BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043962
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 47.4 bits (111), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVTGLLDPAIIMQTIGKLGVEAE 63
LKVE C C + K L K+ GV+ + + E+G +V G DP ++Q + + G +AE
Sbjct: 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAE 63
Query: 64 LLA 66
+LA
Sbjct: 64 VLA 66
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHID--TEEGLVIVTGLLDPAIIMQTIGKLGVE 61
L++E C AC S + + + K+ GVQ ++ E+ +V G P I+ + + G
Sbjct: 7 LQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYH 66
Query: 62 AELL 65
A +L
Sbjct: 67 ARVL 70
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHID--TEEGLVIVTGLLDPAIIMQTIGKLGVE 61
L++E C AC S + + + K+ GVQ ++ E+ +V G P I+ + + G
Sbjct: 7 LQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYH 66
Query: 62 AELL 65
A +L
Sbjct: 67 ARVL 70
>pdb|1ETP|A Chain A, Crystal Structure Of Cytochrome C4 From Pseudomonas
Stutzeri
pdb|1ETP|B Chain B, Crystal Structure Of Cytochrome C4 From Pseudomonas
Stutzeri
pdb|1M6Z|A Chain A, Crystal Structure Of Reduced Recombinant Cytochrome C4
From Pseudomonas Stutzeri
pdb|1M6Z|B Chain B, Crystal Structure Of Reduced Recombinant Cytochrome C4
From Pseudomonas Stutzeri
pdb|1M6Z|C Chain C, Crystal Structure Of Reduced Recombinant Cytochrome C4
From Pseudomonas Stutzeri
pdb|1M6Z|D Chain D, Crystal Structure Of Reduced Recombinant Cytochrome C4
From Pseudomonas Stutzeri
pdb|1M70|A Chain A, Crystal Structure Of Oxidized Recombinant Cytochrome C4
From Pseudomonas Stutzeri
pdb|1M70|B Chain B, Crystal Structure Of Oxidized Recombinant Cytochrome C4
From Pseudomonas Stutzeri
pdb|1M70|C Chain C, Crystal Structure Of Oxidized Recombinant Cytochrome C4
From Pseudomonas Stutzeri
pdb|1M70|D Chain D, Crystal Structure Of Oxidized Recombinant Cytochrome C4
From Pseudomonas Stutzeri
Length = 190
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 114 AMPNCTSCHHPNYGTRRVLPGFPRPNYVH 142
MP CT CH PN G L GFP+ H
Sbjct: 115 GMPACTGCHAPN-GVGNDLAGFPKLGGQH 142
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHID--TEEGLVIVTGLLDPAIIMQTIGKLGVE 61
L++E C +C S + + + K+ GVQ ++ E+ +V G P I+ + + G
Sbjct: 6 LQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYH 65
Query: 62 AELL 65
A +L
Sbjct: 66 ARVL 69
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHI--DTEEGLVI 41
+KVE C +C S + K+ K+QGVQ I + D +E ++
Sbjct: 13 MKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIV 52
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHI--DTEEGLVI 41
+KVE C +C S + K+ K+QGVQ I + D +E ++
Sbjct: 7 MKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIV 46
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 11 CEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVT 43
C ACP + K L K++GV + + E+ +VT
Sbjct: 14 CAACPITVKKALSKVEGVSKVDVGFEKREAVVT 46
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 1 ICVLKVELQ-CCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIV 42
+C L+ +Q C++C + K L + GVQ + + E+ +V+V
Sbjct: 18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV 60
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 11 CEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVT 43
C ACP + K + K++GV + + E +VT
Sbjct: 14 CSACPITVKKAISKVEGVSKVDVTFETRQAVVT 46
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHIDTEEG---LVIVTGLLDPAIIMQTIGKLGV 60
LK+ C++C + + + L K+ GVQ + +G L IV G P + + LG
Sbjct: 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPG-TSPDALTAAVAGLGY 62
Query: 61 EAEL 64
+A L
Sbjct: 63 KATL 66
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 2 CVLKVELQCCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVT---GLLDPAIIMQTIGKL 58
C L+++ C +C S + + L K GV + + G + ++ P I Q I L
Sbjct: 6 CFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDL 65
Query: 59 GVEAELL 65
G EA ++
Sbjct: 66 GFEAAVM 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,895,158
Number of Sequences: 62578
Number of extensions: 205157
Number of successful extensions: 303
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 16
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)