Query 043963
Match_columns 315
No_of_seqs 168 out of 1299
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 10:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 7E-31 1.5E-35 233.5 7.3 76 1-83 1-76 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 99.9 1.2E-28 2.6E-33 190.6 2.8 73 2-83 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 99.9 3.2E-27 6.9E-32 185.1 4.7 74 2-83 1-74 (83)
4 smart00432 MADS MADS domain. 99.9 4.4E-26 9.5E-31 167.5 3.8 55 2-56 1-55 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 1.3E-25 2.7E-30 165.1 3.4 55 2-56 1-55 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 2.7E-24 5.9E-29 153.4 -2.0 48 9-56 1-48 (51)
7 KOG0015 Regulator of arginine 99.6 5.7E-17 1.2E-21 151.3 1.5 55 2-56 63-117 (338)
8 COG5068 ARG80 Regulator of arg 99.2 7.8E-12 1.7E-16 121.7 2.1 56 1-56 81-136 (412)
9 PF01486 K-box: K-box region; 98.1 1E-05 2.2E-10 65.3 7.1 63 95-162 14-76 (100)
10 PF06698 DUF1192: Protein of u 81.7 3.4 7.3E-05 30.5 4.6 37 124-160 13-49 (59)
11 PF07106 TBPIP: Tat binding pr 63.9 34 0.00073 29.8 7.4 62 99-162 78-139 (169)
12 PHA03161 hypothetical protein; 57.4 24 0.00053 30.7 5.2 131 26-183 6-136 (150)
13 smart00818 Amelogenin Amelogen 51.5 16 0.00036 32.2 3.2 48 251-307 24-87 (165)
14 PF14282 FlxA: FlxA-like prote 50.3 1E+02 0.0022 25.0 7.6 57 99-162 18-74 (106)
15 PRK04098 sec-independent trans 49.2 14 0.00031 32.5 2.5 31 132-162 81-111 (158)
16 PF03233 Cauli_AT: Aphid trans 48.9 60 0.0013 28.7 6.3 27 133-159 136-162 (163)
17 KOG4603 TBP-1 interacting prot 48.3 51 0.0011 29.6 5.8 37 130-166 114-150 (201)
18 KOG3048 Molecular chaperone Pr 40.3 29 0.00063 30.2 3.0 69 127-199 8-81 (153)
19 PF10584 Proteasome_A_N: Prote 39.8 3.3 7.2E-05 24.9 -2.0 12 44-55 4-15 (23)
20 PF15372 DUF4600: Domain of un 36.9 95 0.0021 26.5 5.5 28 129-156 48-75 (129)
21 PF07439 DUF1515: Protein of u 36.0 88 0.0019 25.9 5.0 27 134-160 42-68 (112)
22 PF07106 TBPIP: Tat binding pr 35.5 1.6E+02 0.0035 25.4 7.1 56 97-158 113-168 (169)
23 PF14257 DUF4349: Domain of un 33.3 3.8E+02 0.0082 24.8 9.6 67 68-146 104-173 (262)
24 PF11944 DUF3461: Protein of u 30.9 57 0.0012 27.6 3.2 25 134-158 101-125 (125)
25 KOG4311 Histidinol dehydrogena 30.0 83 0.0018 30.3 4.5 87 15-103 180-280 (359)
26 PF09278 MerR-DNA-bind: MerR, 29.8 1.2E+02 0.0027 21.5 4.6 22 139-160 36-57 (65)
27 PF05852 DUF848: Gammaherpesvi 29.8 1.8E+02 0.0039 25.3 6.2 33 129-161 83-115 (146)
28 PF08181 DegQ: DegQ (SacQ) fam 29.4 1.3E+02 0.0028 20.7 4.1 26 133-158 5-30 (46)
29 TIGR03007 pepcterm_ChnLen poly 28.5 3E+02 0.0066 27.8 8.7 89 71-160 140-232 (498)
30 COG5256 TEF1 Translation elong 28.0 1.4E+02 0.003 30.5 5.9 73 39-116 107-179 (428)
31 PRK10265 chaperone-modulator p 27.6 69 0.0015 25.7 3.1 15 32-46 10-24 (101)
32 PF11460 DUF3007: Protein of u 27.3 94 0.002 25.5 3.8 18 128-145 86-103 (104)
33 COG3883 Uncharacterized protei 26.0 2.5E+02 0.0054 26.8 6.9 29 134-162 79-107 (265)
34 KOG2264 Exostosin EXT1L [Signa 25.7 1.6E+02 0.0034 31.4 5.9 17 100-116 100-116 (907)
35 PF15079 DUF4546: Domain of un 25.5 2.7E+02 0.0057 25.0 6.5 32 131-162 78-109 (205)
36 PF15188 CCDC-167: Coiled-coil 24.4 2.6E+02 0.0056 22.1 5.7 57 100-160 5-64 (85)
37 PHA03006 hypothetical protein; 23.1 2.1E+02 0.0044 27.5 5.7 39 69-115 134-172 (323)
38 PF15290 Syntaphilin: Golgi-lo 22.5 2.5E+02 0.0053 27.2 6.1 7 76-82 40-46 (305)
39 KOG4252 GTP-binding protein [S 22.2 3.6E+02 0.0079 24.7 6.9 31 38-83 90-120 (246)
40 PRK13677 hypothetical protein; 21.8 1.1E+02 0.0023 25.9 3.2 25 134-158 101-125 (125)
