Query 043955
Match_columns 835
No_of_seqs 868 out of 4663
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 17:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-41 7.2E-46 393.0 38.7 500 102-677 62-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.9E-41 1.3E-45 390.8 35.7 478 204-693 62-578 (597)
3 4g26_A Pentatricopeptide repea 99.9 7E-27 2.4E-31 259.8 19.6 184 428-612 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-23 6.6E-28 227.8 38.9 368 269-680 7-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 7.5E-26 2.5E-30 251.5 19.6 185 24-208 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.8E-23 1.6E-27 224.6 39.9 350 334-693 6-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 8.4E-24 2.9E-28 235.6 27.9 334 326-701 25-413 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.1E-20 3.8E-25 214.0 32.9 388 298-693 8-477 (514)
9 2gw1_A Mitochondrial precursor 99.9 2.8E-20 9.6E-25 210.7 30.1 270 398-672 188-490 (514)
10 1xi4_A Clathrin heavy chain; a 99.8 6.3E-16 2.1E-20 180.9 58.4 619 23-689 511-1304(1630)
11 3fp2_A TPR repeat-containing p 99.8 4.2E-19 1.4E-23 202.3 30.8 191 498-693 277-490 (537)
12 2y4t_A DNAJ homolog subfamily 99.8 5.1E-19 1.7E-23 196.8 29.4 302 363-693 27-357 (450)
13 1xi4_A Clathrin heavy chain; a 99.8 1.6E-15 5.3E-20 177.6 53.9 378 264-686 988-1376(1630)
14 3fp2_A TPR repeat-containing p 99.8 7.8E-18 2.7E-22 191.8 33.3 235 431-670 247-501 (537)
15 3ieg_A DNAJ homolog subfamily 99.8 5.1E-17 1.7E-21 174.2 29.8 312 327-677 3-352 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 2.1E-16 7.1E-21 169.4 31.6 302 363-693 4-334 (359)
17 1b89_A Protein (clathrin heavy 99.8 6.6E-18 2.3E-22 178.4 16.5 322 307-663 14-344 (449)
18 3hym_B Cell division cycle pro 99.7 3.4E-16 1.2E-20 165.6 27.4 183 497-681 125-321 (330)
19 1b89_A Protein (clathrin heavy 99.7 4.3E-17 1.5E-21 172.3 16.4 221 105-355 15-235 (449)
20 1fch_A Peroxisomal targeting s 99.7 2.8E-16 9.5E-21 169.4 19.4 276 407-689 36-354 (368)
21 3hym_B Cell division cycle pro 99.7 2.3E-15 8E-20 159.2 26.2 260 426-692 21-297 (330)
22 2ooe_A Cleavage stimulation fa 99.7 2.1E-14 7E-19 163.1 34.4 160 500-664 324-496 (530)
23 2ooe_A Cleavage stimulation fa 99.7 5.2E-14 1.8E-18 159.8 37.4 388 297-693 14-491 (530)
24 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.8E-20 157.5 21.6 242 400-686 38-286 (291)
25 1fch_A Peroxisomal targeting s 99.7 2.4E-15 8.2E-20 162.0 21.0 264 370-659 72-358 (368)
26 2xm6_A Protein corresponding t 99.7 1E-13 3.4E-18 155.7 34.2 351 309-677 56-452 (490)
27 4eqf_A PEX5-related protein; a 99.6 2E-15 7E-20 162.5 18.3 255 428-689 66-351 (365)
28 3spa_A Mtrpol, DNA-directed RN 99.6 1.3E-16 4.4E-21 181.3 7.7 128 493-621 123-258 (1134)
29 3spa_A Mtrpol, DNA-directed RN 99.6 8.2E-17 2.8E-21 182.8 5.2 148 427-613 127-286 (1134)
30 3mkr_A Coatomer subunit epsilo 99.6 1.7E-14 5.8E-19 149.4 21.4 241 405-693 8-263 (291)
31 4g1t_A Interferon-induced prot 99.6 7E-14 2.4E-18 156.2 28.1 360 329-705 53-470 (472)
32 4eqf_A PEX5-related protein; a 99.6 1.8E-14 6.3E-19 155.0 21.0 266 326-657 64-353 (365)
33 3cv0_A Peroxisome targeting si 99.6 1.9E-14 6.5E-19 151.9 20.5 251 398-689 23-310 (327)
34 2xm6_A Protein corresponding t 99.6 2.2E-12 7.6E-17 144.7 36.9 352 324-695 36-433 (490)
35 3cv0_A Peroxisome targeting si 99.6 1.7E-13 5.8E-18 144.6 24.3 274 326-663 20-318 (327)
36 4g1t_A Interferon-induced prot 99.6 4.5E-13 1.5E-17 149.7 25.6 380 261-672 51-471 (472)
37 2pl2_A Hypothetical conserved 99.5 5.9E-14 2E-18 138.6 15.4 191 494-689 2-209 (217)
38 3uq3_A Heat shock protein STI1 99.5 4.7E-13 1.6E-17 135.7 18.3 217 428-693 6-235 (258)
39 3uq3_A Heat shock protein STI1 99.5 3.9E-13 1.4E-17 136.3 16.7 238 397-674 6-256 (258)
40 3u4t_A TPR repeat-containing p 99.5 4.3E-13 1.5E-17 137.5 16.9 245 398-680 5-270 (272)
41 2h6f_A Protein farnesyltransfe 99.5 8.7E-13 3E-17 141.2 18.0 240 398-678 99-366 (382)
42 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.3E-12 4.4E-17 134.0 16.9 212 468-688 49-269 (275)
43 2ho1_A Type 4 fimbrial biogene 99.4 8E-12 2.7E-16 126.3 21.2 195 497-694 37-238 (252)
44 2h6f_A Protein farnesyltransfe 99.4 2.5E-12 8.7E-17 137.7 17.6 224 426-691 96-344 (382)
45 2ho1_A Type 4 fimbrial biogene 99.4 1.3E-11 4.5E-16 124.7 21.0 205 427-670 37-248 (252)
46 2vq2_A PILW, putative fimbrial 99.4 1.2E-11 4.1E-16 122.2 20.4 206 427-671 8-222 (225)
47 2vq2_A PILW, putative fimbrial 99.4 1.3E-11 4.5E-16 122.0 20.0 195 496-693 7-210 (225)
48 2q7f_A YRRB protein; TPR, prot 99.4 3.1E-12 1.1E-16 128.4 15.1 214 426-679 22-241 (243)
49 3e4b_A ALGK; tetratricopeptide 99.4 3E-10 1E-14 125.4 31.4 351 269-674 11-399 (452)
50 2q7f_A YRRB protein; TPR, prot 99.4 7E-12 2.4E-16 125.8 15.4 193 496-693 22-221 (243)
51 4abn_A Tetratricopeptide repea 99.4 2.5E-12 8.7E-17 143.0 12.6 188 496-688 101-315 (474)
52 3u4t_A TPR repeat-containing p 99.3 6.5E-11 2.2E-15 121.1 21.5 227 375-640 16-264 (272)
53 1xnf_A Lipoprotein NLPI; TPR, 99.3 4.7E-11 1.6E-15 122.2 19.8 188 365-556 46-243 (275)
54 3sf4_A G-protein-signaling mod 99.3 8.4E-12 2.9E-16 135.9 14.1 255 398-683 49-365 (406)
55 3vtx_A MAMA; tetratricopeptide 99.3 2.6E-11 8.8E-16 116.0 15.8 161 527-692 4-168 (184)
56 1ouv_A Conserved hypothetical 99.3 2.1E-10 7.1E-15 117.5 23.4 161 496-664 73-255 (273)
57 2pl2_A Hypothetical conserved 99.3 5.3E-11 1.8E-15 117.3 18.1 186 398-624 7-210 (217)
58 4gyw_A UDP-N-acetylglucosamine 99.3 1.2E-11 4.1E-16 143.1 15.1 160 527-691 8-171 (723)
59 3vtx_A MAMA; tetratricopeptide 99.3 2.9E-11 1E-15 115.6 14.6 165 496-665 4-175 (184)
60 3e4b_A ALGK; tetratricopeptide 99.3 1.8E-10 6.1E-15 127.2 21.9 343 332-695 8-388 (452)
61 4a1s_A PINS, partner of inscut 99.3 1.6E-11 5.6E-16 134.1 13.4 264 398-692 50-370 (411)
62 3sf4_A G-protein-signaling mod 99.3 2.9E-11 1E-15 131.6 15.2 265 398-693 11-335 (406)
63 3ro2_A PINS homolog, G-protein 99.3 3.3E-11 1.1E-15 127.1 14.5 264 399-693 8-331 (338)
64 2ond_A Cleavage stimulation fa 99.3 6.1E-10 2.1E-14 116.3 23.8 185 479-668 81-278 (308)
65 1ouv_A Conserved hypothetical 99.3 7.4E-10 2.5E-14 113.4 23.8 223 426-695 5-252 (273)
66 4e6h_A MRNA 3'-END-processing 99.2 1.5E-08 5E-13 115.8 36.0 146 77-223 51-222 (679)
67 3ro2_A PINS homolog, G-protein 99.2 1E-10 3.5E-15 123.3 16.5 272 330-663 8-335 (338)
68 4a1s_A PINS, partner of inscut 99.2 1.6E-10 5.5E-15 126.2 16.9 272 330-663 51-375 (411)
69 4gyw_A UDP-N-acetylglucosamine 99.2 5.5E-11 1.9E-15 137.6 13.5 243 496-745 8-274 (723)
70 4e6h_A MRNA 3'-END-processing 99.2 2.5E-08 8.6E-13 113.9 34.0 416 224-667 64-577 (679)
71 4i17_A Hypothetical protein; T 99.2 4.3E-10 1.5E-14 111.7 17.1 175 498-677 8-226 (228)
72 4i17_A Hypothetical protein; T 99.2 4.9E-10 1.7E-14 111.2 15.8 153 526-681 5-169 (228)
73 3ulq_A Response regulator aspa 99.2 1.7E-09 5.9E-14 116.8 21.4 232 402-662 109-370 (383)
74 2ond_A Cleavage stimulation fa 99.1 1.7E-09 6E-14 112.8 20.5 181 509-694 69-270 (308)
75 4abn_A Tetratricopeptide repea 99.1 4.3E-10 1.5E-14 125.0 16.7 176 513-693 84-286 (474)
76 3as5_A MAMA; tetratricopeptide 99.1 5.8E-10 2E-14 106.1 15.0 157 499-691 10-170 (186)
77 3nf1_A KLC 1, kinesin light ch 99.1 6.6E-11 2.3E-15 123.5 8.9 50 642-691 255-304 (311)
78 3nf1_A KLC 1, kinesin light ch 99.1 3.1E-10 1E-14 118.4 12.7 202 462-663 27-310 (311)
79 3as5_A MAMA; tetratricopeptide 99.1 1.7E-09 5.9E-14 102.7 16.9 170 463-668 9-181 (186)
80 4ga2_A E3 SUMO-protein ligase 99.0 2E-10 6.7E-15 105.6 6.2 141 535-680 4-149 (150)
81 1hz4_A MALT regulatory protein 99.0 3.8E-08 1.3E-12 105.7 24.6 263 399-692 17-320 (373)
82 3ulq_A Response regulator aspa 99.0 1.6E-09 5.5E-14 117.0 13.6 289 372-692 22-366 (383)
83 3q15_A PSP28, response regulat 99.0 8.9E-08 3.1E-12 103.0 25.0 229 402-660 107-365 (378)
84 1qqe_A Vesicular transport pro 99.0 7.3E-09 2.5E-13 107.1 15.2 164 499-664 79-273 (292)
85 3edt_B KLC 2, kinesin light ch 98.9 5.3E-09 1.8E-13 107.0 12.5 221 473-693 12-280 (283)
86 3qky_A Outer membrane assembly 98.9 6.8E-08 2.3E-12 97.9 20.0 187 527-738 14-245 (261)
87 4ga2_A E3 SUMO-protein ligase 98.9 4.9E-09 1.7E-13 96.1 9.4 116 569-687 3-121 (150)
88 3q15_A PSP28, response regulat 98.9 1.1E-07 3.7E-12 102.4 21.3 227 433-691 107-362 (378)
89 1qqe_A Vesicular transport pro 98.8 2.1E-08 7.1E-13 103.7 13.5 195 477-688 32-263 (292)
90 1hz4_A MALT regulatory protein 98.8 6E-07 2.1E-11 96.2 25.6 260 335-625 22-319 (373)
91 2pzi_A Probable serine/threoni 98.8 3E-09 1E-13 123.7 7.4 167 508-680 402-583 (681)
92 3qky_A Outer membrane assembly 98.8 7.9E-08 2.7E-12 97.4 17.0 186 496-683 14-250 (261)
93 2yhc_A BAMD, UPF0169 lipoprote 98.8 8.5E-08 2.9E-12 94.7 16.4 178 499-696 6-215 (225)
94 2fo7_A Synthetic consensus TPR 98.8 8.6E-08 2.9E-12 85.2 14.4 130 530-663 3-135 (136)
95 3qou_A Protein YBBN; thioredox 98.8 2.6E-08 9E-13 102.5 12.5 166 519-689 108-279 (287)
96 3gyz_A Chaperone protein IPGC; 98.8 2.3E-08 7.7E-13 91.4 9.8 102 592-693 28-132 (151)
97 2vsy_A XCC0866; transferase, g 98.8 6.8E-08 2.3E-12 110.2 16.1 158 510-672 2-169 (568)
98 2pzi_A Probable serine/threoni 98.7 8E-08 2.8E-12 111.7 16.2 194 473-672 402-614 (681)
99 3edt_B KLC 2, kinesin light ch 98.7 1.4E-07 4.9E-12 96.2 15.7 204 427-661 43-282 (283)
100 4gco_A Protein STI-1; structur 98.7 4.7E-08 1.6E-12 86.4 10.3 97 595-691 8-107 (126)
101 3mv2_B Coatomer subunit epsilo 98.7 1.5E-06 5.2E-11 88.0 22.5 173 516-693 85-281 (310)
102 2fo7_A Synthetic consensus TPR 98.7 1E-07 3.4E-12 84.8 12.3 126 565-693 3-131 (136)
103 3dra_A Protein farnesyltransfe 98.7 3.9E-07 1.3E-11 93.3 18.2 153 511-668 124-296 (306)
104 2r5s_A Uncharacterized protein 98.7 3.7E-08 1.3E-12 93.0 9.8 72 618-689 93-168 (176)
105 4gco_A Protein STI-1; structur 98.7 5.4E-08 1.9E-12 86.0 9.2 114 559-675 8-125 (126)
106 2vgx_A Chaperone SYCD; alterna 98.7 4.7E-08 1.6E-12 89.3 9.1 100 594-693 15-117 (148)
107 3mv2_B Coatomer subunit epsilo 98.7 3.7E-07 1.3E-11 92.5 16.0 159 502-667 105-289 (310)
108 2vsy_A XCC0866; transferase, g 98.7 1E-07 3.5E-12 108.7 13.1 147 541-692 2-155 (568)
109 3urz_A Uncharacterized protein 98.6 1.2E-07 4E-12 92.4 10.9 155 504-664 11-190 (208)
110 2r5s_A Uncharacterized protein 98.6 2.3E-07 7.7E-12 87.6 11.9 154 500-659 9-172 (176)
111 3rjv_A Putative SEL1 repeat pr 98.6 1.8E-06 6.2E-11 84.1 18.4 172 515-695 4-198 (212)
112 2ifu_A Gamma-SNAP; membrane fu 98.6 1.3E-06 4.6E-11 90.6 17.1 220 439-686 3-253 (307)
113 2xcb_A PCRH, regulatory protei 98.6 3E-07 1E-11 83.2 10.5 100 594-693 12-114 (142)
114 3qou_A Protein YBBN; thioredox 98.5 4E-07 1.4E-11 93.6 12.4 161 494-659 114-283 (287)
115 2uy1_A Cleavage stimulation fa 98.5 4.6E-05 1.6E-09 84.3 29.3 200 445-658 197-411 (493)
116 4f3v_A ESX-1 secretion system 98.5 3E-07 1E-11 91.9 10.3 138 531-673 105-249 (282)
117 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.2E-06 3.9E-11 86.4 14.6 185 464-668 6-221 (225)
118 3urz_A Uncharacterized protein 98.5 6.6E-07 2.3E-11 87.0 11.9 158 530-693 6-185 (208)
119 2c2l_A CHIP, carboxy terminus 98.5 1.4E-07 4.8E-12 96.6 7.4 190 496-693 3-198 (281)
120 3dra_A Protein farnesyltransfe 98.5 6.5E-06 2.2E-10 84.3 19.6 147 542-693 124-286 (306)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.2E-06 4E-11 85.4 13.6 124 566-694 9-150 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.5 4E-06 1.4E-10 81.5 17.1 143 501-664 10-154 (213)
123 3gyz_A Chaperone protein IPGC; 98.5 3E-07 1E-11 83.9 8.0 96 566-664 39-137 (151)
124 2lni_A Stress-induced-phosphop 98.4 1.3E-06 4.4E-11 77.4 11.6 112 566-680 19-133 (133)
125 2uy1_A Cleavage stimulation fa 98.4 4.5E-05 1.5E-09 84.4 26.5 367 36-455 7-412 (493)
126 3upv_A Heat shock protein STI1 98.4 9.2E-07 3.2E-11 77.9 10.3 95 599-693 4-100 (126)
127 3u3w_A Transcriptional activat 98.4 1E-05 3.4E-10 83.3 19.6 160 532-691 79-263 (293)
128 1na0_A Designed protein CTPR3; 98.4 1.3E-06 4.5E-11 76.2 10.8 112 565-679 11-125 (125)
129 2vyi_A SGTA protein; chaperone 98.4 1.2E-06 4E-11 77.3 10.3 115 565-682 14-131 (131)
130 2vgx_A Chaperone SYCD; alterna 98.4 3.2E-07 1.1E-11 83.6 6.5 110 559-671 16-129 (148)
131 2qfc_A PLCR protein; TPR, HTH, 98.4 3.9E-06 1.3E-10 86.4 15.6 161 529-689 76-261 (293)
132 1p5q_A FKBP52, FK506-binding p 98.4 7.5E-07 2.6E-11 93.8 9.7 159 510-691 126-291 (336)
133 3rjv_A Putative SEL1 repeat pr 98.4 1.2E-05 4.2E-10 78.1 17.4 160 496-662 17-199 (212)
134 2e2e_A Formate-dependent nitri 98.4 1E-06 3.5E-11 82.9 9.3 116 575-693 22-143 (177)
135 1a17_A Serine/threonine protei 98.4 2.4E-06 8.2E-11 79.1 11.5 124 566-692 16-144 (166)
136 2ifu_A Gamma-SNAP; membrane fu 98.3 1.2E-06 4.1E-11 91.0 9.6 197 474-692 3-222 (307)
137 2e2e_A Formate-dependent nitri 98.3 1.3E-06 4.3E-11 82.4 8.6 128 539-671 21-155 (177)
138 3q7a_A Farnesyltransferase alp 98.3 1.1E-05 3.8E-10 83.4 16.1 217 436-693 63-330 (349)
139 1hxi_A PEX5, peroxisome target 98.3 9.5E-07 3.2E-11 77.3 7.0 95 599-693 17-113 (121)
140 2xcb_A PCRH, regulatory protei 98.3 6.9E-07 2.4E-11 80.8 6.3 113 559-674 13-129 (142)
141 1wao_1 Serine/threonine protei 98.3 1.6E-06 5.3E-11 96.0 10.1 115 572-689 15-134 (477)
142 4f3v_A ESX-1 secretion system 98.3 8.2E-06 2.8E-10 81.5 14.1 180 509-693 18-236 (282)
143 2qfc_A PLCR protein; TPR, HTH, 98.3 3.6E-05 1.2E-09 79.1 19.4 192 429-662 77-288 (293)
144 3u3w_A Transcriptional activat 98.2 5.6E-05 1.9E-09 77.6 20.1 159 503-661 81-267 (293)
145 2kck_A TPR repeat; tetratricop 98.2 4.5E-06 1.5E-10 71.1 9.9 96 598-693 5-105 (112)
146 3dss_A Geranylgeranyl transfer 98.2 4.6E-05 1.6E-09 78.4 18.5 146 514-664 91-271 (331)
147 1wao_1 Serine/threonine protei 98.2 7.5E-06 2.6E-10 90.5 13.5 128 536-668 14-158 (477)
148 3sz7_A HSC70 cochaperone (SGT) 98.2 5E-06 1.7E-10 77.1 10.1 106 565-673 13-121 (164)
149 1elw_A TPR1-domain of HOP; HOP 98.2 1.2E-05 4E-10 69.2 11.6 104 566-672 7-113 (118)
150 2dba_A Smooth muscle cell asso 98.2 1.1E-05 3.7E-10 72.9 11.7 116 527-676 27-144 (148)
151 3gw4_A Uncharacterized protein 98.2 1.5E-05 5.2E-10 76.5 13.3 152 509-660 4-176 (203)
152 2fbn_A 70 kDa peptidylprolyl i 98.2 6.1E-07 2.1E-11 86.4 3.1 166 499-685 6-176 (198)
153 1elw_A TPR1-domain of HOP; HOP 98.2 1.1E-05 3.7E-10 69.4 11.0 92 529-625 5-98 (118)
154 3upv_A Heat shock protein STI1 98.2 4.7E-06 1.6E-10 73.2 8.7 107 566-675 7-122 (126)
155 3sz7_A HSC70 cochaperone (SGT) 98.2 5.1E-06 1.7E-10 77.0 8.9 96 598-693 10-107 (164)
156 4gcn_A Protein STI-1; structur 98.1 4.5E-06 1.5E-10 73.6 8.0 93 600-692 9-110 (127)
157 2hr2_A Hypothetical protein; a 98.1 4.3E-06 1.5E-10 75.4 7.6 73 601-673 59-144 (159)
158 3gw4_A Uncharacterized protein 98.1 2E-05 6.8E-10 75.7 13.0 153 539-692 3-174 (203)
159 3rkv_A Putative peptidylprolyl 98.1 8.7E-06 3E-10 75.3 9.9 62 632-693 64-125 (162)
160 3q49_B STIP1 homology and U bo 98.1 1.2E-05 4.2E-10 71.6 10.4 96 598-693 8-105 (137)
161 2fbn_A 70 kDa peptidylprolyl i 98.1 3.2E-06 1.1E-10 81.3 6.9 144 470-619 12-176 (198)
162 2lni_A Stress-induced-phosphop 98.1 2E-05 6.9E-10 69.4 11.6 96 598-693 15-112 (133)
163 2dba_A Smooth muscle cell asso 98.1 3.2E-05 1.1E-09 69.7 12.7 96 598-693 27-127 (148)
164 1a17_A Serine/threonine protei 98.1 3.3E-05 1.1E-09 71.2 12.7 128 528-660 13-146 (166)
165 1na0_A Designed protein CTPR3; 98.1 3.6E-05 1.2E-09 66.7 12.2 95 599-693 9-105 (125)
166 1dce_A Protein (RAB geranylger 98.1 4.7E-05 1.6E-09 85.7 16.1 168 511-683 43-244 (567)
167 1p5q_A FKBP52, FK506-binding p 98.1 1.4E-05 4.8E-10 83.9 11.2 118 496-618 146-283 (336)
168 1hxi_A PEX5, peroxisome target 98.1 1E-05 3.4E-10 70.6 8.2 95 568-665 22-119 (121)
169 3dss_A Geranylgeranyl transfer 98.0 0.00017 5.7E-09 74.3 18.2 157 513-675 126-319 (331)
170 3q49_B STIP1 homology and U bo 98.0 1.1E-05 3.7E-10 71.9 8.2 98 563-663 9-109 (137)
171 2vyi_A SGTA protein; chaperone 98.0 3.6E-05 1.2E-09 67.4 11.3 116 527-647 11-130 (131)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.1E-05 7.1E-10 86.5 11.5 156 509-687 246-407 (457)
173 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.3E-10 84.4 8.9 146 528-693 179-327 (338)
174 2c2l_A CHIP, carboxy terminus 98.0 1.6E-05 5.5E-10 81.2 9.0 83 373-455 15-100 (281)
175 3q7a_A Farnesyltransferase alp 98.0 0.00063 2.2E-08 70.3 20.8 222 408-670 66-342 (349)
176 2kck_A TPR repeat; tetratricop 98.0 3.1E-05 1.1E-09 65.7 9.3 97 566-665 9-111 (112)
177 1ihg_A Cyclophilin 40; ppiase 98.0 2.1E-05 7.3E-10 83.6 10.1 137 529-687 224-363 (370)
178 4gcn_A Protein STI-1; structur 97.9 2.4E-05 8.3E-10 68.8 8.3 91 530-625 10-109 (127)
179 2hr2_A Hypothetical protein; a 97.9 2E-05 6.7E-10 71.1 7.6 92 602-693 14-130 (159)
180 2xev_A YBGF; tetratricopeptide 97.9 3.8E-05 1.3E-09 67.5 9.2 88 605-692 8-103 (129)
181 1elr_A TPR2A-domain of HOP; HO 97.9 1.9E-05 6.6E-10 69.2 7.0 113 529-675 5-122 (131)
182 3k9i_A BH0479 protein; putativ 97.9 1E-05 3.5E-10 70.1 4.7 92 576-667 3-97 (117)
183 3k9i_A BH0479 protein; putativ 97.9 7.3E-06 2.5E-10 71.0 3.7 83 611-693 2-89 (117)
184 3rkv_A Putative peptidylprolyl 97.8 1.5E-05 5.1E-10 73.6 5.7 122 528-675 11-142 (162)
185 1elr_A TPR2A-domain of HOP; HO 97.8 7.2E-05 2.5E-09 65.4 10.0 95 599-693 4-107 (131)
186 4b4t_Q 26S proteasome regulato 97.8 0.00015 5E-09 79.1 13.8 186 506-691 13-242 (434)
187 2l6j_A TPR repeat-containing p 97.8 2.3E-05 7.8E-10 66.7 5.8 89 598-686 3-99 (111)
188 2if4_A ATFKBP42; FKBP-like, al 97.8 3.1E-05 1.1E-09 81.3 7.5 112 565-693 181-292 (338)
189 2xev_A YBGF; tetratricopeptide 97.8 0.00015 5.2E-09 63.4 11.0 100 572-671 11-116 (129)
190 3ro3_A PINS homolog, G-protein 97.7 0.00013 4.3E-09 66.6 10.0 95 530-624 11-114 (164)
191 3ro3_A PINS homolog, G-protein 97.7 7.8E-05 2.7E-09 68.0 8.3 129 564-692 10-156 (164)
192 3n71_A Histone lysine methyltr 97.7 9.8E-05 3.3E-09 81.0 9.5 128 573-700 319-470 (490)
193 1na3_A Designed protein CTPR2; 97.6 0.00014 4.7E-09 59.0 7.8 81 599-679 9-91 (91)
194 1zu2_A Mitochondrial import re 97.6 2.5E-05 8.4E-10 70.2 2.9 52 616-667 63-127 (158)
195 1ihg_A Cyclophilin 40; ppiase 97.6 0.00019 6.4E-09 76.3 10.3 63 631-693 273-335 (370)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0003 1E-08 77.2 11.3 118 497-619 268-405 (457)
197 1zu2_A Mitochondrial import re 97.5 5.2E-05 1.8E-09 68.1 3.1 83 611-693 14-119 (158)
198 2kat_A Uncharacterized protein 97.4 0.00021 7.2E-09 61.2 6.7 76 618-693 4-81 (115)
199 4b4t_Q 26S proteasome regulato 97.4 0.0011 3.7E-08 72.1 14.0 157 536-692 12-202 (434)
200 3ma5_A Tetratricopeptide repea 97.4 0.00031 1.1E-08 58.5 7.5 64 630-693 6-69 (100)
201 3bee_A Putative YFRE protein; 97.4 0.00053 1.8E-08 56.0 7.9 67 629-695 4-73 (93)
202 1dce_A Protein (RAB geranylger 97.4 0.00085 2.9E-08 75.4 12.2 132 542-678 43-191 (567)
203 2l6j_A TPR repeat-containing p 97.2 0.00031 1.1E-08 59.4 4.8 94 527-625 3-104 (111)
204 2kat_A Uncharacterized protein 97.1 0.00054 1.8E-08 58.6 5.4 80 582-664 4-86 (115)
205 3n71_A Histone lysine methyltr 97.1 0.0026 8.8E-08 69.7 11.6 122 538-659 319-463 (490)
206 3ly7_A Transcriptional activat 96.9 0.0073 2.5E-07 62.2 13.0 138 524-664 190-343 (372)
207 3lvg_A Clathrin heavy chain 1; 96.9 0.00042 1.4E-08 72.5 3.1 431 125-661 54-510 (624)
208 3qwp_A SET and MYND domain-con 96.9 0.00093 3.2E-08 72.1 5.9 88 633-738 331-426 (429)
209 1klx_A Cysteine rich protein B 96.8 0.0078 2.7E-07 53.3 10.3 112 541-661 8-127 (138)
210 3ly7_A Transcriptional activat 96.7 0.0044 1.5E-07 63.9 9.3 130 560-693 191-338 (372)
211 3qww_A SET and MYND domain-con 96.7 0.00075 2.6E-08 72.7 3.6 58 634-691 343-408 (433)
212 1na3_A Designed protein CTPR2; 96.7 0.0063 2.2E-07 48.8 8.4 63 631-693 9-71 (91)
213 2kc7_A BFR218_protein; tetratr 96.7 0.004 1.4E-07 51.2 7.2 64 605-668 6-72 (99)
214 3lvg_A Clathrin heavy chain 1; 96.6 0.00019 6.4E-09 75.0 -1.7 416 7-492 40-510 (624)
215 1klx_A Cysteine rich protein B 96.5 0.017 5.7E-07 51.2 10.9 112 577-696 9-128 (138)
216 3ma5_A Tetratricopeptide repea 96.4 0.0065 2.2E-07 50.2 7.0 62 527-590 6-68 (100)
217 3qww_A SET and MYND domain-con 96.4 0.0075 2.6E-07 64.8 8.8 92 576-667 311-423 (433)
218 2kc7_A BFR218_protein; tetratr 96.3 0.003 1E-07 51.9 4.2 82 573-665 10-95 (99)
219 3mkq_A Coatomer beta'-subunit; 96.2 0.082 2.8E-06 62.4 17.4 102 403-521 659-760 (814)
220 3qwp_A SET and MYND domain-con 96.1 0.018 6.2E-07 62.0 10.3 72 600-671 330-416 (429)
221 3mkq_A Coatomer beta'-subunit; 96.1 0.053 1.8E-06 64.1 15.2 50 505-556 660-709 (814)
222 3u64_A Protein TP_0956; tetrat 95.7 0.012 4.2E-07 58.0 6.1 86 616-701 180-276 (301)
223 3bee_A Putative YFRE protein; 95.3 0.071 2.4E-06 43.1 8.4 74 598-672 5-83 (93)
224 1wy6_A Hypothetical protein ST 95.3 0.5 1.7E-05 40.1 13.2 140 539-697 18-157 (172)
225 2v5f_A Prolyl 4-hydroxylase su 95.0 0.077 2.6E-06 44.0 8.1 73 599-671 5-86 (104)
226 3u64_A Protein TP_0956; tetrat 94.5 0.083 2.8E-06 52.1 7.8 111 510-625 134-266 (301)
227 1pc2_A Mitochondria fission pr 94.3 0.2 6.9E-06 44.3 9.0 89 577-667 12-107 (152)
228 3mkq_B Coatomer subunit alpha; 94.0 0.68 2.3E-05 42.0 12.1 129 505-657 13-141 (177)
229 1pc2_A Mitochondria fission pr 93.8 0.14 4.8E-06 45.3 7.2 87 543-632 13-105 (152)
230 3mkq_B Coatomer subunit alpha; 93.2 0.4 1.4E-05 43.5 9.3 79 606-695 12-90 (177)
231 4gns_B Protein CSD3, chitin bi 90.7 0.31 1.1E-05 55.5 6.8 52 640-691 346-397 (754)
232 2v5f_A Prolyl 4-hydroxylase su 90.5 0.88 3E-05 37.4 7.8 66 565-630 7-78 (104)
233 4h7y_A Dual specificity protei 89.8 3.4 0.00012 36.0 10.7 100 523-625 8-120 (161)
234 1nzn_A CGI-135 protein, fissio 87.3 3.3 0.00011 35.1 9.0 35 636-670 79-113 (126)
235 2qx5_A Nucleoporin NIC96; mRNA 87.2 18 0.00062 40.5 17.6 81 433-524 300-383 (661)
236 1qsa_A Protein (soluble lytic 87.0 42 0.0015 37.3 26.1 275 383-671 57-355 (618)
237 4h7y_A Dual specificity protei 86.6 0.9 3.1E-05 39.6 5.2 98 598-695 12-124 (161)
238 2qx5_A Nucleoporin NIC96; mRNA 85.5 51 0.0018 36.9 24.6 239 333-630 300-569 (661)
239 1v54_E Cytochrome C oxidase po 83.4 5.9 0.0002 31.7 8.0 68 618-697 32-99 (109)
240 3lpz_A GET4 (YOR164C homolog); 82.4 44 0.0015 33.7 19.1 167 96-289 38-215 (336)
241 2p58_C Putative type III secre 81.9 11 0.00039 29.9 9.0 60 505-567 48-107 (116)
242 2uwj_G Type III export protein 81.3 11 0.00037 30.0 8.6 61 504-567 46-106 (115)
243 2wpv_A GET4, UPF0363 protein Y 79.9 52 0.0018 32.9 16.4 167 95-288 35-215 (312)
244 2wpv_A GET4, UPF0363 protein Y 79.8 52 0.0018 32.9 18.9 170 397-592 34-217 (312)
245 3lpz_A GET4 (YOR164C homolog); 78.7 58 0.002 32.8 21.1 168 398-591 37-215 (336)
246 1nzn_A CGI-135 protein, fissio 78.7 8.2 0.00028 32.6 8.0 65 629-693 33-102 (126)
247 2p58_C Putative type III secre 78.6 17 0.00057 29.0 8.9 65 398-465 42-106 (116)
248 1wy6_A Hypothetical protein ST 78.3 31 0.0011 29.5 13.4 84 408-493 73-156 (172)
249 2y69_E Cytochrome C oxidase su 78.0 6.8 0.00023 33.2 7.1 69 617-697 74-142 (152)
250 4gns_B Protein CSD3, chitin bi 77.8 44 0.0015 38.1 16.1 52 573-627 347-399 (754)
251 2ff4_A Probable regulatory pro 77.8 9.5 0.00032 39.9 10.3 69 532-602 175-248 (388)
252 4b4t_P 26S proteasome regulato 76.4 46 0.0016 35.4 15.4 95 531-625 140-244 (445)
253 2uwj_G Type III export protein 76.1 16 0.00053 29.1 8.1 65 398-465 41-105 (115)
254 1zbp_A Hypothetical protein VP 75.9 11 0.00038 36.5 9.1 51 538-590 7-58 (273)
255 3ffl_A Anaphase-promoting comp 74.8 8.6 0.00029 34.2 7.3 32 598-629 121-152 (167)
256 1y8m_A FIS1; mitochondria, unk 74.7 41 0.0014 29.0 11.8 70 596-665 36-111 (144)
257 3o48_A Mitochondria fission 1 73.2 11 0.00037 32.1 7.2 33 633-665 80-112 (134)
258 4fhn_B Nucleoporin NUP120; pro 71.6 1.3E+02 0.0044 36.5 19.4 144 398-557 814-967 (1139)
259 1y8m_A FIS1; mitochondria, unk 71.3 36 0.0012 29.4 10.1 85 545-632 19-111 (144)
260 3ltm_A Alpha-REP4; protein eng 71.2 64 0.0022 29.7 19.6 49 495-543 93-141 (211)
261 3txn_A 26S proteasome regulato 70.0 61 0.0021 33.7 13.8 123 502-625 24-165 (394)
262 1wdy_A 2-5A-dependent ribonucl 69.6 82 0.0028 30.3 16.0 47 274-320 192-240 (285)
263 2l0z_A Glycoprotein G2; zinc-b 69.4 1.5 5.1E-05 27.9 0.8 13 822-834 16-29 (42)
264 3mv2_A Coatomer subunit alpha; 68.1 33 0.0011 34.1 10.6 107 539-663 125-239 (325)
265 1v54_E Cytochrome C oxidase po 67.7 25 0.00085 28.2 7.6 62 544-607 26-87 (109)
266 1zbp_A Hypothetical protein VP 64.9 31 0.0011 33.4 9.5 111 571-694 5-129 (273)
267 2ff4_A Probable regulatory pro 64.6 9 0.00031 40.1 6.4 58 635-692 175-232 (388)
268 1wdy_A 2-5A-dependent ribonucl 59.7 1.2E+02 0.0042 28.9 14.3 15 307-321 113-127 (285)
269 1qsa_A Protein (soluble lytic 59.2 2.2E+02 0.0075 31.6 31.8 226 441-684 228-469 (618)
270 1qc6_A EVH1 domain from ENA/VA 56.8 4.2 0.00014 34.8 1.7 40 783-830 44-87 (130)
271 3ltj_A Alpharep-4; protein eng 56.7 1.1E+02 0.0039 27.6 18.5 48 496-543 89-136 (201)
272 3eiq_C Programmed cell death p 56.4 1.5E+02 0.005 30.3 13.3 64 500-563 220-288 (358)
273 3kea_A K1L; tropism, ANK repea 56.3 1.3E+02 0.0044 29.3 13.1 16 102-117 68-83 (285)
274 1n11_A Ankyrin; clathrin, BAND 55.9 1.9E+02 0.0066 30.0 15.8 77 34-118 22-102 (437)
275 4b4t_P 26S proteasome regulato 53.8 2.2E+02 0.0075 30.0 22.0 26 331-356 141-166 (445)
276 1k1a_A B-cell lymphoma 3-encod 52.9 1.3E+02 0.0043 28.0 12.1 15 206-220 87-101 (241)
277 2y69_E Cytochrome C oxidase su 51.2 68 0.0023 27.3 7.9 60 546-607 71-130 (152)
278 1n11_A Ankyrin; clathrin, BAND 50.9 2.3E+02 0.0079 29.4 17.7 289 5-321 24-333 (437)
279 1k1a_A B-cell lymphoma 3-encod 50.7 1.6E+02 0.0053 27.3 12.8 113 205-322 53-173 (241)
280 3ltj_A Alpharep-4; protein eng 50.4 1.4E+02 0.0049 26.9 20.1 150 398-556 30-179 (201)
281 3mkr_B Coatomer subunit alpha; 49.1 44 0.0015 33.3 7.7 38 626-663 191-230 (320)
282 3ffl_A Anaphase-promoting comp 48.6 73 0.0025 28.3 8.3 119 557-689 12-146 (167)
283 3jxi_A Vanilloid receptor-rela 48.5 55 0.0019 31.3 8.8 53 134-186 11-72 (260)
284 2lo3_A SAGA-associated factor 47.8 4.6 0.00016 25.9 0.4 13 791-803 16-28 (44)
285 3hra_A Ankyrin repeat family p 47.4 89 0.0031 28.1 9.7 111 79-194 53-172 (201)
286 3ltm_A Alpha-REP4; protein eng 46.9 1.7E+02 0.0058 26.6 20.4 149 399-556 36-184 (211)
287 3o48_A Mitochondria fission 1 46.7 1.3E+02 0.0046 25.4 10.0 83 548-633 23-113 (134)
288 4fhn_B Nucleoporin NUP120; pro 44.2 2.2E+02 0.0077 34.4 14.8 55 600-654 900-961 (1139)
289 4b4t_R RPN7, 26S proteasome re 43.8 68 0.0023 33.8 9.0 96 499-594 133-239 (429)
290 3twe_A Alpha4H; unknown functi 43.7 21 0.00072 19.5 2.4 15 724-738 3-17 (27)
291 3kea_A K1L; tropism, ANK repea 42.9 57 0.0019 32.0 7.9 17 448-464 209-225 (285)
292 4b4t_R RPN7, 26S proteasome re 42.6 1.1E+02 0.0038 32.2 10.5 96 530-625 133-234 (429)
293 3eu9_A Huntingtin-interacting 41.6 1.2E+02 0.0041 28.0 9.9 16 506-521 216-231 (240)
294 3ljn_A Hypothetical protein; a 40.7 1.1E+02 0.0036 31.1 9.9 18 203-220 178-195 (364)
295 3hra_A Ankyrin repeat family p 40.4 2E+02 0.0068 25.6 11.0 149 205-361 12-172 (201)
296 3eu9_A Huntingtin-interacting 38.5 1.7E+02 0.0057 27.0 10.3 47 69-119 17-65 (240)
297 3jxi_A Vanilloid receptor-rela 36.8 95 0.0033 29.5 8.4 87 32-118 11-115 (260)
298 2r9g_A AAA ATPase, central reg 36.7 2E+02 0.0068 26.3 9.3 65 329-394 13-85 (204)
299 2zu6_B Programmed cell death p 34.9 3.4E+02 0.012 26.8 11.9 201 299-500 6-240 (307)
300 4ady_A RPN2, 26S proteasome re 34.6 6.1E+02 0.021 29.6 40.8 249 308-566 386-664 (963)
301 3b7b_A Euchromatic histone-lys 34.3 1.6E+02 0.0056 27.2 9.5 17 102-118 17-33 (237)
302 2pnn_A Transient receptor pote 33.8 1.9E+02 0.0064 27.7 10.0 15 206-220 109-123 (273)
303 2hgo_A CASSIICOLIN; toxin, dis 32.0 8.8 0.0003 21.1 -0.2 13 823-835 8-22 (27)
304 2k0q_A Putative uncharacterize 31.5 15 0.00052 26.7 0.9 20 811-830 8-27 (74)
305 4ady_A RPN2, 26S proteasome re 31.4 6.9E+02 0.023 29.2 35.4 279 403-693 381-695 (963)
306 2rfa_A Transient receptor pote 30.6 3E+02 0.01 25.1 10.7 48 247-294 135-184 (232)
307 3bge_A Predicted ATPase; struc 29.9 2E+02 0.0069 26.2 8.2 45 332-376 9-56 (201)
308 3mv2_A Coatomer subunit alpha; 29.7 2.5E+02 0.0085 27.9 9.5 31 329-359 209-239 (325)
309 1j0t_A MIH, MOLT-inhibiting ho 29.5 5.7 0.00019 30.1 -1.6 14 790-803 20-33 (78)
310 3ctd_A Putative ATPase, AAA fa 29.5 2.8E+02 0.0095 25.6 9.1 66 329-394 34-107 (213)
311 3t8k_A Uncharacterized protein 29.4 2.4E+02 0.0083 25.2 9.3 56 104-160 14-70 (186)
312 2zu6_B Programmed cell death p 29.3 4E+02 0.014 26.3 11.3 156 198-354 6-193 (307)
313 3eiq_C Programmed cell death p 28.5 4.8E+02 0.016 26.4 15.0 65 398-462 219-288 (358)
314 3ebh_A PFA-M1, M1 family amino 28.3 1.2E+02 0.004 35.4 8.2 123 562-687 730-860 (889)
315 2nsz_A Programmed cell death p 28.0 2.7E+02 0.0091 23.3 9.0 64 398-461 9-77 (129)
316 3bqo_A Telomeric repeat-bindin 28.0 1.6E+02 0.0056 26.7 7.1 59 615-673 94-159 (211)
317 3txn_A 26S proteasome regulato 27.5 5.2E+02 0.018 26.5 23.0 222 432-695 104-344 (394)
318 3ljn_A Hypothetical protein; a 27.4 2.8E+02 0.0097 27.8 10.5 14 407-420 181-194 (364)
319 2nsz_A Programmed cell death p 27.3 2.2E+02 0.0074 23.9 7.8 64 500-563 10-78 (129)
320 2d2s_A Exocyst complex compone 27.2 1.8E+02 0.0063 27.5 8.1 23 433-455 24-46 (235)
321 3ygs_P Procaspase 9; apoptosis 27.1 66 0.0023 25.6 4.2 33 7-39 52-84 (97)
322 1oyz_A Hypothetical protein YI 27.0 4.1E+02 0.014 25.2 21.5 115 460-577 103-220 (280)
323 1oyz_A Hypothetical protein YI 25.8 4.4E+02 0.015 25.1 20.4 16 527-542 205-220 (280)
324 3hht_A NitrIle hydratase alpha 24.9 61 0.0021 29.6 3.8 44 754-799 71-120 (216)
325 3aji_A 26S proteasome non-ATPa 24.9 3.2E+02 0.011 24.9 9.7 20 100-119 10-29 (231)
326 2d2s_A Exocyst complex compone 24.8 1.9E+02 0.0066 27.3 7.7 23 231-253 96-118 (235)
327 3esl_A Checkpoint serine/threo 24.8 4.1E+02 0.014 24.4 11.8 90 633-749 82-173 (202)
328 2etb_A Transient receptor pote 24.0 2.8E+02 0.0096 26.0 9.2 26 133-158 7-32 (256)
329 3b7b_A Euchromatic histone-lys 22.5 3E+02 0.01 25.3 8.9 16 103-118 84-99 (237)
330 3syn_E ATP-binding protein YLX 22.0 43 0.0015 17.6 1.3 17 678-694 3-19 (23)
331 3aji_A 26S proteasome non-ATPa 21.8 3.6E+02 0.012 24.5 9.3 84 30-118 10-95 (231)
332 2dl1_A Spartin; SPG20, MIT, st 21.7 2.5E+02 0.0086 23.0 6.5 35 650-693 48-82 (116)
333 2p1h_A APAF-1, apoptotic prote 21.5 2.6E+02 0.0088 21.7 6.8 61 383-446 26-86 (94)
334 4b4t_S RPN3, 26S proteasome re 21.4 3.5E+02 0.012 29.1 9.5 60 94-153 232-298 (523)
335 1bd8_A P19INK4D CDK4/6 inhibit 21.4 2.1E+02 0.0072 24.1 7.0 15 307-321 109-123 (156)
336 2ion_A PDCD4, programmed cell 20.7 1.3E+02 0.0044 26.3 5.1 63 398-460 11-78 (152)
337 3esl_A Checkpoint serine/threo 20.5 2.1E+02 0.0071 26.3 6.6 59 378-436 95-155 (202)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-41 Score=393.00 Aligned_cols=500 Identities=9% Similarity=-0.065 Sum_probs=360.5
Q ss_pred HHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHH
Q 043955 102 MYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGME 181 (835)
Q Consensus 102 ~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 181 (835)
.+.++|.+..+...|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 45677888899999999987 7999999999999999999999999999985 56888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCC-------------------CcccHHHHHHHHHcCCCh
Q 043955 182 IHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENK-------------------DSVSWNSMLTGFVQNDLY 242 (835)
Q Consensus 182 l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------d~~~~~~li~~~~~~g~~ 242 (835)
++..+... .++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99987543 678889999999999999999999999954433 478999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHH---HH-HHHHHHhCCCccccccchhhhhhhccCChhHHHHH
Q 043955 243 CKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGK---EL-HAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRV 318 (835)
Q Consensus 243 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~---~i-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 318 (835)
++|+++|++|... .|+..+....+..+.......... .+ +..+...+..+...+++.++.+|.++|++++|.++
T Consensus 217 ~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999999885 465544333333332222211111 11 34444445555667788899999999999999999
Q ss_pred HHhcCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCch
Q 043955 319 FYQMTA--QDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDL 396 (835)
Q Consensus 319 f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~ 396 (835)
|+++.. +++.+|+.++.+|.+.|++++|+++|++|...+. .+..++..++.++...|+.+.+..++..+.+..+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 373 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH
Confidence 999987 7899999999999999999999999999987652 2555666666666666666666666666665555555
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhh
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIE---SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAAS 473 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~ 473 (835)
.+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|...+
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------- 437 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---------------- 437 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 555556666666666666666665543 1344555555555555555555555555554421
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
..+..+|+.++.+|.+.|++++|+++|++
T Consensus 438 ---------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 438 ---------------------------------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp ---------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12455566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhc---CCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 043955 554 MEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCD---YQLDPW--PEHYACLVDLLGRANHLEEAYQFVRSM-QI 627 (835)
Q Consensus 554 m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~i~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 627 (835)
|.+.. +.+..+|..+...+.+.|++++|.++|+.+.+. .+..|+ ..+|.+++++|.+.|++++|.+.++++ ..
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 66531 224556666666666666666666666666533 256776 788999999999999999999998887 44
Q ss_pred CC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh
Q 043955 628 EP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA 677 (835)
Q Consensus 628 ~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 677 (835)
.| ++.+|..|..+|...|+.+.|...++++++++|+++..|..|+++|..
