BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043963
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|Q Chain Q, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|R Chain R, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|S Chain S, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
MGR K+ + I ++ R +T+ KRK GL KKA E + LC +II+
Sbjct: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|B Chain B, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|C Chain C, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|D Chain D, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
Length = 71
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
GR K+ + I E+ R +T+ KRK GL KKA E + LC +II+
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 47
>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|B Chain B, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|I Chain I, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|J Chain J, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3P57|A Chain A, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|B Chain B, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|C Chain C, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|D Chain D, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|I Chain I, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|J Chain J, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
Length = 90
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
GR K+ + I E+ R +T+ KRK GL KKA E + LC +II+
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 47
>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|B Chain B, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|C Chain C, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|D Chain D, Crystal Structure Of Mef2a Core Bound To Dna
Length = 77
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
GR K+ + I E+ R +T+ KRK GL KKA E + LC +II+
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 47
>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
pdb|1N6J|B Chain B, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
GR K+ + I ++ R +T+ KRK GL KKA E + LC +II+
Sbjct: 1 GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 47
>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 92
Score = 41.2 bits (95), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMII 47
GR K+ ++ ID + R T+ KRK G+ KKA E +TL G +++
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLV 56
>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
pdb|1K6O|C Chain C, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 103
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMII 47
GR K+ ++ ID + R T+ KRK G+ KKA E +TL G +++
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLV 55
>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
pdb|1C7U|B Chain B, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
Length = 85
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
GR K+ + I E+ R +T+ KRK GL KKA E + L +II+
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIF 47
>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|B Chain B, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 100
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 3 RGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMII 47
R K+ +K I+ + R +T+ KRK G+ KKA E + L G +++
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLV 62
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 259 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 310
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 259 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 310
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 259 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 310
>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKAFGNLKNGVN 289
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 231 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 282
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 239 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 290
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 231 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 282
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
Length = 350
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 233 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 284
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
pdb|1J3H|B Chain B, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
Length = 350
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD+ ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 225 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 276
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNF 132
FFAD+ ++YEKIV K F S FSSDL + N
Sbjct: 224 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNL 258
>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
Length = 350
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNF 132
FFAD+ ++YEKIV K F S FSSDL + N
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNL 272
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNF 132
FFAD+ ++YEKIV K F S FSSDL + N
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNL 272
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNID 149
FFAD ++YEKIV K F S FSSDL + N L L N ++
Sbjct: 238 FFADEPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN 289
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNF 132
FFAD+ ++YEKIV K F S FSSDL + N
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNL 272
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNF 132
FFAD+ ++YEKIV K F S FSSDL + N
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNL 272
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNF 132
FFAD+ ++YEKIV K F S FSSDL + N
Sbjct: 238 FFADQPIQIYEKIVS-GKVRFPSHFSSDLKDLLRNL 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,513,508
Number of Sequences: 62578
Number of extensions: 370960
Number of successful extensions: 1142
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 68
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)