BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043962
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8ZCA7|COPA_YERPE Copper-exporting P-type ATPase A OS=Yersinia pestis GN=copA PE=3
SV=1
Length = 961
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 36/70 (51%)
Query: 11 CEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVTGLLDPAIIMQTIGKLGVEAELLAYEKD 70
C +C SK+ L ++ GVQ ++ E +VTG + ++ + G AE++ E +
Sbjct: 237 CASCVSKVQNALQRVDGVQVARVNLAERSALVTGTQNNEALIAAVKNAGYGAEIIEDEGE 296
Query: 71 PKKAKKKLDH 80
++ ++++
Sbjct: 297 RRERQQQMSQ 306
>sp|P73241|ATCS_SYNY3 Cation-transporting ATPase PacS OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=pacS PE=1 SV=1
Length = 745
Score = 34.3 bits (77), Expect = 0.59, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHID--TEEGLVIVTGLLDPAIIMQTIGKLGVE 61
L++E C AC S + + + K+ GVQ ++ E+ +V G P I+ + + G
Sbjct: 7 LQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYH 66
Query: 62 AELL 65
A +L
Sbjct: 67 ARVL 70
>sp|Q9SH30|HMA5_ARATH Putative copper-transporting ATPase HMA5 OS=Arabidopsis thaliana
GN=HMA5 PE=2 SV=2
Length = 995
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 1 ICVLKVELQCCEACPSKMNKKLLKIQGVQGIHI--DTEEGLVIVTGLLDPAI-----IMQ 53
+C +++ C +C S + + L + GVQ H+ EE + DP + +++
Sbjct: 130 VCRIRINGMTCTSCSSTIERVLQSVNGVQRAHVALAIEEAEI----HYDPRLSSYDRLLE 185
Query: 54 TIGKLGVEAELLAYEKDPKKAKKKLDHFLKGNS-KDNKRNLEEI 96
I G EA L++ +D K K+D L S K +R+LE +
Sbjct: 186 EIENAGFEAVLISTGEDVSKIDLKIDGELTDESMKVIERSLEAL 229
>sp|P54891|RDRP_ACLSA RNA-directed RNA polymerase OS=Apple chlorotic leaf spot virus
(isolate apple) PE=4 SV=1
Length = 1885
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 60 VEAELLAYEKDPKKAKKKLDHFLKGNSKDNKRNLEEIDDHDHDDRGGYEY-DARYAMPNC 118
+E E L Y + + + H L+G+S+ N LE + D D DD G + D R NC
Sbjct: 1817 LEIEQLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDEDSDDDKGSQIEDRRRGYSNC 1876
>sp|Q64535|ATP7B_RAT Copper-transporting ATPase 2 OS=Rattus norvegicus GN=Atp7b PE=2
SV=1
Length = 1451
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVT---GLLDPAIIMQTIGKLGV 60
L+VE C++C S + K+ K+QGV + + ++T L+ P + I +G
Sbjct: 146 LRVEGMTCQSCVSSIEGKIRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHICDMGF 205
Query: 61 EAELLAYEKDPKKAKKKLDHFLKGNSKDNKRNLEEIDDHDHDDRGGYEYDARYAMP---- 116
EA + + ++ N K + + I + +H + G++ + +P
Sbjct: 206 EAAIKNRTAPLRLGPIDINKLESTNLK--RAAVPPIQNSNHLETPGHQQNHLATLPLRID 263
Query: 117 --NCTSCHHPNYGTRRVLPG 134
+C SC G LPG
Sbjct: 264 GMHCKSCVLNIEGNIGQLPG 283
>sp|P27738|RDRP_ACLSP RNA-directed RNA polymerase OS=Apple chlorotic leaf spot virus
(isolate plum P863) PE=4 SV=1
Length = 1884
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 60 VEAELLAYEKDPKKAKKKLDHFLKGNSKDNKRNLEEIDDHDHD-DRGGYEYDARYAMPNC 118
+E E L Y + + + H L+G+S+ N LE + D D D D+G D R NC
Sbjct: 1816 LEIEQLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDEDGDNDKGSQIEDRRRGYSNC 1875
>sp|Q64430|ATP7A_MOUSE Copper-transporting ATPase 1 OS=Mus musculus GN=Atp7a PE=1 SV=3
Length = 1491
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHI--DTEEGLVIVT-GLLDPAIIMQTIGKLGV 60
+KVE C +C S + K+ K+QGVQ I + D +E ++ L+ I + I +G
Sbjct: 175 MKVEGMTCHSCTSTIEGKVGKLQGVQRIKVSLDNQEATIVFQPHLITAEEIKKQIEAVGF 234
Query: 61 EAELLAYEKDPKKAK 75
A + +K PK K
Sbjct: 235 PAFI---KKQPKYLK 246