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 45 678999999999999999999999999999999999999999999864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-41 Score=390.75 Aligned_cols=478 Identities=10% Similarity=-0.048 Sum_probs=396.0
Q ss_pred HHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHH
Q 043955 204 MYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKEL 283 (835)
Q Consensus 204 ~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 283 (835)
.+.+.|....+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|.+.|+++.|.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356678888889999999989999999999999999999999999999985 568889999999999999999999999
Q ss_pred HHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCC-------------------CcccHHHHHHHHHhcCChH
Q 043955 284 HAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQ-------------------DFISWTTIIAGYAQNNCHL 344 (835)
Q Consensus 284 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~ 344 (835)
+..+... .++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987543 678889999999999999999999999965443 3789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHH----HHHHHHhCCCc-hhHHHHHHHHHHhcCChhhHHHHH
Q 043955 345 KALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEI----HGYIIRKGLSD-LVILNAIVDVYGKCGNIDYSRNVF 419 (835)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i----~~~~~~~~~~~-~~~~~~li~~y~k~g~~~~A~~~f 419 (835)
+|+++|++|...+ |+..+....+..+...........+ +..+...+... ..+++.++.+|.++|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999864 5544433333332222211111111 22232223322 237778899999999999999999
Q ss_pred HhcCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCch
Q 043955 420 ESIES--KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEG 497 (835)
Q Consensus 420 ~~~~~--~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 497 (835)
+++.+ ++..+|+.++.+|.+.|++++|+++|++|...+ ..+..++..++.++...|++++|.+++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 799999999999999999999999999999865 3377889999999999999999999999998654 5578
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACS 574 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~ 574 (835)
.+++.++.+|.++|++++|.++|+++. ..++.+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 899999999999999999999999875 4578899999999999999999999999999852 346789999999999
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHhhc
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-------QIEPT--AEVWCALLGACRVH 644 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~a~~~~ 644 (835)
+.|++++|.++|+.+.+. .| ++..|.+++++|.+.|++++|.++++++ +..|+ ..+|..++.+|..+
T Consensus 453 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 999999999999999854 45 5889999999999999999999999988 55887 77999999999999
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+.+.|+..++++++++|+++..|..|+++|...|+|++|.+..+.+.+
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888776
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=7e-27 Score=259.79 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhccc---------chhhHHHHHHHHHHhCCCCchh
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLS---------ILKKGKELNGFIIRKGFNLEGS 498 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~~g~~~~~~ 498 (835)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4588899999999999999999999999999999999999999998754 4688999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQ----TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACS 574 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~ 574 (835)
+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999987 47999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRA 612 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~ 612 (835)
+.|++++|.++|+.|++. ++.|+..+|+.+++.+.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999865 9999999999999998764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.9e-23 Score=227.81 Aligned_cols=368 Identities=11% Similarity=0.096 Sum_probs=259.8
Q ss_pred HHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcC---CCCcccHHHHHHHHHhcCChHH
Q 043955 269 SASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMT---AQDFISWTTIIAGYAQNNCHLK 345 (835)
Q Consensus 269 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~ 345 (835)
..+.+.|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++... ..+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34556677777777776666553 2223344455556666666666666665543 2244556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCh-hHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 043955 346 ALELFRTVQLEGLDADV-MIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES 424 (835)
Q Consensus 346 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~ 424 (835)
|+..|+++... .|+. .++..+..++...|+++.|...+..+++..+....++..+...|...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666553 3333 24555555555566666666666666555555555555555555556666666655555432
Q ss_pred ---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHH
Q 043955 425 ---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVAS 501 (835)
Q Consensus 425 ---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 501 (835)
.+..+|+.+...|.+.|++++|+..|+++... .|+ +...+.
T Consensus 164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~ 207 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN----------------------------------FLDAYI 207 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------------------cHHHHH
Confidence 23445555555555566666666655555542 222 344567
Q ss_pred HHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccC
Q 043955 502 SLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSG 577 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g 577 (835)
.+...|.+.|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcC
Confidence 77888889999999999988654 34678899999999999999999999999998 4565 467888888999999
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 578 LINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 578 ~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
++++|..+|+.+.+. .| +...|..++.++.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.|...+
T Consensus 286 ~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988743 45 5888999999999999999999999988 5556 4668999999999999999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 655 KKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 655 ~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
+++++++|+++..|..++++|...|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=7.5e-26 Score=251.54 Aligned_cols=185 Identities=12% Similarity=0.142 Sum_probs=167.7
Q ss_pred chHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCC---------chHHHHHHHHHHHhCCCCCcc
Q 043955 24 FTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKD---------LDCGAKIHGLVLKCGYDSTDF 94 (835)
Q Consensus 24 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---------~~~a~~i~~~~~~~g~~~~~~ 94 (835)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999987664 567899999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhc---CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 043955 95 IVNSLVAMYAKCYDFRKARQLFDRM---GEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACE 171 (835)
Q Consensus 95 ~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 171 (835)
+||+||.+|++.|++++|.++|++| +..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998 4568999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 043955 172 DSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARC 208 (835)
Q Consensus 172 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 208 (835)
+.|+++.|.+++..|...|..|+..+++.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988888887653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=4.8e-23 Score=224.64 Aligned_cols=350 Identities=13% Similarity=0.073 Sum_probs=294.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCCh
Q 043955 334 IAGYAQNNCHLKALELFRTVQLEGLDADVMI-IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNI 412 (835)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~ 412 (835)
...+.+.|++++|+..+.++... .|+... +..+...+...++++.+...+..+++..+.+...+..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 44566778888888888887764 455443 344445567778888888888888888877777899999999999999
Q ss_pred hhHHHHHHhcCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhh-hHhHHHHhhcccchhhHHHHHHHH
Q 043955 413 DYSRNVFESIES--K-DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSIT-LVSALSAASSLSILKKGKELNGFI 488 (835)
Q Consensus 413 ~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~ 488 (835)
++|...|+++.. | +..+|..+..+|.+.|++++|++.|+++... .|+..+ +..+-..+...|++++|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999988753 4 4557888999999999999999999998874 566554 445556677789999999999888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH
Q 043955 489 IRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HI 564 (835)
Q Consensus 489 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~ 564 (835)
++.. +.+...++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++... ..|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHH
Confidence 8764 3357788999999999999999999999876 34677899999999999999999999999998 5675 57
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIE-PTAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~a~ 641 (835)
++..+..++...|++++|...|+.+. .+.| ++..|..++.++.+.|++++|.+.++++ ... ++..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 78889999999999999999999988 4567 4788999999999999999999999988 333 4677999999999
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...|+.+.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999887765
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=8.4e-24 Score=235.57 Aligned_cols=334 Identities=10% Similarity=0.027 Sum_probs=264.5
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDV 405 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~ 405 (835)
++..|..+...|.+.|++++|+.+|+++.... +.+..++..+..++...|+++.|...+..+++.++.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45667888888888888888888888887652 33556666777777777888888888888777777776788888888
Q ss_pred HHhcCChhhHHHHHHhcCCCC---c---hhHHHHHHH------------HHhCCChHHHHHHHHHHhhcCCcCChhhhHh
Q 043955 406 YGKCGNIDYSRNVFESIESKD---V---VSWTSMISS------------YVHNGLANEALELFYLMNEANVESDSITLVS 467 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~~~---~---~~~~~li~~------------~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ 467 (835)
|.+.|++++|.+.|+++.+.+ . ..|..++.. |.+.|++++|+..|+++... .|
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~------- 174 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CV------- 174 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT-------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC-------
Confidence 888888888888888776432 2 556655444 55666666666666666542 12
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh
Q 043955 468 ALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRG 544 (835)
Q Consensus 468 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 544 (835)
.+..++..++.+|.++|++++|.+.|+.+. ..+..+|+.++..|...|++
T Consensus 175 ---------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 175 ---------------------------WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred ---------------------------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 245667889999999999999999999876 35788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH-HHH------------HHHhcccCcHHHHHHHHHHhhhcCCCCCC-----hhHHHHHH
Q 043955 545 KVAIDLFYKMEAESFAPDHITF-LAL------------LYACSHSGLINEGKKFLEIMRCDYQLDPW-----PEHYACLV 606 (835)
Q Consensus 545 ~~Al~l~~~m~~~g~~Pd~~t~-~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv 606 (835)
++|+..|+++.. ..|+..+. ..+ ..+|.+.|++++|..+|+.+... .|+ ..+|.+++
T Consensus 228 ~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 228 ELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERIC 302 (450)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHH
Confidence 999999999997 56766543 333 68899999999999999999854 454 56899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH------------
Q 043955 607 DLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS------------ 672 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~------------ 672 (835)
+++.+.|++++|++.++++ ...| ++.+|..+..+|..+|+.+.|...++++++++|+++..+..|+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccch
Confidence 9999999999999999987 5556 5779999999999999999999999999999999999999999
Q ss_pred HHHHhcC--CchHHHHHHHHHHcCCCccCCc
Q 043955 673 NVFAASR--KWKDVEQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 673 ~~y~~~g--~~~~a~~~~~~m~~~~~~k~~g 701 (835)
+.|...| +|.+..++++.+++..++..|.
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 6788888 5555566666666655555553
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-20 Score=214.03 Aligned_cols=388 Identities=10% Similarity=-0.045 Sum_probs=299.7
Q ss_pred ccchhhhhhhccCChhHHHHHHHhcC--CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 043955 298 IGNTLMDMYAKCCCVNYMGRVFYQMT--AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGL 375 (835)
Q Consensus 298 ~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 375 (835)
.+..+...|.+.|++++|...|+++. .|+...|..+...|.+.|++++|+..|+++.... +.+...+..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888774 3577778888888888888888888888887753 22345677777778888
Q ss_pred cCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHH-----------------------------------
Q 043955 376 KCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFE----------------------------------- 420 (835)
Q Consensus 376 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~----------------------------------- 420 (835)
|+++.|...+..+.+.++.+......++..+.+......+.+.+.
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 888888888888887776544433344433333222222211110
Q ss_pred ---hcC---------CC-CchhHHHHHHHHHh---CCChHHHHHHHHHHhh-----cCCcC--------ChhhhHhHHHH
Q 043955 421 ---SIE---------SK-DVVSWTSMISSYVH---NGLANEALELFYLMNE-----ANVES--------DSITLVSALSA 471 (835)
Q Consensus 421 ---~~~---------~~-~~~~~~~li~~~~~---~g~~~~Al~lf~~m~~-----~g~~p--------~~~t~~~ll~a 471 (835)
... .| +...|......+.. .|++++|+..|+++.. ..-.| +..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 000 01 13334444444444 8999999999999987 32222 23456677778
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 043955 472 ASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAI 548 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al 548 (835)
+...|+++.|..++..+++.... ..++..+...|.+.|++++|...|+.+.. .+...|..+...|...|++++|+
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 88999999999999999987655 88889999999999999999999997653 47789999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 043955 549 DLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM- 625 (835)
Q Consensus 549 ~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 625 (835)
..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++
T Consensus 325 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 325 KDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999984 454 467888889999999999999999988754 45 4788999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHhh---cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 626 ---QIEPT----AEVWCALLGACRV---HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 626 ---~~~p~----~~~~~~ll~a~~~---~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|-.|+ ..+|..+...+.. .|+.+.|...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33333 3488899999999 99999999999999999999999999999999999999999999877665
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.8e-20 Score=210.70 Aligned_cols=270 Identities=10% Similarity=-0.067 Sum_probs=217.3
Q ss_pred HHHHHHHHHHh---cCChhhHHHHHHhcCC----------------C-CchhHHHHHHHHHhCCChHHHHHHHHHHhhcC
Q 043955 398 ILNAIVDVYGK---CGNIDYSRNVFESIES----------------K-DVVSWTSMISSYVHNGLANEALELFYLMNEAN 457 (835)
Q Consensus 398 ~~~~li~~y~k---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g 457 (835)
.+..+...+.. .|++++|...|+++.+ | +...|..+...|...|++++|+..|+++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 44444444443 7888888888876543 1 34567778888888899999999988888753
Q ss_pred CcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHH
Q 043955 458 VESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSM 534 (835)
Q Consensus 458 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~l 534 (835)
|+..++..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|+... ..+...|..+
T Consensus 268 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 268 --PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp --CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred --ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 446667777778888888888888888887653 3356788899999999999999999998764 3477899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHH
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW----PEHYACLVDLL 609 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l 609 (835)
...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.....-.|. ...|..++.++
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999884 453 467888889999999999999999988754322232 34899999999
Q ss_pred hh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 610 GR---ANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 610 ~r---~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
.+ .|++++|.+.++++ ...| +..+|..+...+...|+.+.|...++++++++|+++..+..+.
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99 99999999999987 4445 5668889999999999999999999999999999887776663
No 10
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=6.3e-16 Score=180.89 Aligned_cols=619 Identities=12% Similarity=0.081 Sum_probs=336.2
Q ss_pred cchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch-------
Q 043955 23 VFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFI------- 95 (835)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~------- 95 (835)
..-|..|++.+.+. +++.|.++-..+... .|....+..+...+...+.+.++..++-+..+.+-+.+..+
T Consensus 511 ~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~--~~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~ 587 (1630)
T 1xi4_A 511 TPDWIFLLRNVMRI-SPDQGQQFAQMLVQD--EEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEM 587 (1630)
T ss_pred CccHHHHHHHHhhc-ChHHHHHHHHHHhcC--CCCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHH
Confidence 34566777776644 477777766666554 22345566677777777777777777666666543322222
Q ss_pred ----------------------HHHHHHHHHhcCChHHHHHHHhhcCC-CC-----CeeeHHHHHHHHHhCCChhHHHHH
Q 043955 96 ----------------------VNSLVAMYAKCYDFRKARQLFDRMGE-KE-----DVVLWNSIISAYSASGQCLEALGL 147 (835)
Q Consensus 96 ----------------------~~~Li~~y~~~g~~~~A~~~f~~m~~-~~-----~~~~~n~li~~~~~~g~~~~A~~l 147 (835)
+..+...+-+.|-++.|++.++.+.. ++ ....=..|+..+. .=..+.+++.
T Consensus 588 Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg-~l~~~~s~~~ 666 (1630)
T 1xi4_A 588 NLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFG-SLSVEDSLEC 666 (1630)
T ss_pred hhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHh-cCCHHHHHHH
Confidence 33445556666777777776665411 11 1111222333333 3456677777
Q ss_pred HHHHHHCCCCCChhhHH-------------HHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 043955 148 FREMQRVGLVTNAYTFV-------------AALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEA 214 (835)
Q Consensus 148 ~~~m~~~g~~p~~~t~~-------------~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 214 (835)
+++|...+++-|-.... .++..+-+.+.++.---.++.++ .+..|+.+....|.+.++.|++.+.
T Consensus 667 l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~ev 744 (1630)
T 1xi4_A 667 LRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEV 744 (1630)
T ss_pred HHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhh
Confidence 77777655443322222 22222222222222222222221 2455788889999999999999999
Q ss_pred HHHHhcCCC---------------CCcc----------------------cHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 043955 215 AGVLYQLEN---------------KDSV----------------------SWNSMLTGFVQNDLYCKAMQFFRELQGAGQ 257 (835)
Q Consensus 215 ~~~f~~~~~---------------~d~~----------------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (835)
+++.++-.- +|.. .....|..|++.-++..+-.+...+.+.
T Consensus 745 eri~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~-- 822 (1630)
T 1xi4_A 745 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDV-- 822 (1630)
T ss_pred hHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcC--
Confidence 888766321 1111 0123345555544443333333333221
Q ss_pred CCCcch-------------HHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHH-------
Q 043955 258 KPDQVC-------------TVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGR------- 317 (835)
Q Consensus 258 ~p~~~t-------------~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~------- 317 (835)
.-+... ...++..+.+.+++......++.-+..| ..++.++|+|...|...++-.+..-
T Consensus 823 d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd 901 (1630)
T 1xi4_A 823 DCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYD 901 (1630)
T ss_pred CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCccc
Confidence 112222 3333334444444444445555555555 4567788888888876543222200
Q ss_pred ---HHHhcCCCCccc----------HHHHHHHHHhcCChHH----------------HH--------HHHHHHHH----c
Q 043955 318 ---VFYQMTAQDFIS----------WTTIIAGYAQNNCHLK----------------AL--------ELFRTVQL----E 356 (835)
Q Consensus 318 ---~f~~m~~~~~~~----------~~~li~~~~~~g~~~~----------------A~--------~~~~~m~~----~ 356 (835)
+=+-..++|+.. -.-||....+++.+.. ++ .+.++-.. .
T Consensus 902 ~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e 981 (1630)
T 1xi4_A 902 SRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSE 981 (1630)
T ss_pred HHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhccc
Confidence 000001112110 1112222222222111 00 11111111 1
Q ss_pred CCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCC---CchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHH
Q 043955 357 GLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGL---SDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSM 433 (835)
Q Consensus 357 g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l 433 (835)
...|+. .+....++...|...++.++++.++..+. ++....+.|+.+..+. +.....+..++...-+ ...+
T Consensus 982 ~~~Pee--Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eI 1055 (1630)
T 1xi4_A 982 TQDPEE--VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDI 1055 (1630)
T ss_pred ccCHHH--hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHH
Confidence 123333 34455666677777777777777774433 1233666666666666 3344444444443222 3345
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 043955 434 ISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGAL 513 (835)
Q Consensus 434 i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~ 513 (835)
...+.+.|.++||..+|++... + ......++. ..++++.|.++...+ .++.+|..+..++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~----~-~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV----N-TSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC----H-HHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 5667777788888887777521 1 111122222 455666666665543 2466677777777777777
Q ss_pred hhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------------------------CCCCHHHHH
Q 043955 514 DIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAES--------------------------FAPDHITFL 567 (835)
Q Consensus 514 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g--------------------------~~Pd~~t~~ 567 (835)
++|...|.+. .|...|..++..+.+.|++++|++.|...++.. -.|+...|.
T Consensus 1122 kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~ 1199 (1630)
T 1xi4_A 1122 KEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ 1199 (1630)
T ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHH
Confidence 7777777553 566677777777777777777777776544422 123333444
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCch
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNK 647 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~ 647 (835)
.+...|...|++++|..+|... ..|..++..|.+.|++++|.+.+++. .+..+|.....+|...|++
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHH
Confidence 5556666666666666666643 35677777777777777777777665 3456777777777777777
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 648 ELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 648 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
.+|...... +..+ +..+..+++.|.+.|.|++|.++.+
T Consensus 1267 ~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1267 RLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777766653 3333 4457789999999999999999874
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=4.2e-19 Score=202.34 Aligned_cols=191 Identities=13% Similarity=0.050 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYAC 573 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~ 573 (835)
..+..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+..++
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 334444455555555555555555433 23445566666666666666666666666655 2333 24455555556
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhc
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVH 644 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~ 644 (835)
...|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ |-.++ ...+..+...+...
T Consensus 355 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 6666666666666655532 34 2455555666666666666666665554 11111 11122233344444
Q ss_pred ----------CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 645 ----------SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 645 ----------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+.+.|...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666554443
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=5.1e-19 Score=196.76 Aligned_cols=302 Identities=10% Similarity=-0.014 Sum_probs=218.0
Q ss_pred hHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHh
Q 043955 363 MIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVH 439 (835)
Q Consensus 363 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 439 (835)
..+..+...+...|+++.|..++..+++..+.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|.+
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34444445555555555565555555555555545555555555555665555555555432 234455555555555
Q ss_pred CCChHHHHHHHHHHhhcCCcCChh----hhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhh
Q 043955 440 NGLANEALELFYLMNEANVESDSI----TLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDI 515 (835)
Q Consensus 440 ~g~~~~Al~lf~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 515 (835)
.|++++|+..|+++.. ..|+.. .+..+...+.. ..+..+...|.+.|++++
T Consensus 107 ~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp TTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCHHH
Confidence 5556666555555554 223321 22222111110 012234556889999999
Q ss_pred HHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhc
Q 043955 516 ANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCD 592 (835)
Q Consensus 516 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 592 (835)
|...|+.+. ..+...|..++..|...|++++|++.|+++.+. .+.+..++..+..++...|++++|..+|+.+.
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 238 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECL-- 238 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999999875 357889999999999999999999999999884 23356788999999999999999999999988
Q ss_pred CCCCCC-hhHHHHH------------HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCchhHHHHH
Q 043955 593 YQLDPW-PEHYACL------------VDLLGRANHLEEAYQFVRSM-QIEPT-----AEVWCALLGACRVHSNKELGEIV 653 (835)
Q Consensus 593 ~~i~p~-~~~y~~l------------v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~ 653 (835)
.+.|+ ...+..+ +.++.+.|++++|.+.++++ ...|+ ...|..+..++...|+.+.|+..
T Consensus 239 -~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 239 -KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp -HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44664 4445444 89999999999999999988 44454 34678888889999999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 654 AKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 654 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus 318 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887775
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.6e-15 Score=177.59 Aligned_cols=378 Identities=11% Similarity=0.068 Sum_probs=290.3
Q ss_pred HHHHHHHHhccCChHhHHHHHHHHHHhC--CCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcC
Q 043955 264 TVNAVSASGRLGNLLNGKELHAYAIKQG--FVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNN 341 (835)
Q Consensus 264 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 341 (835)
.....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +........++...-+ ...+...+.+.|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3556677778888888888888887332 123445566666666665 4455555555554222 455778888999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHh
Q 043955 342 CHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFES 421 (835)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~ 421 (835)
.+++|..+|++.. . .......++ ...++++.|.++...+ .+..+|..+..++.+.|++++|.+.|.+
T Consensus 1064 lyEEAf~IYkKa~----~-~~~A~~VLi---e~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD----V-NTSAVQVLI---EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred CHHHHHHHHHHcC----C-HHHHHHHHH---HHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999852 1 111112222 2667788888777644 4456999999999999999999999966
Q ss_pred cCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHH
Q 043955 422 IESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVAS 501 (835)
Q Consensus 422 ~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 501 (835)
. .|...|.-++..|.+.|++++|++.|...++.. +++...+.+..++++.+.++....+. + .++...+.
T Consensus 1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 4 778888899999999999999999999877743 44444456888899998888644442 1 33455666
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINE 581 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 581 (835)
.+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -|..+|..+-.+|...|.+..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 7999999999999999999986 48999999999999999999999987 345889999999999999999
Q ss_pred HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhc--CchhHHHHHHHHH
Q 043955 582 GKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-EVWCALLGACRVH--SNKELGEIVAKKL 657 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~--~~~~~a~~~~~~~ 657 (835)
|..+.. ++.-+++.+..++..|.+.|+++||+.+++.. .++|.. ..|.-|..++.++ +++..+.+.+..-
T Consensus 1269 A~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1269 AQMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 998765 34456788889999999999999999999877 667644 3675555554444 6777778888888
Q ss_pred HhcCC-----CCCCchHHHHHHHHhcCCchHHHH
Q 043955 658 LELDP-----GNPGNYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 658 ~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 686 (835)
+.+.| +++-.|.-+.-+|...|.|+.|..
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88877 788889999999999999999985
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=7.8e-18 Score=191.80 Aligned_cols=235 Identities=8% Similarity=-0.054 Sum_probs=172.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 043955 431 TSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARC 510 (835)
Q Consensus 431 ~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 510 (835)
..+...+...|++++|+..|++.... .|+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence 33444555556666666666666552 3444555555555566666666666666655543 23466778888999999
Q ss_pred CChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHH
Q 043955 511 GALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFL 586 (835)
Q Consensus 511 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~ 586 (835)
|++++|...|++.. ..+...|..+...|...|++++|++.|+++.+. .|+ ...+..+...+...|++++|..+|
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998765 346789999999999999999999999999984 455 457788888999999999999999
Q ss_pred HHhhhcCCCCC----ChhHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHH
Q 043955 587 EIMRCDYQLDP----WPEHYACLVDLLGRA----------NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 587 ~~m~~~~~i~p----~~~~y~~lv~~l~r~----------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a 650 (835)
+.+.+...-.+ ....+.....++.+. |++++|.+.++++ ...| +..+|..+...+...|+.+.|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 98764321111 223355567788888 9999999999987 4445 566899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchHH
Q 043955 651 EIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~ 670 (835)
...+++++++.|+++.....
T Consensus 482 ~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 482 IELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHH
Confidence 99999999999987665443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=5.1e-17 Score=174.18 Aligned_cols=312 Identities=8% Similarity=-0.026 Sum_probs=216.1
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 043955 327 FISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVY 406 (835)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y 406 (835)
+..|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|+++.|...+..+++..+.+..++..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456667777788888888888888777642 123445555555566666666666666666666655555666666666
Q ss_pred HhcCChhhHHHHHHhcCCCC------chhHHHH------------HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhH
Q 043955 407 GKCGNIDYSRNVFESIESKD------VVSWTSM------------ISSYVHNGLANEALELFYLMNEANVESDSITLVSA 468 (835)
Q Consensus 407 ~k~g~~~~A~~~f~~~~~~~------~~~~~~l------------i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~l 468 (835)
.+.|++++|...|++..+.+ ...|..+ ...+...|++++|++.|+++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------- 148 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE------------- 148 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------
Confidence 66666666666666654322 2223222 3445555555555555555544
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChH
Q 043955 469 LSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGK 545 (835)
Q Consensus 469 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 545 (835)
.. +.+..++..+...|.+.|++++|...|+.+.+ .+...|..+...|...|+++
T Consensus 149 ----------------------~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 149 ----------------------VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp ----------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred ----------------------hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 21 12345567778888888999999888887653 46778888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHH-HH------------HHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHh
Q 043955 546 VAIDLFYKMEAESFAPDHIT-FL------------ALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLG 610 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~ 610 (835)
+|+..|++..+ ..|+... +. .+...+...|++++|..+|+.+.+...-.|. ...|..++.++.
T Consensus 206 ~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999887 4555432 21 2355678889999999999888754322221 134667888899
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh
Q 043955 611 RANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA 677 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 677 (835)
+.|++++|.+.+++. ...| ++.+|..+...+...|+.+.|...++++++++|+++..+..|..++..
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999999999998887 4455 566888888888899999999999999999999988888777776553
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=2.1e-16 Score=169.38 Aligned_cols=302 Identities=10% Similarity=-0.027 Sum_probs=240.6
Q ss_pred hHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHh
Q 043955 363 MIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVH 439 (835)
Q Consensus 363 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 439 (835)
..+..+...+...|+++.|...+..+++..+.+..++..+...|...|++++|...|++..+ .+...|..+...|.+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34555666778889999999999999998888777888999999999999999999987753 356778888889999
Q ss_pred CCChHHHHHHHHHHhhcCCcC---ChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhH
Q 043955 440 NGLANEALELFYLMNEANVES---DSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIA 516 (835)
Q Consensus 440 ~g~~~~Al~lf~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 516 (835)
.|++++|+..|++.... .| +.......+. .+.. ......+...|...|++++|
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~------~~~~----------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV------KADE----------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH------HHHH----------------HHHHHHHHHHHHHTTCHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHH------HHHH----------------HHHHHHHHHHHHHccCHHHH
Confidence 99999999999998873 45 2222111111 0100 11234456788999999999
Q ss_pred HHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhc
Q 043955 517 NKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCD 592 (835)
Q Consensus 517 ~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 592 (835)
.+.|+.+. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|..+|+...+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999865 457789999999999999999999999999984 45 4567888889999999999999999988743
Q ss_pred CCCCCC-hhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHhhcCchhHHHHH
Q 043955 593 YQLDPW-PEHYA------------CLVDLLGRANHLEEAYQFVRSM-QIEPT-AE----VWCALLGACRVHSNKELGEIV 653 (835)
Q Consensus 593 ~~i~p~-~~~y~------------~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~----~~~~ll~a~~~~~~~~~a~~~ 653 (835)
.|+ ...+. .++..+.+.|++++|.+.++++ ...|+ +. .|..+..++...|+.+.|...
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 218 ---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 453 33222 3377899999999999999887 33443 32 344566788899999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 654 AKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 654 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887775
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=6.6e-18 Score=178.44 Aligned_cols=322 Identities=11% Similarity=0.012 Sum_probs=166.7
Q ss_pred hccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHH
Q 043955 307 AKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHG 386 (835)
Q Consensus 307 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 386 (835)
-+.|++++|.++++++..++ +|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 999999999999999999999975 3688899999999999999999999999
Q ss_pred HHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhH
Q 043955 387 YIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLV 466 (835)
Q Consensus 387 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~ 466 (835)
...+. .++..+.+.|+.+|.|+|+++++.++|+ .|+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 86 ~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 86 MARKK-ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 88885 4455689999999999999999998885 377789999999999999999999999987 4788
Q ss_pred hHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHH
Q 043955 467 SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKV 546 (835)
Q Consensus 467 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 546 (835)
.+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999888877 378899999999999999999988887765 455555579999999999999
Q ss_pred HHHHHHHHHHCCCCCCH---HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC------ChhHHHHHHHHHhhcCCHHH
Q 043955 547 AIDLFYKMEAESFAPDH---ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP------WPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 547 Al~l~~~m~~~g~~Pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p------~~~~y~~lv~~l~r~g~~~e 617 (835)
|+.+++..+. ..|.. .|..+++.+-.+-|.+.+..+.|.+ ..++.| +..+|.-++-+|..-|.++.
T Consensus 226 ai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999885 44543 4666777777788888888888763 337777 37789999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 618 AYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 618 A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
|...+-+-| |++.--..+.....+-.|.|.-.++..=.++-.|.
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 988776654 33222334555666677777777777766766664
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.4e-16 Score=165.64 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYA 572 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a 572 (835)
...+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|++..+ ..|+ ..++..+...
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVV 202 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Confidence 3345566666777777777777776654 23456677778888888888888888888877 3444 4567777778
Q ss_pred hcccCcHHHHHHHHHHhhhcCC-------CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQ-------LDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRV 643 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~-------i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 643 (835)
+...|++++|..+|+.+.+... .......|..++.++.+.|++++|.+.++++ ...| +..+|..+...+..
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 8888888888888877664321 1224678889999999999999999998887 3344 45688888889999
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH-hcCCc
Q 043955 644 HSNKELGEIVAKKLLELDPGNPGNYVLISNVFA-ASRKW 681 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~ 681 (835)
.|+.+.|...++++++++|+++..+..|+.+|. ..|+-
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999999999999999999999999999999884 44543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=4.3e-17 Score=172.26 Aligned_cols=221 Identities=12% Similarity=0.114 Sum_probs=70.5
Q ss_pred hcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHH
Q 043955 105 KCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHA 184 (835)
Q Consensus 105 ~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~ 184 (835)
+.|++++|.+++++++. | .+|..|..++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+.
T Consensus 15 ~~~~ld~A~~fae~~~~-~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-P--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-h--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67889999999999965 4 3899999999999999999999965 3677899999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchH
Q 043955 185 ATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCT 264 (835)
Q Consensus 185 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 264 (835)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 44577888999999999999998888864 67779999999999999999999999876 256
Q ss_pred HHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChH
Q 043955 265 VNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHL 344 (835)
Q Consensus 265 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 344 (835)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 66677777777666666666555 245556666666666666666655554433 22223334556666666666
Q ss_pred HHHHHHHHHHH
Q 043955 345 KALELFRTVQL 355 (835)
Q Consensus 345 ~A~~~~~~m~~ 355 (835)
+|+.+++....
T Consensus 225 Eai~lLe~aL~ 235 (449)
T 1b89_A 225 ELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 66666665543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=2.8e-16 Score=169.40 Aligned_cols=276 Identities=10% Similarity=-0.046 Sum_probs=211.8
Q ss_pred HhcCChhhHHH-HHHhcCC-----C--CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccch
Q 043955 407 GKCGNIDYSRN-VFESIES-----K--DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSIL 478 (835)
Q Consensus 407 ~k~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 478 (835)
.-.|++++|.. .|++... | +...|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34466777776 6664432 1 34567777788888888888888888887642 22445666667777778888
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHH---------------HHHHHHh
Q 043955 479 KKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTS---------------MINANGL 540 (835)
Q Consensus 479 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~---------------li~~~~~ 540 (835)
+.|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++.. .+...|.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888877764 33567788888899999999999999887653 22223321 1333448
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPD---HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLE 616 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~ 616 (835)
.|++++|+..|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.. +.| +...|..++.++.+.|+++
T Consensus 194 ~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 194 DSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHcCCHH
Confidence 8999999999999998 4555 67888899999999999999999998874 356 4789999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC-----------CCchHHHHHHHHhcCCchH
Q 043955 617 EAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN-----------PGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 617 eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~~~~ 683 (835)
+|.+.++++ ...| +..+|..+..++...|+.+.|...+++++++.|++ +..|..|+.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 4455 56789999999999999999999999999999988 7789999999999999999
Q ss_pred HHHHHH
Q 043955 684 VEQVRM 689 (835)
Q Consensus 684 a~~~~~ 689 (835)
|..+.+
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 998865
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.70 E-value=2.3e-15 Score=159.16 Aligned_cols=260 Identities=11% Similarity=0.039 Sum_probs=199.0
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
++..+..+...+...|++++|+++|+++.... ..+...+..+...+...|+.+.+..++..+++.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33344444555555555555555555555421 1122233334444455555555555555555432 224566778888
Q ss_pred HHHhcC-ChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHH
Q 043955 506 MYARCG-ALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLIN 580 (835)
Q Consensus 506 ~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~ 580 (835)
.|...| ++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+. .|+ ...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHH
Confidence 999999 99999999987653 46789999999999999999999999999984 454 456777888899999999
Q ss_pred HHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHhhcCchh
Q 043955 581 EGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI----------EPTAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~----------~p~~~~~~~ll~a~~~~~~~~ 648 (835)
+|..+|+... .+.| +...+..++.++.+.|++++|.+.++++ .. +.++.+|..+..++...|+.+
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999887 5567 4788999999999999999999999876 11 234568999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.|...++++++++|+++..+..++.+|...|++++|.+..+...
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=2.1e-14 Score=163.08 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCC--C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-h
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQT--K-DL-ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYA-C 573 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~-~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a-~ 573 (835)
+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...+...... +
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHH
Confidence 44555556666666666666665442 2 32 47888888888888888888888888874 343 2223322222 2
Q ss_pred cccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCc
Q 043955 574 SHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT--AEVWCALLGACRVHSN 646 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--~~~~~~ll~a~~~~~~ 646 (835)
...|+.++|+.+|+...+. .| ++..|..+++++.+.|+.++|..++++. |..|+ ..+|...+.....+|+
T Consensus 402 ~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3589999999999987744 46 4788899999999999999999999887 44453 4489999998999999
Q ss_pred hhHHHHHHHHHHhcCCCC
Q 043955 647 KELGEIVAKKLLELDPGN 664 (835)
Q Consensus 647 ~~~a~~~~~~~~~l~p~~ 664 (835)
.+.+..+.+++.+..|++
T Consensus 479 ~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 479 LASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHCchh
Confidence 999999999999999953
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=5.2e-14 Score=159.77 Aligned_cols=388 Identities=10% Similarity=0.044 Sum_probs=248.7
Q ss_pred cccchhhhhhhccCChhHHHHHHHhcCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-h
Q 043955 297 QIGNTLMDMYAKCCCVNYMGRVFYQMTAQ---DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMA-C 372 (835)
Q Consensus 297 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~ 372 (835)
..|..++. +.+.|+++.|..+|+++... +...|...+..+.+.|++++|..+|++.+... |+...+...+.. .
T Consensus 14 ~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 14 DAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHH
Confidence 34444444 24445555555555555332 33446666666666666666666666665532 444333333321 1
Q ss_pred ccccCchHHHH----HHHHHHHh-CC--CchhHHHHHHHHHHh---------cCChhhHHHHHHhcCC-CCc---hhHHH
Q 043955 373 SGLKCMSQTKE----IHGYIIRK-GL--SDLVILNAIVDVYGK---------CGNIDYSRNVFESIES-KDV---VSWTS 432 (835)
Q Consensus 373 ~~~~~~~~~~~----i~~~~~~~-~~--~~~~~~~~li~~y~k---------~g~~~~A~~~f~~~~~-~~~---~~~~~ 432 (835)
...++.+.+++ ++..+++. |. .+..+|...+....+ .|+++.|+++|++... |+. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 22344444433 44444432 32 233366666665544 5677777777776543 211 23332
Q ss_pred HHHHH-------------HhCCChHHHHHHHHHH------hhcC---CcCCh--------hhhHhHHHHhhc----ccch
Q 043955 433 MISSY-------------VHNGLANEALELFYLM------NEAN---VESDS--------ITLVSALSAASS----LSIL 478 (835)
Q Consensus 433 li~~~-------------~~~g~~~~Al~lf~~m------~~~g---~~p~~--------~t~~~ll~a~~~----~~~~ 478 (835)
...-. .+.+++.+|..++.++ .... +.|+. ..|...+.-... .++.
T Consensus 171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~ 250 (530)
T 2ooe_A 171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQ 250 (530)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCS
T ss_pred HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcc
Confidence 21110 1234567777777653 2211 23331 122222221111 1222
Q ss_pred ----hhHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCChh-------hHHHHhhhCCC---C-ChhHHHHHHH
Q 043955 479 ----KKGKELNGFIIRKGFNLEGSVASSLVDMYAR-------CGALD-------IANKVFNCVQT---K-DLILWTSMIN 536 (835)
Q Consensus 479 ----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~f~~~~~---~-~~~~~~~li~ 536 (835)
+.+..++..+++.. +.++.++..++..+.+ .|+++ +|+.+|++..+ | +...|..++.
T Consensus 251 ~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 251 TLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 25556777777652 3467788888888876 79987 89999997653 3 5789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHH-Hhhc
Q 043955 537 ANGLHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDL-LGRA 612 (835)
Q Consensus 537 ~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~-l~r~ 612 (835)
.+.+.|+.++|.++|+++++ +.|+. ..|...+..+.+.|.+++|+.+|+...+ ..|. ...|...+.+ +...
T Consensus 330 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHc
Confidence 99999999999999999998 67764 4688888888899999999999998874 3453 3444433333 3468
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC----chHHHHHHHHhcCCchHHHH
Q 043955 613 NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG----NYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 613 g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~ 686 (835)
|+.++|.+++++. ...| ++.+|..++......|+.+.|+.+++++++..|.++. .|..........|+.+++.+
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999977 3345 5779999999999999999999999999999887765 56666778888999999999
Q ss_pred HHHHHHc
Q 043955 687 VRMRMRG 693 (835)
Q Consensus 687 ~~~~m~~ 693 (835)
+.+.+.+
T Consensus 485 ~~~r~~~ 491 (530)
T 2ooe_A 485 VEKRRFT 491 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887765
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.4e-15 Score=157.55 Aligned_cols=242 Identities=8% Similarity=-0.029 Sum_probs=182.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchh
Q 043955 400 NAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILK 479 (835)
Q Consensus 400 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 479 (835)
..+...|...|+++.|...++....|+..++..+...+...|+.++|++.|+++...+..|+.
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~----------------- 100 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN----------------- 100 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC-----------------
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC-----------------
Confidence 334556666666666666665544445555666666666666677777777766655444543
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESF 559 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 559 (835)
..++..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|+.++|++.|+++.+.
T Consensus 101 -----------------~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 101 -----------------TTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred -----------------HHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 33456677888999999999999999 568889999999999999999999999999984
Q ss_pred CCCHHHH---HHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 043955 560 APDHITF---LALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEV 633 (835)
Q Consensus 560 ~Pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~ 633 (835)
.|+.... .+.+..+...|++++|..+|+.+.+. .| ++..|..++.++.+.|++++|++.++++ ...| ++.+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5775421 12233344669999999999999865 45 6888999999999999999999999987 5566 5668
Q ss_pred HHHHHHHHhhcCchhH-HHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHH
Q 043955 634 WCALLGACRVHSNKEL-GEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 634 ~~~ll~a~~~~~~~~~-a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 686 (835)
|..+...+...|+.+. +...++++++++|+++.. .+++.+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 9999988888888865 678999999999998654 345666666666543
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=2.4e-15 Score=162.02 Aligned_cols=264 Identities=11% Similarity=0.041 Sum_probs=168.7
Q ss_pred HHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHH
Q 043955 370 MACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEA 446 (835)
Q Consensus 370 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 446 (835)
..+...|+++.|...+..+++..+.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|...|++++|
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3333344444444444444444444445677777788888888888888876642 4667888888889999999999
Q ss_pred HHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-
Q 043955 447 LELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT- 525 (835)
Q Consensus 447 l~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~- 525 (835)
+..|+++... .|+.......+...... ..+ ......+...+ +.|++++|...|+++.+
T Consensus 152 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 152 CEILRDWLRY--TPAYAHLVTPAEEGAGG-----------------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp HHHHHHHHHT--STTTGGGCC---------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcCcHHHHHHHHHHhhh-----------------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHh
Confidence 9999988874 34433222111000000 000 00111222223 66777777777766541
Q ss_pred -C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-Ch
Q 043955 526 -K---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WP 599 (835)
Q Consensus 526 -~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~ 599 (835)
| +..+|..+...|...|++++|+..|+++.. ..|+ ..++..+...+...|++++|..+|+.+.+ +.| +.
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~ 285 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYI 285 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcH
Confidence 2 456777777777788888888888888776 3444 45677777777788888888888877763 345 46
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-QIEP------------TAEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p------------~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
..|..++.++.+.|++++|.+.++++ .+.| ...+|..|..++...|+.+.|..+.++.++
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 77778888888888888888877766 2222 156788888888888888888887776654
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=1e-13 Score=155.71 Aligned_cols=351 Identities=9% Similarity=-0.051 Sum_probs=245.2
Q ss_pred cCChhHHHHHHHhcCC-CCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc----ccCch
Q 043955 309 CCCVNYMGRVFYQMTA-QDFISWTTIIAGYAQ----NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSG----LKCMS 379 (835)
Q Consensus 309 ~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~ 379 (835)
.++++.|...|++..+ .+...+..|...|.. .+++++|+..|++....| +...+..+-..+.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4555555555554432 244455555556665 666666666666666544 23333333334433 55666
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHh----cCChhhHHHHHHhcCC-CCchhHHHHHHHHHh----CCChHHHHHHH
Q 043955 380 QTKEIHGYIIRKGLSDLVILNAIVDVYGK----CGNIDYSRNVFESIES-KDVVSWTSMISSYVH----NGLANEALELF 450 (835)
Q Consensus 380 ~~~~i~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~Al~lf 450 (835)
.|...+....+.+ +......|..+|.. .++.++|.+.|++..+ .+..++..+...|.+ .+++++|++.|
T Consensus 133 ~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 133 ESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 6666666666654 23355666666666 6677777777776543 456667777777776 77788888888
Q ss_pred HHHhhcCCcCChhhhHhHHHHhhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChhhHHHHhhh
Q 043955 451 YLMNEANVESDSITLVSALSAASS----LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYAR----CGALDIANKVFNC 522 (835)
Q Consensus 451 ~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~ 522 (835)
++....| +...+..+-..+.. .++.+.|..++....+.| +......|..+|.+ .++.++|.+.|+.
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 8777654 33344444444433 567777777777776654 45566777788887 8999999999988
Q ss_pred CCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhhhcC
Q 043955 523 VQT-KDLILWTSMINANGLH-----GRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG---LINEGKKFLEIMRCDY 593 (835)
Q Consensus 523 ~~~-~~~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~ 593 (835)
..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|+...+.
T Consensus 285 a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 285 SAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 764 4677888888888877 89999999999999864 3445556666666656 789999999987743
Q ss_pred CCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCchhHHHHHHHHHHhcCCC--
Q 043955 594 QLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSMQIEPTAEVWCALLGACRV----HSNKELGEIVAKKLLELDPG-- 663 (835)
Q Consensus 594 ~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~-- 663 (835)
.++..+..+..+|.. .+++++|.+.+++.--..++..|..|...+.. .+|.+.|...++++++.+|+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 357788889999988 89999999999987323467788888888877 89999999999999999954
Q ss_pred -CCCchHHHHHHHHh
Q 043955 664 -NPGNYVLISNVFAA 677 (835)
Q Consensus 664 -~~~~~~~l~~~y~~ 677 (835)
++.....|+.++..
T Consensus 438 ~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 438 GTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHhcCHh
Confidence 77777778777764
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=2e-15 Score=162.51 Aligned_cols=255 Identities=10% Similarity=-0.071 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMY 507 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 507 (835)
..|..+...+.+.|++++|+.+|+++.... +.+..++..+...+...|+++.|...+..+++.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554421 1123344444444445555555555555544432 22355677778888
Q ss_pred HhcCChhhHHHHhhhCCCC---C----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 043955 508 ARCGALDIANKVFNCVQTK---D----------LILWTSMINANGLHGRGKVAIDLFYKMEAESFAP---DHITFLALLY 571 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~~~---~----------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P---d~~t~~~ll~ 571 (835)
.+.|++++|...|+++.+. + ...++.+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHH
Confidence 8888888888888776532 1 223445588889999999999999999984 45 4678888889
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~ 648 (835)
.+...|++++|..+|+.+.+ +.| +...|..++.+|.+.|++++|++.++++ ...| ++.+|..+..++...|+.+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALT---VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999998874 356 5788999999999999999999999887 4556 4678999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------------CCchHHHHHHHHhcCCchHHHHHHH
Q 043955 649 LGEIVAKKLLELDPGN------------PGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~------------~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
.|...+++++++.|++ ...|..|+.+|...|+.+.+.++.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999873 5668899999999999999887754
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=181.27 Aligned_cols=128 Identities=14% Similarity=0.152 Sum_probs=111.4
Q ss_pred CCCchhHHHHHHHHHHhcCChhhHHHHhhhCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 043955 493 FNLEGSVASSLVDMYARCGALDIANKVFNCVQ-------TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHIT 565 (835)
Q Consensus 493 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t 565 (835)
...-..++|+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33345689999999999999999999997653 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCc-HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 043955 566 FLALLYACSHSGL-INEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQF 621 (835)
Q Consensus 566 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~ 621 (835)
|+++|.++++.|. .++|.++|+.|... |+.||..+|+|+++...|.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999987 57899999999877 9999999999999888877655555444
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=8.2e-17 Score=182.82 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=108.2
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhh---cCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNE---ANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSL 503 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~---~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 503 (835)
.++||+||.+|++.|+.++|.++|.+|.+ .|+.||.+|| |+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY-----------------------------------NtL 171 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY-----------------------------------NAV 171 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH-----------------------------------HHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH-----------------------------------HHH
Confidence 36899999999999999999999988764 4566666655 555
Q ss_pred HHHHHhcCChhhHHHHhhhCC----CCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc
Q 043955 504 VDMYARCGALDIANKVFNCVQ----TKDLILWTSMINANGLHGRG-KVAIDLFYKMEAESFAPDHITFLALLYACSHSGL 578 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~-~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 578 (835)
|++|++.|++++|.++|++|. .||++|||+||.++++.|+. ++|.++|++|.+.|+.||.+||+++++++.+.+.
T Consensus 172 I~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v 251 (1134)
T 3spa_A 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251 (1134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH
Confidence 556666666666666666664 46777888888888888874 6889999999999999999999999987776655
Q ss_pred HHHHHHHHHHhhhcCCCCC----ChhHHHHHHHHHhhcC
Q 043955 579 INEGKKFLEIMRCDYQLDP----WPEHYACLVDLLGRAN 613 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p----~~~~y~~lv~~l~r~g 613 (835)
++...++ ..+|...| ...+-.-|.|+|.+.|
T Consensus 252 L~~Vrkv----~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 252 LKAVHKV----KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHGGG----CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHh----CcccCCCCCCcccccchHHHHHHHccCC
Confidence 5544443 33333332 2344455788888776
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=1.7e-14 Score=149.36 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=187.4
Q ss_pred HHHhcCChhhHHHHHHhcCCCCc----hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhh
Q 043955 405 VYGKCGNIDYSRNVFESIESKDV----VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKK 480 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 480 (835)
-....|++..|...++.....++ ...-.+..+|...|++++|+..++.. .