41 PRK10132 hypothetical protein; 21.7 2.7E+02 0.0059 22.8 5.6 56 98-159 10-65 (108)
42 TIGR01478 STEVOR variant surfa 21.6 2.7E+02 0.0058 27.0 6.2 45 7-80 25-69 (295)
43 PF10654 DUF2481: Protein of u 21.6 62 0.0013 27.1 1.8 42 100-141 27-77 (126)
44 COG4575 ElaB Uncharacterized c 21.1 4.7E+02 0.01 21.5 7.2 29 131-159 33-61 (104)
45 smart00787 Spc7 Spc7 kinetocho 21.1 3E+02 0.0066 26.7 6.7 32 127-158 196-227 (312)
46 PF03962 Mnd1: Mnd1 family; I 21.0 4.5E+02 0.0097 23.5 7.4 6 63-68 56-61 (188)
47 PF04120 Iron_permease: Low af 21.0 3.9E+02 0.0085 22.8 6.6 29 128-156 91-119 (132)
48 PF06937 EURL: EURL protein; 20.4 1E+02 0.0022 29.5 3.1 37 127-163 214-250 (285)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.97 E-value=7e-31 Score=233.54 Aligned_cols=76 Identities=33% Similarity=0.558 Sum_probs=70.9
Q ss_pred CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhh
Q 043963 1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRD 80 (315)
Q Consensus 1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~ 80 (315)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|. +||++ .+|++|++||..
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~------~~~~~-~~~~~v~~~~~~ 73 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYE------FGSSD-ESVDAVVDRFLN 73 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccc------cCCcc-hhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999875 58754 459999999998
Q ss_pred ccc
Q 043963 81 KAF 83 (315)
Q Consensus 81 ~~~ 83 (315)
...
T Consensus 74 ~~~ 76 (195)
T KOG0014|consen 74 LTE 76 (195)
T ss_pred hhh
Confidence 766
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=1.2e-28 Score=190.57 Aligned_cols=73 Identities=29% Similarity=0.570 Sum_probs=68.2
Q ss_pred CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhc
Q 043963 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDK 81 (315)
Q Consensus 2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~ 81 (315)
||+||+|++|+|+++|++||+|||.||||||+|||+||||+||||||||+|++|. |+ ++++++||+||++.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~-------f~--s~s~~~vl~ry~~~ 71 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYE-------FS--SPSMEKIIERYQKT 71 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEE-------ec--CCCHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999876 54 46789999999987
Q ss_pred cc
Q 043963 82 AF 83 (315)
Q Consensus 82 ~~ 83 (315)
+.
T Consensus 72 ~~ 73 (77)
T cd00265 72 SG 73 (77)
T ss_pred cc
Confidence 65
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.93 E-value=3.2e-27 Score=185.09 Aligned_cols=74 Identities=35% Similarity=0.658 Sum_probs=68.7
Q ss_pred CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhc
Q 043963 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDK 81 (315)
Q Consensus 2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~ 81 (315)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+ ++||+. . ++.+|++|...
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~------~~~~~~-~-~~~~l~~~~~~ 72 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY------VFWPSS-E-VEGVISRFEVL 72 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcc------eecCcH-H-HHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999999999999865 468754 3 99999999988
Q ss_pred cc
Q 043963 82 AF 83 (315)
Q Consensus 82 ~~ 83 (315)
+.
T Consensus 73 ~~ 74 (83)
T cd00266 73 SA 74 (83)
T ss_pred CH
Confidence 76
No 4
>smart00432 MADS MADS domain.