>sp|A9KTE6|ADDA_CLOPH ATP-dependent helicase/nuclease subunit A OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=addA PE=3 SV=1
Length = 1377
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 13 ACPSKM---NKKLLKIQGVQGIHIDTEEGLVIVTGLLDPAIIMQTIGKLGVEAELLAYEK 69
+CP+ N L+ IQG+ ++ + E+G+V+V D +G+LG E + Y++
Sbjct: 1289 SCPNSQDYENDDLVLIQGIIDVYFEEEDGIVLVDYKTD------AVGELGEEELIRRYQE 1342
Query: 70 DPKKAKKKLDHFLKGNSKD 88
+ ++ L+ L K+
Sbjct: 1343 QIRYYERALNQLLDKTVKE 1361
>sp|Q64446|ATP7B_MOUSE Copper-transporting ATPase 2 OS=Mus musculus GN=Atp7b PE=1 SV=2
Length = 1462
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVT---GLLDPAIIMQTIGKLGV 60
L+VE C++C S + K+ K+QGV I + ++T L+ P + I +G
Sbjct: 157 LRVEGMTCQSCVSSIEGKIRKLQGVVRIKVSLSNQEAVITYQPYLIQPEDLRDHICDMGF 216
Query: 61 EAEL 64
EA +
Sbjct: 217 EAAI 220
>sp|Q04656|ATP7A_HUMAN Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3
Length = 1500
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHI--DTEEGLVIVTGLLDPAIIMQTIGKLGVE 61
+KVE C +C S + K+ K+QGVQ I + D +E ++ P +I ++ ++ +
Sbjct: 175 MKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIV----YQPHLI--SVEEMKKQ 228
Query: 62 AELLAYEKDPKKAKKKL 78
E + + KK K L
Sbjct: 229 IEAMGFPAFVKKQPKYL 245
>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CCS1 PE=3 SV=1
Length = 234
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 11 CEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVTGLLDPAIIMQTIGKLGVEA 62
CE+C + + L +QG++ + + L+ VTG P+ I++ + +G +A
Sbjct: 13 CESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNIGKDA 64
>sp|Q9XT50|ATP7B_SHEEP Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7B PE=2 SV=1
Length = 1505
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVT---GLLDPAIIMQTIGKLGV 60
L+VE C++C S + K+ K+QGV + + ++T L+ P + I +G
Sbjct: 202 LRVEGMTCQSCVSSIEGKIGKLQGVMRVRVSLSNQEAVITYQPYLIQPQDLRDHITDMGF 261
Query: 61 EA 62
EA
Sbjct: 262 EA 263
>sp|A2AL36|CNTRL_MOUSE Centriolin OS=Mus musculus GN=Cntrl PE=2 SV=2
Length = 2334
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 133 PGFPRPNYVHPINQPVIYNRPPPPPRYVRWTRPPLPYPFSIYEPQGQDVGNAP-HHTFSD 191
P P PN HP+ + PPP + + PP + + P G N P HH +
Sbjct: 1268 PSPPLPNSSHPLTPGTVVYGPPPAGAPIIYGPPPANFAVPLV-PAGVQHCNIPEHHNLEN 1326
Query: 192 E 192
E
Sbjct: 1327 E 1327
>sp|Q6L3Z4|R1B12_SOLDE Putative late blight resistance protein homolog R1B-12 OS=Solanum
demissum GN=R1B-12 PE=3 SV=2
Length = 1348
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 16 SKMNKKLLKIQGVQGIHIDTEEGLVIVTGLLDPAIIMQTIGKL 58
SK +LL + G+Q I +D+ E IV G +D + +GKL
Sbjct: 1300 SKAFDRLLSLPGIQSIAVDSNEKKFIVIGDMDADEVRLVVGKL 1342
>sp|P35670|ATP7B_HUMAN Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4
Length = 1465
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVT---GLLDPAIIMQTIGKLGV 60
L+VE C++C S + K+ K+QGV + + ++T L+ P + + +G
Sbjct: 147 LRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGF 206
Query: 61 EAEL 64
EA +
Sbjct: 207 EAAI 210
>sp|P40457|MLP2_YEAST Protein MLP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MLP2 PE=1 SV=1
Length = 1679
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 63 ELLAYEKDPKKAKKKLDHF--LKGNSKDNKRNLEEIDDH 99
ELL Y+K K K L+ F KG +K+ +R LEE DH
Sbjct: 641 ELLIYKKSQCKKKTTLEDFENFKGLAKEKERMLEEAIDH 679
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVTGLLDP-AIIMQTIGKLGVEA 62
+KV++ C E C K+ + + ++GV + ++ + V V G +DP ++ + + G +