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~--------------------- 61 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----S--------------------- 61 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----S---------------------
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----C---------------------
Confidence 34456777777777776654332 23344566777777777777654321 1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 481 GKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ----TK-DLILWTSMINANGLHGRGKVAIDLFYKME 555 (835)
Q Consensus 481 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~-~~~~~~~li~~~~~~g~~~~Al~l~~~m~ 555 (835)
.|+......+...|.+.|+.++|.+.|+++. .| +...|..+...|.+.|++++|++.|++
T Consensus 62 -------------~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 62 -------------APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp -------------CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred -------------ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 2234455677888999999999999998763 24 567788888999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChh---HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCC
Q 043955 556 AESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE---HYACLVDLLGRANHLEEAYQFVRSM-Q-IEPT 630 (835)
Q Consensus 556 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~---~y~~lv~~l~r~g~~~eA~~~~~~m-~-~~p~ 630 (835)
.++...+..+...+...|++++|.+.|+.+.+. .|+.. ...+++.++...|++++|++.++++ . .+++
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 355677888888999999999999999999854 46532 2234556666779999999999998 2 3347
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH-HHHHHHHHHc
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD-VEQVRMRMRG 693 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~ 693 (835)
+.+|+.+..++...|+.+.|+..++++++++|+++.++..++.++...|++++ +.+.++.+.+
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999987 4677766654
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=7e-14 Score=156.21 Aligned_cols=360 Identities=12% Similarity=0.017 Sum_probs=201.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCC-ChhHHHHHHHHhccccCchHHHHHHHHHHHhC--------
Q 043955 329 SWTTIIAGYAQNNCHLKALELFRTVQLE-------GLDA-DVMIIGSVLMACSGLKCMSQTKEIHGYIIRKG-------- 392 (835)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~-------- 392 (835)
.||.|...+...|++++|++.|++..+. ...| ...+|..+-.++...|+++.|...+..+.+..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3455555555555555555555543321 0112 12344555555555555555555555444321
Q ss_pred CCchhHHHHHHHHHHhcC--ChhhHHHHHHhcCC--C-CchhHHHHHHH---HHhCCChHHHHHHHHHHhhcCCcCCh-h
Q 043955 393 LSDLVILNAIVDVYGKCG--NIDYSRNVFESIES--K-DVVSWTSMISS---YVHNGLANEALELFYLMNEANVESDS-I 463 (835)
Q Consensus 393 ~~~~~~~~~li~~y~k~g--~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~Al~lf~~m~~~g~~p~~-~ 463 (835)
+....++..+...+.+.| ++++|...|++..+ | ++..+..+... +...++.++|++.|++... +.|+. .
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~--l~p~~~~ 210 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--LNPDNQY 210 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH--HCSSCHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--cCCcchH
Confidence 011224444444444433 46677777766542 3 33344444333 2345666677777776665 23433 2
Q ss_pred hhHhHHHHhh----cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHH
Q 043955 464 TLVSALSAAS----SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMIN 536 (835)
Q Consensus 464 t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~ 536 (835)
++..+...+. ..++.+.+.+++..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 2322222222 2356667777776666553 2345667778888888888888888887655 234556666665
Q ss_pred HHHhc-------------------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCC
Q 043955 537 ANGLH-------------------GRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLD 596 (835)
Q Consensus 537 ~~~~~-------------------g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 596 (835)
.|... +..++|+..|++..+ ..|+. .++..+...+...|++++|..+|+.... +.
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~ 364 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS---KE 364 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cC
Confidence 55332 235778888888877 45554 4677788889999999999999988763 34
Q ss_pred CChh----HHHHHHHH-HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 597 PWPE----HYACLVDL-LGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 597 p~~~----~y~~lv~~-l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
|+.. .+..+..+ +...|+.++|++.+++. .+.|+...+... .+.++..+++.++.+|+++.+|..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4322 23334433 45789999999998877 677776554333 344567788899999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEE
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWI 705 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i 705 (835)
|+.+|...|++++|.+..++.-+.+-.-....+|+
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999887766554332334554
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=1.8e-14 Score=155.00 Aligned_cols=266 Identities=12% Similarity=0.006 Sum_probs=175.0
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDV 405 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~ 405 (835)
+...|..+...+.+.|++++|+..|+++... .+.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----------------------------------~p~~~~~~~~lg~~ 108 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ-----------------------------------DPGDAEAWQFLGIT 108 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------------------CcCCHHHHHHHHHH
Confidence 4455777777777777777777777776653 23334467777888
Q ss_pred HHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHH
Q 043955 406 YGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGK 482 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 482 (835)
|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..|+++... .|+.......+.
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~------------ 174 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK------------ 174 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-----------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhc------------
Confidence 8888888888888887653 45678888888999999999999999998873 343322111000
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043955 483 ELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--K---DLILWTSMINANGLHGRGKVAIDLFYKMEAE 557 (835)
Q Consensus 483 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 557 (835)
....++..+...|.+.|++++|.+.|+++.+ | +..+|..+...|...|++++|++.|+++.+.
T Consensus 175 ------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 175 ------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1122334455666667777777777765542 2 4667777777777777777777777777763
Q ss_pred CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----
Q 043955 558 SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP----- 629 (835)
Q Consensus 558 g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p----- 629 (835)
.|+ ..++..+..++...|++++|..+|+.+.+ +.|+ ...|..++.+|.+.|++++|.+.++++ .+.|
T Consensus 243 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 243 --RPEDYSLWNRLGATLANGDRSEEAVEAYTRALE---IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 443 45677777777777777777777777663 3563 677777778888888888887777766 1111
Q ss_pred --------CHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 043955 630 --------TAEVWCALLGACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 630 --------~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 657 (835)
+..+|..|..++...|+.+.++.+.++.
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 2457888888888888888877776653
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=1.9e-14 Score=151.92 Aligned_cols=251 Identities=13% Similarity=0.011 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASS 474 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~ 474 (835)
.+..+...+.+.|++++|...|+++.+ .+...|..+...|.+.|++++|+..|+++... .|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~-------------- 86 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DP-------------- 86 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Cc--------------
Confidence 344455555555566655555555432 23445555555555555555555555555542 12
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHH--------------HH-
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSM--------------IN- 536 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l--------------i~- 536 (835)
.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+ ..
T Consensus 87 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 87 --------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 2344556666777777777777777766542 223333333 22
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC
Q 043955 537 ANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH 614 (835)
Q Consensus 537 ~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~ 614 (835)
.+...|++++|++.|+++.+. .| +..++..+...+...|++++|..+|+.+.+ +.| +...+..++.++.+.|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCC
Confidence 377889999999999999884 44 567788888899999999999999998874 356 47889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC------------CCCchHHHHHHHHhcCC
Q 043955 615 LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG------------NPGNYVLISNVFAASRK 680 (835)
Q Consensus 615 ~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~ 680 (835)
+++|.+.++++ ...| +..+|..+...+...|+.+.|...+++++++.|+ ++..+..++.+|...|+
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99999999887 4445 5678999999999999999999999999999999 78889999999999999
Q ss_pred chHHHHHHH
Q 043955 681 WKDVEQVRM 689 (835)
Q Consensus 681 ~~~a~~~~~ 689 (835)
+++|.++.+
T Consensus 302 ~~~A~~~~~ 310 (327)
T 3cv0_A 302 PDLVELTYA 310 (327)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999988764
No 34
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.60 E-value=2.2e-12 Score=144.68 Aligned_cols=352 Identities=12% Similarity=-0.029 Sum_probs=285.7
Q ss_pred CCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc----ccCchHHHHHHHHHHHhCCCc
Q 043955 324 AQDFISWTTIIAGYAQ----NNCHLKALELFRTVQLEGLDADVMIIGSVLMACSG----LKCMSQTKEIHGYIIRKGLSD 395 (835)
Q Consensus 324 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~~~~i~~~~~~~~~~~ 395 (835)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.+ +
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--L 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C
Confidence 3466677777777887 899999999999998864 44455556566666 889999999999998876 4
Q ss_pred hhHHHHHHHHHHh----cCChhhHHHHHHhcCCC-CchhHHHHHHHHHh----CCChHHHHHHHHHHhhcCCcCChhhhH
Q 043955 396 LVILNAIVDVYGK----CGNIDYSRNVFESIESK-DVVSWTSMISSYVH----NGLANEALELFYLMNEANVESDSITLV 466 (835)
Q Consensus 396 ~~~~~~li~~y~k----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~Al~lf~~m~~~g~~p~~~t~~ 466 (835)
......|..+|.. .++.++|...|++..+. ++.++..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4567778889988 88999999999987654 66778888888887 789999999999998865 455555
Q ss_pred hHHHHhhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChhhHHHHhhhCCC-CChhHHHHHHHH
Q 043955 467 SALSAASS----LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYAR----CGALDIANKVFNCVQT-KDLILWTSMINA 537 (835)
Q Consensus 467 ~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~ 537 (835)
.+-..+.. .++.++|..++....+.| ++.....|..+|.. .++.++|.+.|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555 789999999999998876 56778889999987 8899999999998664 467788888888
Q ss_pred HHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc-----CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 043955 538 NGL----HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHS-----GLINEGKKFLEIMRCDYQLDPWPEHYACLVDL 608 (835)
Q Consensus 538 ~~~----~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 608 (835)
|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. + +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998764 344555666666666 8999999999987643 2 45677888888
Q ss_pred HhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh----
Q 043955 609 LGRAN---HLEEAYQFVRSMQIEPTAEVWCALLGACRV----HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA---- 677 (835)
Q Consensus 609 l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 677 (835)
|.+.| ++++|.+.+++.--..++..|..|...+.. .+|.+.|...++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 889999999988323577888889888887 799999999999999864 57889999999998
Q ss_pred cCCchHHHHHHHHHHcCC
Q 043955 678 SRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 678 ~g~~~~a~~~~~~m~~~~ 695 (835)
.++.++|.+..++..+.+
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999988777654
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=1.7e-13 Score=144.57 Aligned_cols=274 Identities=11% Similarity=-0.010 Sum_probs=160.5
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHH
Q 043955 326 DFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDV 405 (835)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~ 405 (835)
+...|..+...+.+.|++++|+.+|+++.... +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~ 64 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-----------------------------------PEREEAWRSLGLT 64 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHHH
Confidence 45567777777888888888888887776542 2233355556666
Q ss_pred HHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHH-HHhhcccchhhH
Q 043955 406 YGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSAL-SAASSLSILKKG 481 (835)
Q Consensus 406 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a 481 (835)
|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+++... .|+.......+ ..+
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~--------- 133 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQAD--------- 133 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC-----------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH---------
Confidence 7777777777777776542 35567777788888888888888888888763 34433322222 000
Q ss_pred HHHHHHHHHhCCCCchhHHHHH-HH-HHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 482 KELNGFIIRKGFNLEGSVASSL-VD-MYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 482 ~~i~~~~~~~g~~~~~~~~~~l-i~-~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
++......+ .. .|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+
T Consensus 134 -------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 134 -------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp -------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 000000111 11 1344455555555554433 22455566666666666666666666666665
Q ss_pred CCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---
Q 043955 557 ESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT--- 630 (835)
Q Consensus 557 ~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~--- 630 (835)
. .|+ ..++..+...+...|++++|..+|+.+.+ +.| +...+..++.++.+.|++++|.+.++++ ...|+
T Consensus 201 ~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 275 (327)
T 3cv0_A 201 L--RPDDAQLWNKLGATLANGNRPQEALDAYNRALD---INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275 (327)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred h--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccc
Confidence 2 333 34555666666666666666666666553 234 3556666666666777777777666655 22232
Q ss_pred ----------HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 631 ----------AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 631 ----------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
..+|..+..++...|+.+.|...++++++..|+
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 276 PTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred ccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 446666777777777777777777766665554
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=4.5e-13 Score=149.66 Aligned_cols=380 Identities=8% Similarity=-0.077 Sum_probs=224.4
Q ss_pred cchHHHHHHHHhccCChHhHHHHHHHHHHh-----CC--Cc-cccccchhhhhhhccCChhHHHHHHHhcCC-------C
Q 043955 261 QVCTVNAVSASGRLGNLLNGKELHAYAIKQ-----GF--VS-DLQIGNTLMDMYAKCCCVNYMGRVFYQMTA-------Q 325 (835)
Q Consensus 261 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~--~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------~ 325 (835)
...|+.+-..+...|+.++|.+.+...++. +. .| ...+++.+...|...|++++|...|++... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456888888888999999999999887653 11 12 234567788888889999999888776521 1
Q ss_pred ----CcccHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhH-HHHHHHH---hccccCchHHHHHHHHHHHhCCCc
Q 043955 326 ----DFISWTTIIAGYAQ--NNCHLKALELFRTVQLEGLDADVMI-IGSVLMA---CSGLKCMSQTKEIHGYIIRKGLSD 395 (835)
Q Consensus 326 ----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a---~~~~~~~~~~~~i~~~~~~~~~~~ 395 (835)
...+++.+..++.. .+++++|++.|++.... .|+... +..+..+ +...+..+.+.+.+..+++..+.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 22345544445544 34688999999888774 455433 2222222 345567778888888888888877
Q ss_pred hhHHHHHHHHHHh----cCChhhHHHHHHhcC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhH
Q 043955 396 LVILNAIVDVYGK----CGNIDYSRNVFESIE---SKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSA 468 (835)
Q Consensus 396 ~~~~~~li~~y~k----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~l 468 (835)
..++..+...+.. .|+.++|.+.|++.. ..+...|+.+...|.+.|++++|+..|.+..+ ..|+......-
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE--YIPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCChHHHHHH
Confidence 6666666555544 456788888887654 34566788888889999999999999998877 35654332211
Q ss_pred HH-HhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh
Q 043955 469 LS-AASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRG 544 (835)
Q Consensus 469 l~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 544 (835)
+. .+... +... ... ....+.......+..+.|...|+... ..+..+|..+...|...|++
T Consensus 287 lg~~y~~~-----~~~~----~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAK-----VFQV----MNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHH-----HHHH----HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHH-----HHHh----hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 11 11110 0000 000 00011111112234567777777654 44677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 043955 545 KVAIDLFYKMEAESFAPDHI--TFLALLY-ACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQF 621 (835)
Q Consensus 545 ~~Al~l~~~m~~~g~~Pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~ 621 (835)
++|++.|++.++....|... .+..+.. ...+.|+.++|+..|+... .+.|+..... +.++.+.++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~---------~~~~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKE---------KMKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHH---------HHHHHHHHH
Confidence 99999999999854333321 2222222 3457899999999998776 5667532222 222333444
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 622 VRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 622 ~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
+++. ...| ++.+|..|..++...|+.+.|+..+++++++.|.+|.++.-++
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4433 2334 5668999999999999999999999999999999888765554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=5.9e-14 Score=138.64 Aligned_cols=191 Identities=14% Similarity=0.048 Sum_probs=158.7
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 043955 494 NLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLAL 569 (835)
Q Consensus 494 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~l 569 (835)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|+.++|+..|++..+ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 34666778889999999999999999997653 4678999999999999999999999999998 56765 567788
Q ss_pred HHHhccc-----------CcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 043955 570 LYACSHS-----------GLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCA 636 (835)
Q Consensus 570 l~a~~~~-----------g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ 636 (835)
..++... |++++|...|+... .+.| +...+..+..+|.+.|++++|++.++++ .+..++.+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAE---RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 99999999999887 4578 4888999999999999999999999987 22277889999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 637 LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+..++...|+.+.|+..++++++++|+++..+..++.+|...|++++|.+..+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987765
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.7e-13 Score=135.73 Aligned_cols=217 Identities=14% Similarity=0.014 Sum_probs=174.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043955 428 VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMY 507 (835)
Q Consensus 428 ~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 507 (835)
..|..+...+...|++++|+..|++..... ++. .++..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~-----------------------------------~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDI-----------------------------------TYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCT-----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccH-----------------------------------HHHHHHHHHH
Confidence 467777788888888888888888887654 333 3445566666
Q ss_pred HhcCChhhHHHHhhhCCC--C-C-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 043955 508 ARCGALDIANKVFNCVQT--K-D-------LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG 577 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~~--~-~-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 577 (835)
.+.|++++|...|+...+ | + ...|..+...|...|++++|+..|+++.. +.|+.. .+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHh
Confidence 677777777777765542 1 1 57888899999999999999999999988 567643 345668
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 578 LINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 578 ~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
++++|...++.+.. ..| +...|..++.++.+.|++++|.+.++++ ...| ++.+|..+...+...|+.+.|...+
T Consensus 120 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999998873 466 4778889999999999999999999887 4444 5678999999999999999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 655 KKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 655 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998776554
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.9e-13 Score=136.27 Aligned_cols=238 Identities=10% Similarity=-0.031 Sum_probs=182.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChh-hhHhHHHHhh
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIES--KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSI-TLVSALSAAS 473 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~-t~~~ll~a~~ 473 (835)
..+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..... |+.. .+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccchH-------
Confidence 3788899999999999999999987632 678889999999999999999999999987632 2210 000
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
....++..+...|.+.|++++|...|++....+.. ...+...|+.++|+..+++
T Consensus 77 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 77 ---------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHH
Confidence 01344566777777888888888888766531111 2346667888899999998
Q ss_pred HHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 043955 554 MEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP- 629 (835)
Q Consensus 554 m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p- 629 (835)
+.. ..|+. ..+..+...+...|++++|..+|+.+.. +.| +...|..++.++.+.|++++|.+.++++ ...|
T Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 131 EAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 887 45654 4577777788889999999999988774 345 4788888999999999999999998887 4445
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcC------CCCCCchHHHHHH
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELD------PGNPGNYVLISNV 674 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~ 674 (835)
++.+|..+..++...|+.+.|...++++++++ |++...+..|+.+
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 46688888889999999999999999999999 7776666655543
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=4.3e-13 Score=137.48 Aligned_cols=245 Identities=13% Similarity=0.016 Sum_probs=159.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASS 474 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~ 474 (835)
+.......|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++....+ ++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~---------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA---------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH----------
Confidence 344566677778888888888877643 245577777777888888888888888777632 22211
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHH
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLF 551 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~ 551 (835)
....+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 11234556666667777777777776554 235567777777777777777777777
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCC---HHHHHHHHHhC-
Q 043955 552 YKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANH---LEEAYQFVRSM- 625 (835)
Q Consensus 552 ~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~---~~eA~~~~~~m- 625 (835)
++..+ ..|+.. .+..+...+...+++++|..+|+.+.+ +.|+ ...+..++.++...|+ +++|...++++
T Consensus 132 ~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 132 EKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 77766 355443 344444245555577788887777663 3453 5666667777776676 55566555554
Q ss_pred ---CCCCC------HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 626 ---QIEPT------AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 626 ---~~~p~------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
.-.|+ ..+|..|...+...|+.+.|...++++++++|+++.++-.+..+....+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 11233 24677788888899999999999999999999998888877776655443
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=8.7e-13 Score=141.25 Aligned_cols=240 Identities=8% Similarity=0.008 Sum_probs=186.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCC-hHHHHHHHHHHhhcCCcCChhhhHhHHHHhh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGL-ANEALELFYLMNEANVESDSITLVSALSAAS 473 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~ 473 (835)
+++.+...|.+.|++++|...|++... .+...|+.+...+.+.|+ +++|+..|++... +.|+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~--l~P~------------ 164 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPK------------ 164 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--HCCC------------
Confidence 566666777777777777777776643 355677777777777775 8888888877776 3343
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDL 550 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l 550 (835)
+..+++.+...|.+.|++++|...|+++. ..+...|..+..++...|++++|+..
T Consensus 165 ----------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 165 ----------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHH
Confidence 34456777778888899999999998765 45788999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhcc-cCcHHHH-----HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC--CHHHHHH
Q 043955 551 FYKMEAESFAPDH-ITFLALLYACSH-SGLINEG-----KKFLEIMRCDYQLDP-WPEHYACLVDLLGRAN--HLEEAYQ 620 (835)
Q Consensus 551 ~~~m~~~g~~Pd~-~t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g--~~~eA~~ 620 (835)
|+++++ +.|+. ..|..+..++.. .|..++| +.+|+... .+.| +...|..+..+|.+.| ++++|++
T Consensus 223 ~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 223 VDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHccCccchHHHHH
Confidence 999998 56754 678888888888 6665777 47787776 4678 4788999999999988 6899999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHhhcC--------c-hhHHHHHHHHH-HhcCCCCCCchHHHHHHHHhc
Q 043955 621 FVRSMQIEPT-AEVWCALLGACRVHS--------N-KELGEIVAKKL-LELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 621 ~~~~m~~~p~-~~~~~~ll~a~~~~~--------~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 678 (835)
+++++...|+ ..++..|...+...| + .+.|..+++++ ++++|.....|..++..+...
T Consensus 298 ~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9988866664 557888888877663 3 58999999999 999999999998887766543
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=1.3e-12 Score=134.00 Aligned_cols=212 Identities=13% Similarity=-0.051 Sum_probs=156.7
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh
Q 043955 468 ALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRG 544 (835)
Q Consensus 468 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 544 (835)
+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 49 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH
Confidence 3333334444444444444444332 2245567788888999999999999998765 34688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 545 KVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 545 ~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
++|+..|+++.+ ..|+.......+..+...|++++|..+|+...... .++...+ .++..+...+..++|.+.+++
T Consensus 128 ~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 128 KLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence 999999999998 56776665556666677899999999998776442 2233444 477778888889999999988
Q ss_pred C-CCCCC-----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 625 M-QIEPT-----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 625 m-~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
+ ...|+ ..+|..+...+...|+.+.|...++++++++|++. ...+.++...|++++|.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 203 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC---HHHHHHHHHHHHHHHC----
T ss_pred HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 7 44342 46788888999999999999999999999999874 44577888889888886553
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=8e-12 Score=126.31 Aligned_cols=195 Identities=9% Similarity=-0.058 Sum_probs=166.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYA 572 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a 572 (835)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 4566778888999999999999998765 346788999999999999999999999999884 44 45677888888
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKEL 649 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~ 649 (835)
+...|++++|..+|+.+.. .+..| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998875 34567 4778888999999999999999999887 4445 56788888889999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 650 GEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
|...++++++..|+++..+..++.+|...|++++|.+..+.+.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877653
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=2.5e-12 Score=137.65 Aligned_cols=224 Identities=8% Similarity=0.038 Sum_probs=189.3
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
+...|+.+...+.+.|++++|+..|++.+. +.|+. ..+++.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~----------------------------------~~a~~~~g~ 139 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAAN----------------------------------YTVWHFRRV 139 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTC----------------------------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccC----------------------------------HHHHHHHHH
Confidence 345688888889999999999999999887 45553 344677778
Q ss_pred HHHhcCC-hhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHH
Q 043955 506 MYARCGA-LDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLIN 580 (835)
Q Consensus 506 ~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~ 580 (835)
.|.+.|+ +++|...|+++. ..+...|+.+...|...|++++|+..|+++++ +.|+. ..|..+..++.+.|+++
T Consensus 140 ~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 140 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChH
Confidence 8888997 999999999876 45788999999999999999999999999998 67754 67888999999999999
Q ss_pred HHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhh-cCCHHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHhhcC--chhH
Q 043955 581 EGKKFLEIMRCDYQLDP-WPEHYACLVDLLGR-ANHLEEA-----YQFVRSM-QIEP-TAEVWCALLGACRVHS--NKEL 649 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r-~g~~~eA-----~~~~~~m-~~~p-~~~~~~~ll~a~~~~~--~~~~ 649 (835)
+|+.+|+.+. .+.| +...|..++.+|.+ .|+.++| ++.+++. .+.| +...|..+...+...| +.+.
T Consensus 218 eAl~~~~~al---~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 218 NELQYVDQLL---KEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp THHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHH
T ss_pred HHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHH
Confidence 9999999988 5678 58899999999999 7776777 4677666 5667 4669999999988887 6899
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHhcC---------CchHHHHHHHHH
Q 043955 650 GEIVAKKLLELDPGNPGNYVLISNVFAASR---------KWKDVEQVRMRM 691 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------~~~~a~~~~~~m 691 (835)
|...++++ +++|+++..+..|+++|...| ..++|.++.+.+
T Consensus 295 a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 295 LLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999985 258888888776
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=1.3e-11 Score=124.73 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=164.7
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDM 506 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 506 (835)
...|..+...|...|++++|+..|+++... .|+ +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC----------------------------------hHHHHHHHHHH
Confidence 456777888888899999999999888763 232 23345666777
Q ss_pred HHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHH
Q 043955 507 YARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEG 582 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a 582 (835)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++...+..|+. ..+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 788888888888887654 346778888999999999999999999999875456654 5677788888999999999
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999988743 46 4788899999999999999999999887 4445 566788888888999999999999999999
Q ss_pred cCCCCCCchHH
Q 043955 660 LDPGNPGNYVL 670 (835)
Q Consensus 660 l~p~~~~~~~~ 670 (835)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998765443
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=1.2e-11 Score=122.24 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=126.7
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDM 506 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 506 (835)
...|..+...|...|++++|++.|+++... .|+ +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------------------~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK----------------------------------NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc----------------------------------chHHHHHHHHH
Confidence 445666666677777777777777766652 222 12234445555
Q ss_pred HHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHH
Q 043955 507 YARCGALDIANKVFNCVQ---TKDLILWTSMINANGLH-GRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINE 581 (835)
Q Consensus 507 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~ 581 (835)
|...|++++|.+.|+++. ..+...|..+...|... |++++|+..|+++.+.+..|+. ..+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 666666666666665543 23555666677777777 7777777777777663334443 455666666677777777
Q ss_pred HHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 043955 582 GKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP--TAEVWCALLGACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p--~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 657 (835)
|..+|+.+.+ ..| +...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.+....+.+
T Consensus 132 A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 132 AEAYLKRSLA---AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 7777776653 234 3566666777777777777777776665 2222 3445555555566667777777777777
Q ss_pred HhcCCCCCCchHHH
Q 043955 658 LELDPGNPGNYVLI 671 (835)
Q Consensus 658 ~~l~p~~~~~~~~l 671 (835)
.+.+|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 77777766555444
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.3e-11 Score=122.00 Aligned_cols=195 Identities=9% Similarity=-0.010 Sum_probs=171.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~ 571 (835)
++.++..+...|...|++++|.+.|+.+. ..+...|..+...|...|+.++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 45677888999999999999999998765 346789999999999999999999999999984 45 4567888888
Q ss_pred Hhccc-CcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCch
Q 043955 572 ACSHS-GLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNK 647 (835)
Q Consensus 572 a~~~~-g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~ 647 (835)
.+... |++++|..+|+.+.+ .+..|+ ...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999886 345564 788899999999999999999999887 4445 467888999999999999
Q ss_pred hHHHHHHHHHHhcCC-CCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 648 ELGEIVAKKLLELDP-GNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 648 ~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+.|...+++++++.| +++..+..++.+|...|+++++....+.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999888765
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=3.1e-12 Score=128.36 Aligned_cols=214 Identities=13% Similarity=0.031 Sum_probs=135.6
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
....|..+...+.+.|++++|+..|+++... .|+ +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHH
Confidence 3455666666677777777777777777652 222 1233444555
Q ss_pred HHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 043955 506 MYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEG 582 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 582 (835)
.|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 5666666666666666543 2356677777888888888888888888887742 23455677777778888888888
Q ss_pred HHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q 043955 583 KKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 583 ~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 659 (835)
..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.|...++++++
T Consensus 145 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 145 LPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888877633 44 4677888888888888888888888776 3334 466788888888888999999999999999
Q ss_pred cCCCCCCchHHHHHHHHhcC
Q 043955 660 LDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 660 l~p~~~~~~~~l~~~y~~~g 679 (835)
++|+++..+..++.+....|
T Consensus 222 ~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 222 IQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HCTTCHHHHHHHTC------
T ss_pred cCcchHHHHHHHHHHHhhcc
Confidence 99988888777766655433
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.38 E-value=3e-10 Score=125.37 Aligned_cols=351 Identities=10% Similarity=0.006 Sum_probs=208.4
Q ss_pred HHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCCh---hHHHHHHHhcCCCCcccHHHHHHHHHhcC----
Q 043955 269 SASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCV---NYMGRVFYQMTAQDFISWTTIIAGYAQNN---- 341 (835)
Q Consensus 269 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g---- 341 (835)
..+.+.|+++.|.+.+....+.| +...+..|-.+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 34445566667777776666665 445566677777778888 89999998887767778888877666665
Q ss_pred -ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCc---hHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChh----
Q 043955 342 -CHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCM---SQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNID---- 413 (835)
Q Consensus 342 -~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~---- 413 (835)
++++|+..|++....|... .+..+-..+...+.. ..+.+.+......|. ......|..+|...+.++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY--PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC--TTHHHHHHHHHHHHTCGGGGHH
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCcccCHH
Confidence 6789999999998876443 333333333333322 334444444444443 346667777887777544
Q ss_pred hHHHHHHhcCCCCchhHHHHHHHHHhCC---ChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH
Q 043955 414 YSRNVFESIESKDVVSWTSMISSYVHNG---LANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR 490 (835)
Q Consensus 414 ~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 490 (835)
.+..++......++.++..|...|.+.| +.++|++.|++....|. ++.
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a---------------------------- 213 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTA---------------------------- 213 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCH----------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHH----------------------------
Confidence 4455566666667778888888888888 88888888888877652 221
Q ss_pred hCCCCchhHHHHHHHHHHhc----CChhhHHHHhhhCCCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCH
Q 043955 491 KGFNLEGSVASSLVDMYARC----GALDIANKVFNCVQTKDLILWTSMINA-N--GLHGRGKVAIDLFYKMEAESFAPDH 563 (835)
Q Consensus 491 ~g~~~~~~~~~~li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~Al~l~~~m~~~g~~Pd~ 563 (835)
..+..|..+|... ++.++|.+.|+.....++..+..+... | ...|+.++|++.|++..+.| +.
T Consensus 214 -------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 214 -------QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp -------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred -------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 1223344445433 577788888877663466777777776 4 45788888999998888766 44
Q ss_pred HHHHHHHHHhcccC-----cHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHH
Q 043955 564 ITFLALLYACSHSG-----LINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSMQIEPTAEVW 634 (835)
Q Consensus 564 ~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~ 634 (835)
..+..+...+. .| +.++|..+|+... .-++..+..|..+|.. ..++++|.+.+++.--..++...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 45555555554 45 8888988888554 2256677777777765 34888999988887222233344
Q ss_pred HHHHHHHh----hcCchhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 043955 635 CALLGACR----VHSNKELGEIVAKKLLELDPGNPGNYVLISNV 674 (835)
Q Consensus 635 ~~ll~a~~----~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 674 (835)
..|...+. ..+|.+.|...++++.+..+.+ .-..+..+
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l 399 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQL 399 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHH
Confidence 44544444 2458888999998888876543 33444444
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=7e-12 Score=125.77 Aligned_cols=193 Identities=10% Similarity=0.066 Sum_probs=153.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~ 571 (835)
....+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 455667788889999999999999998753 46789999999999999999999999999984 45 4567888888
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~ 648 (835)
.+...|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999988754 45 5788999999999999999999999887 4444 5778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.|+..++++++..|+++..+..++.+|...|++++|.+..+...+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999887765
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=2.5e-12 Score=143.03 Aligned_cols=188 Identities=8% Similarity=0.001 Sum_probs=167.8
Q ss_pred chhHHHHHHHHHHhcCCh-hhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGAL-DIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~-~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~ 571 (835)
+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++.++ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 566777888888899999 99999998765 34678999999999999999999999999998 5788888888999
Q ss_pred Hhccc---------CcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC---
Q 043955 572 ACSHS---------GLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRA--------NHLEEAYQFVRSM-QIEP--- 629 (835)
Q Consensus 572 a~~~~---------g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~--------g~~~eA~~~~~~m-~~~p--- 629 (835)
++... |++++|..+|+... .+.| +...|..++.+|.+. |++++|++.+++. .+.|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAV---QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 99999999999887 4567 488899999999999 9999999999988 5556
Q ss_pred -CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHH
Q 043955 630 -TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVR 688 (835)
Q Consensus 630 -~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 688 (835)
++..|..+..++...|+.+.|...++++++++|+++..+..++.+|...|++++|.+..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67789999999999999999999999999999999999999999999999999998643
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=6.5e-11 Score=121.07 Aligned_cols=227 Identities=12% Similarity=0.052 Sum_probs=164.0
Q ss_pred ccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CCch----hHHHHHHHHHhCCChHHHHH
Q 043955 375 LKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES--KDVV----SWTSMISSYVHNGLANEALE 448 (835)
Q Consensus 375 ~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~----~~~~li~~~~~~g~~~~Al~ 448 (835)
.|+++.|...+..+++..+.+..++..+...|...|++++|...|++..+ ++.. +|..+...|.+.|++++|+.
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 33333333334444444444444666777788888888888888887654 2222 37888889999999999999
Q ss_pred HHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---
Q 043955 449 LFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--- 525 (835)
Q Consensus 449 lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--- 525 (835)
.|++.... .|+ +..++..+...|.+.|++++|...|++..+
T Consensus 96 ~~~~a~~~--~~~----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 96 QYQAAVDR--DTT----------------------------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139 (272)
T ss_dssp HHHHHHHH--STT----------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred HHHHHHhc--Ccc----------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence 99998873 232 234567788889999999999999998774
Q ss_pred CChhHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCc---HHHHHHHHHHhhhcCCCCCC--
Q 043955 526 KDLILWTSMI-NANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGL---INEGKKFLEIMRCDYQLDPW-- 598 (835)
Q Consensus 526 ~~~~~~~~li-~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~i~p~-- 598 (835)
.+...|..+. ..| ..+++++|++.|+++.+ ..|+ ...+..+..++...|. .++|...|+...+...-.|+
T Consensus 140 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 140 TDPKVFYELGQAYY-YNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred CcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence 3567788888 555 45699999999999998 5666 4566677777777787 88899988887755443454
Q ss_pred ----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 043955 599 ----PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGA 640 (835)
Q Consensus 599 ----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a 640 (835)
.+.|..++.++.+.|++++|.+.++++ .+.|+ +..+..+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 367888999999999999999999988 55664 4456555443
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.33 E-value=4.7e-11 Score=122.20 Aligned_cols=188 Identities=13% Similarity=-0.052 Sum_probs=101.6
Q ss_pred HHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCC
Q 043955 365 IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNG 441 (835)
Q Consensus 365 ~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 441 (835)
+..+...+...|+++.|...+..+++..+.+..++..+...|...|++++|.+.|++..+ .+...|..+...|.+.|
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence 333344444445555555555555555555555677777777788888888877776643 35677777888888888
Q ss_pred ChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhh
Q 043955 442 LANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFN 521 (835)
Q Consensus 442 ~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 521 (835)
++++|+..|+++.. ..|+.......+..+...|+++.|...+........ ++...+ .++..+...++.++|...+.
T Consensus 126 ~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 126 RDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLK 201 (275)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHH
Confidence 88888888888876 345554443344444444555555555544444321 111111 23444444444444555444
Q ss_pred hCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 522 CVQTKD-------LILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 522 ~~~~~~-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
.....+ ...|..+...|...|+.++|+..|++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 443321 23344444444444444444444444443
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=8.4e-12 Score=135.92 Aligned_cols=255 Identities=13% Similarity=0.019 Sum_probs=171.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---------CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---------KDVVSWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVS 467 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ 467 (835)
++..+...|...|++++|...|++... .....|..+...|...|++++|+..|++....... ++...
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 125 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--- 125 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc---
Confidence 455666677777777777777665421 12345677777888888888888888877652110 11000
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC--------------------hhhHHHHhhhCCC--
Q 043955 468 ALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGA--------------------LDIANKVFNCVQT-- 525 (835)
Q Consensus 468 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~--------------------~~~A~~~f~~~~~-- 525 (835)
...++..+...|...|+ +++|.+.|++...
T Consensus 126 ----------------------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 126 ----------------------------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12234445555556666 5666555554321
Q ss_pred -----C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcC
Q 043955 526 -----K--DLILWTSMINANGLHGRGKVAIDLFYKMEAES-FAPD----HITFLALLYACSHSGLINEGKKFLEIMRCDY 593 (835)
Q Consensus 526 -----~--~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 593 (835)
+ ...+|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..+|+......
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 23467888888888899999998888877521 0122 1367777788889999999999988765322
Q ss_pred ---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcC
Q 043955 594 ---QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELD 661 (835)
Q Consensus 594 ---~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 661 (835)
+-.+ ....+..++.++.+.|++++|.+.+++. +-.++ ..+|..+...+...|+.+.|...+++++++.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1111 1567888999999999999999988776 11222 4467788888899999999999999999885
Q ss_pred CC------CCCchHHHHHHHHhcCCchH
Q 043955 662 PG------NPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 662 p~------~~~~~~~l~~~y~~~g~~~~ 683 (835)
+. ....+..|+.+|...|+...
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 43 34567888888888887643
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=2.6e-11 Score=116.01 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYAC 604 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~ 604 (835)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++.+.|++++|...+..... ..| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 344566666666666666666666666665 34543 3455555666666666666666665542 234 3455555
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
+...+...+++++|.+.+++. ...| +..+|..+...+...|+.+.|+..++++++++|+++..|..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 666666666666666666655 3334 34466666666666777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHH
Q 043955 683 DVEQVRMRMR 692 (835)
Q Consensus 683 ~a~~~~~~m~ 692 (835)
+|.+..++.-
T Consensus 159 ~A~~~~~~al 168 (184)
T 3vtx_A 159 EAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766655443
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.31 E-value=2.1e-10 Score=117.53 Aligned_cols=161 Identities=12% Similarity=-0.082 Sum_probs=108.4
Q ss_pred chhHHHHHHHHHHh----cCChhhHHHHhhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 043955 496 EGSVASSLVDMYAR----CGALDIANKVFNCVQT-KDLILWTSMINANGL----HGRGKVAIDLFYKMEAESFAPDHITF 566 (835)
Q Consensus 496 ~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~Pd~~t~ 566 (835)
++..+..|..+|.. .|++++|...|++..+ .+..+|..+...|.. .|+.++|++.|++..+.+ +...+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 34445556666666 7777777777766543 356677777777777 778888888888877754 34445
Q ss_pred HHHHHHhcc----cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 043955 567 LALLYACSH----SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSM-QIEPTAEVWCAL 637 (835)
Q Consensus 567 ~~ll~a~~~----~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~~~~~~~l 637 (835)
..+...+.. .++.++|..+|+...+. .+...+..+..+|.+ .|++++|.+.+++. ...| +..+..|
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l 224 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 555555655 77788888877766533 134566667777777 77888888777766 2223 5566666
Q ss_pred HHHHhh----cCchhHHHHHHHHHHhcCCCC
Q 043955 638 LGACRV----HSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 638 l~a~~~----~~~~~~a~~~~~~~~~l~p~~ 664 (835)
...+.. .++.+.|...++++++++|++
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 666666 777788888888888777754
No 57
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.31 E-value=5.3e-11 Score=117.26 Aligned_cols=186 Identities=17% Similarity=-0.004 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASS 474 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~ 474 (835)
.+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~------------ 72 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRY------------ 72 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc------------
Confidence 455555555666666666666655432 23445555555555666666666666555542 2332
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-----------CChhhHHHHhhhCC---CCChhHHHHHHHHHHh
Q 043955 475 LSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARC-----------GALDIANKVFNCVQ---TKDLILWTSMINANGL 540 (835)
Q Consensus 475 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~-----------g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 540 (835)
...+..+...|.+. |++++|...|++.. ..+...|..+...|..
T Consensus 73 ----------------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 73 ----------------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 22233333334343 55666666555443 2244556666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
.|++++|+..|++.++.. .+...+..+..++...|++++|...|+... .+.| +...+..++.++.+.|++++|.
T Consensus 131 ~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKAL---EQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTC--------
T ss_pred cCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 666666666666665543 444555555555666666666666666554 2345 3555555666666666666666
Q ss_pred HHHHh
Q 043955 620 QFVRS 624 (835)
Q Consensus 620 ~~~~~ 624 (835)
+.+++
T Consensus 206 ~~~~~ 210 (217)
T 2pl2_A 206 RAAAL 210 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55554
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=1.2e-11 Score=143.09 Aligned_cols=160 Identities=17% Similarity=0.243 Sum_probs=127.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++...|++++|...|+... .+.|+ .+.|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---~l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 456778888888888888888888888887 56764 567777888888888888888888776 45674 778888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
++.+|.+.|++++|++.+++. .+.|+ ...|..|..++...|+.+.|+..++++++++|+++.+|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888776 55664 5578888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 043955 683 DVEQVRMRM 691 (835)
Q Consensus 683 ~a~~~~~~m 691 (835)
+|.+..++.
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765443
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=2.9e-11 Score=115.60 Aligned_cols=165 Identities=14% Similarity=0.059 Sum_probs=144.5
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~ 571 (835)
++.+|..|...|.+.|++++|.+.|++.. +.++.+|..+...|.+.|++++|+..+++... ..|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 56788999999999999999999999865 35788999999999999999999999999988 4554 455667777
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~ 648 (835)
.+...++++++...+.... .+.| +...+..++.++.+.|++++|++.+++. ...| ++.+|..+..++...|+.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAI---ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHH---HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999999877 4467 4788999999999999999999999887 5556 5668999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 043955 649 LGEIVAKKLLELDPGNP 665 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~ 665 (835)
.|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999864
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=1.8e-10 Score=127.24 Aligned_cols=343 Identities=10% Similarity=-0.003 Sum_probs=196.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCc---hHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Q 043955 332 TIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCM---SQTKEIHGYIIRKGLSDLVILNAIVDVYGK 408 (835)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~li~~y~k 408 (835)
.+...+.+.|++++|+.+|++..+.|- |+.. ..+-..+...|+. ++|...+....+. +...+..|..++..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY-SEAQ--VGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-CTGG--GTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 356677888999999999999887763 2222 2222223345555 7777777777755 33355556664444
Q ss_pred cC-----ChhhHHHHHHhcCCC-CchhHHHHHHHHHhCCChHH---HHHHHHHHhhcCCcCChhhhHhHHHHhhcccchh
Q 043955 409 CG-----NIDYSRNVFESIESK-DVVSWTSMISSYVHNGLANE---ALELFYLMNEANVESDSITLVSALSAASSLSILK 479 (835)
Q Consensus 409 ~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 479 (835)
.| +.++|...|++..++ +...+..|...|...+..++ +++.+.+....|. ......+-..+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 44 567777777766543 45567777777776655433 4444444443332 233333444444445444
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---ChhhHHHHhhhCCC---CChhHHHHHHHHHHhc----CChHHHHH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCG---ALDIANKVFNCVQT---KDLILWTSMINANGLH----GRGKVAID 549 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~----g~~~~Al~ 549 (835)
..........+.-...++..+..|..+|.+.| +.++|.+.|....+ ++...+..+...|... ++.++|++
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44433333333333444557777888888888 77788888876543 3334446676666544 57788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-h--cccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC-----CHHHHHHH
Q 043955 550 LFYKMEAESFAPDHITFLALLYA-C--SHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRAN-----HLEEAYQF 621 (835)
Q Consensus 550 l~~~m~~~g~~Pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g-----~~~eA~~~ 621 (835)
.|++.. .| .| ..+..+... + ...|+.++|..+|+...+. | ++..+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g-~~--~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG-YP--ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG-ST--HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC-CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 888876 32 22 233333333 2 4577888888888776532 2 4566666777776 45 88888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhh----cCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh----cCCchHHHHHHHHHHc
Q 043955 622 VRSMQIEPTAEVWCALLGACRV----HSNKELGEIVAKKLLELDPGNPGNYVLISNVFAA----SRKWKDVEQVRMRMRG 693 (835)
Q Consensus 622 ~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~ 693 (835)
+++.- ..++..+..|...+.. ..|.+.|...++++.+ +.++.++..|+.+|.. ..+.++|..+.++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 88876 4456666666655544 2377888888888765 4567777888888874 4577777777777666
Q ss_pred CC
Q 043955 694 SG 695 (835)
Q Consensus 694 ~~ 695 (835)
.|
T Consensus 387 ~g 388 (452)
T 3e4b_A 387 QD 388 (452)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.28 E-value=1.6e-11 Score=134.10 Aligned_cols=264 Identities=10% Similarity=-0.048 Sum_probs=171.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC--CC-c----hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHhHH
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES--KD-V----VSWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVSAL 469 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~~-~----~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ll 469 (835)
.+..+...|...|++++|...|++..+ |+ . ..|..+...|...|++++|+..|++.....-. .+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------- 122 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR------- 122 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc-------
Confidence 444566677777777777777776543 22 2 35666667777777777777777776542100 000
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---------CChhHHHHHHHHHHh
Q 043955 470 SAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---------KDLILWTSMINANGL 540 (835)
Q Consensus 470 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~ 540 (835)
.....++..+...|...|++++|...|++..+ ....+|..+...|..
T Consensus 123 ------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 123 ------------------------LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 01233455666667777777777777665432 123467777777777
Q ss_pred cCC-----------------hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC
Q 043955 541 HGR-----------------GKVAIDLFYKMEAE----SFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW 598 (835)
Q Consensus 541 ~g~-----------------~~~Al~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~ 598 (835)
.|+ +++|++.|++..+. +-.|.. .++..+...+...|++++|..+|+...+...-.++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 777 77777777776541 111222 35666777778888888888888766532211111
Q ss_pred ----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC-
Q 043955 599 ----PEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP- 665 (835)
Q Consensus 599 ----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~- 665 (835)
...|..++.+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+.+.|...+++++++.|+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 336777888888888888888887765 11111 34677777778888888888888888888765443
Q ss_pred -----CchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 666 -----GNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 666 -----~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
..|..++.+|...|++++|.+..+...
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 367888888888899888888776554
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=2.9e-11 Score=131.57 Aligned_cols=265 Identities=14% Similarity=0.015 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC--C-C----chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHH
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIES--K-D----VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALS 470 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~ 470 (835)
.+..+...+.+.|++++|...|++..+ | + ...|..+...|...|++++|+..|++......
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------ 78 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------------ 78 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH------------
Confidence 445556666667777777766665532 2 2 23455666666666777777766666543110
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHh
Q 043955 471 AASSLSILKKGKELNGFIIRKGFNL-EGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGL 540 (835)
Q Consensus 471 a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~ 540 (835)
+.+-.+ ...++..+...|...|++++|...|++..+ ++ ..+|..+...|..
T Consensus 79 -------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 79 -------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 001111 134566778888899999999988876552 22 3488899999999
Q ss_pred cCC--------------------hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC
Q 043955 541 HGR--------------------GKVAIDLFYKMEAE----SFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQL 595 (835)
Q Consensus 541 ~g~--------------------~~~Al~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i 595 (835)
.|+ +++|++.|++.... +-.|.. .++..+...+...|++++|..+|+...+...-
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 999 99999999987652 112222 35777888899999999999999987643222
Q ss_pred CCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 596 DPW----PEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 596 ~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
.++ ...|..++.++.+.|++++|.+.+++. +-.++ ..+|..+...+...|+.+.|...+++++++.|.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 222 457889999999999999999998876 21222 446788888899999999999999999998765
Q ss_pred C------CCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 664 N------PGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 664 ~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
. +..+..++.+|...|++++|.+..+...+
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 45788999999999999999998766543
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=3.3e-11 Score=127.09 Aligned_cols=264 Identities=14% Similarity=0.009 Sum_probs=177.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCC--C-C----chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHH
Q 043955 399 LNAIVDVYGKCGNIDYSRNVFESIES--K-D----VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSA 471 (835)
Q Consensus 399 ~~~li~~y~k~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a 471 (835)
.......+...|++++|...|++..+ | + ...|..+...|...|++++|++.|++.....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------------
Confidence 33445556666666666666665532 2 2 2345556666666666666666666654310
Q ss_pred hhcccchhhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhc
Q 043955 472 ASSLSILKKGKELNGFIIRKGFN-LEGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLH 541 (835)
Q Consensus 472 ~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~ 541 (835)
.+.+-. ....++..+...|...|++++|...|++..+ ++ ..+|..+...|...
T Consensus 74 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 74 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp -----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 001111 1134556677777888888888887776442 12 23777788888888
Q ss_pred CC--------------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCC
Q 043955 542 GR--------------------GKVAIDLFYKMEAE----SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLD 596 (835)
Q Consensus 542 g~--------------------~~~Al~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 596 (835)
|+ +++|++.|++.... +..|. ..++..+...+...|++++|..+|+...+...-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 88 88888888876542 11222 2356677778888999999999988765332111
Q ss_pred C----ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 597 P----WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 597 p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
+ ....+..++.++.+.|++++|.+.+++. +-.++ ..++..+...+...|+.+.|...+++++++.|..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1 1347888899999999999999888776 21222 3467777788889999999999999999887654
Q ss_pred C------CchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 665 P------GNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 665 ~------~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
. ..+..++.+|...|++++|.+..+...+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3 3778899999999999999998876654
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=6.1e-10 Score=116.30 Aligned_cols=185 Identities=12% Similarity=0.071 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHH
Q 043955 479 KKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--K-DLI-LWTSMINANGLHGRGKVAIDLFYKM 554 (835)
Q Consensus 479 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~Al~l~~~m 554 (835)
+.|..++...++.-.+.+..++..++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|+.++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555421223455778888889999999999999987664 3 344 8999999999999999999999999
Q ss_pred HHCCCCCC-HHHHHHHHHHhc-ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 043955 555 EAESFAPD-HITFLALLYACS-HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QI 627 (835)
Q Consensus 555 ~~~g~~Pd-~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~ 627 (835)
.+. .|+ ...|........ ..|+.++|..+|+...+. .| +...|..+++++.+.|++++|..++++. ++
T Consensus 161 ~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 884 343 344544433322 379999999999988743 46 4788899999999999999999999887 24
Q ss_pred CCC--HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 628 EPT--AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 628 ~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.|+ ..+|..++.....+|+.+.|..++++++++.|+++...