Probab=99.92 E-value=4.4e-26 Score=167.46 Aligned_cols=55 Identities=35% Similarity=0.655 Sum_probs=53.5
Q ss_pred CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP 56 (315)
Q Consensus 2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~ 56 (315)
||+||+|++|+|+++|++||+|||.||+|||+||||||||+||+|||||+|+++.
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~ 55 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYE 55 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeee
Confidence 8999999999999999999999999999999999999999999999999998764
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.91 E-value=1.3e-25 Score=165.09 Aligned_cols=55 Identities=36% Similarity=0.696 Sum_probs=53.5
Q ss_pred CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP 56 (315)
Q Consensus 2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~ 56 (315)
||+||+|++|+|++.|++||+|||.||+|||+||||||||+||+|||||+|+++.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~ 55 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYE 55 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCccc
Confidence 7999999999999999999999999999999999999999999999999998765
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.87 E-value=2.7e-24 Score=153.36 Aligned_cols=48 Identities=42% Similarity=0.715 Sum_probs=43.4
Q ss_pred eEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963 9 KLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP 56 (315)
Q Consensus 9 k~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~ 56 (315)
|+|+|++.|++||+|||.||||||+|||+||||+||||||||+|++|.
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~ 48 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYT 48 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEE
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEE
Confidence 589999999999999999999999999999999999999999998865
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.63 E-value=5.7e-17 Score=151.30 Aligned_cols=55 Identities=31% Similarity=0.504 Sum_probs=53.7
Q ss_pred CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP 56 (315)
Q Consensus 2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~ 56 (315)
||+||+|++|+|+..|.|||||||.|++|||+|||||+|.+|-|+|.|.+|.+|.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyT 117 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 117 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEE
Confidence 7999999999999999999999999999999999999999999999999999876
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.17 E-value=7.8e-12 Score=121.71 Aligned_cols=56 Identities=27% Similarity=0.447 Sum_probs=54.6
Q ss_pred CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963 1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP 56 (315)
Q Consensus 1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~ 56 (315)
|||+||.|..|+|+.+|.|||+||+.||+|||.||+||.|.+|.|+|.|..|+++.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~t 136 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHT 136 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceee
Confidence 78999999999999999999999999999999999999999999999999999875
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.10 E-value=1e-05 Score=65.26 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043963 95 YDFFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHH 162 (315)
Q Consensus 95 ~~~l~~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~ 162 (315)
.+.+..++.+++.++..|+.. .+++.|++|++|+++||..|+..|+..+..||.|+.++..++
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~-----~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~ 76 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKE-----LRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQ 76 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 344566677777777776644 456889999999999999999999999999999999988765
No 10
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=81.69 E-value=3.4 Score=30.50 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=32.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043963 124 DLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKG 160 (315)
Q Consensus 124 ~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~ 160 (315)
..|++|+.||++||.+-+..|+.-+.+++..+..-..
T Consensus 13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 13 EIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred ccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999887766543
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.94 E-value=34 Score=29.76 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043963 99 ADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHH 162 (315)
Q Consensus 99 ~~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~ 162 (315)
..++..|++++..++.+..... .-+..=...++.+||......|+..+..+.+|+..|+...
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~--~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLE--AELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456666666666655543110 0111223466899999999999999999999999998744
No 12
>PHA03161 hypothetical protein; Provisional
Probab=57.38 E-value=24 Score=30.73 Aligned_cols=131 Identities=4% Similarity=-0.022 Sum_probs=69.3
Q ss_pred cchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhcccccccccccccchhHHHHHHHHH
Q 043963 26 RGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKV 105 (315)
Q Consensus 26 ~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~~~~~~~~kk~~d~~~~l~~~ikKL 105 (315)
+-|++++-|++|==- |||=+|.--|+..+ .|-.--......+.+|.+... .......-.++..+|+..