Sbjct: 30 IKVKMDC-EGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGKKV 88
Query: 63 ELLAY 67
EL Y
Sbjct: 89 ELWPY 93
>sp|O77564|FOLH1_PIG Glutamate carboxypeptidase 2 OS=Sus scrofa GN=FOLH1 PE=1 SV=1
Length = 751
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 133 PGFPRPNYVHPINQP--VIYNRP---PPPPRYVRWTRPPLPYPFSIYEPQGQDVGN 183
P RPNY+ I++ I+N PPPP Y +P PFS + PQG G+
Sbjct: 121 PNKTRPNYISIIDEDGNEIFNTSLFEPPPPGYEN-VSDVVP-PFSAFSPQGMPEGD 174
>sp|Q6PWT7|CCS_PIG Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS
PE=2 SV=1
Length = 274
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 2 CVLKVELQ-CCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVTGLLDPAIIMQTIGKLGV 60
C+L+ +Q C++C +++ L + G+Q + + E +V+V L ++ + G
Sbjct: 12 CMLEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLENQMVLVQTTLPSQVVQALLEDTGR 71
Query: 61 EAEL 64
+A L
Sbjct: 72 QAVL 75
>sp|P49015|ATP7A_CRIGR Copper-transporting ATPase 1 (Fragment) OS=Cricetulus griseus
GN=ATP7A PE=2 SV=1
Length = 1476
Score = 31.6 bits (70), Expect = 4.0, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHI--DTEEGLVIVT-GLLDPAIIMQTIGKLGV 60
+KVE C +C S K+ K+QGVQ I + D +E ++ L+ I + I +G
Sbjct: 175 IKVEGMTCHSCTSTTEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEIKKQIEAMGF 234
Query: 61 EAELLAYEKDPKKAK 75
A + +K PK K
Sbjct: 235 PAFV---KKQPKYLK 246
>sp|P70705|ATP7A_RAT Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1
SV=1
Length = 1492
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 4 LKVELQCCEACPSKMNKKLLKIQGVQGIHI--DTEEGLVIVT-GLLDPAIIMQTIGKLGV 60
++VE C +C S + K+ K+QGVQ I + D +E ++ L+ I + I +G
Sbjct: 175 MRVEGMTCHSCTSTIEGKVGKLQGVQRIKVSLDNQEATIVYQPHLITAEEIKKQIEAVGF 234
Query: 61 EAELLAYEKDPKKAK 75
A + +K PK K
Sbjct: 235 PAFI---KKQPKYLK 246
>sp|Q8CN02|COPA_STAES Copper-exporting P-type ATPase A OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=copA PE=3 SV=1
Length = 794
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 1 ICVLKVELQ----CCEACPSKMNKKLLKIQGVQ--GIHIDTEEGLV-IVTGLLDPAIIMQ 53
+ V +VEL C AC +++ K L + QGVQ +++ TE+ L+ + +++
Sbjct: 68 VAVEQVELNINGMTCAACSNRIEKVLNQTQGVQQATVNLTTEQALIKYYPSATNTEALIK 127
Query: 54 TIGKLGVEAELLAYEK-DPKKAKKKLDH 80
I +G +AE K + K++L H
Sbjct: 128 RIQNIGYDAETKTSSKAQSNRKKQELKH 155
>sp|Q5HL56|COPA_STAEQ Copper-exporting P-type ATPase A OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=copA PE=3 SV=1
Length = 794
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 1 ICVLKVELQ----CCEACPSKMNKKLLKIQGVQ--GIHIDTEEGLV-IVTGLLDPAIIMQ 53
+ V +VEL C AC +++ K L + QGVQ +++ TE+ L+ + +++
Sbjct: 68 VAVEQVELNINGMTCAACSNRIEKVLNQTQGVQQATVNLTTEQALIKYYPSATNTEALIK 127
Query: 54 TIGKLGVEAELLAYEK-DPKKAKKKLDH 80
I +G +AE K + K++L H
Sbjct: 128 RIQNIGYDAETKTSSKAQSNRKKQELKH 155
>sp|O32220|COPA_BACSU Copper-exporting P-type ATPase A OS=Bacillus subtilis (strain 168)
GN=copA PE=1 SV=2
Length = 802
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 6 VELQCCEACPSKMNKKLLKIQGVQGIHIDTEEGLVIVTGLLDP-----AIIMQTIGKLGV 60
+E C AC +++ K+L KI+GV ++ L VT +P + + + + KLG
Sbjct: 79 IEGMTCAACANRIEKRLNKIEGVANAPVNF--ALETVTVEYNPKEASVSDLKEAVDKLGY 136
Query: 61 EAELLAYEKDPKKAKKK 77
+ +L + AKKK
Sbjct: 137 KLKLKGEQDSEAAAKKK 153
>sp|Q1QDI6|RL3_PSYCK 50S ribosomal protein L3 OS=Psychrobacter cryohalolentis (strain
K5) GN=rplC PE=3 SV=1
Length = 212