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~ 278 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccc
Confidence 653 56899999999999999999999999999999876443
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.26 E-value=7.4e-10 Score=113.37 Aligned_cols=223 Identities=11% Similarity=-0.068 Sum_probs=183.8
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043955 426 DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVD 505 (835)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 505 (835)
+..++..+...|.+.|++++|+..|++..+. + +...+..|..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~----------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----K----------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T----------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C----------------------------------CHHHHHHHHH
Confidence 5567777778888888888888888887652 2 2233455667
Q ss_pred HHHh----cCChhhHHHHhhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-
Q 043955 506 MYAR----CGALDIANKVFNCVQT-KDLILWTSMINANGL----HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSH- 575 (835)
Q Consensus 506 ~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~- 575 (835)
+|.. .|++++|...|++..+ .+..+|..+...|.. .|+.++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 7777 8999999999987654 478899999999999 999999999999999865 66777788888888
Q ss_pred ---cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----c
Q 043955 576 ---SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSMQIEPTAEVWCALLGACRV----H 644 (835)
Q Consensus 576 ---~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~ 644 (835)
.|+.++|..+|+...+. + +...+..+..+|.+ .|++++|.+.+++.--..++..+..|...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999988753 2 46677888899988 99999999999987222356678888888888 8
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHh----cCCchHHHHHHHHHHcCC
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVFAA----SRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 695 (835)
++.+.|...++++++.+| +..+..|+.+|.. .|++++|.+..++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999999999977 6788999999999 999999999988776644
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=1.5e-08 Score=115.81 Aligned_cols=146 Identities=6% Similarity=-0.001 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc--CCCCCeeeHHHHHHHHHhCCC---hhHHHHHHHHH
Q 043955 77 GAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRM--GEKEDVVLWNSIISAYSASGQ---CLEALGLFREM 151 (835)
Q Consensus 77 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~n~li~~~~~~g~---~~~A~~l~~~m 151 (835)
....++..+... +-|...|..++....+.+.++.++.+|+++ ..+.....|...+..-.+.|+ .+.+.++|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 344455555544 357889999999999999999999999988 332466789888888888888 99999999998
Q ss_pred HHCC-CCCChhhHHHHHHHhhcCCCh--------hHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHh---------CCC
Q 043955 152 QRVG-LVTNAYTFVAALQACEDSSFE--------TLGMEIHAATVKS-GQ-NLQ-VYVANALIAMYAR---------CGK 210 (835)
Q Consensus 152 ~~~g-~~p~~~t~~~ll~a~~~~~~~--------~~a~~l~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~ 210 (835)
.... ..|+...+..-+.-..+.++. +...++|+.++.. |. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8754 237776666666554444332 3345677776653 66 553 4577777765443 234
Q ss_pred hhHHHHHHhcCCC
Q 043955 211 MTEAAGVLYQLEN 223 (835)
Q Consensus 211 ~~~A~~~f~~~~~ 223 (835)
++.++++|++...
T Consensus 210 ~~~~R~iy~raL~ 222 (679)
T 4e6h_A 210 VQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 5666777766553
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.24 E-value=1e-10 Score=123.31 Aligned_cols=272 Identities=13% Similarity=0.028 Sum_probs=172.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhc
Q 043955 330 WTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKC 409 (835)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~ 409 (835)
+......+...|++++|+..|++..... |+.... ...++..+...|...
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~-----------------------------~~~~~~~l~~~~~~~ 56 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT-----------------------------LSAIYSQLGNAYFYL 56 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH-----------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHH-----------------------------HHHHHHHHHHHHHHc
Confidence 4444556667777777777777766542 221100 012455666777777
Q ss_pred CChhhHHHHHHhcCC---------CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHhHHHHhhcccchh
Q 043955 410 GNIDYSRNVFESIES---------KDVVSWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVSALSAASSLSILK 479 (835)
Q Consensus 410 g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~ 479 (835)
|++++|...|++..+ .....|..+...|...|++++|+..|++....... ++...
T Consensus 57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------- 121 (338)
T 3ro2_A 57 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------- 121 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------
T ss_pred CCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH---------------
Confidence 777777777765432 12456777888888999999999998887652111 11110
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC--------------------hhhHHHHhhhCCC-------C--ChhH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGA--------------------LDIANKVFNCVQT-------K--DLIL 530 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~--------------------~~~A~~~f~~~~~-------~--~~~~ 530 (835)
...++..+...|...|+ +++|.+.|++... + ....
T Consensus 122 ----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (338)
T 3ro2_A 122 ----------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185 (338)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 01233344445555555 5555555544321 1 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcC---CCCC-ChhH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESF-APD----HITFLALLYACSHSGLINEGKKFLEIMRCDY---QLDP-WPEH 601 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p-~~~~ 601 (835)
|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+|+...... +-.+ ....
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 77777888888888888888888765210 111 1256677777888899999988888765322 1111 1567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM----QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+..++.++.+.|++++|.+.++++ +-.++ ..+|..+...+...|+.+.|...+++++++.|+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 788889999999999999888776 11122 336777888889999999999999999998775
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.21 E-value=1.6e-10 Score=126.17 Aligned_cols=272 Identities=13% Similarity=0.007 Sum_probs=179.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhc
Q 043955 330 WTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKC 409 (835)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~ 409 (835)
+..+...+...|++++|+..|++.... .|+.... ...++..+...|...
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~-----------------------------~~~~~~~lg~~~~~~ 99 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRT-----------------------------LSAIYSQLGNAYFYL 99 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH-----------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhH-----------------------------HHHHHHHHHHHHHHC
Confidence 344455666667777777777666654 2221100 002456667777777
Q ss_pred CChhhHHHHHHhcCC---------CCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHhHHHHhhcccchh
Q 043955 410 GNIDYSRNVFESIES---------KDVVSWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVSALSAASSLSILK 479 (835)
Q Consensus 410 g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~ 479 (835)
|++++|...|++..+ .....|..+...|...|++++|+..|++....... .+..
T Consensus 100 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------- 163 (411)
T 4a1s_A 100 GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL---------------- 163 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------
T ss_pred CCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH----------------
Confidence 887777777765532 13456777888889999999999998887652100 0100
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-----------------hhhHHHHhhhCCC-------C--ChhHHHH
Q 043955 480 KGKELNGFIIRKGFNLEGSVASSLVDMYARCGA-----------------LDIANKVFNCVQT-------K--DLILWTS 533 (835)
Q Consensus 480 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~-----------------~~~A~~~f~~~~~-------~--~~~~~~~ 533 (835)
....++..+...|...|+ +++|.+.|++..+ + ...+|..
T Consensus 164 ---------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 228 (411)
T 4a1s_A 164 ---------------SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGN 228 (411)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 012234455555666666 6666666554321 1 2347788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCC---CCC-ChhHHHH
Q 043955 534 MINANGLHGRGKVAIDLFYKMEAESF-APD----HITFLALLYACSHSGLINEGKKFLEIMRCDYQ---LDP-WPEHYAC 604 (835)
Q Consensus 534 li~~~~~~g~~~~Al~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---i~p-~~~~y~~ 604 (835)
+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+|+....... -.+ ....+..
T Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888999999988888776210 112 12567778888899999999999987654321 111 2567888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QI---EPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
++.++.+.|++++|.+.+++. .+ .++ ..++..+...+...|+.+.|...+++++++.+.
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999998876 11 112 336777888899999999999999999988764
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=5.5e-11 Score=137.55 Aligned_cols=243 Identities=11% Similarity=0.121 Sum_probs=178.8
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~ 571 (835)
+...++.|...|.+.|++++|.+.|++.. ..+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 36678899999999999999999999865 34678999999999999999999999999998 67875 67889999
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~ 648 (835)
++...|++++|.+.|+... .+.| +.+.|..++.+|.+.|++++|++.+++. .+.|+ ...|..|..++...|+.+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl---~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAI---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999887 5678 4899999999999999999999999987 66774 568999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------CCchHHHHHHHHhcCCchHHHHH------HHHHHcCCCccCCceeEEE---ECC-EEE
Q 043955 649 LGEIVAKKLLELDPGN------PGNYVLISNVFAASRKWKDVEQV------RMRMRGSGLKKTPGSSWIE---IGN-KIH 712 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~------~~~m~~~~~~k~~g~s~i~---~~~-~~~ 712 (835)
.|+..+++++++.|+. +..+...+..|.....++.+..- ........ +.|...... -++ -.-
T Consensus 163 ~A~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~klrI 240 (723)
T 4gyw_A 163 DYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLH--KPPYEHPKDLKLSDGRLRV 240 (723)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHHTTT--CCCCCCCCSSTTTTTCEEE
T ss_pred HHHHHHHHHHHhChhHHhhccCcccchhhhhhhhcCHHHHHHHHHHHHHhhhhhhhccc--CccccCcccccccccccee
Confidence 9999999999887642 11222222223222222222211 11111111 111100000 011 235
Q ss_pred EEEeCC-CCCcCcHHHHHHHHHHHHHhHHhCCcc
Q 043955 713 SFIARD-KSHSESDEIYKKLAEITEKLEREGGYV 745 (835)
Q Consensus 713 ~f~~~d-~~hp~~~~i~~~l~~l~~~~~~~~~y~ 745 (835)
+|+++| +.||....+...++.+.+.-.+-.+|.
T Consensus 241 GyvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~ 274 (723)
T 4gyw_A 241 GYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA 274 (723)
T ss_dssp EEEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEE
T ss_pred eeechhhccCcHHHHHHHHHHHhccCceeEEEEE
Confidence 999999 889998888777777654321333453
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=2.5e-08 Score=113.89 Aligned_cols=416 Identities=11% Similarity=0.004 Sum_probs=253.4
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCC---hHhHHHHHHHHHHhCC-Cccccc
Q 043955 224 KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQ-VCTVNAVSASGRLGN---LLNGKELHAYAIKQGF-VSDLQI 298 (835)
Q Consensus 224 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~---~~~a~~i~~~~~~~g~-~~~~~~ 298 (835)
.|..+|..++..+.+.+..+.+..+|+++... -|.. ..+..-+..-.+.++ .+.+.++|+..+.... .|++.+
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 37778888888888888888888888888764 3443 334455555556666 7777777777776541 355556
Q ss_pred cchhhhhhhccCCh--------hHHHHHHHhcC------CC-CcccHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 043955 299 GNTLMDMYAKCCCV--------NYMGRVFYQMT------AQ-DFISWTTIIAGYAQ---------NNCHLKALELFRTVQ 354 (835)
Q Consensus 299 ~~~Li~~y~~~g~~--------~~A~~~f~~m~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 354 (835)
|...+....+.++. +..+++|+... .+ +...|...+.-... +++.+.+..+|.+.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 66555544443332 22335555421 11 23456666554321 233455666666665
Q ss_pred HcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhc-----------C
Q 043955 355 LEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESI-----------E 423 (835)
Q Consensus 355 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~-----------~ 423 (835)
......-..+|.....-.... +...++.+... ....++.|+..+.++ +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e--------------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDV-NQLTARRHIGE--------------------LSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHH--------------------HHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhc-CcchHHHHHHH--------------------hhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 321111111221111100000 01111111111 011222333333221 1
Q ss_pred C----------C--C------chhHHHHHHHHHhCCC-------hHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccch
Q 043955 424 S----------K--D------VVSWTSMISSYVHNGL-------ANEALELFYLMNEANVESDSITLVSALSAASSLSIL 478 (835)
Q Consensus 424 ~----------~--~------~~~~~~li~~~~~~g~-------~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 478 (835)
. | + ...|...|.---+++. .+.+..+|++.+.. ..-+...|.....-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 1 1345555544333321 23455678777764 222445555555556667888
Q ss_pred hhHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-------------C------------ChhHHH
Q 043955 479 KKGK-ELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-------------K------------DLILWT 532 (835)
Q Consensus 479 ~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-------------~------------~~~~~~ 532 (835)
+.+. .+++..++.. +.+..++-.++..+-+.|+++.|+++|+.+.. | ....|.
T Consensus 360 ~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8896 9999998743 45677788899999999999999999997753 2 123699
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 043955 533 SMINANGLHGRGKVAIDLFYKMEAE-SF-APDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLG 610 (835)
Q Consensus 533 ~li~~~~~~g~~~~Al~l~~~m~~~-g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 610 (835)
..+....+.|..+.|.++|.+.++. +. .+......+.+.- ...++.+.|+.+|+...+.++- +...+...++.+.
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHH
Confidence 9998888999999999999999985 21 1222222222321 2245699999999988866432 3555678889999
Q ss_pred hcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 611 RANHLEEAYQFVRSM-QIEP----TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~~p----~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
..|+.+.|..++++. ...| ...+|..++.--..+|+.+.+..+.+++.+..|+++..
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 999999999999987 3333 23489999999999999999999999999999987543
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=4.3e-10 Score=111.65 Aligned_cols=175 Identities=11% Similarity=-0.067 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhhhCC---C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 043955 498 SVASSLVDMYARCGALDIANKVFNCVQ---T-KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYA 572 (835)
Q Consensus 498 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a 572 (835)
..+..+...|.+.|++++|...|+... . ++...|..+...|...|++++|++.|++..+ ..|+. ..+..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 444445555555566666655555433 1 4445555555555566666666666666555 34443 234455555
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCCC-h-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--H-HHHHHHHHH
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDPW-P-------EHYACLVDLLGRANHLEEAYQFVRSM-QIEPT--A-EVWCALLGA 640 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~-------~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~--~-~~~~~ll~a 640 (835)
+...|++++|...|+...+ +.|+ . ..|..+..++.+.|++++|++.++++ ...|+ . ..|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5556666666666655542 2332 2 34555555555666666666665554 44454 2 245555555
Q ss_pred HhhcCch---------------------------hHHHHHHHHHHhcCCCCCCchHHHHHHHHh
Q 043955 641 CRVHSNK---------------------------ELGEIVAKKLLELDPGNPGNYVLISNVFAA 677 (835)
Q Consensus 641 ~~~~~~~---------------------------~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 677 (835)
+...|+. +.|...++++++++|+++.....|+.+...
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 5444444 899999999999999998888888777543
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=4.9e-10 Score=111.22 Aligned_cols=153 Identities=11% Similarity=-0.019 Sum_probs=134.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 043955 526 KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYAC 604 (835)
Q Consensus 526 ~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 604 (835)
.|+..|..+...|...|++++|+..|++.++....++...+..+..++...|++++|..+|+... .+.|+ ...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---KKNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCcchHHHHHH
Confidence 46788999999999999999999999999986433777788788889999999999999999887 56784 788999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-H-------HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC--CCCchHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPT-A-------EVWCALLGACRVHSNKELGEIVAKKLLELDPG--NPGNYVLISN 673 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~-------~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~ 673 (835)
++.++.+.|++++|++.+++. ...|+ + .+|..+...+...|+.+.|+..++++++++|+ ++..|..++.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999887 44453 4 45777888888999999999999999999999 9999999999
Q ss_pred HHHhcCCc
Q 043955 674 VFAASRKW 681 (835)
Q Consensus 674 ~y~~~g~~ 681 (835)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998887
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=1.7e-09 Score=116.76 Aligned_cols=232 Identities=13% Similarity=0.018 Sum_probs=145.3
Q ss_pred HHHHHHhcCChhhHHHHHHhcCC-----C----CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh
Q 043955 402 IVDVYGKCGNIDYSRNVFESIES-----K----DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAA 472 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~ 472 (835)
....|...|++++|...|++... + ...+|..+...|...|++++|+..|.+....-...+. +
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--Y------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--T-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--c-------
Confidence 45556666777777766665532 1 1245566666666777777777666665541100000 0
Q ss_pred hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhcCC
Q 043955 473 SSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLHGR 543 (835)
Q Consensus 473 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~ 543 (835)
......+++.+...|...|++++|...|++..+ ++ ..+|+.+...|...|+
T Consensus 180 --------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 180 --------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 000123456677778888888888888776542 11 1367778888888888
Q ss_pred hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC--CC-ChhHHHHHHHHHhhcCC-
Q 043955 544 GKVAIDLFYKMEAE----SFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQL--DP-WPEHYACLVDLLGRANH- 614 (835)
Q Consensus 544 ~~~Al~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i--~p-~~~~y~~lv~~l~r~g~- 614 (835)
+++|++.|++..+. +..|+. .++..+...+...|++++|..+|+.......- .| ....+..+..++...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 88888888887762 232443 45777777788888888888888766532111 12 23345667777888887
Q ss_pred --HHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 615 --LEEAYQFVRSMQIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 615 --~~eA~~~~~~m~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
+++|++++++.+..|+.. ++..|...+...|+.+.|...+++++++..
T Consensus 320 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 778888888775555433 555666667777777777777777766544
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=1.7e-09 Score=112.80 Aligned_cols=181 Identities=9% Similarity=0.089 Sum_probs=149.3
Q ss_pred hcCCh-------hhHHHHhhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcc
Q 043955 509 RCGAL-------DIANKVFNCVQT----KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI--TFLALLYACSH 575 (835)
Q Consensus 509 k~g~~-------~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~--t~~~ll~a~~~ 575 (835)
+.|++ ++|..+|++..+ .+...|..++..+...|+.++|.++|++.++ +.|+.. .|..+...+.+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHH
Confidence 45886 899999987543 3567999999999999999999999999998 677643 78888888999
Q ss_pred cCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHh-hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLG-RANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGE 651 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~-r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~ 651 (835)
.|.+++|+.+|+... .+.| +...|...+.+.. ..|++++|.+.++++ ...| ++..|..++......|+.+.|+
T Consensus 147 ~~~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 147 AEGIKSGRMIFKKAR---EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHCHHHHHHHHHHHH---TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred hcCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999887 4455 4555655544433 379999999999987 3334 5679999999999999999999
Q ss_pred HHHHHHHhc---CCC-CCCchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 652 IVAKKLLEL---DPG-NPGNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 652 ~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
.+++++++. .|+ +...|..+++.+...|++++|..+.+.+.+.
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999995 554 5668888999999999999999998777653
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=4.3e-10 Score=124.97 Aligned_cols=176 Identities=10% Similarity=0.003 Sum_probs=154.1
Q ss_pred hhhHHHHhhhCC---CCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHH
Q 043955 513 LDIANKVFNCVQ---TKDLILWTSMINANGLHGRG-KVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLE 587 (835)
Q Consensus 513 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 587 (835)
+++|...++... ..+...|..+...|...|++ ++|++.|++.++ ..|+ ...+..+..++...|++++|..+|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555433 34778999999999999999 999999999998 5676 5678889999999999999999999
Q ss_pred HhhhcCCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc--------Cchh
Q 043955 588 IMRCDYQLDPWPEHYACLVDLLGRA---------NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH--------SNKE 648 (835)
Q Consensus 588 ~m~~~~~i~p~~~~y~~lv~~l~r~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~--------~~~~ 648 (835)
... .+.|+...+..+..+|.+. |++++|++.+++. ...| +...|..|..++... |+.+
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887 6678888999999999999 9999999999987 5556 467899999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 649 LGEIVAKKLLELDP---GNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 649 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.|+..++++++++| +++..|..++.+|...|++++|.+..+...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999876654
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=5.8e-10 Score=106.07 Aligned_cols=157 Identities=14% Similarity=-0.028 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACS 574 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~ 574 (835)
.+..+...|.+.|++++|...|+++.+ .+...|..+...|...|+.++|++.|+++.+. .| +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 344555555666666666666655543 23445555555555555555555555555542 22 2233444444444
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
..|++++|..+|+.+... .| .+..+|..+...+...|+.+.|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~-------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NP-------------------------------INFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CT-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---Cc-------------------------------HhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 445555555555444322 22 23344444445555555555555555
Q ss_pred HHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 655 KKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 655 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
+++++..|+++..+..++.+|...|++++|.+..+..
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555555555555555554433
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=6.6e-11 Score=123.46 Aligned_cols=50 Identities=8% Similarity=-0.059 Sum_probs=22.8
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
...+..+.+...++++.+..|.++..+..|+.+|...|++++|.+..+..
T Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ---CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344455555566666666666666666666666666666666655443
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.11 E-value=3.1e-10 Score=118.35 Aligned_cols=202 Identities=15% Similarity=0.082 Sum_probs=160.6
Q ss_pred hhhhHhHHHHhhcccchhhHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---------
Q 043955 462 SITLVSALSAASSLSILKKGKELNGFIIRK-------GFNLEGSVASSLVDMYARCGALDIANKVFNCVQT--------- 525 (835)
Q Consensus 462 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--------- 525 (835)
..++..+...+...|+++.|..++..+.+. .......++..+...|...|++++|...|++...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345667777888899999999999988874 3344567788899999999999999999987642
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcC---
Q 043955 526 --KDLILWTSMINANGLHGRGKVAIDLFYKMEAE------SFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDY--- 593 (835)
Q Consensus 526 --~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~------g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 593 (835)
....+|..+...|...|++++|+..|+++.+. +-.|+. ..+..+...+...|++++|..+|+.+....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 13467889999999999999999999999874 223443 457778888999999999999999876431
Q ss_pred --CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-------------------------------------------
Q 043955 594 --QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-Q------------------------------------------- 626 (835)
Q Consensus 594 --~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~------------------------------------------- 626 (835)
+..| ....+..++.++.+.|++++|.+.++++ .
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1134 3677889999999999999999988776 1
Q ss_pred ------CCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 627 ------IEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 627 ------~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
..|+ ..+|..|..++...|+.+.|...+++++++.|+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 2243 347888889999999999999999999999875
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=1.7e-09 Score=102.73 Aligned_cols=170 Identities=16% Similarity=0.069 Sum_probs=125.1
Q ss_pred hhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHH
Q 043955 463 ITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANG 539 (835)
Q Consensus 463 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 539 (835)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556667788899999999998877643 3457788999999999999999999999765 346788999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHH
Q 043955 540 LHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 540 ~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
..|++++|++.|+++... .+.+...+..+..++...|++++|..+|+.+.+. .|
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~---------------------- 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP---------------------- 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT----------------------
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc----------------------
Confidence 999999999999999884 2334556666667777777777777777766532 22
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 620 QFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 620 ~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.+..+|..+...+...|+.+.|...++++++++|+++...
T Consensus 142 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 142 ---------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 1234555555566666666666666666666666665443
No 80
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=2e-10 Score=105.63 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=108.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc
Q 043955 535 INANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRA 612 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~ 612 (835)
...+...|+.++|++.|++... ..|+. ..+..+...+...|++++|.++|+... .+.| +...|..++.++.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---NVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc
Confidence 3445556777778877777665 34543 345667777888888888888888776 4567 478888888999999
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHH-HHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 613 NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEI-VAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 613 g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
|++++|++.+++. .+.| ++.+|..|...+...|+.+.|.. ..+++++++|+++..|.+.+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999888877 5667 46688888888888998876555 4699999999999999999999988885
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.02 E-value=3.8e-08 Score=105.66 Aligned_cols=263 Identities=13% Similarity=0.000 Sum_probs=156.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcC----CCCch----hHHHHHHHHHhCCChHHHHHHHHHHhhcCCc-CChhhhHhHH
Q 043955 399 LNAIVDVYGKCGNIDYSRNVFESIE----SKDVV----SWTSMISSYVHNGLANEALELFYLMNEANVE-SDSITLVSAL 469 (835)
Q Consensus 399 ~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~----~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~-p~~~t~~~ll 469 (835)
...+...+...|++++|...+++.. ..+.. .++.+...|...|++++|...+++....... ++...
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 91 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY----- 91 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 3344455556677777766665432 11211 3444455566666777776666665542110 01100
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC----------C-ChhHHHHHHHHH
Q 043955 470 SAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT----------K-DLILWTSMINAN 538 (835)
Q Consensus 470 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~ 538 (835)
.....+.+...|...|++++|...|++... + ....+..+...|
T Consensus 92 --------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 92 --------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp --------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 012234566667777777777777765431 1 123556677777
Q ss_pred HhcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHH----HHHHHH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFA--P--DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYA----CLVDLL 609 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~--P--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~----~lv~~l 609 (835)
...|++++|...+++.....-. | ...++..+...+...|++++|..+++.......-... ..... ..+.++
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 7888888888888887653211 1 1234566666777888888888888776533111111 11111 233456
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC------CchHHHHHHHHh
Q 043955 610 GRANHLEEAYQFVRSM-QIEPT-----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP------GNYVLISNVFAA 677 (835)
Q Consensus 610 ~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~ 677 (835)
.+.|++++|.+.+++. ...|. ...+..+..++...|+.+.|...++++++..+... ..+..++.+|..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 6888888888888877 22221 22456666777778888888888888877654322 356778888999
Q ss_pred cCCchHHHHHHHHHH
Q 043955 678 SRKWKDVEQVRMRMR 692 (835)
Q Consensus 678 ~g~~~~a~~~~~~m~ 692 (835)
.|++++|....+...
T Consensus 306 ~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 306 AGRKSDAQRVLLDAL 320 (373)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 999999887765543
No 82
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.01 E-value=1.6e-09 Score=117.03 Aligned_cols=289 Identities=7% Similarity=-0.019 Sum_probs=188.7
Q ss_pred hccccCchHHHHHHHHHHHhCC---Cch--hHHHHHHHHH--HhcCChhhHH-----------HHHHhcCC-C-CchhHH
Q 043955 372 CSGLKCMSQTKEIHGYIIRKGL---SDL--VILNAIVDVY--GKCGNIDYSR-----------NVFESIES-K-DVVSWT 431 (835)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~---~~~--~~~~~li~~y--~k~g~~~~A~-----------~~f~~~~~-~-~~~~~~ 431 (835)
+.+.++++.|..+...+.+... .+. .++-.++..- .-.+.++.+. +.|+.+.. + +...+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 4556777888887777765421 121 1333333321 1223333333 55555432 1 111111
Q ss_pred ------HHHHHHHhCCChHHHHHHHHHHhhcCC-cCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 043955 432 ------SMISSYVHNGLANEALELFYLMNEANV-ESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLV 504 (835)
Q Consensus 432 ------~li~~~~~~g~~~~Al~lf~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 504 (835)
.....+...|++++|+..|++....-. .||... ...++..+.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~a~~~~~lg 150 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-------------------------------KAEFFFKMS 150 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH-------------------------------HHHHHHHHH
Confidence 133445667777777777777665211 122111 123556777
Q ss_pred HHHHhcCChhhHHHHhhhCCC-----C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQT-----K-----DLILWTSMINANGLHGRGKVAIDLFYKMEAESF-APDH----ITFLAL 569 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~-----~-----~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~Pd~----~t~~~l 569 (835)
..|...|++++|...|++..+ + ...+++.+...|...|++++|++.|++..+..- .+|. .++..+
T Consensus 151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 788888888888887776441 1 235788999999999999999999999876311 1222 467888
Q ss_pred HHHhcccCcHHHHHHHHHHhhhc---CCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-----CCCHH-HHHHHH
Q 043955 570 LYACSHSGLINEGKKFLEIMRCD---YQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI-----EPTAE-VWCALL 638 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~---~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-----~p~~~-~~~~ll 638 (835)
...+...|++++|..+|+....- .+..| ....+..++.++.+.|++++|.+.+++. .+ .|... .+..|.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999999999977642 12325 3678999999999999999999999876 11 22222 345566
Q ss_pred HHHhhcCc---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 639 GACRVHSN---KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 639 ~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
..+...|+ .+.|...+++. ...|.....+..|+.+|...|++++|.+..+...
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777788 67777777666 4445556678899999999999999999877654
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.97 E-value=8.9e-08 Score=103.01 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=139.8
Q ss_pred HHHHHHhcCChhhHHHHHHhcCC-----CC----chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHh
Q 043955 402 IVDVYGKCGNIDYSRNVFESIES-----KD----VVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAA 472 (835)
Q Consensus 402 li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~ 472 (835)
....+...|++++|...|++... +| ..++..+...|...|++++|+..+.+....- +...
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--~~~~--------- 175 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY--QNHP--------- 175 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTST---------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH--HhCC---------
Confidence 34445556666666666655432 11 2345555556666666666666666554311 0000
Q ss_pred hcccchhhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhcC
Q 043955 473 SSLSILKKGKELNGFIIRKGFN-LEGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLHG 542 (835)
Q Consensus 473 ~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g 542 (835)
+.. ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|
T Consensus 176 -------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 176 -------------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 000 0133456777788888888888887765442 11 246777888888888
Q ss_pred ChHHHHHHHHHHHHC---CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC--CC-ChhHHHHHHHHHhhcCC-
Q 043955 543 RGKVAIDLFYKMEAE---SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQL--DP-WPEHYACLVDLLGRANH- 614 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~---g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i--~p-~~~~y~~lv~~l~r~g~- 614 (835)
++++|++.|++..+. ...|+ ..++..+..++.+.|+.++|..+++.......- .| ....+..+..++...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 888888888887761 01233 355667777888888888888888876643322 22 24456667777777777
Q ss_pred --HHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHhc
Q 043955 615 --LEEAYQFVRSMQIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 615 --~~eA~~~~~~m~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l 660 (835)
+++|++.+++.+..|+.. .+..|...+...|+.+.|...+++++++
T Consensus 317 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 317 RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 788888887765444433 4555556666777777777777666544
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=7.3e-09 Score=107.08 Aligned_cols=164 Identities=9% Similarity=-0.062 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC------
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLH-GRGKVAIDLFYKMEAESFAPD------ 562 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~g~~Pd------ 562 (835)
+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++ +.|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHH
Confidence 445556666666666666666654432 11 34677788888885 888888888888776 2231
Q ss_pred -HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH---
Q 043955 563 -HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP-----EHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE--- 632 (835)
Q Consensus 563 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~--- 632 (835)
..++..+...+...|++++|..+|+.......-.+.. ..|..++.++...|++++|...+++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356777778888888888888888776432111111 25677778888888888888888887 5555422
Q ss_pred ---HHHHHHHHHh--hcCchhHHHHHHHHHHhcCCCC
Q 043955 633 ---VWCALLGACR--VHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 633 ---~~~~ll~a~~--~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.+..|+.++. ..++.+.|...++++++++|.+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2344555554 3456777888888888888865
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=5.3e-09 Score=107.00 Aligned_cols=221 Identities=13% Similarity=0.077 Sum_probs=153.0
Q ss_pred hcccchhhHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----------CChhHHHHH
Q 043955 473 SSLSILKKGKELNGFIIRK-------GFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-----------KDLILWTSM 534 (835)
Q Consensus 473 ~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~l 534 (835)
...|+++.|..++...++. ..+....++..+...|...|++++|...|++..+ ....+|+.+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766652 2223466788899999999999999999886541 134578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcC----C-CCC-ChhH
Q 043955 535 INANGLHGRGKVAIDLFYKMEAE------SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDY----Q-LDP-WPEH 601 (835)
Q Consensus 535 i~~~~~~g~~~~Al~l~~~m~~~------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-i~p-~~~~ 601 (835)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+|+.+.+.. + -.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998873 11243 3567778888899999999999998876431 1 134 3677
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHhhcCch------hHHHHHHHHHHhcCCCC
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-Q---------IEPT-AEVWCALLGACRVHSNK------ELGEIVAKKLLELDPGN 664 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~---------~~p~-~~~~~~ll~a~~~~~~~------~~a~~~~~~~~~l~p~~ 664 (835)
+..++.++.+.|++++|.++++++ . ..|. ...|..+.......+.. ..+....+.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999888776 1 2332 22454444444333332 23333333333344566
Q ss_pred CCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 665 PGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 665 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..+..|+.+|...|++++|.+..+...+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999998876543
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=6.8e-08 Score=97.87 Aligned_cols=187 Identities=12% Similarity=0.026 Sum_probs=117.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD----HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEH 601 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~ 601 (835)
+...+-.+...+.+.|++++|+..|+++++. .|+ ...+..+..++...|++++|...|+...+.+.-.|. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3444445555555556666666666655552 333 234445555555566666666666555544322232 344
Q ss_pred HHHHHHHHhh--------cCCHHHHHHHHHhC-CCCCC-HHH-----------------HHHHHHHHhhcCchhHHHHHH
Q 043955 602 YACLVDLLGR--------ANHLEEAYQFVRSM-QIEPT-AEV-----------------WCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 602 y~~lv~~l~r--------~g~~~eA~~~~~~m-~~~p~-~~~-----------------~~~ll~a~~~~~~~~~a~~~~ 654 (835)
+..++.++.+ .|++++|.+.+++. ...|+ ... +..+...+...|+.+.|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5555555555 56666666555554 12221 112 245567788899999999999
Q ss_pred HHHHhcCCCCC---CchHHHHHHHHhc----------CCchHHHHHHHHHHcCCCccCCceeEEEECCEEEEEEeCCCCC
Q 043955 655 KKLLELDPGNP---GNYVLISNVFAAS----------RKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNKIHSFIARDKSH 721 (835)
Q Consensus 655 ~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h 721 (835)
+++++..|+++ ..+..++.+|... |++++|.+..+...+. .| .+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~----~p-------------------~~ 228 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI----FP-------------------DS 228 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH----CT-------------------TC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH----CC-------------------CC
Confidence 99999999855 4788999999977 9999999998776652 23 45
Q ss_pred cCcHHHHHHHHHHHHHh
Q 043955 722 SESDEIYKKLAEITEKL 738 (835)
Q Consensus 722 p~~~~i~~~l~~l~~~~ 738 (835)
|...+....|.++..++
T Consensus 229 ~~~~~a~~~l~~~~~~~ 245 (261)
T 3qky_A 229 PLLRTAEELYTRARQRL 245 (261)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66677777888877776
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=4.9e-09 Score=96.15 Aligned_cols=116 Identities=9% Similarity=0.006 Sum_probs=99.6
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHS 645 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~ 645 (835)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.+++. .+.| ++.+|..|..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3455677899999999998765 55673 566778999999999999999999988 6667 5668999999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHH
Q 043955 646 NKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
+.+.|+..++++++++|+++.+|..|+.+|...|++++|.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999999999999999999999999987764
No 88
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.87 E-value=1.1e-07 Score=102.37 Aligned_cols=227 Identities=11% Similarity=-0.009 Sum_probs=160.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCC-cCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 043955 433 MISSYVHNGLANEALELFYLMNEANV-ESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCG 511 (835)
Q Consensus 433 li~~~~~~g~~~~Al~lf~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 511 (835)
....+...|++++|+..|++....-. .+|... ...++..+...|...|
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-------------------------------KAEFHFKVAEAYYHMK 155 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-------------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-------------------------------HHHHHHHHHHHHHHcC
Confidence 34456778899999998888765311 122211 1234566777888888
Q ss_pred ChhhHHHHhhhCCC-----C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhccc
Q 043955 512 ALDIANKVFNCVQT-----K-----DLILWTSMINANGLHGRGKVAIDLFYKMEAE----SFAPD-HITFLALLYACSHS 576 (835)
Q Consensus 512 ~~~~A~~~f~~~~~-----~-----~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~ 576 (835)
+++.|...|++..+ + ...+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...
T Consensus 156 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 88888777765431 1 2457889999999999999999999998762 11111 24677888899999
Q ss_pred CcHHHHHHHHHHhhhcCC--CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCCHH-HHHHHHHHHhhcCc
Q 043955 577 GLINEGKKFLEIMRCDYQ--LDP-WPEHYACLVDLLGRANHLEEAYQFVRSM----QI--EPTAE-VWCALLGACRVHSN 646 (835)
Q Consensus 577 g~~~~a~~~~~~m~~~~~--i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~--~p~~~-~~~~ll~a~~~~~~ 646 (835)
|++++|..+|+....... ..| ....+..++.++.+.|++++|.+.+++. +- .|... .+..|...+...++
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999999998764211 234 3677889999999999999999999886 22 23332 45555556667777
Q ss_pred ---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 647 ---KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 647 ---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
.+.|...+++ ....|.....+..|+.+|...|++++|.+..+..
T Consensus 316 ~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 316 ERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665 2233444566788999999999999998876654
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.84 E-value=2.1e-08 Score=103.65 Aligned_cols=195 Identities=10% Similarity=-0.015 Sum_probs=141.1
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhcCChHHH
Q 043955 477 ILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT-----KD----LILWTSMINANGLHGRGKVA 547 (835)
Q Consensus 477 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 547 (835)
+++.|...+..+ ...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467776666554 4568889999999999976542 12 46899999999999999999
Q ss_pred HHHHHHHHHCCCCCC-------HHHHHHHHHHhccc-CcHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCH
Q 043955 548 IDLFYKMEAESFAPD-------HITFLALLYACSHS-GLINEGKKFLEIMRCDYQLDPW----PEHYACLVDLLGRANHL 615 (835)
Q Consensus 548 l~l~~~m~~~g~~Pd-------~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~ 615 (835)
+..|++.++. .|+ ..++..+..++... |++++|..+|+...+.+.-..+ ...|..++.++.+.|++
T Consensus 97 ~~~~~~Al~l--~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQI--FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999998762 221 24678888899996 9999999999987643211111 45688899999999999
Q ss_pred HHHHHHHHhC-CCCCC---H-----HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc-----hHHHHHHHH--hcC
Q 043955 616 EEAYQFVRSM-QIEPT---A-----EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGN-----YVLISNVFA--ASR 679 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p~---~-----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g 679 (835)
++|++.+++. ...|+ . ..|..+..++...|+.+.|+..++++++++|+.+.. +..|...|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999887 33332 1 146666677888899999999999999999987654 233455554 456
Q ss_pred CchHHHHHH
Q 043955 680 KWKDVEQVR 688 (835)
Q Consensus 680 ~~~~a~~~~ 688 (835)
+|++|.+..
T Consensus 255 ~~~~A~~~~ 263 (292)
T 1qqe_A 255 QLSEHCKEF 263 (292)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777665
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.83 E-value=6e-07 Score=96.19 Aligned_cols=260 Identities=12% Similarity=-0.043 Sum_probs=119.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHhccccCchHHHHHHHHHHHhCCC--ch----hHHHHHHH
Q 043955 335 AGYAQNNCHLKALELFRTVQLEGLDADVM----IIGSVLMACSGLKCMSQTKEIHGYIIRKGLS--DL----VILNAIVD 404 (835)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~--~~----~~~~~li~ 404 (835)
..+...|++++|...+++........+.. .+..+-..+...|+++.+...+...++.... +. .....+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556677777777777665543211211 1222223344455555555555554442211 11 13445556
Q ss_pred HHHhcCChhhHHHHHHhcCC-------C----CchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhh
Q 043955 405 VYGKCGNIDYSRNVFESIES-------K----DVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAAS 473 (835)
Q Consensus 405 ~y~k~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~ 473 (835)
.|...|++++|...|++... + ....+..+...|...|++++|...+++...........
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------- 171 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ---------- 171 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG----------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH----------
Confidence 66666666666666554421 1 11233445555666666666666666655421111000
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC----CC-ChhHHHH-----HHHHHHhcCC
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ----TK-DLILWTS-----MINANGLHGR 543 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~-~~~~~~~-----li~~~~~~g~ 543 (835)
.....+..+...+...|++++|...+++.. .+ +...|.. ++..+...|+
T Consensus 172 ---------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 172 ---------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp ---------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 011223334444555555555555544322 11 1112221 1222445555
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhhhc---CCCCCC-hhHHHHHHHHHhhcCCHH
Q 043955 544 GKVAIDLFYKMEAESFAPD---HITFLALLYACSHSGLINEGKKFLEIMRCD---YQLDPW-PEHYACLVDLLGRANHLE 616 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~i~p~-~~~y~~lv~~l~r~g~~~ 616 (835)
.++|...+++.......++ ...+..+..++...|+.++|...++..... .+..++ .+.+..+..++.+.|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 5555555555443211110 122344444555556666666555544321 121122 235555666666666666
Q ss_pred HHHHHHHhC
Q 043955 617 EAYQFVRSM 625 (835)
Q Consensus 617 eA~~~~~~m 625 (835)
+|.+.+++.
T Consensus 311 ~A~~~l~~a 319 (373)
T 1hz4_A 311 DAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=3e-09 Score=123.71 Aligned_cols=167 Identities=9% Similarity=-0.069 Sum_probs=102.6
Q ss_pred HhcCChhhHHHHhhhCC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcc
Q 043955 508 ARCGALDIANKVFNCVQ-----------TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSH 575 (835)
Q Consensus 508 ~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~ 575 (835)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 45566666666665543 23455666666666666777777777766666 34443 455556666666
Q ss_pred cCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEI 652 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~ 652 (835)
.|++++|...|+... .+.| +...|..+..++.+.|++++ ++.+++. ...| +...|..|..++...|+.+.|+.
T Consensus 480 ~g~~~~A~~~~~~al---~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVL---DTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHH---HHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 677777777666655 3455 35666666666666776666 6666655 3444 34466666666666677777777
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 653 VAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
.++++++++|+++.+|..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777666666666666655554
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.82 E-value=7.9e-08 Score=97.38 Aligned_cols=186 Identities=11% Similarity=-0.018 Sum_probs=139.0
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT--K-D---LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD----HIT 565 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd----~~t 565 (835)
+....-.+...|.+.|++++|...|+.+.+ | + ...|..+...|.+.|++++|+..|++.++. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 345556677788899999999999998764 2 3 567888999999999999999999999984 443 234
Q ss_pred HHHHHHHhcc--------cCcHHHHHHHHHHhhhcCCCCCCh-hHH--------------HHHHHHHhhcCCHHHHHHHH
Q 043955 566 FLALLYACSH--------SGLINEGKKFLEIMRCDYQLDPWP-EHY--------------ACLVDLLGRANHLEEAYQFV 622 (835)
Q Consensus 566 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~i~p~~-~~y--------------~~lv~~l~r~g~~~eA~~~~ 622 (835)
+..+..++.. .|++++|...|+...+.+.-.|.. ... ..++.+|.+.|++++|.+.+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5566667777 899999999999888654333322 222 56789999999999999999
Q ss_pred HhC----CCCCC-HHHHHHHHHHHhhc----------CchhHHHHHHHHHHhcCCCCCC---chHHHHHHHHhcCCchH
Q 043955 623 RSM----QIEPT-AEVWCALLGACRVH----------SNKELGEIVAKKLLELDPGNPG---NYVLISNVFAASRKWKD 683 (835)
Q Consensus 623 ~~m----~~~p~-~~~~~~ll~a~~~~----------~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~ 683 (835)
+++ |-.|. ...|..+..++... |+.+.|...++++++..|+++. ++..+..++...|+.++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 887 43332 33666666677655 8899999999999999999864 34556666655555444
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=8.5e-08 Score=94.68 Aligned_cols=178 Identities=9% Similarity=-0.039 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHH
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQT--KD----LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI----TFLA 568 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~----t~~~ 568 (835)
.+..+...|.+.|++++|...|+.+.+ |+ ...|..+..+|.+.|++++|+..|++..+ ..|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHHH
Confidence 344455566667777777777766542 21 23566666677777777777777777666 344431 2222
Q ss_pred HHHHhcc------------------cCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043955 569 LLYACSH------------------SGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEP 629 (835)
Q Consensus 569 ll~a~~~------------------~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 629 (835)
+..++.. .|+.++|...|+.+.+. .|+ ...+.. +.+.+.+.+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a----~~~l~~~~~~~~--------- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDA----TKRLVFLKDRLA--------- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHH----HHHHHHHHHHHH---------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHH----HHHHHHHHHHHH---------
Confidence 2222222 34445555555444422 222 111110 000000000000
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC---CchHHHHHHHHhcCCchHHHHHHHHHHcCCC
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP---GNYVLISNVFAASRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 696 (835)
...-.+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|.+..+.+...+.
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0112344556788999999999999999999876 5689999999999999999999988887654
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.79 E-value=8.6e-08 Score=85.18 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
+|..+...|...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+|+.+... .| +...+..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 46667777777777777777777776632 223445555666666667777777777666532 23 34455556666
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 609 LGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.|...++++++++|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666665554 2222 3445555555555556666666666666655554
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=2.6e-08 Score=102.49 Aligned_cols=166 Identities=11% Similarity=-0.056 Sum_probs=128.9
Q ss_pred HhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC
Q 043955 519 VFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP 597 (835)
Q Consensus 519 ~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 597 (835)
.+......+...+..+...+.+.|+.++|+..|++... ..|+. ..+..+..++...|+.++|...++... ...|
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~---~~~p 182 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP---LQDQ 182 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC---GGGC
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc---hhhc
Confidence 33333344556677778888888999999999999888 56755 467777888889999999999998776 4456
Q ss_pred ChhHHHH-HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC--CCchHHHH
Q 043955 598 WPEHYAC-LVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN--PGNYVLIS 672 (835)
Q Consensus 598 ~~~~y~~-lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~ 672 (835)
+...... ..-.+.+.|+.++|.+.+++. ...| +...|..|..++...|+.+.|+..++++++.+|++ +..+..|+
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 5433322 333466778888888888776 4455 56688899999999999999999999999999988 88899999
Q ss_pred HHHHhcCCchHHHHHHH
Q 043955 673 NVFAASRKWKDVEQVRM 689 (835)
Q Consensus 673 ~~y~~~g~~~~a~~~~~ 689 (835)
.+|...|+.++|....+
T Consensus 263 ~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 263 EILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHH
Confidence 99999999999876543
No 96
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=2.3e-08 Score=91.35 Aligned_cols=102 Identities=7% Similarity=-0.053 Sum_probs=91.4
Q ss_pred cCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 592 DYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 592 ~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
...+.| +.+.+..++..+.+.|++++|++.+++. ...| ++..|..|..++...|+.+.|+..++++++++|+++.+|
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 347788 4788889999999999999999999988 5566 577999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 669 VLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 669 ~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..++.+|...|++++|.+..+...+
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998776655
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=6.8e-08 Score=110.21 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=124.8
Q ss_pred cCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHH
Q 043955 510 CGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKF 585 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~ 585 (835)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3788889999988764 3577899999999999999999999999998 5665 46788888899999999999999
Q ss_pred HHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CchhHHHHHHHHHHh
Q 043955 586 LEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH---SNKELGEIVAKKLLE 659 (835)
Q Consensus 586 ~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---~~~~~a~~~~~~~~~ 659 (835)
|+...+ +.| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++... |+.+.|...++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 998874 467 4788999999999999999999999987 4555 466888888999999 999999999999999
Q ss_pred cCCCCCCchHHHH
Q 043955 660 LDPGNPGNYVLIS 672 (835)
Q Consensus 660 l~p~~~~~~~~l~ 672 (835)
.+|++...|.+|+
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999888777
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=8e-08 Score=111.67 Aligned_cols=194 Identities=14% Similarity=0.014 Sum_probs=145.6
Q ss_pred hcccchhhHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcC
Q 043955 473 SSLSILKKGKELNGFIIR-------KGFNLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHG 542 (835)
Q Consensus 473 ~~~~~~~~a~~i~~~~~~-------~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 542 (835)
...+++++|.+.+..+++ ...+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 344455555555544441 1112345667778888999999999999998876 347789999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 043955 543 RGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
++++|++.|++.++ ..|+. ..+..+..++...|++++ ...|+... .+.| +...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVW---STNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHH---HhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 57765 567888889999999999 99999887 4578 47889999999999999999999
Q ss_pred HHHhC-CCCCCHH-HHHHHHHHHhhcCc-----hhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 621 FVRSM-QIEPTAE-VWCALLGACRVHSN-----KELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 621 ~~~~m-~~~p~~~-~~~~ll~a~~~~~~-----~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
.++++ ...|+.. .|..+..++...++ .+...++.+.+.++.|+++..+.+-.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 99998 6788754 77777777655554 45566667777777776666554443
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.73 E-value=1.4e-07 Score=96.19 Aligned_cols=204 Identities=10% Similarity=0.018 Sum_probs=129.4
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHhhcCCc---CChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHH
Q 043955 427 VVSWTSMISSYVHNGLANEALELFYLMNEANVE---SDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSL 503 (835)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 503 (835)
..+|..+...|...|++++|+..|++....... ++. +....++..+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~~~l 91 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH-------------------------------PAVAATLNNL 91 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc-------------------------------hHHHHHHHHH
Confidence 456777788888888888888888887652100 110 1123345666
Q ss_pred HHHHHhcCChhhHHHHhhhCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HH
Q 043955 504 VDMYARCGALDIANKVFNCVQT-----------KDLILWTSMINANGLHGRGKVAIDLFYKMEAE------SFAPDH-IT 565 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~------g~~Pd~-~t 565 (835)
...|...|++++|.+.|++... ....+|..+...|...|++++|+..|+++.+. +-.|+. .+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 7777777777777777765431 12457888888888889999999988888763 114433 46
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcC------CCCCC-hhHHHHHHHHHhh------cCCHHHHHHHHHhCC-CCCC-
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDY------QLDPW-PEHYACLVDLLGR------ANHLEEAYQFVRSMQ-IEPT- 630 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~i~p~-~~~y~~lv~~l~r------~g~~~eA~~~~~~m~-~~p~- 630 (835)
+..+...+...|++++|..+|+...+.. ...|. ...|..+...... ...+.++...++... ..|+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7778888889999999999998776421 12332 3334444433333 334666666666663 3343
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcC
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELD 661 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 661 (835)
..+|..|...+...|+.+.|...+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3478888889999999999999999998763
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=4.7e-08 Score=86.44 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=52.5
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 595 LDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 595 i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
|+|+ .+.|...+..|.+.|++++|++.+++. ...| ++.+|..+..++...|+.+.|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4443 444555555555555555555555554 3333 344555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCchHHHHHHHHH
Q 043955 672 SNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 672 ~~~y~~~g~~~~a~~~~~~m 691 (835)
+.+|...|++++|.+..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555554433
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.73 E-value=1.5e-06 Score=88.03 Aligned_cols=173 Identities=10% Similarity=-0.008 Sum_probs=117.7
Q ss_pred HHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043955 516 ANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRC 591 (835)
Q Consensus 516 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (835)
|...|++... ++..++..+..+|...|+.++|++++.+.+..|-.++. ..+...+..+...|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666542 45556667778888888888888888887665433344 3455666777888888888888888873
Q ss_pred cCCCCC-----ChhHHHHHHHH----HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhc-
Q 043955 592 DYQLDP-----WPEHYACLVDL----LGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLEL- 660 (835)
Q Consensus 592 ~~~i~p-----~~~~y~~lv~~----l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l- 660 (835)
..| +......+..+ ....+++++|..+++++ .-.|+...-..|++++...|+++.|+...+.++++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456 23333333333 33334888888888888 33455222233444667778999999988888777
Q ss_pred ---------CCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 661 ---------DPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 661 ---------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+|+|+.++..+..++...|+ +|.+++.++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 47777777777667777786 78888888876
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.72 E-value=1e-07 Score=84.76 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=110.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 641 (835)
.+..+...+...|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 4566777888999999999999988743 45 5778888999999999999999999887 3334 566888898999
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
...|+.+.|...++++++..|+++..+..++.+|...|++++|.+..+.+.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999877654
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=3.9e-07 Score=93.35 Aligned_cols=153 Identities=10% Similarity=0.058 Sum_probs=65.4
Q ss_pred CChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCc------
Q 043955 511 GALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGK--VAIDLFYKMEAESFAP-DHITFLALLYACSHSGL------ 578 (835)
Q Consensus 511 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~--~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~------ 578 (835)
++++++...++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++.+. .| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 44555555554443 234445555544444455444 555555555542 22 22333333333333333
Q ss_pred HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHH-HHHHHHhC-CCC---C-CHHHHHHHHHHHhhcCchhHHH
Q 043955 579 INEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEE-AYQFVRSM-QIE---P-TAEVWCALLGACRVHSNKELGE 651 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~e-A~~~~~~m-~~~---p-~~~~~~~ll~a~~~~~~~~~a~ 651 (835)
+++++++++.+. .+.| +...|.....++.+.|+..+ +.++.++. ... | ++..|..|..++...|+.+.|.
