|+.|.
T Consensus 213 NnLQst~~g-------------------~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 213 NNLQSTVNG-------------------FGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHHHHhcc-------------------ccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Q ss_pred HHHHHHH
Q 043955 563 HITFLAL 569 (835)
Q Consensus 563 ~~t~~~l 569 (835)
.+.-+..
T Consensus 273 Dii~~~F 279 (333)
T KOG0991|consen 273 DIITTLF 279 (333)
T ss_pred HHHHHHH
No 487
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.33 E-value=9.9e+02 Score=24.89 Aligned_cols=21 Identities=19% Similarity=0.670 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCchHHHHHHH
Q 043955 669 VLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 669 ~~l~~~y~~~g~~~~a~~~~~ 689 (835)
..|+++|.+.++|.+|..+..
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~ 127 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLV 127 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHh
Confidence 358899999999999998874
No 488
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=20.15 E-value=1.5e+02 Score=29.09 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=45.6
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..+|.+-+-+++.+++++-|+....|..++....++|+.+.|.+..+..-+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 457888999999999999999999999999999999999999887766554
Done!