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 15 PSKMNKKLLKIQGVQGIHIDTEEGLVIVTGLL 46
P +M K + +QG++ I +D E GL+++ G +
Sbjct: 165 PGQMGNKRVTVQGLEVISVDVENGLLVIKGAI 196
>sp|A5WCJ0|RL3_PSYWF 50S ribosomal protein L3 OS=Psychrobacter sp. (strain PRwf-1)
GN=rplC PE=3 SV=1
Length = 212
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 15 PSKMNKKLLKIQGVQGIHIDTEEGLVIVTGLL 46
P +M K + +QG++ + +D E+GL+++ G +
Sbjct: 165 PGQMGNKRVTVQGLEVVSVDAEKGLLVIKGAI 196
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 58 LGVEAELLAYEKDPKK-AKKKLDHFLKGNSKDNK--RNLEEIDDHDHDDRGGYEYDAR-- 112
+G E LL K+P+ A K L+ F N ++K +E++ H D G Y R
Sbjct: 29 IGTEHLLLGLMKEPEGIAAKVLESF---NITEDKVIEEVEKLIGHGQDQTGTLHYTPRAK 85
Query: 113 ----YAMPNCTSCHHPNYGTRRVLPGFPRPN 139
+M HH GT +L G R N
Sbjct: 86 KVIELSMDEARKLHHNFVGTEHILLGLIREN 116
>sp|Q7A3E6|COPA_STAAN Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
N315) GN=copA PE=1 SV=1
Length = 802
Score = 30.0 bits (66), Expect = 9.7, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 11 CEACPSKMNKKLLKIQGVQG--IHIDTEEGLV-IVTGLLDPAIIMQTIGKLGVEAELLAY 67
C AC S++ K L K+ GVQ +++ TE+ V D ++ I KLG +A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 68 EKDPKKAK-KKLDHFL 82
KD K + L H L
Sbjct: 143 NKDQTSRKAEALQHKL 158
>sp|Q99R80|COPA_STAAM Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=copA PE=3 SV=1
Length = 802
Score = 30.0 bits (66), Expect = 9.7, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 11 CEACPSKMNKKLLKIQGVQG--IHIDTEEGLV-IVTGLLDPAIIMQTIGKLGVEAELLAY 67
C AC S++ K L K+ GVQ +++ TE+ V D ++ I KLG +A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 68 EKDPKKAK-KKLDHFL 82
KD K + L H L
Sbjct: 143 NKDQTSRKAEALQHKL 158
>sp|A5IVY3|COPA_STAA9 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
JH9) GN=copA PE=3 SV=1
Length = 802
Score = 30.0 bits (66), Expect = 9.7, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 11 CEACPSKMNKKLLKIQGVQG--IHIDTEEGLV-IVTGLLDPAIIMQTIGKLGVEAELLAY 67
C AC S++ K L K+ GVQ +++ TE+ V D ++ I KLG +A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 68 EKDPKKAK-KKLDHFL 82
KD K + L H L
Sbjct: 143 NKDQTSRKAEALQHKL 158
>sp|A6U4T8|COPA_STAA2 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
JH1) GN=copA PE=3 SV=1
Length = 802
Score = 30.0 bits (66), Expect = 9.7, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 11 CEACPSKMNKKLLKIQGVQG--IHIDTEEGLV-IVTGLLDPAIIMQTIGKLGVEAELLAY 67
C AC S++ K L K+ GVQ +++ TE+ V D ++ I KLG +A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 68 EKDPKKAK-KKLDHFL 82
KD K + L H L
Sbjct: 143 NKDQTSRKAEALQHKL 158
>sp|A7X6S1|COPA_STAA1 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
Mu3 / ATCC 700698) GN=copA PE=3 SV=1
Length = 802
Score = 30.0 bits (66), Expect = 9.7, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 11 CEACPSKMNKKLLKIQGVQG--IHIDTEEGLV-IVTGLLDPAIIMQTIGKLGVEAELLAY 67
C AC S++ K L K+ GVQ +++ TE+ V D ++ I KLG +A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 68 EKDPKKAK-KKLDHFL 82
KD K + L H L
Sbjct: 143 NKDQTSRKAEALQHKL 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,648,935
Number of Sequences: 539616
Number of extensions: 4372379
Number of successful extensions: 15258
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 14661
Number of HSP's gapped (non-prelim): 590
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)