T Consensus 202 ~~eEl~~~~~aI---~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKI---VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHH---HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 444444444443 2234 23444444444444444222 33344433 111 1 3334444444444444444444
Q ss_pred HHHHHHHh-cCCCCCCch
Q 043955 652 IVAKKLLE-LDPGNPGNY 668 (835)
Q Consensus 652 ~~~~~~~~-l~p~~~~~~ 668 (835)
.+++++.+ +||-...+|
T Consensus 279 ~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHhccChHHHHHH
Confidence 44444443 444444333
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=3.7e-08 Score=93.04 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=52.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC--CCchHHHHHHHHhcCCchHHHHHHH
Q 043955 618 AYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN--PGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 618 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
|.+.+++. ...| ++..|..+..++...|+.+.|+..++++++++|+. +..+..|+.+|...|++++|....+
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 44444444 3345 45677777778888888888888888888888865 4478888888888888888777654
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=5.4e-08 Score=86.00 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=90.6
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 043955 559 FAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVW 634 (835)
Q Consensus 559 ~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 634 (835)
+.|+. ..+......+.+.|++++|.+.|+... .+.| +...|..++.+|.+.|++++|++.+++. .+.| ++..|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV---KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 55654 356667777778888888888887766 3456 4778888888888888888888888876 5556 45688
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 635 CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 635 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
..+..++...|+.+.|+..++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 88999999999999999999999999999988887777653
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=4.7e-08 Score=89.25 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=87.4
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
.+.| +...+..++..+.+.|++++|.+.+++. ...| ++..|..+..++...|+.+.|+..++++++++|+++..|..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 5677 4777888899999999999999999887 4455 67789889899999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHc
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++.+|...|++++|.+..+...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988776554
No 107
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.67 E-value=3.7e-07 Score=92.51 Aligned_cols=159 Identities=15% Similarity=0.040 Sum_probs=88.1
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHH
Q 043955 502 SLVDMYARCGALDIANKVFNCVQT-----KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-----DHITFLALLY 571 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-----d~~t~~~ll~ 571 (835)
.+...|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..| +..+...+..
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHHH
Confidence 444555556666666666655422 2344555566666666667777777776665 455 2444444444
Q ss_pred H--hcc--cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CC-CHHHHH
Q 043955 572 A--CSH--SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QI----------EP-TAEVWC 635 (835)
Q Consensus 572 a--~~~--~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~----------~p-~~~~~~ 635 (835)
+ ... .+...+|..+|+.+...+ |+......+..++.+.|++++|++.++.+ .. .| |+.+..
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 4 222 226667777776665432 33222222333566677777777776543 11 24 344554
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 636 ALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 636 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.++......|+ .|.+..+++.++.|++|..
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 55444444555 6677778888888877544
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.66 E-value=1e-07 Score=108.73 Aligned_cols=147 Identities=16% Similarity=0.069 Sum_probs=113.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA 618 (835)
.|+.++|++.|++..+ ..|+ ...+..+..++...|++++|.++|+... .+.| +...|..++.+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4788999999999987 5665 4678888889999999999999999887 5678 488999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc---CCchHHHHHHHHHH
Q 043955 619 YQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAAS---RKWKDVEQVRMRMR 692 (835)
Q Consensus 619 ~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~ 692 (835)
.+.+++. ...| +...|..+..++...|+.+.|...++++++++|+++..+..++.+|... |++++|.+..+...
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999887 4556 4668999999999999999999999999999999999999999999999 88888877765543
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.63 E-value=1.2e-07 Score=92.36 Aligned_cols=155 Identities=12% Similarity=-0.017 Sum_probs=114.4
Q ss_pred HHHHHhcCChhhHHHHhhhCCCC---ChhHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-
Q 043955 504 VDMYARCGALDIANKVFNCVQTK---DLILWTS----------------MINANGLHGRGKVAIDLFYKMEAESFAPDH- 563 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~----------------li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~- 563 (835)
...+.+.|++++|...|++.... +...|.. +...|...|++++|+..|++.++ ..|+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 34455677777777777766532 3345555 88899999999999999999998 56754
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCHH--HHHHHH
Q 043955 564 ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH--LEEAYQFVRSMQIEPTAE--VWCALL 638 (835)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~--~~eA~~~~~~m~~~p~~~--~~~~ll 638 (835)
..+..+..++...|++++|...|+... .+.| +...|..++.+|...|. .+++...++... .|++. .|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKIL---QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 567888888999999999999999887 4578 48888889988876654 445566665552 44443 444455
Q ss_pred HHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 639 GACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 639 ~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
.+....|+.+.|+..++++++++|++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 55667789999999999999999974
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.61 E-value=2.3e-07 Score=87.58 Aligned_cols=154 Identities=13% Similarity=0.011 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hc
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYA--CS 574 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a--~~ 574 (835)
...+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++... ..|+.. +..++.. +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 44566778899999999999999874 4678899999999999999999999999876 445433 2222221 11
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhhcCchhH
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT---AEVWCALLGACRVHSNKEL 649 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~~~~~~~ 649 (835)
..+...+|...|+... .+.| +...+..++.++.+.|++++|.+.++++ ...|+ ...|..|...+...|+.+.
T Consensus 86 ~~~~~~~a~~~~~~al---~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQEL---AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2222234677888776 4578 4888999999999999999999999887 55554 5589999999999999999
Q ss_pred HHHHHHHHHh
Q 043955 650 GEIVAKKLLE 659 (835)
Q Consensus 650 a~~~~~~~~~ 659 (835)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.60 E-value=1.8e-06 Score=84.08 Aligned_cols=172 Identities=10% Similarity=-0.078 Sum_probs=127.2
Q ss_pred hHHHHhhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----cHHHHHHHHHHh
Q 043955 515 IANKVFNCVQ-TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG----LINEGKKFLEIM 589 (835)
Q Consensus 515 ~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m 589 (835)
+|.+.|.+.. ..++.++..+...|...|+.++|++.|++..+.| +...+..+...+.. | +.++|..+|+..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4555555443 3467778888888888888888888888887754 44555566666666 5 788888888876
Q ss_pred hhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh----cCchhHHHHHHHHH
Q 043955 590 RCDYQLDPWPEHYACLVDLLGR----ANHLEEAYQFVRSM-QIEPT---AEVWCALLGACRV----HSNKELGEIVAKKL 657 (835)
Q Consensus 590 ~~~~~i~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~----~~~~~~a~~~~~~~ 657 (835)
.+. -++..+..|..+|.. .+++++|.+.+++. ...|. +..+..|...+.. .+|.+.|...++++
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 432 146677778888876 78899999888887 44453 6677777777776 77899999999999
Q ss_pred HhcCCCCCCchHHHHHHHHhc-C-----CchHHHHHHHHHHcCC
Q 043955 658 LELDPGNPGNYVLISNVFAAS-R-----KWKDVEQVRMRMRGSG 695 (835)
Q Consensus 658 ~~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 695 (835)
.++ |.++.++..|+.+|... | ++++|.+..++..+.|
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 988 77778889999998764 3 7888988887766644
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.56 E-value=1.3e-06 Score=90.62 Aligned_cols=220 Identities=10% Similarity=-0.031 Sum_probs=152.6
Q ss_pred hCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHH
Q 043955 439 HNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANK 518 (835)
Q Consensus 439 ~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 518 (835)
..|++++|.+++++..+.. +.. + +...++++.+...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998877531 111 1 11135666666665543 556888899999988
Q ss_pred HhhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhcccCcHHHHHH
Q 043955 519 VFNCVQT-----KD----LILWTSMINANGLHGRGKVAIDLFYKMEAES---FAPD--HITFLALLYACSHSGLINEGKK 584 (835)
Q Consensus 519 ~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g---~~Pd--~~t~~~ll~a~~~~g~~~~a~~ 584 (835)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...+.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876542 12 3478889999999999999999999876521 1222 2467778888888 99999999
Q ss_pred HHHHhhhcC---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCchhHHHH
Q 043955 585 FLEIMRCDY---QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QI---EPT----AEVWCALLGACRVHSNKELGEI 652 (835)
Q Consensus 585 ~~~~m~~~~---~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~a~~~~~~~~~a~~ 652 (835)
+|+.....+ +-.+ ....|..+..+|.+.|++++|++.+++. .+ .++ ...|..+...+...|+.+.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998776432 1111 1467888999999999999999999876 11 222 1245555566667799999999
Q ss_pred HHHHHHhcCCCCCCc-----hHHHHHHHHhcCCchHHHH
Q 043955 653 VAKKLLELDPGNPGN-----YVLISNVFAASRKWKDVEQ 686 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 686 (835)
.+++++ ++|..... ...+...| ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99987654 23444445 4566555544
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=3e-07 Score=83.22 Aligned_cols=100 Identities=12% Similarity=-0.018 Sum_probs=86.3
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 594 QLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 594 ~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
.+.| +...+..++..+.+.|++++|.+.+++. ...| ++..|..+..++...|+.+.|...++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 5667 4667777888899999999999999887 4455 56789888889999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHc
Q 043955 671 ISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++.+|...|++++|.+..+...+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998776654
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.54 E-value=4e-07 Score=93.60 Aligned_cols=161 Identities=9% Similarity=-0.061 Sum_probs=127.4
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 043955 494 NLEGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITF-LAL 569 (835)
Q Consensus 494 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~-~~l 569 (835)
+.+......+...+...|++++|...|++.. ..+...+..+...|.+.|+.++|+..|++... ..|+.... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 4455666778888889999999999998765 34677899999999999999999999999877 46765432 223
Q ss_pred HHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhhc
Q 043955 570 LYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT---AEVWCALLGACRVH 644 (835)
Q Consensus 570 l~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~~ 644 (835)
...+...|..++|...|+... ...| +.+.+..++.+|.+.|++++|++.++++ ...|+ ...|..|+..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al---~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQV---AENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHH---hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 334666777788888888776 4467 5888899999999999999999998887 44454 56899999999999
Q ss_pred CchhHHHHHHHHHHh
Q 043955 645 SNKELGEIVAKKLLE 659 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~ 659 (835)
|+.+.|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999988764
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.52 E-value=4.6e-05 Score=84.30 Aligned_cols=200 Identities=9% Similarity=-0.040 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHH-HHhhhC
Q 043955 445 EALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIAN-KVFNCV 523 (835)
Q Consensus 445 ~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~-~~f~~~ 523 (835)
.+..+|++++... .-++..|...+.-+...|+++.|+.+++..++. +.+..++.. |+.....++.. .+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 4556777766532 223444555555555667777888888877777 333333332 32222211111 111111
Q ss_pred C------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHhcccCcHHHHHHHHHHh
Q 043955 524 Q------------TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLA--LLYACSHSGLINEGKKFLEIM 589 (835)
Q Consensus 524 ~------------~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~--ll~a~~~~g~~~~a~~~~~~m 589 (835)
. ......|...+..+.++|..+.|..+|++. .. ..++...|.. .+.. ...++.+.|+.+|+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~-~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEY-YATGSRATPYNIFSSG 346 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHH-HHHCCSHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHH-HHCCChHHHHHHHHHH
Confidence 0 011246777888777788899999999988 32 1223333432 2221 1234688999999988
Q ss_pred hhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 590 RCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 590 ~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
.+.++-. ++.+...++.+.+.|..+.|..++++++ ....+|...+.--..+|+.+.+..++++.+
T Consensus 347 l~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8765333 4456667888888999999999999983 356688888888888888888887777665
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=3e-07 Score=91.94 Aligned_cols=138 Identities=10% Similarity=-0.006 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~ 608 (835)
+-.....+...|++++|.++|+.+.. ..|+.+....+...+.+.|++++|+.+|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 44466777788888888888888776 3476655555555778888899998888744321 1 221 3456778888
Q ss_pred HhhcCCHHHHHHHHHhC---CCCCC-H-HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 609 LGRANHLEEAYQFVRSM---QIEPT-A-EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 609 l~r~g~~~eA~~~~~~m---~~~p~-~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
+.+.|++++|++.+++. |.+|. . ..+..+..+++..|+.+.|...++++++.+|+ +..+..|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999988877 33354 3 36777778888899999999999999999997 666555544
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.52 E-value=1.2e-06 Score=86.45 Aligned_cols=185 Identities=11% Similarity=-0.002 Sum_probs=131.6
Q ss_pred hhHhHHHHhhcccchhhHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-Ch---hHHHHHH
Q 043955 464 TLVSALSAASSLSILKKGKELNGFIIRKGFNLE--GSVASSLVDMYARCGALDIANKVFNCVQT--K-DL---ILWTSMI 535 (835)
Q Consensus 464 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~---~~~~~li 535 (835)
.+......+...|+++.|...+..+++...... ...+..+...|.+.|++++|...|+++.+ | +. .+|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344455667888999999999999998644322 35778889999999999999999998763 3 22 2455555
Q ss_pred HHHHh------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC
Q 043955 536 NANGL------------------HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP 597 (835)
Q Consensus 536 ~~~~~------------------~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 597 (835)
..|.. .|+.++|+..|+++++ ..|+..... ++......+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~-------------~a~~~l~~~~~~----- 145 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTT-------------DATKRLVFLKDR----- 145 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHH-------------HHHHHHHHHHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHH-------------HHHHHHHHHHHH-----
Confidence 55554 5789999999999998 567653211 111111111100
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.......++..|.+.|++++|...++++ ...|+ ...|..+..++...|+.+.|+..++++....|++...+
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 0122345788899999999999998887 33343 24688888899999999999999999999999876553
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.49 E-value=6.6e-07 Score=86.98 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHhcccCcHHHHHHHHHHhhhc
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHI-TFLA----------------LLYACSHSGLINEGKKFLEIMRCD 592 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~ 592 (835)
.+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|+...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-- 81 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL-- 81 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 344556677889999999999999998 678764 4555 7788899999999999999887
Q ss_pred CCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc--hhHHHHHHHHHHhcCCCCCCc
Q 043955 593 YQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN--KELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 593 ~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~--~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.+.| +...|..++.++...|++++|.+.+++. .+.| ++.+|..|..++...|+ .+.++..+++++...|.+ ..
T Consensus 82 -~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a 159 (208)
T 3urz_A 82 -QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YA 159 (208)
T ss_dssp -HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HH
T ss_pred -HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HH
Confidence 4578 5889999999999999999999999988 5666 45688888877755543 445566666665444332 23
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 668 YVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 668 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..++..+...|++++|....++..+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55678888889999999998876654
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=1.4e-07 Score=96.65 Aligned_cols=190 Identities=8% Similarity=-0.073 Sum_probs=136.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQ---TKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLY 571 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~ 571 (835)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556777888999999999999998765 34778899999999999999999999999987 56654 56778888
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHH
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELG 650 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a 650 (835)
++...|++++|...|+...+ +.|+ ...+...+....+.++..+... .......++..+...| +... .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 99999999999999987763 3342 1122222222222222222222 2223344455554444 3333 6889999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHhc-CCchHHHHHHHHHHc
Q 043955 651 EIVAKKLLELDPGNPGNYVLISNVFAAS-RKWKDVEQVRMRMRG 693 (835)
Q Consensus 651 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 693 (835)
...++++++++|++......+..++... +++++|.++.....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999888888888888877 788999988876654
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.49 E-value=6.5e-06 Score=84.26 Aligned_cols=147 Identities=15% Similarity=0.195 Sum_probs=100.4
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHH--HHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC---
Q 043955 542 GRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLIN--EGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH--- 614 (835)
Q Consensus 542 g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~--- 614 (835)
++.++++++++++.+ ..| |...|..-.....+.|.++ +++++++.+.+ ..| +-..|..-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 124 FDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccch
Confidence 567788888888877 344 4456666666666677766 77777777773 456 45556555666666665
Q ss_pred ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc-hhHHHHHHHHHHhcC---CCCCCchHHHHHHHHhcCCchHHH
Q 043955 615 ---LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN-KELGEIVAKKLLELD---PGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 615 ---~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
+++++++++++ ...| |...|+-+.......|+ .+.....++++++++ |.++.++..|+.+|...|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 77788777766 4455 56678777777766665 344556777777766 677777788888888888888888
Q ss_pred HHHHHHHc
Q 043955 686 QVRMRMRG 693 (835)
Q Consensus 686 ~~~~~m~~ 693 (835)
++.+.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777654
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=1.2e-06 Score=85.38 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=95.0
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRV 643 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 643 (835)
+..+...+...|++++|...|+.. +.|+...|..++.++.+.|++++|++.+++. ...| +..+|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445566677777777777644 3556677777777777888888888777766 3334 45678888888888
Q ss_pred cCchhHHHHHHHHHHhcCCCCC----------------CchHHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 644 HSNKELGEIVAKKLLELDPGNP----------------GNYVLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 644 ~~~~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
.|+.+.|...+++++++.|++. ..+..++.+|...|++++|.+..+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8999999999999999888877 88899999999999999999988776653
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=4e-06 Score=81.49 Aligned_cols=143 Identities=10% Similarity=-0.070 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcH
Q 043955 501 SSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLI 579 (835)
Q Consensus 501 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~ 579 (835)
..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++.... .|+ ...+..+..++...|++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccH
Confidence 445666777788888888888777777777777888888888888888888777763 343 34566666667777777
Q ss_pred HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 580 NEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTA-EVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 580 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
++|...|+...+...-.+... +...| +...|+. .+|..+..++...|+.+.|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777776653221111000 00000 0123322 356666666777777777777777777
Q ss_pred hcCCCC
Q 043955 659 ELDPGN 664 (835)
Q Consensus 659 ~l~p~~ 664 (835)
+++|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 777765
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.46 E-value=3e-07 Score=83.87 Aligned_cols=96 Identities=8% Similarity=0.019 Sum_probs=51.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+..++...|++++|..+|+... .+.| +...|..++.+|.+.|++++|++.++++ .+.| ++..|..+..++.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLC---IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 3334444444455555555554444 2344 3445555555555555555555555554 3334 2345666666666
Q ss_pred hcCchhHHHHHHHHHHhcCCCC
Q 043955 643 VHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
..|+.+.|+..+++++++.|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 6666666666666666666654
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-06 Score=77.37 Aligned_cols=112 Identities=14% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+...+...|++++|..+|+... ...| +...+..++.++.+.|++++|++.++++ ...| +..+|..+..++.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3334444444444444444444433 2233 3445555555666666666666655554 2233 4567777778888
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCC
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRK 680 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 680 (835)
..|+.+.|+..++++++++|+++..+..++.+|...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88889999999999999999998888999888887664
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.44 E-value=4.5e-05 Score=84.38 Aligned_cols=367 Identities=11% Similarity=0.010 Sum_probs=203.2
Q ss_pred cC-ChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC-hHHHH
Q 043955 36 NG-EPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDFIVNSLVAMYAKCYD-FRKAR 113 (835)
Q Consensus 36 ~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A~ 113 (835)
.| +...|..+|+++... -|. ++.+.+.+||+..+.. .|++.+|..-+..-.+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377777787777653 122 7888888888887774 4677788877776666553 34456
Q ss_pred HHHhhc----C-CCCCeeeHHHHHHHHH----hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc---CCChhHHHH
Q 043955 114 QLFDRM----G-EKEDVVLWNSIISAYS----ASGQCLEALGLFREMQRVGLVTNAYTFVAALQACED---SSFETLGME 181 (835)
Q Consensus 114 ~~f~~m----~-~~~~~~~~n~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~~~~~~a~~ 181 (835)
.+|+.. + .+.+...|...+.-+. .+|+.+.+..+|++.... ++. ....+-..+.. ..+...+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHHH
Confidence 666653 2 3245667777776543 235677788888888763 211 11222221111 111111111
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCCC----CCcccHHHHHHHHHcCC--C-----hhHHHHHHH
Q 043955 182 IHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLEN----KDSVSWNSMLTGFVQND--L-----YCKAMQFFR 250 (835)
Q Consensus 182 l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~d~~~~~~li~~~~~~g--~-----~~~A~~l~~ 250 (835)
+.... . +.+..|+.+++.+.. .+...|...+.--..++ - ...+..+|+
T Consensus 145 ~~~~~-------------------~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDT-------------------L--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHH-------------------H--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHH-------------------h--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 11111 0 112222222221111 12334555444322221 0 234556666
Q ss_pred HHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHhCCCccccccchhhhhhhccCChhHH-HHHHHhcC------
Q 043955 251 ELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQIGNTLMDMYAKCCCVNYM-GRVFYQMT------ 323 (835)
Q Consensus 251 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~~m~------ 323 (835)
++.... +-+...+...+.-+.+.|+.+.|+.+++..++. +.+...+. .|+.....++. .++.+...
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC------
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccch
Confidence 666532 222344555555556667777777777777776 22322222 22222111111 11111110
Q ss_pred ------CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc-cccCchHHHHHHHHHHHhCCCch
Q 043955 324 ------AQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACS-GLKCMSQTKEIHGYIIRKGLSDL 396 (835)
Q Consensus 324 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~~~~i~~~~~~~~~~~~ 396 (835)
......|-..+....+.+..+.|..+|.+. .. ..++...|......-. ..++.+.|+.+++..++..+.+.
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 001245777777777788899999999988 22 1123333332211111 12369999999999999876555
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNE 455 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~ 455 (835)
..+...++...+.|+.+.|+.+|+... +....|...+.-=...|+.+.+..+++++..
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567778899999999999999999984 4567788888777778999988888888874
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=9.2e-07 Score=77.90 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
.+.|..++..+.+.|++++|.+.+++. ...| ++.+|..+..++...|+.+.|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 455667778888888888888888776 4445 56688888888888899999999999999999999889999999999
Q ss_pred hcCCchHHHHHHHHHHc
Q 043955 677 ASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 677 ~~g~~~~a~~~~~~m~~ 693 (835)
..|++++|.+..+...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999888766554
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.43 E-value=1e-05 Score=83.31 Aligned_cols=160 Identities=9% Similarity=-0.053 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC----hhHH
Q 043955 532 TSMINANGLHGRGKVAIDLFYKMEAES-FAPDHI----TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW----PEHY 602 (835)
Q Consensus 532 ~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y 602 (835)
...+..+...|++++|++++++..+.. ..|+.. .+..+...+...|++++|..+|+.......-.++ ...|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334677888899999999999988732 223321 2334666677888999999999888753222222 3468
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-------CC-CCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC------CCc
Q 043955 603 ACLVDLLGRANHLEEAYQFVRSM-------QI-EPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN------PGN 667 (835)
Q Consensus 603 ~~lv~~l~r~g~~~eA~~~~~~m-------~~-~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~ 667 (835)
..++.+|.+.|++++|++.++++ |. .|. ..+|..+...+...|+.+.|...+++++++.|+. +..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999888776 11 122 2368888899999999999999999999887654 456
Q ss_pred hHHHHHHHHhcCC-chHHHHHHHHH
Q 043955 668 YVLISNVFAASRK-WKDVEQVRMRM 691 (835)
Q Consensus 668 ~~~l~~~y~~~g~-~~~a~~~~~~m 691 (835)
|..++.+|...|+ +++|.+..+..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 8899999999995 59998776544
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.42 E-value=1.3e-06 Score=76.15 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=74.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 641 (835)
++..+...+...|++++|..+|+.+... .| +...+..++.++.+.|++++|...++++ ...| +..+|..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3444444455555555555555544422 23 3455566666666677777777666665 2233 556777888888
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcC
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASR 679 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 679 (835)
...|+.+.|...++++++++|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88889999999999999999998888888888876654
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=1.2e-06 Score=77.26 Aligned_cols=115 Identities=14% Similarity=0.001 Sum_probs=84.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 641 (835)
.+..+...+...|++++|..+|+..... .| +...+..++.++...|++++|.+.+++. ...| +..+|..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4445555566666666666666655532 34 3566667777777777777777777665 3344 456788888888
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCch
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWK 682 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 682 (835)
...|+.+.|...++++++++|+++..+..++.+|...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 88899999999999999999999999999999998888763
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.40 E-value=3.2e-07 Score=83.62 Aligned_cols=110 Identities=12% Similarity=0.021 Sum_probs=77.2
Q ss_pred CCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 043955 559 FAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVW 634 (835)
Q Consensus 559 ~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 634 (835)
+.|+.. .+..+...+...|++++|...|+... .+.| +...|..++.++.+.|++++|++.+++. .+.| ++..|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC---VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 445442 44555566667777777777777665 3355 4666777777777778888887777766 3444 44577
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 635 CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 635 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
..+..++...|+.+.|+..++++++++|+++......
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 7787888888999999999999999999887664443
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=3.9e-06 Score=86.41 Aligned_cols=161 Identities=8% Similarity=-0.078 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHhhhcCC--CCCC--h
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-----ITFLALLYACSHSGLINEGKKFLEIMRCDYQ--LDPW--P 599 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--i~p~--~ 599 (835)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|..+|+....... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 45566777888899999999999888874322111 1233445566788899999999987763221 1222 4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC------
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-------QIEPT--AEVWCALLGACRVHSNKELGEIVAKKLLELDPGN------ 664 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------ 664 (835)
..|..++.+|...|++++|.+.++++ |..+. ..++..+...+...|+.+.|...+++++++.++.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57889999999999999999888775 22221 2478888889999999999999999999886531
Q ss_pred CCchHHHHHHHHhcCCchHH-HHHHH
Q 043955 665 PGNYVLISNVFAASRKWKDV-EQVRM 689 (835)
Q Consensus 665 ~~~~~~l~~~y~~~g~~~~a-~~~~~ 689 (835)
+..|..++++|...|++++| ....+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 45678899999999999999 66433
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.38 E-value=7.5e-07 Score=93.79 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=117.6
Q ss_pred cCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 043955 510 CGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFL 586 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~ 586 (835)
.+++++|...|+.... .+...|..+...|.+.|++++|+..|++.+. +.|+...+ . .+++..
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~---------~--~~~~~~-- 190 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF---------S--NEEAQK-- 190 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC---------C--SHHHHH--
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC---------C--hHHHHH--
Confidence 3556667666665442 2456788888888888888888888888887 34443110 0 011111
Q ss_pred HHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 587 EIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 587 ~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+.| ....|..+..+|.+.|++++|++.+++. .+.| ++..|..+..++...|+.+.|+..++++++++|+
T Consensus 191 --------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 191 --------AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred --------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 111 1466778888888889999998888877 4555 5668888889999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCCchHHH-HHHHHH
Q 043955 664 NPGNYVLISNVFAASRKWKDVE-QVRMRM 691 (835)
Q Consensus 664 ~~~~~~~l~~~y~~~g~~~~a~-~~~~~m 691 (835)
++.++..|+.+|...|++++|. +..+.|
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999984 344444
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.36 E-value=1.2e-05 Score=78.13 Aligned_cols=160 Identities=9% Similarity=-0.091 Sum_probs=127.2
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT-KDLILWTSMINANGLHG----RGKVAIDLFYKMEAESFAPDHITFLALL 570 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g----~~~~Al~l~~~m~~~g~~Pd~~t~~~ll 570 (835)
++.....|..+|...|++++|.+.|++..+ .++.++..|...|.. | +.++|++.|++..+.| +...+..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 566777888889899999999999987764 477888888888887 6 8999999999998754 455666677
Q ss_pred HHhcc----cCcHHHHHHHHHHhhhcCCCCCC---hhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043955 571 YACSH----SGLINEGKKFLEIMRCDYQLDPW---PEHYACLVDLLGR----ANHLEEAYQFVRSM-QIEPTAEVWCALL 638 (835)
Q Consensus 571 ~a~~~----~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~~~~~~~ll 638 (835)
..+.. .++.++|..+|+... ...|. +..+..|..+|.. .+++++|.+.+++. ...+++..+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776 889999999999876 44553 7888889999988 88999999999988 3334555666666
Q ss_pred HHHhh------cCchhHHHHHHHHHHhcCC
Q 043955 639 GACRV------HSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 639 ~a~~~------~~~~~~a~~~~~~~~~l~p 662 (835)
..+.. ..|.+.|...++++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66653 2389999999999998864
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.36 E-value=1e-06 Score=82.95 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=70.9
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCch--h
Q 043955 575 HSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGA-CRVHSNK--E 648 (835)
Q Consensus 575 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a-~~~~~~~--~ 648 (835)
..|++++|...|+.... ..| +...|..++.++...|++++|.+.++++ ...| ++.+|..+..+ +...|+. +
T Consensus 22 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHH---HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 44555555555555442 234 3555666666666666666666666655 2233 44456666666 5566776 7
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.|+..++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777665544
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=2.4e-06 Score=79.09 Aligned_cols=124 Identities=8% Similarity=-0.022 Sum_probs=82.4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+...+...|++++|..+|+.... +.| +...+..++.++.+.|++++|.+.+++. ...| +..+|..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33444445555555555555555442 234 3555666666666777777777666655 3334 4557777777888
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHH--HHHHhcCCchHHHHHHHHHH
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLIS--NVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~--~~y~~~g~~~~a~~~~~~m~ 692 (835)
..|+.+.|...++++++++|+++..+..+. ..+...|++++|.+......
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888888888887774444 44778888888888765543
No 136
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.32 E-value=1.2e-06 Score=90.98 Aligned_cols=197 Identities=9% Similarity=-0.057 Sum_probs=148.2
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 043955 474 SLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYK 553 (835)
Q Consensus 474 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~ 553 (835)
..|++++|.+++....+..-. . .+...|++++|...|.. ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888877764221 1 12114788888888765 36678899999999999999
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCC--CC--ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 554 MEAE----SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQL--DP--WPEHYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 554 m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i--~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
..+. |-.+. ..+|..+...+...|++++|..+|+....-+.- .| ....|..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8762 11111 246888888999999999999999876543211 22 25678899999999 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC------chHHHHHHHHhcCCchHHHHHHHH
Q 043955 625 M-QIE---PT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG------NYVLISNVFAASRKWKDVEQVRMR 690 (835)
Q Consensus 625 m-~~~---p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~ 690 (835)
. .+. .+ ..++..+...+...|+.+.|...+++++++.|++.. .+..++.+|...|++++|.+..+.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 221 11 347888888999999999999999999999887653 567778899999999999998775
Q ss_pred HH
Q 043955 691 MR 692 (835)
Q Consensus 691 m~ 692 (835)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.31 E-value=1.3e-06 Score=82.36 Aligned_cols=128 Identities=10% Similarity=0.057 Sum_probs=91.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH-HhhcCCH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL-LGRANHL 615 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~-l~r~g~~ 615 (835)
...|++++|+..|++.... .| +...+..+...+...|++++|..+|+...+ +.| +...+..++.+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ---LRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhcCCc
Confidence 3456777777777777663 44 345666777777788888888888877663 345 46677777777 6688887
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 616 --EEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 616 --~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
++|.+.++++ ...| +..+|..+...+...|+.+.|...++++++++|+++....++
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 8888888776 4445 456788888888999999999999999999999987655444
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=1.1e-05 Score=83.37 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=137.8
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-Chh
Q 043955 436 SYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCG-ALD 514 (835)
Q Consensus 436 ~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~ 514 (835)
...+.+..++|++++.+++. +.|+..|. ++.--..+...| .++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~--~nP~~yta----------------------------------Wn~R~~iL~~l~~~l~ 106 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVR--MNPAHYTV----------------------------------WQYRFSLLTSLNKSLE 106 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHH--HCTTCHHH----------------------------------HHHHHHHHHHTTCCHH
T ss_pred HHHhCCCCHHHHHHHHHHHH--hCchhHHH----------------------------------HHHHHHHHHHhhhhHH
Confidence 33445556678888888776 45655442 333333333445 477
Q ss_pred hHHHHhhhCC---CCChhHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHH--------
Q 043955 515 IANKVFNCVQ---TKDLILWTSMINANGLH-G-RGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLIN-------- 580 (835)
Q Consensus 515 ~A~~~f~~~~---~~~~~~~~~li~~~~~~-g-~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~-------- 580 (835)
++++.++.+. .++..+|+.-...+... + +.++++++++++++ ..| |...|..-.....+.|..+
T Consensus 107 eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 107 DELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHH
Confidence 7777777655 34666777777666665 6 77888888888876 344 3455555444444444444
Q ss_pred HHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCch---
Q 043955 581 EGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH-------LEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNK--- 647 (835)
Q Consensus 581 ~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~-------~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~--- 647 (835)
+++++++.+.+ ..| +...|+....++.+.|+ +++++++++++ ...| |...|.-+-+.+...|+.
T Consensus 185 eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 185 SELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc
Confidence 78888887773 456 56677777777777776 78888888776 4556 677888877776665543
Q ss_pred -----------------hHHHHHHHHHHhcC------CCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 648 -----------------ELGEIVAKKLLELD------PGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 648 -----------------~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..-...+..++... +..+-+...|+.+|...|+.++|.++.+.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11222222222222 34455668899999999999999999888864
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=9.5e-07 Score=77.26 Aligned_cols=95 Identities=16% Similarity=0.029 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...+..++..+.+.|++++|...+++. ...| ++..|..|..++...|+.+.|+..++++++++|+++..+..|+.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345666788888999999999999887 5556 56688888888899999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHc
Q 043955 677 ASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 677 ~~g~~~~a~~~~~~m~~ 693 (835)
..|++++|.+..+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999988776654
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=6.9e-07 Score=80.75 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=79.6
Q ss_pred CCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 043955 559 FAPDHI-TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVW 634 (835)
Q Consensus 559 ~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 634 (835)
+.|+.. .+..+...+...|++++|..+|+... .+.| +...|..++.++.+.|++++|.+.+++. ...| ++..|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC---MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH---HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 344442 34455556667777777777777665 3356 4666777777788888888888777776 3444 34567
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 043955 635 CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNV 674 (835)
Q Consensus 635 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 674 (835)
..+..++...|+.+.|...++++++++|+++........+
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 7777888888999999999999999999888776655444
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=1.6e-06 Score=95.99 Aligned_cols=115 Identities=7% Similarity=-0.027 Sum_probs=90.9
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchh
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~ 648 (835)
.+...|++++|.++|+...+ +.| +...|..++.+|.+.|++++|++.+++. .+.| ++.+|..+..++...|+.+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 45566777777777776653 356 3777888888888888888888888777 5556 4568888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHH--HHhcCCchHHHHHHH
Q 043955 649 LGEIVAKKLLELDPGNPGNYVLISNV--FAASRKWKDVEQVRM 689 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 689 (835)
.|+..++++++++|+++..+..++.+ |...|++++|.+..+
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999998 889999999998865
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.29 E-value=8.2e-06 Score=81.54 Aligned_cols=180 Identities=7% Similarity=-0.114 Sum_probs=140.3
Q ss_pred hcCChhhHHHHhhhCCC---CChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 043955 509 RCGALDIANKVFNCVQT---KDLILWTSM-------INANGLHGRGKVAIDLFYKMEAESFAPDHI-------------- 564 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~---~~~~~~~~l-------i~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~-------------- 564 (835)
..++...|.+.|.++.+ .....|+.+ ...+...++..+++..+.+-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999998763 456789988 5777777777777777766654 455432
Q ss_pred --------HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 043955 565 --------TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTA----E 632 (835)
Q Consensus 565 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~----~ 632 (835)
....+..++...|++++|.+.|+.+. ...|+......+..++.+.|++++|++.++...-.|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12235566788999999999999776 34574326667778999999999999999977434433 3
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcC--CC-CCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELD--PG-NPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++-.|..++...|+.+.|+..++++.+.. |. .+.....++.++.+.|+.++|..+.+.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67788889999999999999999998654 54 445778999999999999999999888876
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.28 E-value=3.6e-05 Score=79.12 Aligned_cols=192 Identities=10% Similarity=-0.051 Sum_probs=124.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 043955 429 SWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYA 508 (835)
Q Consensus 429 ~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 508 (835)
.+...+..+...|++++|++.+.+..... |....... ....+..+...|.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~----------------------------~~~~~~~~~~~~~ 126 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQ----------------------------FLQWQYYVAAYVL 126 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHH----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHH----------------------------HHHHHHHHHHHHh
Confidence 44556677888899999999888877632 21110000 0011233556677
Q ss_pred hcCChhhHHHHhhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHh
Q 043955 509 RCGALDIANKVFNCVQT-----KD----LILWTSMINANGLHGRGKVAIDLFYKMEAE-SFAPD-----HITFLALLYAC 573 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~Pd-----~~t~~~ll~a~ 573 (835)
..|++++|...|+...+ .+ ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+..+|
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 88888888888775431 11 347888999999999999999999988731 01222 14677888889
Q ss_pred cccCcHHHHHHHHHHhhhc---CCCCCC-hhHHHHHHHHHhhcCCHHHH-HHHHHhCCCCCCHHHHHHHHHHHhhcCchh
Q 043955 574 SHSGLINEGKKFLEIMRCD---YQLDPW-PEHYACLVDLLGRANHLEEA-YQFVRSMQIEPTAEVWCALLGACRVHSNKE 648 (835)
Q Consensus 574 ~~~g~~~~a~~~~~~m~~~---~~i~p~-~~~y~~lv~~l~r~g~~~eA-~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~ 648 (835)
...|++++|..+|+..... .+..+. ...|..++.++.+.|++++| ...+++. +..+...++..
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A------------l~~~~~~~~~~ 274 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA------------SFFFDILEMHA 274 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH------------HHHHHHTTCHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH------------HHHHHHhCcHh
Confidence 9999999999999876532 122221 56788888888899998888 6666653 22334556656
Q ss_pred HHHHHHHHHHhcCC
Q 043955 649 LGEIVAKKLLELDP 662 (835)
Q Consensus 649 ~a~~~~~~~~~l~p 662 (835)
.+......+-.++.
T Consensus 275 ~~~~~~~~~~~~~~ 288 (293)
T 2qfc_A 275 YKEALVNKISRLEH 288 (293)
T ss_dssp HHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHhh
Confidence 66555555555543
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.25 E-value=5.6e-05 Score=77.65 Aligned_cols=159 Identities=11% Similarity=-0.060 Sum_probs=120.5
Q ss_pred HHHHHHhcCChhhHHHHhhhCCCC---Ch-----h-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 043955 503 LVDMYARCGALDIANKVFNCVQTK---DL-----I-LWTSMINANGLHGRGKVAIDLFYKMEAESFA-PD----HITFLA 568 (835)
Q Consensus 503 li~~y~k~g~~~~A~~~f~~~~~~---~~-----~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-Pd----~~t~~~ 568 (835)
.+..+.+.|++++|...++...+. +. . .+..+...|...|++++|+..|++....... +| ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999876532 11 1 2334677777788999999999999984322 23 225888
Q ss_pred HHHHhcccCcHHHHHHHHHHhhhcC----CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 043955 569 LLYACSHSGLINEGKKFLEIMRCDY----QLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-------QIEPT-AEVWC 635 (835)
Q Consensus 569 ll~a~~~~g~~~~a~~~~~~m~~~~----~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~ 635 (835)
+..++...|++++|..+|+.+.+.+ +..|. ...|..++.+|.+.|++++|.+++++. ...+. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999877422 22232 457889999999999999999998876 12233 55788
Q ss_pred HHHHHHhhcCc-hhHHHHHHHHHHhcC
Q 043955 636 ALLGACRVHSN-KELGEIVAKKLLELD 661 (835)
Q Consensus 636 ~ll~a~~~~~~-~~~a~~~~~~~~~l~ 661 (835)
.+..++...|+ .+.|...+++++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88888888995 699999999988653
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=4.5e-06 Score=71.09 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=76.1
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC--CCCchHHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPG--NPGNYVLISN 673 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~ 673 (835)
+...+..++.++.+.|++++|.+.+++. ...| +..+|..+..++...|+.+.|...++++++++|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3566677778888888888888888776 3334 4567878888888888888888888888888888 8888888888
Q ss_pred HHHhc-CCchHHHHHHHHHHc
Q 043955 674 VFAAS-RKWKDVEQVRMRMRG 693 (835)
Q Consensus 674 ~y~~~-g~~~~a~~~~~~m~~ 693 (835)
+|... |++++|.+..+...+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 88888 888888888776654
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=4.6e-05 Score=78.42 Aligned_cols=146 Identities=12% Similarity=0.072 Sum_probs=77.8
Q ss_pred hhHHHHhhhCC---CCChhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCc-HHHHHHHH
Q 043955 514 DIANKVFNCVQ---TKDLILWTSMINANGLHGR--GKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGL-INEGKKFL 586 (835)
Q Consensus 514 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~-~~~a~~~~ 586 (835)
+++...++.+. .++..+|+.-...+...|+ +++++++++++.+. .| |...|..-...+.+.|. ++++++++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444433 3455566665555555553 56666666666662 33 33445444444455555 46666666
Q ss_pred HHhhhcCCCCC-ChhHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc-----
Q 043955 587 EIMRCDYQLDP-WPEHYACLVDLLGRA--------------NHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH----- 644 (835)
Q Consensus 587 ~~m~~~~~i~p-~~~~y~~lv~~l~r~--------------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~----- 644 (835)
+.+.. ..| +...|+....++.+. +.++++++++++. -..| |..+|+-+-+.....
T Consensus 169 ~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 66652 344 344444444444433 4466666666655 3344 455665554443333
Q ss_pred ------CchhHHHHHHHHHHhcCCCC
Q 043955 645 ------SNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 645 ------~~~~~a~~~~~~~~~l~p~~ 664 (835)
+-++.+...++++++++|++
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc
Confidence 23566666667777777766
No 147
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=7.5e-06 Score=90.49 Aligned_cols=128 Identities=10% Similarity=0.004 Sum_probs=80.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC
Q 043955 536 NANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRAN 613 (835)
Q Consensus 536 ~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g 613 (835)
..|.+.|++++|++.|++.++ ..|+ ..++..+..++...|++++|...|+... .+.| +...|..++.+|.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAI---ELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcC
Confidence 345566777777777777776 3554 4556666677777777777777777666 3456 3667777777777777
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHH--HhhcCchhHHHHHHH-----------HHHhcCCCCCCch
Q 043955 614 HLEEAYQFVRSM-QIEPT-AEVWCALLGA--CRVHSNKELGEIVAK-----------KLLELDPGNPGNY 668 (835)
Q Consensus 614 ~~~eA~~~~~~m-~~~p~-~~~~~~ll~a--~~~~~~~~~a~~~~~-----------~~~~l~p~~~~~~ 668 (835)
++++|++.++++ ...|+ ...|..+..+ +...|+.+.|+..++ ++++++|+..+.+
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 158 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPK 158 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccc
Confidence 777777777765 33332 2244444444 566677777777777 7777777765553
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=5e-06 Score=77.08 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=77.4
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGAC 641 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 641 (835)
.+..+...+...|++++|..+|+... .+.| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQAL---SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44555555666666666666666555 2345 4666777777777788888888777766 4455 466888888889
Q ss_pred hhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 642 RVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 642 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
...|+.+.|+..++++++++|+++..|...+-
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999887655543
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=1.2e-05 Score=69.17 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=47.1
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+...+...|++++|..+|+.... ..| +...+..++.++.+.|++++|.+.+++. ...| +..+|..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444444455555555555554442 223 2444444444444555555555444443 2222 2334444444444
Q ss_pred hcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 643 VHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
..|+.+.|...++++++++|+++..+..++
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445555555555555555544444443333
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.1e-05 Score=72.88 Aligned_cols=116 Identities=8% Similarity=-0.075 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLV 606 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 606 (835)
+...|..+...+...|++++|++.|++..+ ..|+... ....|..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence 455666666666666777777777766665 3454200 023334444
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 607 DLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
.++.+.|++++|++.+++. ...| +...|..+..++...|+.+.|...++++++++|+++..+..+..+..
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 4455555555555554443 2233 34566666667777777777777888888888877666666655543
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.18 E-value=1.5e-05 Score=76.48 Aligned_cols=152 Identities=10% Similarity=-0.042 Sum_probs=89.0
Q ss_pred hcCChhhHHH---HhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHH
Q 043955 509 RCGALDIANK---VFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAE----SFAPD-HITFLALLYACSHSGLIN 580 (835)
Q Consensus 509 k~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~ 580 (835)
..|++++|.+ .+..-+.....+|+.+...|...|++++|+..|++.... |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 554433345567777777788888888888888777651 12222 234556666777777777
Q ss_pred HHHHHHHHhhhc---CCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH----HHHHHHHHHHhhcCch
Q 043955 581 EGKKFLEIMRCD---YQLDP--WPEHYACLVDLLGRANHLEEAYQFVRSM----QIEPTA----EVWCALLGACRVHSNK 647 (835)
Q Consensus 581 ~a~~~~~~m~~~---~~i~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~----~~~~~ll~a~~~~~~~ 647 (835)
+|..+|+..... .+-.| ....+..++.++.+.|++++|.+.+++. +-.++. .++..+...+...|+.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777765533 22122 1344666677777777777777666554 111111 1234455556666666
Q ss_pred hHHHHHHHHHHhc
Q 043955 648 ELGEIVAKKLLEL 660 (835)
Q Consensus 648 ~~a~~~~~~~~~l 660 (835)
+.|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=6.1e-07 Score=86.43 Aligned_cols=166 Identities=9% Similarity=-0.051 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQTK---DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSH 575 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 575 (835)
+.+..+......|.++.|.+.|+..... ....|..+...+...|++++|+..|++... ..|+...+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~------ 77 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ------ 77 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH------
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh------
Confidence 3455666677778888888888754432 455788888888889999999999999887 33432111000
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIV 653 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~ 653 (835)
..++-. ..+ ....|..+..++.+.|++++|++.+++. ...| +..+|..+..++...|+.+.|...
T Consensus 78 --~~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 78 --ILLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp --HHHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --hHHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 000000 000 1355667778888888888888888776 4445 456788888888899999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 654 AKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 654 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
++++++++|+++..+..++.++...|+.+++.
T Consensus 145 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 145 LYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777766
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.17 E-value=1.1e-05 Score=69.35 Aligned_cols=92 Identities=17% Similarity=0.080 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLV 606 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv 606 (835)
..|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+++.... +.| +...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---LKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 34555555555666666666666665552 33 333444455555555666666666655542 234 345555555
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 043955 607 DLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 607 ~~l~r~g~~~eA~~~~~~m 625 (835)
.++.+.|++++|.+.+++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 5666666666666655554
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.17 E-value=4.7e-06 Score=73.21 Aligned_cols=107 Identities=10% Similarity=-0.098 Sum_probs=61.7
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACR 642 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~ 642 (835)
+..+...+...|++++|..+|+... .+.| +...|..++.++.+.|++++|++.+++. .+.| ++..|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMI---KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3334444445555555555555444 2234 3455555666666666666666666554 3344 3446666666777
Q ss_pred hcCchhHHHHHHHHHHhcC------CCCCCchHHHHHHH
Q 043955 643 VHSNKELGEIVAKKLLELD------PGNPGNYVLISNVF 675 (835)
Q Consensus 643 ~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 675 (835)
..|+.+.|...++++++++ |+++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 7777777777777777777 66655555554443
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=5.1e-06 Score=77.04 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
+...|..++..+.+.|++++|++.+++. ...| +..+|..+..++...|+.+.|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4677888999999999999999999987 5556 6678999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHc
Q 043955 676 AASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~ 693 (835)
...|++++|.+..+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 999999999999876654
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.15 E-value=4.5e-06 Score=73.62 Aligned_cols=93 Identities=11% Similarity=-0.003 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC-------chHH
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG-------NYVL 670 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-------~~~~ 670 (835)
..+..++..+.+.|++++|++.+++. .+.| ++.+|..+..++...|+.+.|+..++++++++|+++. .|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999988877 5566 4668989999999999999999999999999998876 4667
Q ss_pred HHHHHHhcCCchHHHHHHHHHH
Q 043955 671 ISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 671 l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
++++|...|++++|.+..+..-
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999876543
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=4.3e-06 Score=75.36 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCc
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM--------QIEPTAE-VW----CALLGACRVHSNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~~-~~----~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
.|..+..++.+.|++++|++.+++. ++.|+.. .| ..+..++...|+.+.|...++++++++|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666555544 3488655 88 899999999999999999999999999999888
Q ss_pred hHHHHH
Q 043955 668 YVLISN 673 (835)
Q Consensus 668 ~~~l~~ 673 (835)
+--+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 755543
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.13 E-value=2e-05 Score=75.66 Aligned_cols=153 Identities=9% Similarity=-0.032 Sum_probs=112.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhc---CCCCC-ChhHHHHHHHHHhhcCC
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCD---YQLDP-WPEHYACLVDLLGRANH 614 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~i~p-~~~~y~~lv~~l~r~g~ 614 (835)
...|++++|.+.++..... ......++..+...+...|++++|..+|+..... .+..| ....+..+..++...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966555431 1123456788888899999999999999877642 23344 36778899999999999
Q ss_pred HHHHHHHHHhC-CC---CC-C----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCC------chHHHHHHHHhcC
Q 043955 615 LEEAYQFVRSM-QI---EP-T----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPG------NYVLISNVFAASR 679 (835)
Q Consensus 615 ~~eA~~~~~~m-~~---~p-~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g 679 (835)
+++|.+.+++. .+ .| + ..++..+...+...|+.+.|+..+++++++.+.... .+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999988776 11 22 3 235777778888999999999999999977543222 2578999999999
Q ss_pred CchHHHHHHHHHH
Q 043955 680 KWKDVEQVRMRMR 692 (835)
Q Consensus 680 ~~~~a~~~~~~m~ 692 (835)
++++|.+..+...
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999988765443
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.13 E-value=8.7e-06 Score=75.26 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.+|..+..++...|+.+.|...++++++++|+++.+|..++.+|...|++++|....+...+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 46777778888889999999999999999999999999999999999999999888765554
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.12 E-value=1.2e-05 Score=71.56 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
+...|..++..+...|++++|.+.+++. ...| ++.+|..+...+...|+.+.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4667777888888888888888887766 3444 4567888888888888888888888888888888888888888888
Q ss_pred HhcCCchHHHHHHHHHHc
Q 043955 676 AASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~ 693 (835)
...|++++|.+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888888888887766554
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.11 E-value=3.2e-06 Score=81.27 Aligned_cols=144 Identities=11% Similarity=-0.006 Sum_probs=75.8
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCC---CCh----------------hH
Q 043955 470 SAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQT---KDL----------------IL 530 (835)
Q Consensus 470 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~----------------~~ 530 (835)
.....++.++.+++.+....... ......+..+...|.+.|++++|...|++... .+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 34445566666666655332211 11234566788889999999999999987652 232 55
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDL 608 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~ 608 (835)
|..+...|...|++++|+..|++.++ +.|+ ...+..+..++...|++++|..+|+... .+.| +...+..+..+
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAA---SLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH---HHCCCcHHHHHHHHHH
Confidence 66666666666666666666666665 2343 3344455555555555666655555544 2234 24444444444
Q ss_pred HhhcCCHHHHH
Q 043955 609 LGRANHLEEAY 619 (835)
Q Consensus 609 l~r~g~~~eA~ 619 (835)
+.+.|+.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 162
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.11 E-value=2e-05 Score=69.44 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
+...|..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|+..++++++++|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4678889999999999999999999987 5666 6678989999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHc
Q 043955 676 AASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 676 ~~~g~~~~a~~~~~~m~~ 693 (835)
...|++++|.+..+...+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999876654
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=3.2e-05 Score=69.67 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
+...+..++..+.+.|++++|.+.+++. ...|+ ..+|..+..++...|+.+.|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4677888889999999999999999887 66787 568888888899999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHc
Q 043955 673 NVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 673 ~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.+|...|++++|.+..+...+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999876654
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.07 E-value=3.3e-05 Score=71.21 Aligned_cols=128 Identities=9% Similarity=-0.048 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHH
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACL 605 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~l 605 (835)
...|..+...+...|++++|+..|++..+ ..| +..++..+..++...|++++|..+|+...+ +.| +...|..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~ 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 34677777778888888888888888877 344 455677777777888888888888887763 345 46778888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHhhcCchhHHHHHHHHHHhc
Q 043955 606 VDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCAL--LGACRVHSNKELGEIVAKKLLEL 660 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~l--l~a~~~~~~~~~a~~~~~~~~~l 660 (835)
+.++.+.|++++|.+.++++ ...| +...|..+ ...+...|+.+.|...+++..++
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888888776 3334 34444333 33355668888888777766543
No 165
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.07 E-value=3.6e-05 Score=66.70 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...|..++..+.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999887 3344 56789899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHc
Q 043955 677 ASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 677 ~~g~~~~a~~~~~~m~~ 693 (835)
..|++++|.+..+.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999877664
No 166
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=4.7e-05 Score=85.66 Aligned_cols=168 Identities=8% Similarity=-0.026 Sum_probs=139.7
Q ss_pred CChhhHHHHhhhCC---CCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccc
Q 043955 511 GALDIANKVFNCVQ---TKDLILWTSMINANGLHGR----------GKVAIDLFYKMEAESFAPDH-ITFLALLYACSHS 576 (835)
Q Consensus 511 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~----------~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~ 576 (835)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+ ..|+. .+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467788888776 3466789988888887777 8999999999998 56654 5788777888888
Q ss_pred C--cHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc------
Q 043955 577 G--LINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRAN-HLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH------ 644 (835)
Q Consensus 577 g--~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~------ 644 (835)
| +++++.++++.+. .++| +...|+.-..++.+.| .+++|+++++++ ...| |...|+....+....
T Consensus 121 ~~~~~~~el~~~~k~l---~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFL---EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHH---hhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 7899999999998 4567 5777888888889999 899999999998 6667 677998888776552
Q ss_pred --------CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchH
Q 043955 645 --------SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKD 683 (835)
Q Consensus 645 --------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 683 (835)
+.++.+...++++++++|+|..+|.-+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998665
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=1.4e-05 Score=83.93 Aligned_cols=118 Identities=11% Similarity=-0.017 Sum_probs=80.9
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCC--C-C---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQT--K-D---------------LILWTSMINANGLHGRGKVAIDLFYKMEAE 557 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~ 557 (835)
+...+..+...|.+.|++++|...|++... | + ...|..+...|.+.|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 456788899999999999999999987652 2 3 36777777777777777777777777776
Q ss_pred CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 043955 558 SFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 558 g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA 618 (835)
+.|+ ...+..+..++...|++++|...|+... .+.| +...+..+..++.+.|+.++|
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL---QLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3453 3455666666666667777766666655 3345 345555555566666655555
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=1e-05 Score=70.62 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=61.2
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVH 644 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~ 644 (835)
.+...+...|++++|...|+... .+.| +...|..++.++.+.|++++|++.+++. .+.| +...|..|..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVC---QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34445556666666666666655 3355 4666667777777777777777777666 4455 455777777778888
Q ss_pred CchhHHHHHHHHHHhcCCCCC
Q 043955 645 SNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~ 665 (835)
|+.+.|+..++++++++|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888754
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.04 E-value=0.00017 Score=74.28 Aligned_cols=157 Identities=10% Similarity=0.062 Sum_probs=96.3
Q ss_pred hhhHHHHhhhCC---CCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccc-----------
Q 043955 513 LDIANKVFNCVQ---TKDLILWTSMINANGLHGR-GKVAIDLFYKMEAESFAPD-HITFLALLYACSHS----------- 576 (835)
Q Consensus 513 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~----------- 576 (835)
++++...++.+. .+|-.+|+--.-.+...|. .+++++.++++++. .|+ ...|........+.
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 445555555443 3455566666666666665 46677777777663 343 33344333332222
Q ss_pred ---CcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 043955 577 ---GLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRA-----------NHLEEAYQFVRSM-QIEPTAEVWCALLGA 640 (835)
Q Consensus 577 ---g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~-----------g~~~eA~~~~~~m-~~~p~~~~~~~ll~a 640 (835)
+.+++++++++... .+.| +...|+-+--++.+. +.++++++.++++ .++||. .|.-+-.+
T Consensus 204 ~~~~~~~eEle~~~~ai---~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~ 279 (331)
T 3dss_A 204 LPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTII 279 (331)
T ss_dssp CCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHH
Confidence 45677777777665 3456 455555454555444 5688999999888 677875 46433222
Q ss_pred H-----hhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 641 C-----RVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 641 ~-----~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
. ...+..+.....+.++.++||-..+.|.-|.+-+
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 2 2356777888999999999999888887765543
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.03 E-value=1.1e-05 Score=71.90 Aligned_cols=98 Identities=8% Similarity=-0.091 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 043955 563 HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLG 639 (835)
Q Consensus 563 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 639 (835)
...+..+...+...|++++|..+|+.... +.| +...|..++.++.+.|++++|.+.+++. ...| ++.+|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34455555555555666666655555442 234 3555666666666667777766666655 3334 4556777777
Q ss_pred HHhhcCchhHHHHHHHHHHhcCCC
Q 043955 640 ACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
++...|+.+.|+..++++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777778888888888888888777
No 171
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.02 E-value=3.6e-05 Score=67.41 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHH
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYAC 604 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~ 604 (835)
+...|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+++.... +.| +...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC---IDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh---cCccCHHHHHH
Confidence 3456777777788888888888888888773 44 455677777777888888888888887764 345 4677788
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNK 647 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~ 647 (835)
++.++.+.|++++|.+.+++. ...| +...|..+..++...|+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888776 3444 455676666666655553
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=2.1e-05 Score=86.51 Aligned_cols=156 Identities=11% Similarity=0.049 Sum_probs=113.3
Q ss_pred hcCChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 043955 509 RCGALDIANKVFNCVQT---KDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKF 585 (835)
Q Consensus 509 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 585 (835)
..+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~- 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA- 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-
Confidence 34566667766655442 2455788888888899999999999998887 33432110 0 011110
Q ss_pred HHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC
Q 043955 586 LEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 586 ~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
. .| ....|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|+.+.|+..++++++++|
T Consensus 312 ~---------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 312 S---------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp H---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred H---------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 1 11 2466788888999999999999988887 4555 466888899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhcCCchHHHHH
Q 043955 663 GNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 663 ~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
+++.++..|+.+|...|+++++.+-
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=1.3e-05 Score=84.37 Aligned_cols=146 Identities=8% Similarity=-0.058 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
...|..+...+.+.|++++|+..|++.+. ..|+... +...|..+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34677788888889999999999999887 5676552 234445555443321 235677888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH-hcCCchHH
Q 043955 608 LLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA-ASRKWKDV 684 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~~~a 684 (835)
+|.+.|++++|++.+++. .+.| +...|..+..++...|+.+.|+..++++++++|+++..+..|+.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 4455 45678888888888888888888888888888888888888888744 45566666
Q ss_pred HHHHHHHHc
Q 043955 685 EQVRMRMRG 693 (835)
Q Consensus 685 ~~~~~~m~~ 693 (835)
.+..+.|-+
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666665543
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.96 E-value=1.6e-05 Score=81.17 Aligned_cols=83 Identities=10% Similarity=-0.087 Sum_probs=57.3
Q ss_pred ccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCCChHHHHHH
Q 043955 373 SGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNGLANEALEL 449 (835)
Q Consensus 373 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~Al~l 449 (835)
...|+++.|...+..+++..+.+..++..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 94 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN 94 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3334444444444444444444555777778888888888888888887664 3556777788888888888888888
Q ss_pred HHHHhh
Q 043955 450 FYLMNE 455 (835)
Q Consensus 450 f~~m~~ 455 (835)
|++...
T Consensus 95 ~~~al~ 100 (281)
T 2c2l_A 95 LQRAYS 100 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888776
No 175
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.96 E-value=0.00063 Score=70.27 Aligned_cols=222 Identities=14% Similarity=0.043 Sum_probs=128.9
Q ss_pred hcCChhhHHHHHHhcCC---CCchhHHHHHHHHHhCC-ChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHH
Q 043955 408 KCGNIDYSRNVFESIES---KDVVSWTSMISSYVHNG-LANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKE 483 (835)
Q Consensus 408 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 483 (835)
+.+..++|.++++.+.. .+...|+.--..+...| .++++++++..+.. ..|...+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~------------------- 124 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQ------------------- 124 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHH-------------------
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHH-------------------
Confidence 33444556666665543 23445665555555556 47777777777765 2343322
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhc-C-ChhhHHHHhhhCCC---CChhHHHHHHHHHHhcCChH--------HHHHH
Q 043955 484 LNGFIIRKGFNLEGSVASSLVDMYARC-G-ALDIANKVFNCVQT---KDLILWTSMINANGLHGRGK--------VAIDL 550 (835)
Q Consensus 484 i~~~~~~~g~~~~~~~~~~li~~y~k~-g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~Al~l 550 (835)
+++.-...+.+. + +++++++.++.+.+ +|..+|+--.-.+.+.|..+ ++++.
T Consensus 125 ---------------aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 125 ---------------VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp ---------------HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 222222222232 3 55666666666653 35566766655555555555 78888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhcccCc-------HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC-------
Q 043955 551 FYKMEAESFAP-DHITFLALLYACSHSGL-------INEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANH------- 614 (835)
Q Consensus 551 ~~~m~~~g~~P-d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~------- 614 (835)
++++.+. .| |...|........+.|. +++++++++.+. .+.| +...|.-+-.++.+.|+
T Consensus 190 ~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI---~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~ 264 (349)
T 3q7a_A 190 CNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI---HLIPHNVSAWNYLRGFLKHFSLPLVPILP 264 (349)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCCcccccc
Confidence 8888773 44 44556666666666654 677777777666 4466 45666666666666554
Q ss_pred -------------HHHHHHHHHhC-CC-------CCCHHHHHHHHHHHhhcCchhHHHHHHHHHH-hcCCCCCCchHH
Q 043955 615 -------------LEEAYQFVRSM-QI-------EPTAEVWCALLGACRVHSNKELGEIVAKKLL-ELDPGNPGNYVL 670 (835)
Q Consensus 615 -------------~~eA~~~~~~m-~~-------~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-~l~p~~~~~~~~ 670 (835)
+.+..++...+ +. .+.+..+..|...+...|+.+.|..+++.+. +.||-...++.-
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 34455555555 21 2456677788888888888888888888886 778865555443
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.95 E-value=3.1e-05 Score=65.73 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=62.4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 043955 566 FLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP---TAEVWCALLGA 640 (835)
Q Consensus 566 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~a 640 (835)
+..+...+...|++++|..+|+...+. .| +...|..++.++.+.|++++|.+.+++. ...| +..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 333444445555555555555544422 23 3455666667777777777777776665 3334 35677778888
Q ss_pred Hhhc-CchhHHHHHHHHHHhcCCCCC
Q 043955 641 CRVH-SNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 641 ~~~~-~~~~~a~~~~~~~~~l~p~~~ 665 (835)
+... |+.+.|...++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888764
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=2.1e-05 Score=83.59 Aligned_cols=137 Identities=12% Similarity=-0.027 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVD 607 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~ 607 (835)
..|..+...|.+.|++++|++.|++.++. .|+.. .....+... .+.| ....|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~-----------------~~~~~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR-----------------AAAEDADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH-----------------HHSCHHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc-----------------cccChHHHH---HHHHHHHHHHHHHHH
Confidence 45777788888888888888888887751 11110 000011111 2345 4678889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 608 LLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
+|.+.|++++|++.+++. ...| ++..|..+..++...|+.+.|+..++++++++|+++..+..|+.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 6677 46688888899999999999999999999999999999999999999988888776
Q ss_pred HH
Q 043955 686 QV 687 (835)
Q Consensus 686 ~~ 687 (835)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 178
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.93 E-value=2.4e-05 Score=68.83 Aligned_cols=91 Identities=13% Similarity=-0.015 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC--------hh
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW--------PE 600 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--------~~ 600 (835)
+|..+...|.+.|++++|++.|++.++ +.|+. ..|..+..++...|++++|+..|+...+ +.|+ ..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccchhhHHHHH
Confidence 455566666666666667666666666 45543 3455566666666666666666665542 2221 12
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.|..++.++...|++++|++.+++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555443
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.92 E-value=2e-05 Score=71.05 Aligned_cols=92 Identities=13% Similarity=-0.052 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHhhcCchhHHHHHHHHHHhc-------
Q 043955 602 YACLVDLLGRANHLEEAYQFVRSM-QIEPT-------------AEVWCALLGACRVHSNKELGEIVAKKLLEL------- 660 (835)
Q Consensus 602 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-------------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l------- 660 (835)
+...+..+...|++++|++.+++. .+.|+ +..|..+..++...|+.+.|...+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334555566666666666666655 22222 338999999999999999999999999999
Q ss_pred CCCCCCch----HHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 661 DPGNPGNY----VLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 661 ~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+|+++..| ..++.+|...|++++|.+..++.-+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999 9999999999999999998776543
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.90 E-value=3.8e-05 Score=67.45 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=51.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC---CCchHHHHHHHH
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEPTA----EVWCALLGACRVHSNKELGEIVAKKLLELDPGN---PGNYVLISNVFA 676 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~ 676 (835)
++..+.+.|++++|.+.+++. ...|+. .+|..+..++...|+.+.|...++++++.+|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445555566666666655554 112211 245555555666666666666666666666666 455666666666
Q ss_pred hcCCchHHHHHHHHHH
Q 043955 677 ASRKWKDVEQVRMRMR 692 (835)
Q Consensus 677 ~~g~~~~a~~~~~~m~ 692 (835)
..|++++|.+..+...
T Consensus 88 ~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666655444
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=1.9e-05 Score=69.23 Aligned_cols=113 Identities=10% Similarity=-0.075 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 529 ILWTSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 529 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
..|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+|+...... |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE--------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc---------
Confidence 34555555555666666666666665552 22 23334444444445555555555554443211 10
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 043955 608 LLGRANHLEEAYQFVRSMQIEPT----AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVF 675 (835)
Q Consensus 608 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 675 (835)
..++ ..+|..+..++...|+.+.|...+++++++.| ++.....+..++
T Consensus 71 -------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 71 -------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp -------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 0111 33455555556666666666666666666666 344444444433
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.87 E-value=1e-05 Score=70.06 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=49.7
Q ss_pred cCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHH
Q 043955 576 SGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEI 652 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~ 652 (835)
.|++++|..+|+...+...-.| +...|..++.+|.+.|++++|++.+++. ...| ++.+|..+..++...|+.+.|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555554442100023 2455555666666666666666666555 3334 34456666666666677777777
Q ss_pred HHHHHHhcCCCCCCc
Q 043955 653 VAKKLLELDPGNPGN 667 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~ 667 (835)
.+++++++.|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 777777777766544
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.86 E-value=7.3e-06 Score=70.97 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 611 RANHLEEAYQFVRSM-QI---EPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~---~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
..|++++|++.+++. .. .|+ ..+|..|..++...|+.+.|+..++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 568899999999887 55 364 4488889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 043955 686 QVRMRMRG 693 (835)
Q Consensus 686 ~~~~~m~~ 693 (835)
+..+...+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98765543
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=1.5e-05 Score=73.64 Aligned_cols=122 Identities=17% Similarity=0.009 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-Chh
Q 043955 528 LILWTSMINANGLHGRGKVAIDLFYKMEAES------FAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPE 600 (835)
Q Consensus 528 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~ 600 (835)
...|......+.+.|++++|+..|++.+..- -.|+...+ . .+.| ...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~------~~~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------V------ELDRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------H------HHHHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------H------HHHHHHHH
Confidence 3466777777777777777777777776520 01111000 0 0123 356
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC-CchHHHHHHH
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP-GNYVLISNVF 675 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y 675 (835)
.|..+..++.+.|++++|+..+++. .+.| ++..|..+..++...|+.+.|...++++++++|+++ .....|..+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 7788888888999999999888776 4556 456888888899999999999999999999999987 4455555443
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.84 E-value=7.2e-05 Score=65.44 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC-------CCchH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN-------PGNYV 669 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-------~~~~~ 669 (835)
...|..++..+.+.|++++|.+.+++. ...| ++.+|..+...+...|+.+.|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456677888888889999998888876 3334 56678888888889999999999999999999877 77889
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHc
Q 043955 670 LISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
.++.+|...|++++|.+..+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999877665
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00015 Score=79.12 Aligned_cols=186 Identities=6% Similarity=-0.101 Sum_probs=131.6
Q ss_pred HHHhcCChhhHHHHhhhCCCC-----C---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH
Q 043955 506 MYARCGALDIANKVFNCVQTK-----D---------------LILWTSMINANGLHGRGKVAIDLFYKMEAE-SFAPDHI 564 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~Pd~~ 564 (835)
.+.+.|++++|.+.|..+.+. + ..++..++..|...|++++|++.+.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345678888888877655421 1 124778899999999999999999887652 1122222
Q ss_pred ----HHHHHHHHhcccCcHHHHHHHHHHhhh---cCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC
Q 043955 565 ----TFLALLYACSHSGLINEGKKFLEIMRC---DYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-----Q--IEP 629 (835)
Q Consensus 565 ----t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~--~~p 629 (835)
+...+...+...|..+++..+++.... ..+..+ ....+..++.++...|++++|.+++++. . -+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 233334455677899999998876543 223333 3567888999999999999999998875 1 123
Q ss_pred C-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC-------CchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 630 T-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNP-------GNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 630 ~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~-------~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
. ..++..+...|...||.+.|...+++++...|..+ ..+..++.+|...|+|++|.+.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2 33677778889999999999999999987754322 34667788899999999998765433
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=2.3e-05 Score=66.68 Aligned_cols=89 Identities=9% Similarity=-0.116 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC------CCchH
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN------PGNYV 669 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~ 669 (835)
+.+.+..++..+.+.|++++|.+.+++. ...| ++.+|..+..++...|+.+.|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888899999999999988877 4455 56788888889999999999999999999999998 77788
Q ss_pred HHHHHHHhcCCchHHHH
Q 043955 670 LISNVFAASRKWKDVEQ 686 (835)
Q Consensus 670 ~l~~~y~~~g~~~~a~~ 686 (835)
.++.+|...|++++|.+
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 88888888887777644
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=3.1e-05 Score=81.35 Aligned_cols=112 Identities=6% Similarity=-0.107 Sum_probs=89.7
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVH 644 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 644 (835)
.+..+...+...|++++|...|+.... +.|+.. .+...|+.+++...+.. .+|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 455677788899999999999998763 345422 23445666666655432 3788888889999
Q ss_pred CchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 645 SNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+.+.|+..++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876543
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.77 E-value=0.00015 Score=63.44 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=57.3
Q ss_pred HhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcC
Q 043955 572 ACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT----AEVWCALLGACRVHS 645 (835)
Q Consensus 572 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~~ 645 (835)
.+...|++++|...|+...+...-.|. ...+..++.++.+.|++++|.+.+++. ...|+ +.++..+..++...|
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 344555555555555555432211111 135555666666666666666666555 22232 345666666677778
Q ss_pred chhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 646 NKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 646 ~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
+.+.|...++++++..|+++.....+
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 91 KNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88888888888888887765444333
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.73 E-value=0.00013 Score=66.59 Aligned_cols=95 Identities=13% Similarity=0.008 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHhcccCcHHHHHHHHHHhhhcC---CCCC-Chh
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFA-PDH----ITFLALLYACSHSGLINEGKKFLEIMRCDY---QLDP-WPE 600 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p-~~~ 600 (835)
+|..+...|...|++++|+..|++..+.... ++. .++..+...+...|++++|..+|+...... +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555555566666666666666665542100 111 234444455555566666665555443211 1001 123
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHh
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRS 624 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~ 624 (835)
.+..++.++...|++++|.+.+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344445555555555555554443
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=7.8e-05 Score=68.04 Aligned_cols=129 Identities=12% Similarity=-0.060 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----H
Q 043955 564 ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW----PEHYACLVDLLGRANHLEEAYQFVRSM----QIEPT----A 631 (835)
Q Consensus 564 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~ 631 (835)
.++..+...+...|++++|..+|+.......-.++ ...+..++.++...|++++|.+.+++. +-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667777888999999999999877643211121 357888999999999999999998876 11122 3
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC------CCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 632 EVWCALLGACRVHSNKELGEIVAKKLLELDPGN------PGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 632 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
.++..+...+...|+.+.|...+++++++.+.. +..+..++.+|...|++++|.+..+...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 467777788899999999999999999874432 3467899999999999999998876543
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=9.8e-05 Score=80.99 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=88.5
Q ss_pred hcccCcHHHHHHHHHHhhhc----CC-CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 043955 573 CSHSGLINEGKKFLEIMRCD----YQ-LDPW-PEHYACLVDLLGRANHLEEAYQFVRSM---------QIEPTAE-VWCA 636 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~----~~-i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ 636 (835)
+...|++++|..+++..... +| -.|+ ..+++.|+.+|...|++++|+.++++. |--|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777666554322 11 1232 456777778888888888887777664 3344443 6778
Q ss_pred HHHHHhhcCchhHHHHHHHHHHh-----cCCCCCCc---hHHHHHHHHhcCCchHHHHHHHHHHcCCCccCC
Q 043955 637 LLGACRVHSNKELGEIVAKKLLE-----LDPGNPGN---YVLISNVFAASRKWKDVEQVRMRMRGSGLKKTP 700 (835)
Q Consensus 637 ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~ 700 (835)
|...+..+|+.+.|+..++++++ +.|++|.+ +.+|...+...|++++|..+...++++..+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888875 46776544 457788899999999999999999886544433
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=0.00014 Score=59.05 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFA 676 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 676 (835)
...+..+...+.+.|++++|++.+++. ...| +..+|..+..++...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 566777888888889999999888776 3445 56688888888999999999999999999999999999999999887
Q ss_pred hcC
Q 043955 677 ASR 679 (835)
Q Consensus 677 ~~g 679 (835)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.60 E-value=2.5e-05 Score=70.25 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=34.1
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc-----------CchhHHHHHHHHHHhcCCCCCCc
Q 043955 616 EEAYQFVRSM-QIEPT-AEVWCALLGACRVH-----------SNKELGEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~-----------~~~~~a~~~~~~~~~l~p~~~~~ 667 (835)
++|+..+++. .+.|+ ..+|..|..++... |+++.|+..++++++++|+++.+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 3555555544 44443 33555555555544 58999999999999999987533
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.60 E-value=0.00019 Score=76.25 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..+|..+..++...|+.+.|+..++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 457888889999999999999999999999999999999999999999999999998876654
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.54 E-value=0.0003 Score=77.22 Aligned_cols=118 Identities=10% Similarity=-0.012 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhhhCCC---CC---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043955 497 GSVASSLVDMYARCGALDIANKVFNCVQT---KD---------------LILWTSMINANGLHGRGKVAIDLFYKMEAES 558 (835)
Q Consensus 497 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~---------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g 558 (835)
...+..+...|.+.|++++|...|++..+ .+ ...|+.+..+|.+.|++++|+..|++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-- 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 45677889999999999999999997652 23 35666777777777777777777777766
Q ss_pred CCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHH
Q 043955 559 FAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAY 619 (835)
Q Consensus 559 ~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~ 619 (835)
+.|+ ...+..+..++.+.|++++|+..|+... .+.| +...+..+..++.+.|+.++|.
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 3455556666666666666666666555 4455 3455555566666555555554
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=5.2e-05 Score=68.13 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=59.1
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCc----------hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 611 RANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSN----------KELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 611 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
|.+++++|.+.+++. ...| ++..|..+..+....++ ++.|+..++++++++|+++.+|..|+++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444555555555544 3333 33344444444444433 57999999999999999999999999999988
Q ss_pred C-----------CchHHHHHHHHHHc
Q 043955 679 R-----------KWKDVEQVRMRMRG 693 (835)
Q Consensus 679 g-----------~~~~a~~~~~~m~~ 693 (835)
| ++++|.+..++.-+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH
Confidence 5 89999998776655
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.44 E-value=0.00021 Score=61.23 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 618 AYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 618 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|++.+++. ...| ++..|..+...+...|+.+.|+..++++++++|+++..|..++.+|...|++++|....+...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444 3445 4557777777788888888888888888888888888888888888888888888887765543
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0011 Score=72.12 Aligned_cols=157 Identities=10% Similarity=-0.034 Sum_probs=118.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCCh
Q 043955 536 NANGLHGRGKVAIDLFYKMEAESFAPDH----------------ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWP 599 (835)
Q Consensus 536 ~~~~~~g~~~~Al~l~~~m~~~g~~Pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 599 (835)
..+...|++++|++.|.++.+..-.... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4466789999999999999884322111 236778889999999999999999877544333332
Q ss_pred ----hHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcC------
Q 043955 600 ----EHYACLVDLLGRANHLEEAYQFVRSM-------QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELD------ 661 (835)
Q Consensus 600 ----~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~------ 661 (835)
..++.+..++...|.+++|.++++.. ...+. ..++..|...+...|+.+.|...+++++..-
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 34555666777889999999888765 23333 4477888889999999999999999987652
Q ss_pred CCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 662 PGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 662 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
|.....|..++.+|...|+|++|....+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2234578899999999999999998876554
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.43 E-value=0.00031 Score=58.46 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 630 TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 630 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
++.+|..+..++...|+.+.|+..++++++++|+++.+|..|+.+|...|++++|.+..+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5668888888899999999999999999999999999999999999999999999988765543
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.37 E-value=0.00053 Score=56.00 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHhhcCc---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 629 PTAEVWCALLGACRVHSN---KELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 629 p~~~~~~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
+|+.+|..+..+....++ .+.|...++++++++|+++.+..+|++++...|+|++|...++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467788888887755544 7999999999999999999999999999999999999999999888754
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.36 E-value=0.00085 Score=75.38 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=110.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcccCc----------HHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 043955 542 GRGKVAIDLFYKMEAESFAPDHIT-FLALLYACSHSGL----------INEGKKFLEIMRCDYQLDP-WPEHYACLVDLL 609 (835)
Q Consensus 542 g~~~~Al~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l 609 (835)
...++|++.+++++. +.|+..| |+.--.++.+.|. ++++..+++.+.+ ..| +...|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 356789999999999 7888765 5555555555666 8999999999884 567 577788888889
Q ss_pred hhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-chhHHHHHHHHHHhcCCCCCCchHHHHHHHHhc
Q 043955 610 GRAN--HLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHS-NKELGEIVAKKLLELDPGNPGNYVLISNVFAAS 678 (835)
Q Consensus 610 ~r~g--~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 678 (835)
.+.| ++++|+++++++ ...| +..+|+.-..+....| ..+.+...++++++.+|.|..+|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999 789999999999 5566 6779999888888888 889999999999999999999999999998875
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00031 Score=59.38 Aligned_cols=94 Identities=10% Similarity=-0.020 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-------
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPD-HITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW------- 598 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~------- 598 (835)
+...|..+...+...|++++|++.|++.++ ..|+ ...+..+..++...|++++|...|+... .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHH
Confidence 345677777777788888888888888777 3453 4556667777777888888888777766 45564
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
...+..+..++...|+.++|.+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 344555555555555555555544444
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.09 E-value=0.00054 Score=58.60 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=50.5
Q ss_pred HHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 582 GKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEP-TAEVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 582 a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
+...|+... ...| +...+..++.++.+.|++++|++.+++. ...| +...|..|..++...|+.+.|+..+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444454444 3445 3556666666667777777777666665 3334 34467677777777777777777777777
Q ss_pred hcCCCC
Q 043955 659 ELDPGN 664 (835)
Q Consensus 659 ~l~p~~ 664 (835)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 777643
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.05 E-value=0.0026 Score=69.69 Aligned_cols=122 Identities=13% Similarity=-0.038 Sum_probs=75.9
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhhh----cCC-CCCC-hhHHHH
Q 043955 538 NGLHGRGKVAIDLFYKMEAE---SFAPDH----ITFLALLYACSHSGLINEGKKFLEIMRC----DYQ-LDPW-PEHYAC 604 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~---g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~-i~p~-~~~y~~ 604 (835)
+...|++++|+.++++.++. -+-|++ .+++.|..+|...|++++|..+++.... .+| -.|+ ...|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566677777666665542 122332 3566677777777777777777765542 223 2233 567888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---------CCCCCHHHHHHHHHH-HhhcCchhHHHHHHHHHHh
Q 043955 605 LVDLLGRANHLEEAYQFVRSM---------QIEPTAEVWCALLGA-CRVHSNKELGEIVAKKLLE 659 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~~~~~ll~a-~~~~~~~~~a~~~~~~~~~ 659 (835)
|+.+|...|++++|+.+++++ |--|+......++.. ....+..+.|+..++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 333444433344444 4466778888888877653
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.94 E-value=0.0073 Score=62.24 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhc----ccC----cHHHHHHHHHHh
Q 043955 524 QTKDLILWTSMINANGL--HG---RGKVAIDLFYKMEAESFAPDHI-TFLALLYACS----HSG----LINEGKKFLEIM 589 (835)
Q Consensus 524 ~~~~~~~~~~li~~~~~--~g---~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~----~~g----~~~~a~~~~~~m 589 (835)
...|..+|...+.|... .+ ...+|+.+|++.++ ..|+.. .+..+..++. ..+ ........+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34577888888776543 23 34789999999998 688853 3333333222 000 000111111111
Q ss_pred hhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCC
Q 043955 590 RCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGN 664 (835)
Q Consensus 590 ~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 664 (835)
. .....| ++..|..+.-.+.-.|++++|...++++ .+.|+...|..+.......|+.+.|...+++++.++|..
T Consensus 268 ~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 268 V-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp H-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred H-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1 111222 3444444444444445555555555554 233444444333344444455555555555555555543
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.87 E-value=0.00042 Score=72.49 Aligned_cols=431 Identities=11% Similarity=0.098 Sum_probs=251.3
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043955 125 VVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAM 204 (835)
Q Consensus 125 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~ 204 (835)
...|..|-.+....+...+|++-|-+. -|+..|..++.++.+.|.++.-...+....+..- ++.+-+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 456777888887777777776544221 2556677788888888887777777766665533 34445788888
Q ss_pred HHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHH
Q 043955 205 YARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELH 284 (835)
Q Consensus 205 y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 284 (835)
|++.+++.+-++++. .||+.--..+..-|...|.++.|.-+|.
T Consensus 126 yAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys---------------------------------- 168 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYN---------------------------------- 168 (624)
T ss_dssp HHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGG----------------------------------
T ss_pred HHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHH----------------------------------
Confidence 998888765544432 3566666666666666666666555543
Q ss_pred HHHHHhCCCccccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 043955 285 AYAIKQGFVSDLQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMI 364 (835)
Q Consensus 285 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 364 (835)
++.-|..|...+.+.|++..|...-+ ...++.+|..+-.+|...+.+.-|--.--.+. +.||.
T Consensus 169 ----------~isN~akLAstLV~L~~yq~AVdaAr--KAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade-- 231 (624)
T 3lvg_A 169 ----------NVSNFGRLASTLVHLGEYQAAVDGAR--KANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE-- 231 (624)
T ss_dssp ----------GSCCCTTTSSSSSSCSGGGSSTTTTT--TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--
T ss_pred ----------hCccHHHHHHHHHHHHHHHHHHHHHH--hcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--
Confidence 33345566666777777666654322 23478899999999999999887755544443 23332
Q ss_pred HHHHHHHhccccCchHHHHHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcC----CC-------CchhHHHH
Q 043955 365 IGSVLMACSGLKCMSQTKEIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIE----SK-------DVVSWTSM 433 (835)
Q Consensus 365 ~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~-------~~~~~~~l 433 (835)
+..++..|...|.+++-..+++..+...-....+++-|.-.|+|-. .++-.+-++..- -| ....|.-+
T Consensus 232 L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~El 310 (624)
T 3lvg_A 232 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 310 (624)
T ss_dssp CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHH
Confidence 3345667888899998888887776333334559999999999873 333333332221 12 45678888
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHH--------------hCCCCchhH
Q 043955 434 ISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIR--------------KGFNLEGSV 499 (835)
Q Consensus 434 i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--------------~g~~~~~~~ 499 (835)
+-.|.+..+++.|... |... .|+...-..+.....+.++++.--+....-++ ..+++
T Consensus 311 vfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh---- 381 (624)
T 3lvg_A 311 VFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDH---- 381 (624)
T ss_dssp HHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCS----
T ss_pred HHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCCh----
Confidence 8888888888877542 3321 12222222223333333333322222111111 11111
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQTKDLILWTS-MINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGL 578 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~-li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 578 (835)
+-.+.++.|.|++.-....+......|...-|- +-..|....+++ +...-+.+|-.-..
T Consensus 382 -~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~-------------------~LR~SId~ydNFD~ 441 (624)
T 3lvg_A 382 -TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ-------------------ALRTSIDAYDNFDN 441 (624)
T ss_dssp -TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH-------------------HHHHTTSSCCCSCT
T ss_pred -HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH-------------------HHHHHHHHhccccH
Confidence 134566777777777777777777766655543 333444444443 22222222333333
Q ss_pred HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 043955 579 INEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLL 658 (835)
Q Consensus 579 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 658 (835)
++-|.++ . + .+-.+.-..-..+|.|.+++++|.++.++=.+-.|+. ......|+.+.++...+-.+
T Consensus 442 i~LA~rL----E-k---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAi------etAa~S~~~elaeeLL~yFv 507 (624)
T 3lvg_A 442 ISLAQRL----E-K---HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAM------QYASESKDTELAEELLQWFL 507 (624)
T ss_dssp THHHHHH----H-T---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGG------TTTTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHH----h-h---CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHH------HHHHHcCCHHHHHHHHHHHH
Confidence 3333332 1 1 1223333444567888888888887766544333332 23445677777777776666
Q ss_pred hcC
Q 043955 659 ELD 661 (835)
Q Consensus 659 ~l~ 661 (835)
+..
T Consensus 508 ~~g 510 (624)
T 3lvg_A 508 QEE 510 (624)
T ss_dssp HHC
T ss_pred HcC
Confidence 543
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.86 E-value=0.00093 Score=72.08 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhc-----CCCCC---CchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeE
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLEL-----DPGNP---GNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSW 704 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l-----~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~ 704 (835)
+++.|..+|...|+.+.|+..+++++++ .|++| ..|..|+.+|..+|++++|..+.++..+-- ++.-
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~l---- 405 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM-RVTH---- 405 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT----
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHhc----
Confidence 4566666666666666666666666543 34443 346677888888888888887765543310 0111
Q ss_pred EEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHh
Q 043955 705 IEIGNKIHSFIARDKSHSESDEIYKKLAEITEKL 738 (835)
Q Consensus 705 i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 738 (835)
...||...+++..|++...+|
T Consensus 406 -------------G~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 406 -------------GREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp -------------CTTSHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCChHHHHHHHHHHHHHHHH
Confidence 147999999999999887777
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.75 E-value=0.0078 Score=53.31 Aligned_cols=112 Identities=13% Similarity=-0.078 Sum_probs=72.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHH
Q 043955 541 HGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGR----ANHLE 616 (835)
Q Consensus 541 ~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~g~~~ 616 (835)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -++..+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346778888888888876 44444 555666777778888888766533 245666667777766 66777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh----cCchhHHHHHHHHHHhcC
Q 043955 617 EAYQFVRSMQIEPTAEVWCALLGACRV----HSNKELGEIVAKKLLELD 661 (835)
Q Consensus 617 eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~l~ 661 (835)
+|.+.+++.--.-++..+..|...+.. .+|.+.|...++++.++.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777766222445555555555555 566677777666666653
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.72 E-value=0.0044 Score=63.89 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHhc--ccC---cHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHH----hhcC-------CHHHHHHHH
Q 043955 560 APDHITFLALLYACS--HSG---LINEGKKFLEIMRCDYQLDPW-PEHYACLVDLL----GRAN-------HLEEAYQFV 622 (835)
Q Consensus 560 ~Pd~~t~~~ll~a~~--~~g---~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l----~r~g-------~~~eA~~~~ 622 (835)
+.|...|...+.+.. +.+ ...+|+.+|++.. .++|+ ...|+.+.-++ ...+ .+.+|.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al---~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV---QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 444455666665543 233 3578999999887 56886 45555333322 1111 123344434
Q ss_pred HhCCCCC-CHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 623 RSMQIEP-TAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 623 ~~m~~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
..++..| ++.+|.++.-.....|+.+.|...++++++++|. ...|++++.+|.-.|++++|.+..+....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444 6778888877777789999999999999999974 67889999999999999999998765544
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.69 E-value=0.00075 Score=72.66 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhc-----CCCCC---CchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 634 WCALLGACRVHSNKELGEIVAKKLLEL-----DPGNP---GNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 634 ~~~ll~a~~~~~~~~~a~~~~~~~~~l-----~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
+++|..+|..+|+.+.|+..+++++++ .|++| ..|..|+.+|..+|++++|..+.++.
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444444444444444444444322 23332 23555666666666666666655443
No 212
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.68 E-value=0.0063 Score=48.79 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 631 AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 631 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
+..|..+...+...|+.+.|+..++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457888888899999999999999999999999999999999999999999999998776654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.66 E-value=0.004 Score=51.16 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=47.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCch
Q 043955 605 LVDLLGRANHLEEAYQFVRSM-QIEP-TAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNY 668 (835)
Q Consensus 605 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 668 (835)
.+..+.+.|++++|.+.+++. ...| +.. .|..+..++...|+.+.|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455666777888888777766 3344 455 677777777788888888888888888888877665
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.62 E-value=0.00019 Score=75.04 Aligned_cols=416 Identities=12% Similarity=0.100 Sum_probs=235.5
Q ss_pred ChHhHHHHHHhcCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHH
Q 043955 7 SVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLK 86 (835)
Q Consensus 7 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~ 86 (835)
+++.|.+.-++...| ..|..+..+....+...+|++.|-+ .-|+..|..++.++.+.|.++.-.+.+...++
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444443333333 4677888888888888888776622 23666788888888888888888877776665
Q ss_pred hCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC-----------
Q 043955 87 CGYDSTDFIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGLFREMQRVG----------- 155 (835)
Q Consensus 87 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g----------- 155 (835)
.. .++.+=+.|+-+|+|.+++.+-.+++. . ||+.--..+-.-|...|.++.|.-+|..+....
T Consensus 112 ~~--ke~~IDteLi~ayAk~~rL~elEefl~---~-~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 112 KA--RESYVETELIFALAKTNRLAELEEFIN---G-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TC--CSTTTTHHHHHHHHTSCSSSTTTSTTS---C-CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred Hh--cccccHHHHHHHHHhhCcHHHHHHHHc---C-CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 53 345566788889998888765443332 2 566556666666666666666665555442211
Q ss_pred ---------CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhcCC---C
Q 043955 156 ---------LVTNAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQVYVANALIAMYARCGKMTEAAGVLYQLE---N 223 (835)
Q Consensus 156 ---------~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~ 223 (835)
-.-+..||-.+-.+|...+.+..|...=-.++-..- -...|+..|-..|.+++-..+++.-. .
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 123567888888889988888877654333332211 12346677888888888888887654 2
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHHh------CC--Ccc
Q 043955 224 KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIKQ------GF--VSD 295 (835)
Q Consensus 224 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g~--~~~ 295 (835)
...-.++-|.-.|++- ++++.++.++..- +..-...+|++|.+..-|.+..-++..-.+. -+ +++
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~------sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~ 333 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 333 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSS------SSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHH------HhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChh
Confidence 4556677777777765 4555555544321 2222345778887777666665554432111 00 011
Q ss_pred ccccchhhhhhhccCChhHHHHHHHhcCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 043955 296 LQIGNTLMDMYAKCCCVNYMGRVFYQMTAQDFISWTTIIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGL 375 (835)
Q Consensus 296 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 375 (835)
..--..+-+...|.. |+..|-.-|.-|.+. .|. .++-+|.++...
T Consensus 334 Aw~h~~Fkdii~KVa---------------N~EiyYKAi~FYL~e------------------~P~--lL~DLL~vL~pr 378 (624)
T 3lvg_A 334 AWKEGQFKDIITKVA---------------NVELYYRAIQFYLEF------------------KPL--LLNDLLMVLSPR 378 (624)
T ss_dssp HCCGGGGTTTGGGCS---------------CSHHHHHHHHHHTTS------------------CCT--TSHHHHHHHCTT
T ss_pred hccHHHHHHHHHHcc---------------hHHHHHHHHHHHHHh------------------ChH--HHHHHHHhcccc
Confidence 111111112222222 333344344444321 111 123333333333
Q ss_pred cCchHHHHHHHHHH----------HhCCC-chhHHHHHHHHHHhcCChhhHHHHHHhcCC------------CCchhHHH
Q 043955 376 KCMSQTKEIHGYII----------RKGLS-DLVILNAIVDVYGKCGNIDYSRNVFESIES------------KDVVSWTS 432 (835)
Q Consensus 376 ~~~~~~~~i~~~~~----------~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~------------~~~~~~~~ 432 (835)
=|...+.+++...- ..... ...+-.++-+.|....+++.-+...+.-.. .+..-+.-
T Consensus 379 lDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRr 458 (624)
T 3lvg_A 379 LDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRR 458 (624)
T ss_dssp CCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHH
T ss_pred CChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHH
Confidence 23222222222110 00011 334788888889888887766554443322 23333332
Q ss_pred H-HHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhC
Q 043955 433 M-ISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKG 492 (835)
Q Consensus 433 l-i~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 492 (835)
+ ...|.+++++++++++.+ ...-|.-.+...+..++.+.+..++.+.+..|
T Consensus 459 IAA~LYkkn~rw~qsi~l~K---------kDklykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 459 IAAYLFKGNNRWKQSVELCK---------KDSLYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp HHHHHHHTTCHHHHHSSCSS---------TTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccHHHHHHHHH---------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2 234677888888886532 22334445566778888999999988888776
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.54 E-value=0.017 Score=51.15 Aligned_cols=112 Identities=7% Similarity=-0.041 Sum_probs=92.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCchhHHHH
Q 043955 577 GLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRV----HSNKELGEI 652 (835)
Q Consensus 577 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~~~~~~a~~ 652 (835)
++.++|.++|+...+. + .|.. . +..+|...+.+++|.+.+++.--..++..+..|...+.. .+|.+.|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999887644 3 3333 3 888898989999999999988434667778788777776 799999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHh----cCCchHHHHHHHHHHcCCC
Q 043955 653 VAKKLLELDPGNPGNYVLISNVFAA----SRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 696 (835)
.++++.+. .++.++..|+.+|.. .+++++|.+..++.-+.|-
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987 578889999999999 8999999999888777653
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.42 E-value=0.0065 Score=50.20 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhh
Q 043955 527 DLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-ITFLALLYACSHSGLINEGKKFLEIMR 590 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (835)
+...|..+...|...|++++|+..|++.++ ..|+. ..|..+..++...|++++|...|+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666666666666666666666665 34432 345555556666666666666665544
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.36 E-value=0.0075 Score=64.82 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=54.5
Q ss_pred cCcHHHHHHHHHHhhhcC--CCC---CC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHH
Q 043955 576 SGLINEGKKFLEIMRCDY--QLD---PW-PEHYACLVDLLGRANHLEEAYQFVRSM---------QIEPTAE-VWCALLG 639 (835)
Q Consensus 576 ~g~~~~a~~~~~~m~~~~--~i~---p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~ 639 (835)
.|++++|..+++...... -+. |+ ..+|+.++.+|...|++++|+.+++++ |--|+.. .++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 455566665555433211 111 22 455666667777777777777666554 3344443 5777777
Q ss_pred HHhhcCchhHHHHHHHHHHhc-----CCCCCCc
Q 043955 640 ACRVHSNKELGEIVAKKLLEL-----DPGNPGN 667 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l-----~p~~~~~ 667 (835)
.+..+|+.+.|+..+++++++ .|++|.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 777788888888877777653 5655433
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.29 E-value=0.003 Score=51.93 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=39.9
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC-Chh-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCchh
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP-WPE-HYACLVDLLGRANHLEEAYQFVRSM-QIEPTA-EVWCALLGACRVHSNKE 648 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p-~~~-~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~a~~~~~~~~ 648 (835)
+...|++++|...|+...+ ..| +.. .|..++.++.+.|++++|.+.+++. ...|+. .+|. .+.++
T Consensus 10 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~~~~~ 78 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--------RKMVM 78 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH--------HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH--------HHHHH
Confidence 3444555555555554442 234 234 5555555555556666665555554 223321 1221 13445
Q ss_pred HHHHHHHHHHhcCCCCC
Q 043955 649 LGEIVAKKLLELDPGNP 665 (835)
Q Consensus 649 ~a~~~~~~~~~l~p~~~ 665 (835)
.+...++++.+.+|+++
T Consensus 79 ~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 79 DILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHhccCcccc
Confidence 55555666666666554
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.16 E-value=0.082 Score=62.44 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=67.8
Q ss_pred HHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHH
Q 043955 403 VDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGK 482 (835)
Q Consensus 403 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 482 (835)
......+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...
T Consensus 659 f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 345568899999999987763 567899999999999999999999998864 223333333455555544
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhh
Q 043955 483 ELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFN 521 (835)
Q Consensus 483 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 521 (835)
.+-......|- ++.-...|.++|++++|.+++.
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444331 2334445666677777766643
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.14 E-value=0.018 Score=61.96 Aligned_cols=72 Identities=13% Similarity=-0.048 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHhhcCchhHHHHHHHHHHh-----cCCCC
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM---------QIEPTAE-VWCALLGACRVHSNKELGEIVAKKLLE-----LDPGN 664 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~ 664 (835)
.+++.++.+|...|++++|+++++++ |.-|+.. .++.|...+..+|+.+.|+..++++++ +.|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555554443 2233332 456666666666666666666666654 35666
Q ss_pred CCchHHH
Q 043955 665 PGNYVLI 671 (835)
Q Consensus 665 ~~~~~~l 671 (835)
|.+-.++
T Consensus 410 p~~~~~~ 416 (429)
T 3qwp_A 410 SLIEDLI 416 (429)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 5544433
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.09 E-value=0.053 Score=64.07 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=37.1
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
+.+..+|++++|.++.+.+. +...|..+...+.+.|+.+.|.+.|.++.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 34556788888888876653 557788888888888888888888887653
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.73 E-value=0.012 Score=57.97 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=52.6
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHhh-----cCchhHHHHHHHHHHhcCCCC-CCchHHHHHHHHhc-CCchHH
Q 043955 616 EEAYQFVRSM-QIEPT---AEVWCALLGACRV-----HSNKELGEIVAKKLLELDPGN-PGNYVLISNVFAAS-RKWKDV 684 (835)
Q Consensus 616 ~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~-----~~~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~a 684 (835)
.+|...+++. .+.|+ ...|..|...+.. -|+.+.|+..++++++++|+. ..+++.++..|+.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444443 34444 3345555555444 477777777777777787764 77777777777774 777777
Q ss_pred HHHHHHHHcCCCccCCc
Q 043955 685 EQVRMRMRGSGLKKTPG 701 (835)
Q Consensus 685 ~~~~~~m~~~~~~k~~g 701 (835)
.+..++......+..|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77766665544433344
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.32 E-value=0.071 Score=43.12 Aligned_cols=74 Identities=14% Similarity=0.013 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHH
Q 043955 598 WPEHYACLVDLLGRANH---LEEAYQFVRSM-QIEPT-AEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLIS 672 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 672 (835)
+++.+..+..++..++. .++|..++++. ...|+ +..+..|.......|+.+.|...++++++.+|+ +.....+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~ 83 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTII 83 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence 57778888887765444 68888888877 56674 446666667788889999999999999999988 44444443
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.27 E-value=0.5 Score=40.13 Aligned_cols=140 Identities=12% Similarity=0.091 Sum_probs=89.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEA 618 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA 618 (835)
.-.|..++..++..+.... .+..-++-++.--..+-+-+--.+.++++-+-|.+.| +|.+...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHH
Confidence 3457777888888777653 1222333333332333334445556666655555554 3444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 619 YQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 619 ~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
...+-.+. .++....--|.....+|.-|.-+.+...++.-+|-+|...+-+++.|.+.|.-.+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44443332 122223334566677888898889998877778888999999999999999999999999999999985
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.03 E-value=0.077 Score=43.97 Aligned_cols=73 Identities=18% Similarity=0.094 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-----C---C-CCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchH
Q 043955 599 PEHYACLVDLLGRANHLEEAYQFVRSM-----Q---I-EPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYV 669 (835)
Q Consensus 599 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~---~-~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 669 (835)
..-+-.|+..+.+.|+++.|...++.+ + . .+.+.++..|..++...|+.+.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666667766666666554 1 1 124558888889999999999999999999999999866543
Q ss_pred HH
Q 043955 670 LI 671 (835)
Q Consensus 670 ~l 671 (835)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.51 E-value=0.083 Score=52.14 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=73.4
Q ss_pred cCChhhHHHHhhhCCCCCh--hHHHHHHHH-HHhc--C------ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcc
Q 043955 510 CGALDIANKVFNCVQTKDL--ILWTSMINA-NGLH--G------RGKVAIDLFYKMEAESFAPD---HITFLALLYACSH 575 (835)
Q Consensus 510 ~g~~~~A~~~f~~~~~~~~--~~~~~li~~-~~~~--g------~~~~Al~l~~~m~~~g~~Pd---~~t~~~ll~a~~~ 575 (835)
.|+..+-.+.+....+.|+ ..|..++.+ ++.. | ...+|..++++.++ +.|+ ...+..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444444555544443 467776653 3332 3 24677778888887 6777 3556666666766
Q ss_pred -----cCcHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 043955 576 -----SGLINEGKKFLEIMRCDYQLDPW--PEHYACLVDLLGRA-NHLEEAYQFVRSM 625 (835)
Q Consensus 576 -----~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~-g~~~eA~~~~~~m 625 (835)
.|+.++|.++|++.. .+.|+ +.++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 488888888888776 56772 77788888888774 7888888877766
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.25 E-value=0.2 Score=44.27 Aligned_cols=89 Identities=10% Similarity=-0.025 Sum_probs=55.6
Q ss_pred CcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C-C-HHHHHHHHHHHhhcCchhH
Q 043955 577 GLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRAN---HLEEAYQFVRSM-QIE-P-T-AEVWCALLGACRVHSNKEL 649 (835)
Q Consensus 577 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~g---~~~eA~~~~~~m-~~~-p-~-~~~~~~ll~a~~~~~~~~~ 649 (835)
+.+..+.+.|.+.... + .++.++.-.+..+|.++. +++++..+++.. ... | + ...+-.|.-++...|+.+.
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3455566666554432 2 256677777777777777 555777777665 223 4 2 3345555566777788888
Q ss_pred HHHHHHHHHhcCCCCCCc
Q 043955 650 GEIVAKKLLELDPGNPGN 667 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~ 667 (835)
|.+.++++++.+|+|..+
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 888888888888865333
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.68 Score=42.01 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=81.8
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKK 584 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 584 (835)
+....+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+..+ |..++--+.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455789999998887766 4677899999999999999999999888653 2333333444566655444
Q ss_pred HHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 043955 585 FLEIMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKL 657 (835)
Q Consensus 585 ~~~~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 657 (835)
+-+..... .-++.-...+.-.|+++++.+++.+...-|.+.. ..+.+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 43322211 1233344445567888888888877654343321 234577777777776644
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.84 E-value=0.14 Score=45.26 Aligned_cols=87 Identities=20% Similarity=0.091 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHH
Q 043955 543 RGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG---LINEGKKFLEIMRCDYQLDP--WPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p--~~~~y~~lv~~l~r~g~~~e 617 (835)
....+.+-|.+....|. |+..+-..+..++.+++ ++++|..+|+...+.. .| +.+.+-.+.-.+.|.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHH
Confidence 34567777777777664 66666666777788888 7779999999887652 36 36666678888899999999
Q ss_pred HHHHHHhC-CCCCCHH
Q 043955 618 AYQFVRSM-QIEPTAE 632 (835)
Q Consensus 618 A~~~~~~m-~~~p~~~ 632 (835)
|.+.++.. .++|+..
T Consensus 90 A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCH
Confidence 99999988 6778543
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.4 Score=43.52 Aligned_cols=79 Identities=13% Similarity=0.219 Sum_probs=58.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHH
Q 043955 606 VDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVE 685 (835)
Q Consensus 606 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 685 (835)
.++-...|+++.|.++.+.+ .+...|..|...+-.+||++.|+++++++ +.+..|+-+|...|+-+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~--------~D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQ--------HSFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT--------TCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHh--------CCHHHHHHHHHHhCCHHHHH
Confidence 45566788888888888776 35678999988888889999888888865 34667777888888877766
Q ss_pred HHHHHHHcCC
Q 043955 686 QVRMRMRGSG 695 (835)
Q Consensus 686 ~~~~~m~~~~ 695 (835)
++-+....+|
T Consensus 81 kla~iA~~~g 90 (177)
T 3mkq_B 81 KMQNIAQTRE 90 (177)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCc
Confidence 6655444443
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.72 E-value=0.31 Score=55.52 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=48.5
Q ss_pred HHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHH
Q 043955 640 ACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRM 691 (835)
Q Consensus 640 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 691 (835)
-|...|+.+.|..+|+++...-|.+-.+|..|+.+|...|+|+.|.-....+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3778899999999999999999999999999999999999999999887765
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.46 E-value=0.88 Score=37.36 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=41.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhhhcCC----C-CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 043955 565 TFLALLYACSHSGLINEGKKFLEIMRCDYQ----L-DPWPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPT 630 (835)
Q Consensus 565 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----i-~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 630 (835)
-+..+...+...|+++.|...|+...+... . .+....|..++.++.+.|++++|..+++++ .+.|+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 344555666666666666666665543321 1 124567777888888888888888888776 45664
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.76 E-value=3.4 Score=36.04 Aligned_cols=100 Identities=9% Similarity=0.150 Sum_probs=61.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHH--HHH-hcccCcHHHHHHHHHHh
Q 043955 523 VQTKDLILWTSMINANGLHGRG------KVAIDLFYKMEAESFAPDHI----TFLAL--LYA-CSHSGLINEGKKFLEIM 589 (835)
Q Consensus 523 ~~~~~~~~~~~li~~~~~~g~~------~~Al~l~~~m~~~g~~Pd~~----t~~~l--l~a-~~~~g~~~~a~~~~~~m 589 (835)
|...|..+|=..+...-..|+. ++.+++|++.... ++|+.. .|.-+ =.| +...+++++|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456888999999998888998 8899999998875 777641 11111 111 12226777778887777
Q ss_pred hhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 590 RCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 590 ~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
... .-.- ...|-.....-.|+|+++.|.+++.+.
T Consensus 87 ~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 87 RAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 643 1111 444444444455666666666666554
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.34 E-value=3.3 Score=35.12 Aligned_cols=35 Identities=20% Similarity=0.061 Sum_probs=27.3
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHH
Q 043955 636 ALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVL 670 (835)
Q Consensus 636 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 670 (835)
.|.-++.+.|+++.|.+..+.+++.+|+|..+..+
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45557888899999999999999999987554433
No 235
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=87.16 E-value=18 Score=40.47 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=43.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--
Q 043955 433 MISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARC-- 510 (835)
Q Consensus 433 li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~-- 510 (835)
....+.-.|++|.|++.+.+. ...|.+.+...|.-+.-++. +..+...-. + .| ..-+..||..|.++
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~--~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK--P-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC--C-cc-cccHHHHHHHHHHHhh
Confidence 445666789999999987755 35666777666665544432 222221110 1 11 22246677778754
Q ss_pred -CChhhHHHHhhhCC
Q 043955 511 -GALDIANKVFNCVQ 524 (835)
Q Consensus 511 -g~~~~A~~~f~~~~ 524 (835)
++..+|.++|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 67777777776553
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.98 E-value=42 Score=37.32 Aligned_cols=275 Identities=8% Similarity=0.022 Sum_probs=145.5
Q ss_pred HHHHHHHHhC-CC-chhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcC
Q 043955 383 EIHGYIIRKG-LS-DLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVES 460 (835)
Q Consensus 383 ~i~~~~~~~~-~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p 460 (835)
++-..+.+.. .+ ...+.+.-+..+++.++.......+.. +..+...--....+....|+..+|....+++-..| +.
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~ 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC
Confidence 4444454442 22 223667777888888888888886665 33344333445667778899888888888887765 33
Q ss_pred ChhhhHhHHHHhhcccchhhHH--HHHHHHHHh-----------CCCCc-hhHHHHHHHHHHhcCChhhHHHHhhhCCCC
Q 043955 461 DSITLVSALSAASSLSILKKGK--ELNGFIIRK-----------GFNLE-GSVASSLVDMYARCGALDIANKVFNCVQTK 526 (835)
Q Consensus 461 ~~~t~~~ll~a~~~~~~~~~a~--~i~~~~~~~-----------g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~ 526 (835)
.+.....++......|.+.... +=...+... .+.++ .....+++..+.+-. .+....... .+
T Consensus 135 ~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~---~~~~~~~~~-~~ 210 (618)
T 1qsa_A 135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFARTT-GA 210 (618)
T ss_dssp CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHHHS-CC
T ss_pred CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChH---hHHHHHhcc-CC
Confidence 3445556666666544443221 111111111 11111 112233333332222 222222221 11
Q ss_pred ChhH---HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChh
Q 043955 527 DLIL---WTSMINANGLHGRGKVAIDLFYKMEAES-FAPDHI--TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE 600 (835)
Q Consensus 527 ~~~~---~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~ 600 (835)
+... ...-+.-+++ .+.+.|..+|......+ +.+... ....+.......+...++...+...... .++..
T Consensus 211 ~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 286 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTS 286 (618)
T ss_dssp CHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHH
T ss_pred ChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChH
Confidence 1111 1111222333 37889999999887543 322222 1223333445555455666677654422 23322
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHH-HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHH
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSMQIEP-TAEVWCA-LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLI 671 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 671 (835)
...-.+....|.|+++.|.+.|+.|+-.+ +..-|.- +..+....|+.+.|...++++.+ + ...|-.|
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 23334444457899999999999996554 2222221 22355667999999999999975 3 2456555
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.58 E-value=0.9 Score=39.60 Aligned_cols=98 Identities=8% Similarity=-0.050 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHhhcCCH------HHHHHHHHhC--CCCCCHH-HHHHHH------HHHhhcCchhHHHHHHHHHHhcCC
Q 043955 598 WPEHYACLVDLLGRANHL------EEAYQFVRSM--QIEPTAE-VWCALL------GACRVHSNKELGEIVAKKLLELDP 662 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~------~eA~~~~~~m--~~~p~~~-~~~~ll------~a~~~~~~~~~a~~~~~~~~~l~p 662 (835)
+.+.|-..++++.+.|+. ++-.+++++. .++|+.. .|...+ ..+..-+|++.|+.+++.++.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 355555555555555555 5555555544 2233211 222221 112233788889999998888765
Q ss_pred CCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 663 GNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 663 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
.-+..|+..+..-.++|+...|+++.......+
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 666778888888888999999988877666544
No 238
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=85.50 E-value=51 Score=36.86 Aligned_cols=239 Identities=11% Similarity=0.075 Sum_probs=113.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccCchHHHHHHHHHHHhCCC-chhHHHHHHHHHHhc--
Q 043955 333 IIAGYAQNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKCMSQTKEIHGYIIRKGLS-DLVILNAIVDVYGKC-- 409 (835)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~li~~y~k~-- 409 (835)
....+.-.|+++.|++.+.+. ...|.+.+...|..+.-.+- ...+.. .... ...-+..||..|.+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls----~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRL----TKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccc----cCCCcccccHHHHHHHHHHHhh
Confidence 445666789999999988755 35667777777766554442 111111 1111 112455677777653
Q ss_pred -CChhhHHHHHHhcCCCCc-----hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHH
Q 043955 410 -GNIDYSRNVFESIESKDV-----VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKE 483 (835)
Q Consensus 410 -g~~~~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 483 (835)
.+..+|...|--+..++. ..+..+-......+.++ .+|. .+.||......+|.-+..+=+++.-.+
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~---~LLG-----~i~~dG~r~~G~i~~~~~li~l~d~~~ 440 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFT---VLLG-----KIGRDGARIPGVIEERQPLLHVRDEKE 440 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHH---HHHC-----EECTTSCEECCHHHHTCGGGTCSCHHH
T ss_pred cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHH---HHcC-----CcCCCCCcCcchHHHhhcccccccHHH
Confidence 556666666555533330 11111111111122111 1111 122333222233333222111111111
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043955 484 LNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH 563 (835)
Q Consensus 484 i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~ 563 (835)
....+ ...........|++++|..+|+- .|+++.|+++..+.+.+
T Consensus 441 ~~~~i-----------~~~aA~~ae~~G~~~dAi~LY~L------------------a~~~d~vl~lln~~Ls~------ 485 (661)
T 2qx5_A 441 FLHTI-----------TEQAARRADEDGRIYDSILLYQL------------------AEEYDIVITLVNSLLSD------ 485 (661)
T ss_dssp HHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH------------------TTCHHHHHHHHHHHHHH------
T ss_pred HHHHH-----------HHHHHHHHHHCCCHHHHHHHHHH------------------hcCHHHHHHHHHHHHHH------
Confidence 11111 11223345577888888887654 56777777777776642
Q ss_pred HHHHHHHHHhc------------ccCcHHHHHHHHHHhhhc----CCCCC-ChhHHHHHHHH-----HhhcCCHHHHHHH
Q 043955 564 ITFLALLYACS------------HSGLINEGKKFLEIMRCD----YQLDP-WPEHYACLVDL-----LGRANHLEEAYQF 621 (835)
Q Consensus 564 ~t~~~ll~a~~------------~~g~~~~a~~~~~~m~~~----~~i~p-~~~~y~~lv~~-----l~r~g~~~eA~~~ 621 (835)
++..-. ..+.+..|.++.+..... -.+.+ +.+++..|.++ +.++|++++|++.
T Consensus 486 -----~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~ 560 (661)
T 2qx5_A 486 -----TLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQ 560 (661)
T ss_dssp -----HHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111111 123444555554443221 13333 35556655544 3689999999999
Q ss_pred HHhCCCCCC
Q 043955 622 VRSMQIEPT 630 (835)
Q Consensus 622 ~~~m~~~p~ 630 (835)
+++.++-|.
T Consensus 561 i~~L~llPl 569 (661)
T 2qx5_A 561 MELLDLLPF 569 (661)
T ss_dssp HHHTSCSCC
T ss_pred HHhCCCCCC
Confidence 999976663
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.44 E-value=5.9 Score=31.73 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCc
Q 043955 618 AYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLK 697 (835)
Q Consensus 618 A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 697 (835)
++.-+-.+.+-|++.+..+-|.|||.-+|+..|.+.++-+-..-.+....|-.+ ..+++-.+.+.|+.
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~------------lqElkPtl~ELGI~ 99 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV------------IQELRPTLNELGIS 99 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH------------HHHHHHHHHHHTCC
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH------------HHHHhhHHHHhCCC
Confidence 333334457889999999999999999999999999998765544444445433 34666777777773
No 240
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.35 E-value=44 Score=33.66 Aligned_cols=167 Identities=13% Similarity=0.028 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHhh
Q 043955 96 VNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGL----FREMQRVGLVTNAYTFVAALQACE 171 (835)
Q Consensus 96 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 171 (835)
+.++..-|.+.+++++|.+++-.- ...+.+.|+...|-++ ++-..+.++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445666788899999999876432 1234556666555444 355566788888888877777766
Q ss_pred cCCChh-----HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhH
Q 043955 172 DSSFET-----LGMEIHAATVKSG--QNLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQNDLYCK 244 (835)
Q Consensus 172 ~~~~~~-----~a~~l~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 244 (835)
....-+ ...+...+-.+.| ..-|+.....+-..|.+.+++.+|+.-|-.-..+.+..+..|+..+.+.+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 654321 2223333344445 345778888899999999999999998853222233566555555544443322
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHHH
Q 043955 245 AMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAIK 289 (835)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 289 (835)
+--++ -..+ --+...+++..|..++....+
T Consensus 186 ~dlfi--------------aRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 APLYC--------------ARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHH--------------HHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH--------------HHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 21111 1112 234446777777776655543
No 241
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.93 E-value=11 Score=29.93 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=46.6
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL 567 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~ 567 (835)
..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..+| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567899999999999999999999988765 46788888888777777765 55555554
No 242
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.28 E-value=11 Score=30.02 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=47.7
Q ss_pred HHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 043955 504 VDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEAESFAPDHITFL 567 (835)
Q Consensus 504 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~ 567 (835)
+..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344567899999999999999999999988765 47788888888887887765 55555554
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.89 E-value=52 Score=32.87 Aligned_cols=167 Identities=9% Similarity=0.073 Sum_probs=101.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHh
Q 043955 95 IVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSIISAYSASGQCLEALGL----FREMQRVGLVTNAYTFVAALQAC 170 (835)
Q Consensus 95 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~ 170 (835)
.+.++..-|.+.+++++|.+++-.- ...+.+.|+...|-++ .+...+.+++++..+...++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456667788889999998876542 1234556776665554 55555678888888887777766
Q ss_pred hcCC--Ch---hHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCChhHHHHHHhcCCCCCcccHHHHHHHHHcC---C
Q 043955 171 EDSS--FE---TLGMEIHAATVKSGQ--NLQVYVANALIAMYARCGKMTEAAGVLYQLENKDSVSWNSMLTGFVQN---D 240 (835)
Q Consensus 171 ~~~~--~~---~~a~~l~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~---g 240 (835)
.... .. +.......+-.+.|- ..|+.....+-..|.+.|++.+|+.-|-.-...|...+..|+.-+.+. |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533 11 222333333334432 347788899999999999999999988643323455666666555544 5
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHhHHHHHHHHH
Q 043955 241 LYCKAMQFFRELQGAGQKPDQVCTVNAVSASGRLGNLLNGKELHAYAI 288 (835)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 288 (835)
...++--..-+ .+| -+.-.+++..|..++....
T Consensus 183 ~~~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFFSR--------------LVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHH
Confidence 44443222111 122 2334677777777777554
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.80 E-value=52 Score=32.85 Aligned_cols=170 Identities=10% Similarity=0.051 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHH----HHHHhhcCCcCChhhhHhHHHHh
Q 043955 397 VILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALEL----FYLMNEANVESDSITLVSALSAA 472 (835)
Q Consensus 397 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l----f~~m~~~g~~p~~~t~~~ll~a~ 472 (835)
..+.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++..+...++.-+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 37778888899999999999886322 2345566776665554 33344457777777666666655
Q ss_pred hcccch-----hhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhc---C
Q 043955 473 SSLSIL-----KKGKELNGFIIRKGF--NLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLH---G 542 (835)
Q Consensus 473 ~~~~~~-----~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g 542 (835)
.....- +-......+..+.|- .-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 443211 222223333333332 247888999999999999999999988633323455555555544443 4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhc
Q 043955 543 RGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCD 592 (835)
Q Consensus 543 ~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 592 (835)
...++-- ..-.++|. +.-.|++..|...|+...+.
T Consensus 183 ~~~e~dl--------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHH--------------HHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 3333211 11112222 33567888898888876543
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.67 E-value=58 Score=32.78 Aligned_cols=168 Identities=13% Similarity=0.070 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHH----HHHhhcCCcCChhhhHhHHHHhh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELF----YLMNEANVESDSITLVSALSAAS 473 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf----~~m~~~g~~p~~~t~~~ll~a~~ 473 (835)
.+.++..=|.+.+++++|.+++-.- ...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 6677788899999999999876322 23455667766655544 44455677888877766666665
Q ss_pred cccchh-----hHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHH
Q 043955 474 SLSILK-----KGKELNGFIIRKG--FNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKV 546 (835)
Q Consensus 474 ~~~~~~-----~a~~i~~~~~~~g--~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 546 (835)
....-+ .......+-.+.| -.-|+.....+...|.+.|++.+|+.-|---..+.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 544321 1222233333444 334788889999999999999999998843222233566555544433332111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhh
Q 043955 547 AIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRC 591 (835)
Q Consensus 547 Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 591 (835)
+|...-.++|. |.-.|++..|...|+...+
T Consensus 186 --------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 12222223333 3446788888887766553
No 246
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=78.67 E-value=8.2 Score=32.64 Aligned_cols=65 Identities=5% Similarity=-0.077 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHhhcCc---hhHHHHHHHHHHhcC-C-CCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 629 PTAEVWCALLGACRVHSN---KELGEIVAKKLLELD-P-GNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 629 p~~~~~~~ll~a~~~~~~---~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+..+--.+.++....++ ...|+.+.+.++.-+ | ..-.....|+-.|.+.|++++|.+..+.+-+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455544455555544443 455888888888877 5 4556678899999999999999999877765
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.62 E-value=17 Score=29.04 Aligned_cols=65 Identities=9% Similarity=0.110 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITL 465 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~ 465 (835)
+.-.-+..+...|++++|..+.+....||+++|-++-.. +.|..+++..-+.++-.+| .|....|
T Consensus 42 v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 42 VQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 333334556788999999999999999999999887554 6677777777776776665 3444443
No 248
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=78.31 E-value=31 Score=29.46 Aligned_cols=84 Identities=17% Similarity=0.039 Sum_probs=52.8
Q ss_pred hcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccchhhHHHHHHH
Q 043955 408 KCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSILKKGKELNGF 487 (835)
Q Consensus 408 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 487 (835)
+||++.....-+-.+. .+....+.-++...+.|.-++--+++.++.. +.+|++.....+-.|+.+.|+...+.++...
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444333332 2333445566777777887777777777544 3466777777777888888888888777777
Q ss_pred HHHhCC
Q 043955 488 IIRKGF 493 (835)
Q Consensus 488 ~~~~g~ 493 (835)
+-+.|+
T Consensus 151 AC~kG~ 156 (172)
T 1wy6_A 151 ACKKGE 156 (172)
T ss_dssp HHHTTC
T ss_pred HHHhhh
Confidence 776664
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.98 E-value=6.8 Score=33.20 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCC
Q 043955 617 EAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGL 696 (835)
Q Consensus 617 eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 696 (835)
.++.-+-.+.+-|++.+..+-|.|||.-+|+..|.+.+|-+-..-.+....|-.+ ..+++-.+.+.|+
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~------------lqElkPtl~ELGI 141 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV------------IQELRPTLNELGI 141 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH------------HHHHHHHHHHHTC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH------------HHHHhhHHHHhCC
Confidence 3444444557889999999999999999999999999998765543334445433 3466777777777
Q ss_pred c
Q 043955 697 K 697 (835)
Q Consensus 697 ~ 697 (835)
.
T Consensus 142 ~ 142 (152)
T 2y69_E 142 S 142 (152)
T ss_dssp C
T ss_pred C
Confidence 3
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.81 E-value=44 Score=38.08 Aligned_cols=52 Identities=15% Similarity=0.003 Sum_probs=39.5
Q ss_pred hcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 043955 573 CSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSMQI 627 (835)
Q Consensus 573 ~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~ 627 (835)
|...|+++-|+++-+... .+.| +-.+|..|+.+|...|+++.|+-.++.+|+
T Consensus 347 Ll~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 347 LLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 456778888888777666 5567 477888888888888888888888888875
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.76 E-value=9.5 Score=39.94 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhh----hcCCCCCChhHH
Q 043955 532 TSMINANGLHGRGKVAIDLFYKMEAESFAP-DHITFLALLYACSHSGLINEGKKFLEIMR----CDYQLDPWPEHY 602 (835)
Q Consensus 532 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~i~p~~~~y 602 (835)
..++..+...|++++|+..+.++.. ..| ++..+..++.++...|+..+|++.|+... +++|++|..+.-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4455666677777777777777766 344 55677777778888888888887777654 356888876543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.39 E-value=46 Score=35.36 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHhhhcC-CCC--CC--hh
Q 043955 531 WTSMINANGLHGRGKVAIDLFYKMEAESFAPDH-----ITFLALLYACSHSGLINEGKKFLEIMRCDY-QLD--PW--PE 600 (835)
Q Consensus 531 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~i~--p~--~~ 600 (835)
...|...|-..|++.+|..++.++..+-...+. ..+...+..|...+++..|..+++.+.... ... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 455777888899999999999998754222222 235566678899999999999998765321 222 22 46
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 601 HYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 601 ~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
.|.|++.++...+++.+|...+...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7899999999999999998877655
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.15 E-value=16 Score=29.13 Aligned_cols=65 Identities=8% Similarity=0.038 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITL 465 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~ 465 (835)
+.-.-+..+...|++++|..+.+....||+++|-++-.. +.|..+++..-+.++-.+| .|....|
T Consensus 41 v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 41 ARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 333334556788999999999999999999999877553 6788787777777777665 4444444
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.89 E-value=11 Score=36.50 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=25.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhh
Q 043955 538 NGLHGRGKVAIDLFYKMEAESFAPDHI-TFLALLYACSHSGLINEGKKFLEIMR 590 (835)
Q Consensus 538 ~~~~g~~~~Al~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 590 (835)
..+.|..++|++....-++. .|... .-..+..-++-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455566666655555552 34332 22334444555566666665555444
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.76 E-value=8.6 Score=34.22 Aligned_cols=32 Identities=9% Similarity=-0.043 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 043955 598 WPEHYACLVDLLGRANHLEEAYQFVRSMQIEP 629 (835)
Q Consensus 598 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 629 (835)
+.+.---+..+|...|+.++|+..++..|.+-
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 34554457777888888888888888887654
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.72 E-value=41 Score=29.00 Aligned_cols=70 Identities=9% Similarity=0.023 Sum_probs=44.4
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC-CHH-HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 596 DPWPEHYACLVDLLGRANHLE---EAYQFVRSM-QIEP-TAE-VWCALLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 596 ~p~~~~y~~lv~~l~r~g~~~---eA~~~~~~m-~~~p-~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
.|+..+--.+..+|.++...+ +++.+++.. ...| +.. ..--|.-++.+.|+.+.|.+..+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 466666666777777776544 455566555 2233 222 223344567778888888888888888888753
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=73.23 E-value=11 Score=32.15 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCC
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLELDPGNP 665 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 665 (835)
.+--|.-++.+.|+.+.|.+..+.+++.+|+|.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344455667788888888888888888888763
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.59 E-value=1.3e+02 Score=36.51 Aligned_cols=144 Identities=12% Similarity=0.004 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~ 477 (835)
....++..+.+.+..+.++++..-.+ .+..+--.+...|...|++++|.+.|++.-. |+.++......+.
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~-------- 883 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLR-------- 883 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHH--------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhc--------
Confidence 44556677778888888877655444 3443333455678889999999999987642 3333322111000
Q ss_pred hhhHHHHHHHHHH-hCCC-CchhHHHHHHHHHHhcCChhhHHHHhh----hCCCCCh----hHHHHHHHHHHhcCChHHH
Q 043955 478 LKKGKELNGFIIR-KGFN-LEGSVASSLVDMYARCGALDIANKVFN----CVQTKDL----ILWTSMINANGLHGRGKVA 547 (835)
Q Consensus 478 ~~~a~~i~~~~~~-~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~----~~~~~~~----~~~~~li~~~~~~g~~~~A 547 (835)
.. ..+.. .... .-..-|.-++..+.+.|.++.+.+.-. .....+. ..|..+..++...|++++|
T Consensus 884 -----~~-~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 884 -----EF-QEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp -----HH-HHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred -----cc-ccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 00 00111 0011 111223445555556666555543332 1211111 1466666666666666666
Q ss_pred HHHHHHHHHC
Q 043955 548 IDLFYKMEAE 557 (835)
Q Consensus 548 l~l~~~m~~~ 557 (835)
...+-.+...
T Consensus 958 y~aL~~~pd~ 967 (1139)
T 4fhn_B 958 HVALMVLSTT 967 (1139)
T ss_dssp GHHHHHHHHS
T ss_pred HHHHHhCCCH
Confidence 6666555553
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.27 E-value=36 Score=29.36 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHH-C-CCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHH
Q 043955 545 KVAIDLFYKMEA-E-SFAPDHITFLALLYACSHSG---LINEGKKFLEIMRCDYQLDP--WPEHYACLVDLLGRANHLEE 617 (835)
Q Consensus 545 ~~Al~l~~~m~~-~-g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p--~~~~y~~lv~~l~r~g~~~e 617 (835)
.+-++.|++--. + +-.|+..|--.+..++.++. ++.+|+.+++...+. .| ..+..-.+.-.+.|.|++++
T Consensus 19 ~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~ 95 (144)
T 1y8m_A 19 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSM 95 (144)
T ss_dssp HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHH
Confidence 344555555432 3 33566655444555666655 456789999888754 35 34555567778899999999
Q ss_pred HHHHHHhC-CCCCCHH
Q 043955 618 AYQFVRSM-QIEPTAE 632 (835)
Q Consensus 618 A~~~~~~m-~~~p~~~ 632 (835)
|.++++.+ .++|+..
T Consensus 96 Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 96 AKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHhcCCCcH
Confidence 99999988 7788643
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.16 E-value=64 Score=29.68 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=21.8
Q ss_pred CchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCC
Q 043955 495 LEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGR 543 (835)
Q Consensus 495 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 543 (835)
++..+-...+...++.|..+....+...+..+|...-...+.+++..|.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 3444444445555555544333333333334444444444444444443
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.99 E-value=61 Score=33.66 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=55.9
Q ss_pred HHHHHHHhcCChhhHHHHhhhCCC--------CChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHH-----
Q 043955 502 SLVDMYARCGALDIANKVFNCVQT--------KDLILWTSMINANGLHG-RGKVAIDLFYKMEAESFAPDHITFL----- 567 (835)
Q Consensus 502 ~li~~y~k~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g-~~~~Al~l~~~m~~~g~~Pd~~t~~----- 567 (835)
.|...|.+.|+.++...++..... +..-....+|..+.... ..+.-+++..+..+.. +-+.-+|.
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l~ 102 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 455556666666665555554432 12223444555554432 2233333333333210 01112231
Q ss_pred -HHHHHhcccCcHHHHHHHHHHhhhcCCC-C-C--ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 043955 568 -ALLYACSHSGLINEGKKFLEIMRCDYQL-D-P--WPEHYACLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 568 -~ll~a~~~~g~~~~a~~~~~~m~~~~~i-~-p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m 625 (835)
-+..-+...|++.+|.+++..+.+...- + + -.+.|..-+.+|...|++.++...+.+.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444455566666665555555443211 1 1 1455555556666666666655555443
No 262
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.60 E-value=82 Score=30.28 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=25.5
Q ss_pred cCChHhHHHHHHHHHHhCCCcccc--ccchhhhhhhccCChhHHHHHHH
Q 043955 274 LGNLLNGKELHAYAIKQGFVSDLQ--IGNTLMDMYAKCCCVNYMGRVFY 320 (835)
Q Consensus 274 ~~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~ 320 (835)
.+......++.+.+++.|..++.. ...+.+...++.|..+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344444456666666666655432 22344455555666666666665
No 263
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=69.41 E-value=1.5 Score=27.91 Aligned_cols=13 Identities=46% Similarity=1.244 Sum_probs=10.0
Q ss_pred ccc-cCcccCCCCC
Q 043955 822 HHF-EAGVCSCGDY 834 (835)
Q Consensus 822 h~f-~~g~csc~d~ 834 (835)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 5899999977
No 264
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=68.11 E-value=33 Score=34.12 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=61.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc---CCH
Q 043955 539 GLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLGRA---NHL 615 (835)
Q Consensus 539 ~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~---g~~ 615 (835)
...|++++|+..|+..+.. ..+.........+++.++....+ +| ..+.-+.+-.|. ...
T Consensus 125 ~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~~~e~~e~~eli~icr-EY-------ilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIYR----------ITLLMVDDAEDEKLAHKILETAR-EY-------ILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHTTCHHHHHHHHHHHHHH----------HHTCCBCSSHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHTCCTTCH
T ss_pred HhcCCHHHHHHHHHHHHHH----------hheeeeccHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHhcCcccH
Confidence 4568888888888877642 11111122233444444443222 11 111112222222 244
Q ss_pred HHHHHHHHhC---CCCCCH--HHHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 616 EEAYQFVRSM---QIEPTA--EVWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 616 ~eA~~~~~~m---~~~p~~--~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
....++---+ +++|.- .++++-++.+.+++|+..|...+++++++.|.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4555554333 677743 36777778899999999999999999999995
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=67.69 E-value=25 Score=28.22 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 544 GKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 544 ~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
.-+..+-++.+....+-|+.....+.|.||.+..++.-|.++|+..+.+-|- ..+.|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 3345555666667778999999999999999999999999999988865433 3456766654
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.94 E-value=31 Score=33.39 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=77.5
Q ss_pred HHhcccCcHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHhhc
Q 043955 571 YACSHSGLINEGKKFLEIMRCDYQLDP-WPEHYACLVDLLGRANHLEEAYQFVRSM-QIEPTAE----VWCALLGACRVH 644 (835)
Q Consensus 571 ~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~----~~~~ll~a~~~~ 644 (835)
....+.|.+++++.....-.+. .| |..+-..++.+|+-.|+++.|.+-++.. .+.|+.. .|+.++.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----
Confidence 3456889999999988776643 67 7999999999999999999999888776 4556533 34444433
Q ss_pred CchhHHHHHHHHHHhc--CC---CCCCch---HHHHHHHHhcCCchHHHHHHHHHHcC
Q 043955 645 SNKELGEIVAKKLLEL--DP---GNPGNY---VLISNVFAASRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 645 ~~~~~a~~~~~~~~~l--~p---~~~~~~---~~l~~~y~~~g~~~~a~~~~~~m~~~ 694 (835)
|..=+..+.- .| ..+..+ .+-++.....|+.++|.++|....+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 3334444432 22 223333 34456677789999999999988653
No 267
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=64.59 E-value=9 Score=40.10 Aligned_cols=58 Identities=12% Similarity=-0.035 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHH
Q 043955 635 CALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMR 692 (835)
Q Consensus 635 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 692 (835)
..+..++...|+.+.+...+++++..+|-+...|..|..+|...|+..+|.++.+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666777888888888888888888888888888888888888888877765543
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.73 E-value=1.2e+02 Score=28.91 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=6.2
Q ss_pred hccCChhHHHHHHHh
Q 043955 307 AKCCCVNYMGRVFYQ 321 (835)
Q Consensus 307 ~~~g~~~~A~~~f~~ 321 (835)
+..|..+-...+++.
T Consensus 113 ~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 113 AVYGKVKALKFLYKR 127 (285)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334444444444433
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.15 E-value=2.2e+02 Score=31.57 Aligned_cols=226 Identities=12% Similarity=-0.032 Sum_probs=118.0
Q ss_pred CChHHHHHHHHHHhhcCCcCChhhhHhH----HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhH
Q 043955 441 GLANEALELFYLMNEANVESDSITLVSA----LSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIA 516 (835)
Q Consensus 441 g~~~~Al~lf~~m~~~g~~p~~~t~~~l----l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 516 (835)
.+++.|..+|......+ ..+......+ .......+....+........... .+..+..-.+....+.|+.+.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788999998886543 2233222222 223333442334444444444333 2332333444445577999999
Q ss_pred HHHhhhCCCCC--hhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcC
Q 043955 517 NKVFNCVQTKD--LILWTS-MINANGLHGRGKVAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDY 593 (835)
Q Consensus 517 ~~~f~~~~~~~--~~~~~~-li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 593 (835)
.+.|+.|.... ..-|.- +..++...|+.++|..+|+++.. + .+|.+++.+- +.|..-. .. ..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~--~~fYg~lAa~-~Lg~~~~-------~~-~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----Q--RGFYPMVAAQ-RIGEEYE-------LK-ID 369 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S--CSHHHHHHHH-HTTCCCC-------CC-CC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CChHHHHHHH-HcCCCCC-------CC-CC
Confidence 99999987642 222222 33466778999999999999864 2 2566666432 2221000 00 00
Q ss_pred CCCCC-h-----hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCC---CC
Q 043955 594 QLDPW-P-----EHYACLVDLLGRANHLEEAYQFVRSMQIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDP---GN 664 (835)
Q Consensus 594 ~i~p~-~-----~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p---~~ 664 (835)
.+.|. . ..-..-+..|.+.|...+|...+....-..+......+......+|..+.+..+..+.-..+. .-
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~ 449 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF 449 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC
Confidence 11110 0 011233556778899999988777652223433333444445667888888777654432221 11
Q ss_pred CCchHHHHHHHHhcCCchHH
Q 043955 665 PGNYVLISNVFAASRKWKDV 684 (835)
Q Consensus 665 ~~~~~~l~~~y~~~g~~~~a 684 (835)
|..|.-+..-++..-..+..
T Consensus 450 P~~y~~~i~~~a~~~gv~~~ 469 (618)
T 1qsa_A 450 PLAYNDLFKRYTSGKEIPQS 469 (618)
T ss_dssp CCTTHHHHHHHHTTSSSCHH
T ss_pred CcchHHHHHHHHHHcCCCHH
Confidence 33454444445544444443
No 270
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=56.85 E-value=4.2 Score=34.84 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=28.7
Q ss_pred CCcEEEE----eccccccCccchhhhhhhhhCceEEeecCCccccccCcccC
Q 043955 783 GSLIRIT----KNLRVCVDCHSFCKLVSRLFGRELVVRDANRFHHFEAGVCS 830 (835)
Q Consensus 783 ~~~~~~~----knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 830 (835)
+-.+||+ ++.+||-+| .|+..-..-++.-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4457776 577888887 344444455799999999999874
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.69 E-value=1.1e+02 Score=27.57 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCC
Q 043955 496 EGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGR 543 (835)
Q Consensus 496 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 543 (835)
+..+-...+..+++.|..+....+...+..+|...-...+.+++..|.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 444444444444555544333333333334444433444444444443
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.43 E-value=1.5e+02 Score=30.27 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCH
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQTKD---LILWTSMINANGLHGR--GKVAIDLFYKMEAESFAPDH 563 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~Pd~ 563 (835)
.+.++.=|...|++++|.+.++++..|. .+...++..++-+.+. .+...+++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 3677888888899999999998887663 2344555555554433 34567777777776655444
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.26 E-value=1.3e+02 Score=29.27 Aligned_cols=16 Identities=19% Similarity=0.015 Sum_probs=6.8
Q ss_pred HHHhcCChHHHHHHHh
Q 043955 102 MYAKCYDFRKARQLFD 117 (835)
Q Consensus 102 ~y~~~g~~~~A~~~f~ 117 (835)
..+..|+.+-+..+++
T Consensus 68 ~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 68 QAATLEDTKIVKILLF 83 (285)
T ss_dssp HHTTSSSCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3344444444444443
No 274
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.91 E-value=1.9e+02 Score=29.99 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=37.4
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCCcc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHhcCCh
Q 043955 34 VSNGEPLRVLETYSRMRVLGISVDAFT--FPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDF--IVNSLVAMYAKCYDF 109 (835)
Q Consensus 34 ~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~ 109 (835)
+..|+.+- ++.+.+.|..|+... ..+.|...+..|+.+.+ +.+++.|..++.. ...+.+...++.|+.
T Consensus 22 a~~g~~~~----v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 22 SFMGHLPI----VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA----KYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp HHHTCHHH----HHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHH----HHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred HHCCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 45566543 334445565554321 22334444455665443 3444555444321 122334445566777
Q ss_pred HHHHHHHhh
Q 043955 110 RKARQLFDR 118 (835)
Q Consensus 110 ~~A~~~f~~ 118 (835)
+-+.-+++.
T Consensus 94 ~~v~~Ll~~ 102 (437)
T 1n11_A 94 NMVKLLLEN 102 (437)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 766666664
No 275
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.82 E-value=2.2e+02 Score=30.00 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 043955 331 TTIIAGYAQNNCHLKALELFRTVQLE 356 (835)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (835)
..|...|-..|++.+|..++..+...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~E 166 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVE 166 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677888889999999998888654
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.90 E-value=1.3e+02 Score=28.04 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=7.0
Q ss_pred HhCCChhHHHHHHhc
Q 043955 206 ARCGKMTEAAGVLYQ 220 (835)
Q Consensus 206 ~~~g~~~~A~~~f~~ 220 (835)
+..|+.+-...+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 344454444444444
No 277
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=51.17 E-value=68 Score=27.27 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 043955 546 VAIDLFYKMEAESFAPDHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVD 607 (835)
Q Consensus 546 ~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 607 (835)
+..+-++.+....+-|+.....+.|.||.+..++.-|.++|+..+.+-| +..+.|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445556666667899999999999999999999999999998886543 44556766654
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=50.94 E-value=2.3e+02 Score=29.38 Aligned_cols=289 Identities=10% Similarity=0.044 Sum_probs=136.1
Q ss_pred CCChHhHHHHHHhcCCCCc---chHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCC---ccHHHHHHHHhccCCchHHH
Q 043955 5 CGSVLDAEQLFDKVSQRTV---FTWNAMLGAYVSNGEPLRVLETYSRMRVLGISVDA---FTFPCVIKACAMLKDLDCGA 78 (835)
Q Consensus 5 ~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~ 78 (835)
.|+++-...+++.-..++. .-.+. +..-+..|+.+-+ +.+.+.|..++. ...+ .|...+..|+.+
T Consensus 24 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~--- 94 (437)
T 1n11_A 24 MGHLPIVKNLLQRGASPNVSNVKVETP-LHMAARAGHTEVA----KYLLQNKAKVNAKAKDDQT-PLHCAARIGHTN--- 94 (437)
T ss_dssp HTCHHHHHHHHHTTCCSCCSSSCCCCH-HHHHHHHTCHHHH----HHHHHHTCCSSCCCTTSCC-HHHHHHHHTCHH---
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHH----HHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHH---
Confidence 4667766667765443322 22233 3334456665443 334444544433 2223 344445566654
Q ss_pred HHHHHHHHhCCCCCcc--hHHHHHHHHHhcCChHHHHHHHhhcCCC--CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 043955 79 KIHGLVLKCGYDSTDF--IVNSLVAMYAKCYDFRKARQLFDRMGEK--EDVVLWNSIISAYSASGQCLEALGLFREMQRV 154 (835)
Q Consensus 79 ~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 154 (835)
+.+.+++.|..++.. .....+...++.|+.+-+..+++.-... .+..-++. +...++.|+.+ +++.+.+.
T Consensus 95 -~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~ 168 (437)
T 1n11_A 95 -MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVR----VAELLLER 168 (437)
T ss_dssp -HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHT
T ss_pred -HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHH----HHHHHHhC
Confidence 455566667655532 1223445566778988888888764220 12222233 34445566654 44445555
Q ss_pred CCCCChhh--HHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHHhcCCCC---Ccc
Q 043955 155 GLVTNAYT--FVAALQACEDSSFETLGMEIHAATVKSGQNLQVYV--ANALIAMYARCGKMTEAAGVLYQLENK---DSV 227 (835)
Q Consensus 155 g~~p~~~t--~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~~---d~~ 227 (835)
|..|+... -.+.|...+..++.+ +...+++.|..++... ....+...++.|+.+-+..+++.-... +..
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 244 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence 65554321 112233334445544 3444455565443221 123344556677777777777653332 222
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccCChHhHHHHHHHHHHhCCCcccc--ccchhh
Q 043955 228 SWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVC--TVNAVSASGRLGNLLNGKELHAYAIKQGFVSDLQ--IGNTLM 303 (835)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li 303 (835)
.++.+. ..++.|..+ +++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++.. ...+.+
T Consensus 245 g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L 315 (437)
T 1n11_A 245 GVTPLH-LAAQEGHAE----MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP----VADVLIKHGVMVDATTRMGYTPL 315 (437)
T ss_dssp CCCHHH-HHHHTTCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHHTCCTTCCCSSCCCHH
T ss_pred CCCHHH-HHHHCCCHH----HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCccCCCCCCCCCCHH
Confidence 233333 233445433 3334444554443221 112233333445544 334445556544322 222334
Q ss_pred hhhhccCChhHHHHHHHh
Q 043955 304 DMYAKCCCVNYMGRVFYQ 321 (835)
Q Consensus 304 ~~y~~~g~~~~A~~~f~~ 321 (835)
...+..|..+-+.-+++.
T Consensus 316 ~~A~~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 316 HVASHYGNIKLVKFLLQH 333 (437)
T ss_dssp HHHHHSSCSHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHhc
Confidence 444555666655555554
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.68 E-value=1.6e+02 Score=27.35 Aligned_cols=113 Identities=5% Similarity=-0.108 Sum_probs=50.1
Q ss_pred HHhCCChhHHHHHHhcCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhccCChHh
Q 043955 205 YARCGKMTEAAGVLYQLENK---DSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQV--CTVNAVSASGRLGNLLN 279 (835)
Q Consensus 205 y~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~ 279 (835)
.+..|+.+-...+++.-..+ |...++. +...+..|+.+-...+++.....++.++.. .-.+.+...+..++.
T Consensus 53 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-- 129 (241)
T 1k1a_A 53 AVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ-- 129 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH--
T ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH--
Confidence 33445555444444432222 2222233 333445666554444444332111222221 111223333344554
Q ss_pred HHHHHHHHHHhCCCcccc---ccchhhhhhhccCChhHHHHHHHhc
Q 043955 280 GKELHAYAIKQGFVSDLQ---IGNTLMDMYAKCCCVNYMGRVFYQM 322 (835)
Q Consensus 280 a~~i~~~~~~~g~~~~~~---~~~~Li~~y~~~g~~~~A~~~f~~m 322 (835)
++.+.+++.|..++.. .....+...++.|..+-+..+++.-
T Consensus 130 --~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 173 (241)
T 1k1a_A 130 --ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173 (241)
T ss_dssp --HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred --HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 3445555666655432 2344555556667777666666653
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=50.39 E-value=1.4e+02 Score=26.85 Aligned_cols=150 Identities=14% Similarity=0.077 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccc
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSI 477 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~ 477 (835)
+....+....+.|..+....+.+.+..+|...-...+.++.+.|.. ++...+.++.. .|+...-...+.+....+.
T Consensus 30 vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 30 VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 4444445555555544445555555555554444445555555543 34444444443 3555555566666666665
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 478 LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 478 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
.+....+...+ -.++..+-...+...++.|..+....+...+..++...-...+.++...|. .+++..+.++..
T Consensus 106 ~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 106 ERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp GGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 44333333322 356777777778888888875544445555556666666666666666664 456666666664
No 281
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.07 E-value=44 Score=33.28 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=32.0
Q ss_pred CCCCCHH--HHHHHHHHHhhcCchhHHHHHHHHHHhcCCC
Q 043955 626 QIEPTAE--VWCALLGACRVHSNKELGEIVAKKLLELDPG 663 (835)
Q Consensus 626 ~~~p~~~--~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 663 (835)
+++|.-. ++++-++.+.+++|+..|...+++++++.|.
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 6777433 6777778899999999999999999999885
No 282
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=48.61 E-value=73 Score=28.27 Aligned_cols=119 Identities=10% Similarity=0.043 Sum_probs=62.2
Q ss_pred CCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-------hhHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 043955 557 ESFAPDHI--TFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-------PEHYACLVDLLGRANHLEEAYQFVRSM-- 625 (835)
Q Consensus 557 ~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-------~~~y~~lv~~l~r~g~~~eA~~~~~~m-- 625 (835)
.|+.|... ++..-+..+...|+++.|.-+.+-+..-.+.+|+ .+++..++|++...|++..|...+++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 46666653 3555566777888888887766654332222333 346677788888888888888877763
Q ss_pred -----CCCCCHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHH
Q 043955 626 -----QIEPTAEVWCALLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRM 689 (835)
Q Consensus 626 -----~~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 689 (835)
+-.|.. .+.++. . .....-+.+ +.+...-..++..|.+.|++++|..+.+
T Consensus 92 ~~k~l~k~~s~---~~~~~~---~-------ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 92 QKKALSKTSKV---RPSTGN---S-------ASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCCc---cccccc---c-------CCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 111111 000000 0 000000111 2223445678899999999999999865
No 283
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.55 E-value=55 Score=31.29 Aligned_cols=53 Identities=8% Similarity=-0.162 Sum_probs=27.3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh-------hHHHHHHHhh--cCCChhHHHHHHHHH
Q 043955 134 AYSASGQCLEALGLFREMQRVGLVTNAY-------TFVAALQACE--DSSFETLGMEIHAAT 186 (835)
Q Consensus 134 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~~--~~~~~~~a~~l~~~~ 186 (835)
..++.|+.+....+++.+.+.|..++.. -.+.|..|+. +.|..+.++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3445566666666666666555554422 2233333332 456666555555543
No 284
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=47.83 E-value=4.6 Score=25.93 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=10.4
Q ss_pred ccccccCccchhh
Q 043955 791 NLRVCVDCHSFCK 803 (835)
Q Consensus 791 nlr~c~dch~~~k 803 (835)
|-|||.+||--+-
T Consensus 16 ~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 16 QYRVCEKCGKPLA 28 (44)
T ss_dssp CEEECTTTCCEEE
T ss_pred cchhhcccCCcch
Confidence 6899999996543
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.45 E-value=89 Score=28.14 Aligned_cols=111 Identities=12% Similarity=0.015 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCCCcch--HHHHHHHHHhcCChHHHHHHHhhcCCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 043955 79 KIHGLVLKCGYDSTDFI--VNSLVAMYAKCYDFRKARQLFDRMGEKE---DVVLWNSIISAYSASGQCLEALGLFREMQR 153 (835)
Q Consensus 79 ~i~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 153 (835)
++.+.+++.|..++... ....+...+..|+.+-+..+++.-+..+ |..-++.| ...++.|+.+-+. .+.+
T Consensus 53 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~----~Ll~ 127 (201)
T 3hra_A 53 EIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVK----LLLE 127 (201)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHH----HHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHH----HHHH
Confidence 34445555665554321 1233444456677777777775543212 22222222 3344455544333 3333
Q ss_pred CC-CCC---ChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCc
Q 043955 154 VG-LVT---NAYTFVAALQACEDSSFETLGMEIHAATVKSGQNLQ 194 (835)
Q Consensus 154 ~g-~~p---~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~ 194 (835)
.| ..+ |..-.+.+..++........-.++...+++.|..++
T Consensus 128 ~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 33 222 222333333343332222223455666666665554
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.88 E-value=1.7e+02 Score=26.63 Aligned_cols=149 Identities=14% Similarity=0.055 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhcccch
Q 043955 399 LNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLSIL 478 (835)
Q Consensus 399 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 478 (835)
....+....+.|..+....+.+.+.++|...-...+.++.+.+.. +++..+.++.. .||...-...+.+....+..
T Consensus 36 R~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 36 RRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcH
Confidence 333344444444433334444444444444434444444554432 33444444433 34554545555555555554
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043955 479 KKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINANGLHGRGKVAIDLFYKMEA 556 (835)
Q Consensus 479 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 556 (835)
+....+... --+++..+-...+...++.|..+....+...+..+|...-...+.++...|. .+++..+.++.+
T Consensus 112 ~~~~~L~~~----l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 112 RAVEPLIKA----LKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp GGHHHHHHH----TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHH----HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 332222222 1356677777777778787775544444455555666666666677776665 456666666665
No 287
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=46.65 E-value=1.3e+02 Score=25.44 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=53.4
Q ss_pred HHHHHHHH-HC-CCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHHHHH
Q 043955 548 IDLFYKME-AE-SFAPDHITFLALLYACSHSG---LINEGKKFLEIMRCDYQLDP--WPEHYACLVDLLGRANHLEEAYQ 620 (835)
Q Consensus 548 l~l~~~m~-~~-g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p--~~~~y~~lv~~l~r~g~~~eA~~ 620 (835)
+..|++.- .+ +-.|...|--.+..++.|+. ++.+|+.+++...+. .| ..+.+--+.-.+.|.|++++|.+
T Consensus 23 L~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 23 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444433 22 33455544334444555554 456788888877754 25 25666667788889999999999
Q ss_pred HHHhC-CCCCCHHH
Q 043955 621 FVRSM-QIEPTAEV 633 (835)
Q Consensus 621 ~~~~m-~~~p~~~~ 633 (835)
+++.. .++|+..-
T Consensus 100 y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 100 YVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHTTCTTCHH
T ss_pred HHHHHHhhCCCCHH
Confidence 99988 78886543
No 288
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.25 E-value=2.2e+02 Score=34.36 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC---HHHHHHHHHHHhhcCchhHHHHHH
Q 043955 600 EHYACLVDLLGRANHLEEAYQFVRSM----QIEPT---AEVWCALLGACRVHSNKELGEIVA 654 (835)
Q Consensus 600 ~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~---~~~~~~ll~a~~~~~~~~~a~~~~ 654 (835)
.-|.-++.++.+.|.++.|.++.+.+ +-+++ ...|..+..++-.-|+++.|..+.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 34566667777777777777665543 21211 114666666666666666654444
No 289
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.81 E-value=68 Score=33.84 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHH--H
Q 043955 499 VASSLVDMYARCGALDIANKVFNCVQT------KDLILWTSMINANGLHGRGKVAIDLFYKMEA---ESFAPDHITF--L 567 (835)
Q Consensus 499 ~~~~li~~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~Al~l~~~m~~---~g~~Pd~~t~--~ 567 (835)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-..|..+...+++..+....++... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556788999999999999999987763 2334677778888889999999888888754 3333443321 1
Q ss_pred HHHHHhcccCcHHHHHHHHHHhhhcCC
Q 043955 568 ALLYACSHSGLINEGKKFLEIMRCDYQ 594 (835)
Q Consensus 568 ~ll~a~~~~g~~~~a~~~~~~m~~~~~ 594 (835)
.-.-.+.+.+++.+|-++|-.....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 122235577888888888876655544
No 290
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=43.69 E-value=21 Score=19.51 Aligned_cols=15 Identities=47% Similarity=0.981 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHHh
Q 043955 724 SDEIYKKLAEITEKL 738 (835)
Q Consensus 724 ~~~i~~~l~~l~~~~ 738 (835)
.+++|.+|+.|.+++
T Consensus 3 adelykeledlqerl 17 (27)
T 3twe_A 3 ADELYKELEDLQERL 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999998887
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.85 E-value=57 Score=31.96 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=10.4
Q ss_pred HHHHHHhhcCCcCChhh
Q 043955 448 ELFYLMNEANVESDSIT 464 (835)
Q Consensus 448 ~lf~~m~~~g~~p~~~t 464 (835)
++.+.+.+.|..|+...
T Consensus 209 ~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 44555566677776665
No 292
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.59 E-value=1.1e+02 Score=32.16 Aligned_cols=96 Identities=11% Similarity=-0.071 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCChh----HHH
Q 043955 530 LWTSMINANGLHGRGKVAIDLFYKMEAESFAPDH--ITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPWPE----HYA 603 (835)
Q Consensus 530 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~----~y~ 603 (835)
++..+..-|...|+.++|++.|.++...-..+.. ..+..++..|...+++..+..+.+.......-.++.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677888899999999999999999986555554 3577888899999999999999988765433333321 223
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 043955 604 CLVDLLGRANHLEEAYQFVRSM 625 (835)
Q Consensus 604 ~lv~~l~r~g~~~eA~~~~~~m 625 (835)
+-+-.+...+++.+|.+.+-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 3344455678999998877655
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.64 E-value=1.2e+02 Score=28.05 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=7.1
Q ss_pred HHHhcCChhhHHHHhh
Q 043955 506 MYARCGALDIANKVFN 521 (835)
Q Consensus 506 ~y~k~g~~~~A~~~f~ 521 (835)
...+.|+.+-+.-+.+
T Consensus 216 ~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHH
Confidence 3344454444444443
No 294
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.74 E-value=1.1e+02 Score=31.15 Aligned_cols=18 Identities=0% Similarity=-0.219 Sum_probs=10.1
Q ss_pred HHHHhCCChhHHHHHHhc
Q 043955 203 AMYARCGKMTEAAGVLYQ 220 (835)
Q Consensus 203 ~~y~~~g~~~~A~~~f~~ 220 (835)
...+..|+.+-+..+++.
T Consensus 178 ~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334455666666666654
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.44 E-value=2e+02 Score=25.64 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=67.8
Q ss_pred HHhCCChhHHHHHHhcCC-C---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccCChH
Q 043955 205 YARCGKMTEAAGVLYQLE-N---KDSVSWNSMLTGFVQNDLYCKAMQFFRELQGAGQKPDQVC--TVNAVSASGRLGNLL 278 (835)
Q Consensus 205 y~~~g~~~~A~~~f~~~~-~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~ 278 (835)
.+..|+.+....++..-. . +|..-++.+..+ ++.|+ .++++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNND----IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345566666666665543 1 233333343333 33444 334445555666555332 112333344455555
Q ss_pred hHHHHHHHHHHhCCCcccc--ccchhhhhhhccCChhHHHHHHHhc-CC---CCcccHHHHHHHHHhcCChHHHHHHHHH
Q 043955 279 NGKELHAYAIKQGFVSDLQ--IGNTLMDMYAKCCCVNYMGRVFYQM-TA---QDFISWTTIIAGYAQNNCHLKALELFRT 352 (835)
Q Consensus 279 ~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (835)
..+.++. ..+..++.. ...+.+...++.|..+-+..+++.- .. +|..-++.+..+.........-.++.+.
T Consensus 87 ~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 87 ILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp HHHHHHH---HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHh---ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 4443332 223222211 1223344455566776666666654 21 2333344444443333223333555555
Q ss_pred HHHcCCCCC
Q 043955 353 VQLEGLDAD 361 (835)
Q Consensus 353 m~~~g~~p~ 361 (835)
+.+.|..|+
T Consensus 164 Ll~~ga~~~ 172 (201)
T 3hra_A 164 LMENGADQS 172 (201)
T ss_dssp HHHTTCCTT
T ss_pred HHHCCCCCC
Confidence 666665554
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.50 E-value=1.7e+02 Score=27.03 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=22.8
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHhcCChHHHHHHHhhc
Q 043955 69 AMLKDLDCGAKIHGLVLKCGYDSTDF--IVNSLVAMYAKCYDFRKARQLFDRM 119 (835)
Q Consensus 69 ~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m 119 (835)
+..|+.+.. ..+++.|..++.. .....+...++.|+++-+..+++.-
T Consensus 17 ~~~g~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 17 TQYGIYERC----RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHcCChHHH----HHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 345554433 3344455444322 1223444555666666666666544
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.78 E-value=95 Score=29.51 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=49.9
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCCc-------cHHHHHHHHh--ccCCchHHHHHHHHHHHhC---------CCCCc
Q 043955 32 AYVSNGEPLRVLETYSRMRVLGISVDAF-------TFPCVIKACA--MLKDLDCGAKIHGLVLKCG---------YDSTD 93 (835)
Q Consensus 32 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~-------~~~~ll~~~~--~~~~~~~a~~i~~~~~~~g---------~~~~~ 93 (835)
..++.|+.+....+++.+...|..++.. -.+.|..++. +.|+.+.++.+.+.-...+ +....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3457788888888888777777666633 3344554442 5677777777666543311 11100
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhh
Q 043955 94 FIVNSLVAMYAKCYDFRKARQLFDR 118 (835)
Q Consensus 94 ~~~~~Li~~y~~~g~~~~A~~~f~~ 118 (835)
....+.+...+..|+.+-+.-+++.
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 0122334445566787777766664
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.73 E-value=2e+02 Score=26.30 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=43.9
Q ss_pred cHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccC-----chHHHHHHHHHHHhCCC
Q 043955 329 SWTTIIAGYA---QNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKC-----MSQTKEIHGYIIRKGLS 394 (835)
Q Consensus 329 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~~~i~~~~~~~~~~ 394 (835)
..--+|+++. +-.+++.|+-.+-+|++.| .|..+.-..++.+....|. +..+...+....+.|.|
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3344566654 5689999999999999999 7777666667777655553 33444455555555555
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.92 E-value=3.4e+02 Score=26.79 Aligned_cols=201 Identities=10% Similarity=0.060 Sum_probs=93.6
Q ss_pred cchhhhhhhccCChhHHHHHHHhcCCCCc--ccHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChh--HHHHHHHHh
Q 043955 299 GNTLMDMYAKCCCVNYMGRVFYQMTAQDF--ISWTTIIAGYAQNNC--HLKALELFRTVQLEGLDADVM--IIGSVLMAC 372 (835)
Q Consensus 299 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~ 372 (835)
...++.-|...|+.++|...++++..+.- ..-..+|..-...++ -+.+-.++..+...-+.++.+ .|..++..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 35678889999999999999999987641 222233333333332 344555667775422333332 244444444
Q ss_pred cccc-CchHHHHHHHHHHH----hCC-CchhHHHHHHHHHHhcCC--hhhHHHHHH------hcCC----CC----c---
Q 043955 373 SGLK-CMSQTKEIHGYIIR----KGL-SDLVILNAIVDVYGKCGN--IDYSRNVFE------SIES----KD----V--- 427 (835)
Q Consensus 373 ~~~~-~~~~~~~i~~~~~~----~~~-~~~~~~~~li~~y~k~g~--~~~A~~~f~------~~~~----~~----~--- 427 (835)
.... +...+....+..+. .+. +...+....-..-...|. +..|..++. .+.. ++ .
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Confidence 4332 34444444444333 222 111111100000000000 122222221 0100 01 1
Q ss_pred -hhHHHHHHHHHhCCChHHHHHHHHHHhhcCCcCChhhhHhHHHHhhccc--chhhHHHHHHHHHHhCCCCchhHH
Q 043955 428 -VSWTSMISSYVHNGLANEALELFYLMNEANVESDSITLVSALSAASSLS--ILKKGKELNGFIIRKGFNLEGSVA 500 (835)
Q Consensus 428 -~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~ 500 (835)
...+.++.=|...|+.+||.+.++++......| .+....+..+.-+.+ ..+....++..+.+.|+-+...+.
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 124567888888999999999999986322221 122223333333321 233444555555555554443333
No 300
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=34.65 E-value=6.1e+02 Score=29.59 Aligned_cols=249 Identities=11% Similarity=0.059 Sum_probs=127.5
Q ss_pred ccCChhHHHHHHHhcCCC----C--cccHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC---h-hHHHH---HHHHh
Q 043955 308 KCCCVNYMGRVFYQMTAQ----D--FISWTTIIAGYAQNNCHLKALELFRTVQLEGL--DAD---V-MIIGS---VLMAC 372 (835)
Q Consensus 308 ~~g~~~~A~~~f~~m~~~----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~-~t~~~---ll~a~ 372 (835)
..|+.+++..+++..... + +..-..+.-|.+..|...+++.++.......- .-+ . ..... +--++
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 345666666666665431 1 11223334456666766677777776654321 000 1 11111 11122
Q ss_pred ccccCchHHHHHHHHHHHhCCCch--hHHHHHHHHHHhcCChhhHHHHHHhcCC--CCchh-HHHHHHHHHhCCChHHHH
Q 043955 373 SGLKCMSQTKEIHGYIIRKGLSDL--VILNAIVDVYGKCGNIDYSRNVFESIES--KDVVS-WTSMISSYVHNGLANEAL 447 (835)
Q Consensus 373 ~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~Al 447 (835)
...++- .+...+..++....... ...-+|.-.|.-.|+-+....++..+.+ .+.+. .-++.-|+.-.|+.+.+-
T Consensus 466 ~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~ 544 (963)
T 4ady_A 466 MGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELAD 544 (963)
T ss_dssp TTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGH
T ss_pred cCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHH
Confidence 223332 23333333333221111 1333444455566776666666665432 22222 223334555778888888
Q ss_pred HHHHHHhhcCCcCCh-hhhH---hHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcCChhhHHHHhh
Q 043955 448 ELFYLMNEANVESDS-ITLV---SALSAASSLSILKKGKELNGFIIRKGFNLEGSVASSLVDMYA--RCGALDIANKVFN 521 (835)
Q Consensus 448 ~lf~~m~~~g~~p~~-~t~~---~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~--k~g~~~~A~~~f~ 521 (835)
.+.+.+... .|+ .-|. ++--+|+..|+.....+++..+... ++..+-.+.+-+.+ -.|+.+.+.++++
T Consensus 545 ~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 545 DLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp HHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 887777652 222 2232 2234677788887777788777753 23333344444444 3677788888887
Q ss_pred hCCC-CChhH--HHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHH
Q 043955 522 CVQT-KDLIL--WTSMINANGLHGRG-KVAIDLFYKMEAESFAPDHITF 566 (835)
Q Consensus 522 ~~~~-~~~~~--~~~li~~~~~~g~~-~~Al~l~~~m~~~g~~Pd~~t~ 566 (835)
.+.+ .|... --++.-|..-.|.+ .+|++++..+.. .+|..+-
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 6542 34433 33344445555655 578889999875 5565443
No 301
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.33 E-value=1.6e+02 Score=27.18 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=8.0
Q ss_pred HHHhcCChHHHHHHHhh
Q 043955 102 MYAKCYDFRKARQLFDR 118 (835)
Q Consensus 102 ~y~~~g~~~~A~~~f~~ 118 (835)
..++.|+.+-+..+++.
T Consensus 17 ~A~~~g~~~~v~~Ll~~ 33 (237)
T 3b7b_A 17 AAAEAGHVDICHMLVQA 33 (237)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHc
Confidence 33444555544444443
No 302
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=33.77 E-value=1.9e+02 Score=27.66 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=8.2
Q ss_pred HhCCChhHHHHHHhc
Q 043955 206 ARCGKMTEAAGVLYQ 220 (835)
Q Consensus 206 ~~~g~~~~A~~~f~~ 220 (835)
+..|+.+-+..+++.
T Consensus 109 ~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 109 IERRNMTLVTLLVEN 123 (273)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 445555555555554
No 303
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=32.03 E-value=8.8 Score=21.08 Aligned_cols=13 Identities=46% Similarity=1.505 Sum_probs=8.5
Q ss_pred cccCccc--CCCCCC
Q 043955 823 HFEAGVC--SCGDYW 835 (835)
Q Consensus 823 ~f~~g~c--sc~d~w 835 (835)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4677777 366655
No 304
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=31.48 E-value=15 Score=26.73 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=16.9
Q ss_pred ceEEeecCCccccccCcccC
Q 043955 811 RELVVRDANRFHHFEAGVCS 830 (835)
Q Consensus 811 r~i~~rd~~rfh~f~~g~cs 830 (835)
..|=+.|.+-.|+||||+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEE
T ss_pred eeEecCCCcEEEEEcCCcee
Confidence 45778999999999999854
No 305
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=31.41 E-value=6.9e+02 Score=29.18 Aligned_cols=279 Identities=15% Similarity=0.088 Sum_probs=135.4
Q ss_pred HHHHHhcCChhhHHHHHHhcCCC----Cc--hhHHHHHHHHHhCCChHHHHHHHHHHhhcCC--cC---ChhhhHhHHHH
Q 043955 403 VDVYGKCGNIDYSRNVFESIESK----DV--VSWTSMISSYVHNGLANEALELFYLMNEANV--ES---DSITLVSALSA 471 (835)
Q Consensus 403 i~~y~k~g~~~~A~~~f~~~~~~----~~--~~~~~li~~~~~~g~~~~Al~lf~~m~~~g~--~p---~~~t~~~ll~a 471 (835)
--+....|+.+++..+++..... +. ..-..+.-|.+..|..++++.++...+...- .- +...-....-+
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 33455678888999988876542 21 1222334466777777788888777665321 00 01111111111
Q ss_pred h--hcccch-hhHHHHHHHHHHhCCCCchh----HHHHHHHHHHhcCChhhHHHHhhhCCC--CC-hhHHHHHHHHHHhc
Q 043955 472 A--SSLSIL-KKGKELNGFIIRKGFNLEGS----VASSLVDMYARCGALDIANKVFNCVQT--KD-LILWTSMINANGLH 541 (835)
Q Consensus 472 ~--~~~~~~-~~a~~i~~~~~~~g~~~~~~----~~~~li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~ 541 (835)
+ +..|.- +.+...+..++.. .+.. ..-+|.-.|.-.|+-+....++..+.+ .+ +.-.-++.-|+..-
T Consensus 461 LGla~~GS~~eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 1 112221 2333333333332 1222 222344445555666666666654332 22 22233344445577
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHH---HHHHHhcccCcHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh--hcCCH
Q 043955 542 GRGKVAIDLFYKMEAESFAPDH-ITFL---ALLYACSHSGLINEGKKFLEIMRCDYQLDPWPEHYACLVDLLG--RANHL 615 (835)
Q Consensus 542 g~~~~Al~l~~~m~~~g~~Pd~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~--r~g~~ 615 (835)
|+.+.+-.+.+.+... +|. +-|. ++..||+-.|+...-.+++..+..+ ++...-...+-.++ -.|..
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSC
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCH
Confidence 8888888888888762 343 3343 3445788888988777788887754 22222233333333 34554
Q ss_pred HHHHHHHHhCCCCCCHHHHH----HHHHHHhhcCchhHHHHHHHHHHhcCCCCC---CchHHHHHHHHhcCCc--hHHHH
Q 043955 616 EEAYQFVRSMQIEPTAEVWC----ALLGACRVHSNKELGEIVAKKLLELDPGNP---GNYVLISNVFAASRKW--KDVEQ 686 (835)
Q Consensus 616 ~eA~~~~~~m~~~p~~~~~~----~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~--~~a~~ 686 (835)
+.+.++++.+--..|+.+-. +|.-.|.-.++ ..+.....++. -|+++. ++...|+.+-+...+- ..+..
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~-~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~ 688 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLT-KDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHhcCCccccchHHHH
Confidence 44555555442223443322 22233333333 44555666554 233321 2233444444333222 13666
Q ss_pred HHHHHHc
Q 043955 687 VRMRMRG 693 (835)
Q Consensus 687 ~~~~m~~ 693 (835)
+++.+.+
T Consensus 689 ~l~~L~~ 695 (963)
T 4ady_A 689 INKNFLS 695 (963)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
No 306
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.59 E-value=3e+02 Score=25.13 Aligned_cols=48 Identities=8% Similarity=-0.139 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCCCCcch--HHHHHHHHhccCChHhHHHHHHHHHHhCCCc
Q 043955 247 QFFRELQGAGQKPDQVC--TVNAVSASGRLGNLLNGKELHAYAIKQGFVS 294 (835)
Q Consensus 247 ~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 294 (835)
++++.+.+.|..++... -.+.+..++..++.+.+..+.+.+++.|..+
T Consensus 135 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 135 EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 34444455666555331 2244555666777777777778888777644
No 307
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.86 E-value=2e+02 Score=26.18 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccc
Q 043955 332 TIIAGYA---QNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLK 376 (835)
Q Consensus 332 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 376 (835)
-+|+++. +-.+++.|+-.+-+|++.|..|..+.-..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455554 56899999999999999998888877777777665544
No 308
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.67 E-value=2.5e+02 Score=27.95 Aligned_cols=31 Identities=6% Similarity=-0.120 Sum_probs=21.6
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 043955 329 SWTTIIAGYAQNNCHLKALELFRTVQLEGLD 359 (835)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 359 (835)
+...-++...+.+++..|..+-+++++.+..
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3455566677778888888888888776543
No 309
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=29.53 E-value=5.7 Score=30.11 Aligned_cols=14 Identities=43% Similarity=0.956 Sum_probs=11.2
Q ss_pred eccccccCccchhh
Q 043955 790 KNLRVCVDCHSFCK 803 (835)
Q Consensus 790 knlr~c~dch~~~k 803 (835)
|--|||.|||+...
T Consensus 20 kldrVCdDCyNLyR 33 (78)
T 1j0t_A 20 KVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45689999998764
No 310
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.50 E-value=2.8e+02 Score=25.59 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=46.3
Q ss_pred cHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccccC-----chHHHHHHHHHHHhCCC
Q 043955 329 SWTTIIAGYA---QNNCHLKALELFRTVQLEGLDADVMIIGSVLMACSGLKC-----MSQTKEIHGYIIRKGLS 394 (835)
Q Consensus 329 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~~~i~~~~~~~~~~ 394 (835)
..--+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+....|. +..+...+....+.|.|
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4445566664 468999999999999999999888777777777655543 34444555555555655
No 311
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.37 E-value=2.4e+02 Score=25.17 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=30.2
Q ss_pred HhcCChHHHHHHHhhcCCCCC-eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 043955 104 AKCYDFRKARQLFDRMGEKED-VVLWNSIISAYSASGQCLEALGLFREMQRVGLVTNA 160 (835)
Q Consensus 104 ~~~g~~~~A~~~f~~m~~~~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 160 (835)
++.|+++....+++.-....+ ..-+ +.+...+..|+.+.-.++.+.+.+.|..||.
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 455677666666654322111 1112 3344445566666566677777777766654
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.28 E-value=4e+02 Score=26.29 Aligned_cols=156 Identities=10% Similarity=0.046 Sum_probs=78.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHhcCCCCCcc--cHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCCCcc---hHHHHHHH
Q 043955 198 ANALIAMYARCGKMTEAAGVLYQLENKDSV--SWNSMLTGFVQNDL--YCKAMQFFRELQGAGQKPDQV---CTVNAVSA 270 (835)
Q Consensus 198 ~~~li~~y~~~g~~~~A~~~f~~~~~~d~~--~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a 270 (835)
...+|.-|...|+.++|...++++..|... .-..+|......++ -+.+-.++..+.. ++-+... .|..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 367888898999999999999998776421 12222332222222 2334456666653 3333222 24444444
Q ss_pred HhccC-ChHhHHHHHHH----HHHhCCCccccccchhhhhhhccCC--hhHHHHHHHhcCC----------CCc------
Q 043955 271 SGRLG-NLLNGKELHAY----AIKQGFVSDLQIGNTLMDMYAKCCC--VNYMGRVFYQMTA----------QDF------ 327 (835)
Q Consensus 271 ~~~~~-~~~~a~~i~~~----~~~~g~~~~~~~~~~Li~~y~~~g~--~~~A~~~f~~m~~----------~~~------ 327 (835)
+.... +...+..++.. ++..++-|-.++....-..-...|. +..|..++..-.. .+.
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 43322 33344444444 3444544433333322211111111 3334433321100 010
Q ss_pred --ccHHHHHHHHHhcCChHHHHHHHHHHH
Q 043955 328 --ISWTTIIAGYAQNNCHLKALELFRTVQ 354 (835)
Q Consensus 328 --~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (835)
.-.+.++.-|...|+.++|...++++.
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 124577888888899999999998885
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=28.48 E-value=4.8e+02 Score=26.42 Aligned_cols=65 Identities=11% Similarity=0.205 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCC---chhHHHHHHHHHhCCC--hHHHHHHHHHHhhcCCcCCh
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKD---VVSWTSMISSYVHNGL--ANEALELFYLMNEANVESDS 462 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~Al~lf~~m~~~g~~p~~ 462 (835)
-.+.++.=|...|+.++|.+.++++..|. .+...++..+.-+.++ .+...+++..+...|+-+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 34678888889999999999999998764 2334445555554433 34577888888877754443
No 314
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=28.32 E-value=1.2e+02 Score=35.40 Aligned_cols=123 Identities=14% Similarity=-0.000 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 043955 562 DHITFLALLYACSHSGLINEGKKFLEIMRCDYQLDPW-PEHYACLVDLLGRANHLEEAYQFVRSMQIEP-TAEVWCALLG 639 (835)
Q Consensus 562 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~ 639 (835)
|-.--.+.|+++.+...-++++.-|. +++.-+|- ++-|-.+.-.-.+.+-++...++.+.-.+.+ ++--.++|++
T Consensus 730 nmtd~~~al~~~~~~~~~~~~l~~f~---~~~~~~~lv~dkwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~r~l~g 806 (889)
T 3ebh_A 730 YPSNWLTSLSVSAYFDKYFELYDKTY---KLSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYL 806 (889)
T ss_dssp CHHHHHHHHHHGGGSTTHHHHHHHHH---HHHTTSHHHHHHHHHHHHTCCCTTHHHHHHHHHHHTTTTCCCHHHHHHHHT
T ss_pred ChhHHHHHHHHHhcChhHHHHHHHHH---HHhCCCcchhhHhHHHhhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHH
Confidence 44334455666655444445555544 33333442 4445444443334445666666666655554 5556788988
Q ss_pred HHh-----hcCchhHH-HHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHH
Q 043955 640 ACR-----VHSNKELG-EIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQV 687 (835)
Q Consensus 640 a~~-----~~~~~~~a-~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 687 (835)
++. -|..-..| .-+++.+++++|-||..-..|...+..-.++++..+.
T Consensus 807 ~f~~n~~~fh~~~g~gy~~~~~~~~~ld~~np~~a~r~~~~~~~~~~~~~~r~~ 860 (889)
T 3ebh_A 807 PFTNNLRRFHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQE 860 (889)
T ss_dssp GGGGCHHHHTCTTSHHHHHHHHHHHHHHTTCHHHHHHTTGGGGGGGGBCHHHHH
T ss_pred HHhcChhhccCCCCcHHHHHHHHHHHHcccChHHHHHHHHHHHHHHhcCHHHHH
Confidence 865 11111233 5578899999999998888888888888888776543
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.00 E-value=2.7e+02 Score=23.34 Aligned_cols=64 Identities=11% Similarity=0.216 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCCc---hhHHHHHHHHHhCCC--hHHHHHHHHHHhhcCCcCC
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKDV---VSWTSMISSYVHNGL--ANEALELFYLMNEANVESD 461 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~Al~lf~~m~~~g~~p~ 461 (835)
-.+.++.=|...|+.++|.+.++++..|.- +...++..++-+.+. .+....++..+...|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456788888899999999999999976632 334445555555432 3567788888877665443
No 316
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.96 E-value=1.6e+02 Score=26.74 Aligned_cols=59 Identities=15% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCCCHH--HHHH-----HHHHHhhcCchhHHHHHHHHHHhcCCCCCCchHHHHH
Q 043955 615 LEEAYQFVRSMQIEPTAE--VWCA-----LLGACRVHSNKELGEIVAKKLLELDPGNPGNYVLISN 673 (835)
Q Consensus 615 ~~eA~~~~~~m~~~p~~~--~~~~-----ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 673 (835)
++.|+.+++.+.-+-|.. .-.. ....|-..|.+++|++++++++.-+|.+..--..|.+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 556666666663333321 1222 3356999999999999999999988877665444433
No 317
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=27.47 E-value=5.2e+02 Score=26.55 Aligned_cols=222 Identities=13% Similarity=0.058 Sum_probs=103.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCcCChhh-----hHhHHHHhhcccchhhHHHHHHHHHHh--CCCCchhHHHHHH
Q 043955 432 SMISSYVHNGLANEALELFYLMNEANVESDSIT-----LVSALSAASSLSILKKGKELNGFIIRK--GFNLEGSVASSLV 504 (835)
Q Consensus 432 ~li~~~~~~g~~~~Al~lf~~m~~~g~~p~~~t-----~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li 504 (835)
-++.-|...|++.+|++++.++.+.=-+.|..+ +..-+..+...+++..++..+...... .+.+++.+... +
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~-i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA-L 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH-H
Confidence 467788899999999999888877422333222 122222333444444444444433221 11122222111 1
Q ss_pred HHHHhcCChhhHHHHhhhCCCCChhHHHHHHHHHH-hcCChHHHHHHHHHHHHC---CCCCCH--HHHHHHHHHhcccCc
Q 043955 505 DMYARCGALDIANKVFNCVQTKDLILWTSMINANG-LHGRGKVAIDLFYKMEAE---SFAPDH--ITFLALLYACSHSGL 578 (835)
Q Consensus 505 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~Al~l~~~m~~~---g~~Pd~--~t~~~ll~a~~~~g~ 578 (835)
+.+ -.-.+. ..+++.+|...|-+.... -..|.. +....+|.+......
T Consensus 183 ~~~--------------------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 183 DLQ--------------------------SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHH--------------------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHH--------------------------hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 110 111233 455666666655554321 011221 112233333332222
Q ss_pred HHHHHHHHH-HhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHH---HHHHHHHHhhcCchhHHHH
Q 043955 579 INEGKKFLE-IMRCDYQLDPWPEHYACLVDLLGRANHLEEAYQFVRSM--QIEPTAEV---WCALLGACRVHSNKELGEI 652 (835)
Q Consensus 579 ~~~a~~~~~-~m~~~~~i~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~---~~~ll~a~~~~~~~~~a~~ 652 (835)
.+-..++. .....| ..|....+..++.++ +.|++.+..++++.. .+..|+.. |..|...-+ +.
T Consensus 237 -~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~ 305 (394)
T 3txn_A 237 -DDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQ 305 (394)
T ss_dssp -GGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HH
T ss_pred -HHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HH
Confidence 22222221 111223 456666666666654 567888888888776 35567653 333333322 23
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCC
Q 043955 653 VAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSG 695 (835)
Q Consensus 653 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 695 (835)
+..+++ .|-..-....++....- .-+++++....|-..|
T Consensus 306 ~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 306 NLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTT
T ss_pred HHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 333443 45444344444444322 3566777766676655
No 318
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.44 E-value=2.8e+02 Score=27.77 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=6.5
Q ss_pred HhcCChhhHHHHHH
Q 043955 407 GKCGNIDYSRNVFE 420 (835)
Q Consensus 407 ~k~g~~~~A~~~f~ 420 (835)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34445444444444
No 319
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.34 E-value=2.2e+02 Score=23.91 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhCCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCH
Q 043955 500 ASSLVDMYARCGALDIANKVFNCVQTKD---LILWTSMINANGLHGR--GKVAIDLFYKMEAESFAPDH 563 (835)
Q Consensus 500 ~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~Pd~ 563 (835)
.+.+++-|...|+.++|.+.++++..|. .+...++..++-+.+. .+....++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567888888999999999999987652 2344555555655432 34567777777776654433
No 320
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.16 E-value=1.8e+02 Score=27.45 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=16.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHhh
Q 043955 433 MISSYVHNGLANEALELFYLMNE 455 (835)
Q Consensus 433 li~~~~~~g~~~~Al~lf~~m~~ 455 (835)
-++.+....++++|+++.++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677778888888888777654
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.08 E-value=66 Score=25.56 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=17.2
Q ss_pred ChHhHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 043955 7 SVLDAEQLFDKVSQRTVFTWNAMLGAYVSNGEP 39 (835)
Q Consensus 7 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 39 (835)
..+.|+++++.++++.+.+|..++.++...++.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcH
Confidence 344555555555555555555555555444443
No 322
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.97 E-value=4.1e+02 Score=25.22 Aligned_cols=115 Identities=8% Similarity=-0.039 Sum_probs=50.2
Q ss_pred CChhhhHhHHHHhhcccc--hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhhHHHHhhhCCCCChhHHHHHHHH
Q 043955 460 SDSITLVSALSAASSLSI--LKKGKELNGFIIRKGFNLEGSVASSLVDMYARCGALDIANKVFNCVQTKDLILWTSMINA 537 (835)
Q Consensus 460 p~~~t~~~ll~a~~~~~~--~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~ 537 (835)
++...-...+.+....+. ......+...+.+.--.++..+-...+...++.|+.+....+...+..+|...-...+.+
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 182 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFA 182 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444444444444444431 111223333333333355666666666666666664333333344444554444444444
Q ss_pred HHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 043955 538 NGLHG-RGKVAIDLFYKMEAESFAPDHITFLALLYACSHSG 577 (835)
Q Consensus 538 ~~~~g-~~~~Al~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 577 (835)
+...| ...+++..+.++.. .+|...-...+.++...|
T Consensus 183 L~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTT
T ss_pred HHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhC
Confidence 44444 23445555555443 344443334444444444
No 323
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.76 E-value=4.4e+02 Score=25.06 Aligned_cols=16 Identities=6% Similarity=-0.114 Sum_probs=6.2
Q ss_pred ChhHHHHHHHHHHhcC
Q 043955 527 DLILWTSMINANGLHG 542 (835)
Q Consensus 527 ~~~~~~~li~~~~~~g 542 (835)
|...-...+.+++..|
T Consensus 205 ~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333334444444
No 324
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=24.87 E-value=61 Score=29.60 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=34.5
Q ss_pred ccchhHHHhhhhhhhHHHHHHHhhccCCCCCcEEEE------eccccccCcc
Q 043955 754 NVEEEEKVQMLYGHSERLAIAYGVLKSTEGSLIRIT------KNLRVCVDCH 799 (835)
Q Consensus 754 ~~~~~~k~~~~~~hse~la~~~~~~~~~~~~~~~~~------knlr~c~dch 799 (835)
..|++.|+.+|.--.+-++ .+| +..|.|..|+|+ .|+-||..|-
T Consensus 71 W~Dp~FK~rLL~Dp~aAi~-elG-~~gp~g~~i~VVENTp~vhnlVVCTLCS 120 (216)
T 3hht_A 71 WTDPAFKQRLLEDSETVLR-ELG-YYGLQGEHIRVVENTDTVHNVVVCTLAS 120 (216)
T ss_dssp HHCHHHHHHHHHCHHHHHH-HHT-CCSTTCSSEEEEECBTTEEEEEECTTSC
T ss_pred hcCHHHHHHHHHCHHHHHH-HcC-CCCCCCceEEEEecCCCcEEEEEccccC
Confidence 3577888888877777777 467 567899999998 5689999986
No 325
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.85 E-value=3.2e+02 Score=24.87 Aligned_cols=20 Identities=5% Similarity=-0.071 Sum_probs=13.4
Q ss_pred HHHHHhcCChHHHHHHHhhc
Q 043955 100 VAMYAKCYDFRKARQLFDRM 119 (835)
Q Consensus 100 i~~y~~~g~~~~A~~~f~~m 119 (835)
+...++.|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44556677777777777653
No 326
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.78 E-value=1.9e+02 Score=27.30 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=14.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHH
Q 043955 231 SMLTGFVQNDLYCKAMQFFRELQ 253 (835)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~ 253 (835)
..+..+.+.|+.++|.++|-+.+
T Consensus 96 ~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 96 SGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChhHHHHHHHHHH
Confidence 34455666666666666666554
No 327
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=24.76 E-value=4.1e+02 Score=24.35 Aligned_cols=90 Identities=12% Similarity=0.167 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhc--CCCCCCchHHHHHHHHhcCCchHHHHHHHHHHcCCCccCCceeEEEECCE
Q 043955 633 VWCALLGACRVHSNKELGEIVAKKLLEL--DPGNPGNYVLISNVFAASRKWKDVEQVRMRMRGSGLKKTPGSSWIEIGNK 710 (835)
Q Consensus 633 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~ 710 (835)
+|-.+...| ..++......+++.+... .-.-+..|...+..+...|+|.+|.+|.+.-.+++.+
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~------------- 147 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR------------- 147 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-------------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-------------
Confidence 566666655 234455777777777654 4456777999999999999999999998866665432
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHHHHhHHhCCcccCCc
Q 043955 711 IHSFIARDKSHSESDEIYKKLAEITEKLEREGGYVAQTQ 749 (835)
Q Consensus 711 ~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~y~~~~~ 749 (835)
| .+.+.....+...+| ...+.|.+.+
T Consensus 148 -----------P-~~rL~~~~~~F~~R~-~~~~~~~~~~ 173 (202)
T 3esl_A 148 -----------P-YNRLLRSLSNYEDRL-REMNIVENQN 173 (202)
T ss_dssp -----------S-HHHHHHHHHHHHHHH-HHTTCCCC--
T ss_pred -----------c-HHHHHHHHHHHHHHH-HhcCCCCCCC
Confidence 2 245666777777888 6666643433
No 328
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.99 E-value=2.8e+02 Score=25.96 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=13.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC
Q 043955 133 SAYSASGQCLEALGLFREMQRVGLVT 158 (835)
Q Consensus 133 ~~~~~~g~~~~A~~l~~~m~~~g~~p 158 (835)
...++.|+.+....+++.+...|..+
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 33445566665555555555555443
No 329
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.53 E-value=3e+02 Score=25.28 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=7.2
Q ss_pred HHhcCChHHHHHHHhh
Q 043955 103 YAKCYDFRKARQLFDR 118 (835)
Q Consensus 103 y~~~g~~~~A~~~f~~ 118 (835)
.+..|+.+-+..+++.
T Consensus 84 A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3344554444444443
No 330
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=22.04 E-value=43 Score=17.62 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=13.8
Q ss_pred cCCchHHHHHHHHHHcC
Q 043955 678 SRKWKDVEQVRMRMRGS 694 (835)
Q Consensus 678 ~g~~~~a~~~~~~m~~~ 694 (835)
..+++.|..+|.+|.++
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 35789999999999764
No 331
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.82 E-value=3.6e+02 Score=24.52 Aligned_cols=84 Identities=14% Similarity=0.040 Sum_probs=36.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHhcC
Q 043955 30 LGAYVSNGEPLRVLETYSRMRVLGISVDAFTFPCVIKACAMLKDLDCGAKIHGLVLKCGYDSTDF--IVNSLVAMYAKCY 107 (835)
Q Consensus 30 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g 107 (835)
+...++.|+.+....+++.-...-..++....+.|..+ +..|+.+ +.+.+++.|..++.. ...+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 34445666666666555442221112233333333333 3344443 334444555444321 1122233344556
Q ss_pred ChHHHHHHHhh
Q 043955 108 DFRKARQLFDR 118 (835)
Q Consensus 108 ~~~~A~~~f~~ 118 (835)
+.+-+..+++.
T Consensus 85 ~~~~v~~Ll~~ 95 (231)
T 3aji_A 85 XDEIVKALLVK 95 (231)
T ss_dssp CHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 66555555543
No 332
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.70 E-value=2.5e+02 Score=23.04 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHhcCCchHHHHHHHHHHc
Q 043955 650 GEIVAKKLLELDPGNPGNYVLISNVFAASRKWKDVEQVRMRMRG 693 (835)
Q Consensus 650 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 693 (835)
|+..+++.+.+..+-+. ..-..|++|.+++.+|++
T Consensus 48 GI~eLe~Gl~I~~~~~~---------~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 48 GIGHLLRGISISSKESE---------HTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHSSCCCCTT---------CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCC---------CCChhHHHHHHHHHHHHH
Confidence 45555666666654221 123479999999999996
No 333
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.50 E-value=2.6e+02 Score=21.68 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHHHHhCCChHHH
Q 043955 383 EIHGYIIRKGLSDLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISSYVHNGLANEA 446 (835)
Q Consensus 383 ~i~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 446 (835)
.+...+...|.-+..-...+.. .....+.|+++++.++.+...++..++.++.+.+...-|
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 3455555555433322222211 346788899999999999999999999998887764433
No 334
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.42 E-value=3.5e+02 Score=29.06 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=36.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhcCCCCCeeeHHHHH-------HHHHhCCChhHHHHHHHHHHH
Q 043955 94 FIVNSLVAMYAKCYDFRKARQLFDRMGEKEDVVLWNSII-------SAYSASGQCLEALGLFREMQR 153 (835)
Q Consensus 94 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~n~li-------~~~~~~g~~~~A~~l~~~m~~ 153 (835)
.++|.|+..|...+.++.|..+.++...+.+..+.+-.+ ..+.-.+++.+|.+.|.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456677777777777788887777775521223333333 334456677777776666554
No 335
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.37 E-value=2.1e+02 Score=24.15 Aligned_cols=15 Identities=0% Similarity=-0.181 Sum_probs=6.7
Q ss_pred hccCChhHHHHHHHh
Q 043955 307 AKCCCVNYMGRVFYQ 321 (835)
Q Consensus 307 ~~~g~~~~A~~~f~~ 321 (835)
++.|..+-+..+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344444444444443
No 336
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.70 E-value=1.3e+02 Score=26.28 Aligned_cols=63 Identities=11% Similarity=0.229 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCC---chhHHHHHHHHHhCCC--hHHHHHHHHHHhhcCCcC
Q 043955 398 ILNAIVDVYGKCGNIDYSRNVFESIESKD---VVSWTSMISSYVHNGL--ANEALELFYLMNEANVES 460 (835)
Q Consensus 398 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~Al~lf~~m~~~g~~p 460 (835)
-.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.+. .+....++..+...|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45677888888899999999999887652 2333444455555322 345677787777666433
No 337
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.55 E-value=2.1e+02 Score=26.30 Aligned_cols=59 Identities=8% Similarity=0.206 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHhCCC--chhHHHHHHHHHHhcCChhhHHHHHHhcCCCCchhHHHHHHH
Q 043955 378 MSQTKEIHGYIIRKGLS--DLVILNAIVDVYGKCGNIDYSRNVFESIESKDVVSWTSMISS 436 (835)
Q Consensus 378 ~~~~~~i~~~~~~~~~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~ 436 (835)
......++..+...|+. ....|......+...|++.+|.++|+.-.+.......-|...
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~ 155 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRS 155 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 44666666666666664 234788888888888888888888877665555554444443
Done!