T Consensus 6 keli~~~lEa~VnKr--~aVS~fDRFG~~s~------lF~~Qf~~t~~~lr~~~~~~~----~~~i~~~v~~l~~~I~~k 73 (150)
T PHA03161 6 KEFLCSAFEAEINKK--ASVSLFDRFGEKNC------IFLHQLDHTKKSLIKHENLKK----QKSIEGMLQAVDLSIQEK 73 (150)
T ss_pred HHHHHHHHHHHHHhh--hhhhHHhhcCCccH------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 457888888887654 34444554443211 000001234555555554433 111112233445555555
Q ss_pred HHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCCCCCCccchhhhcc
Q 043963 106 YEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYNDNNNANNSAQVLFQ 183 (315)
Q Consensus 106 keei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~~~~~~~~~~~~~~~~~q~~~~ 183 (315)
++|+.-|.+-+. =-++.+..|-+.+++....+...++.+...+.. .-....+..+..++++++
T Consensus 74 ~kE~~~L~~fd~--------------kkl~~~E~L~drv~eLkeel~~ELe~l~~~q~~-~~~~~~~~~~~~~dtI~~ 136 (150)
T PHA03161 74 KKELSLLKAFDR--------------HKLSAAEDLQDKILELKEDIHFEIEALNHGQPS-SQEEENSSENSIPDTIMQ 136 (150)
T ss_pred HHHHHHHhhcCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCCCccCchhhHHHH
Confidence 555555543221 127788888899999999999999999876543 111222222355566544
No 13
>smart00818 Amelogenin Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth. They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions w
Probab=51.47 E-value=16 Score=32.17 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=33.7
Q ss_pred cee-eCCchhhhcccccccCCCcccc---------------ccCCcccccccccccCCCCCCCCcccccccch
Q 043963 251 AVY-CDPVGAMIENRVMMNNPRAAMR---------------FVGSTMQQFQPFIEQFPALPSPQFNGFYGDNG 307 (315)
Q Consensus 251 ~~~-~~p~~~~~~n~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (315)
+-| |+|-+||+-+ +-.+++ -....|| |-+.|.+++.+|-.+-|--+|+
T Consensus 24 psYGYEPMGGWLHH------qiiPvsqq~p~~~~l~~~HhiP~l~~~q---P~~PQqP~mp~Pg~h~~~P~~~ 87 (165)
T smart00818 24 PSYGYEPMGGWLHH------QIIPVSQQHPPTHTLQPHHHIPVLPAQQ---PVIPQQPMMPVPGQHSMTPTQH 87 (165)
T ss_pred CCcCccccchhhhc------ccccccccCCCcccccccccCCCccccC---CCCCCCCCCCCCCCCCcCCCCC
Confidence 567 9999999988 555652 1122244 4578999999998887776655
No 14
>PF14282 FlxA: FlxA-like protein
Probab=50.32 E-value=1e+02 Score=24.96 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043963 99 ADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHH 162 (315)
Q Consensus 99 ~~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~ 162 (315)
...++.|++++..|++++.+-. . -.+++.++-..-...|...|..+...|..+..+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~------~-~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELS------Q-DSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------c-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665554211 1 1466888888888888888888888888777554
No 15
>PRK04098 sec-independent translocase; Provisional
Probab=49.24 E-value=14 Score=32.48 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043963 132 FSMHQLKGMLVVLDNNIDVATRKLALIKGHH 162 (315)
Q Consensus 132 LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~ 162 (315)
+++++|..+...+....+.+.+-+..++..-
T Consensus 81 ~~~eel~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (158)
T PRK04098 81 LKFEELDDLKITAENEIKSIQDLLQDYKKSL 111 (158)
T ss_pred cChHHHHHHhhhhhhcchhHHHHHhhhhhcc
Confidence 6789999998888887777777777776554
No 16
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=48.88 E-value=60 Score=28.74 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 133 SMHQLKGMLVVLDNNIDVATRKLALIK 159 (315)
Q Consensus 133 SleEL~~Le~~LE~~Lk~Ir~Rk~~L~ 159 (315)
...++.++...+++.|+.|++.+..+.
T Consensus 136 ~~~~i~e~IKd~de~L~~I~d~iK~Ii 162 (163)
T PF03233_consen 136 TEKLIEELIKDFDERLKEIRDKIKKII 162 (163)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888999999999999999877653
No 17
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=48.31 E-value=51 Score=29.60 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 043963 130 NNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFG 166 (315)
Q Consensus 130 ~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~~~~~ 166 (315)
..|+++|++.-...|..-....++|+..++....+..
T Consensus 114 s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 114 SALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4678999999999999999999999999988664444
No 18
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=40.26 E-value=29 Score=30.17 Aligned_cols=69 Identities=26% Similarity=0.421 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC----cCCCCCCCccchhhhccCCCccc-ccCCCccccc
Q 043963 127 EDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFG----CYNDNNNANNSAQVLFQQPQPLA-SHHVNMQLAS 199 (315)
Q Consensus 127 e~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~~~~~----~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~ 199 (315)
-+|..||+++|..|..++|..+.-+..-+..|++-+..+. +.++....+.-..+|+ |++ |.-||.-+.|
T Consensus 8 idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LV----PLTsSlYVPGkl~d 81 (153)
T KOG3048|consen 8 IDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLV----PLTSSLYVPGKLSD 81 (153)
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEE----ecccceeccceecc
Confidence 4688999999999999999999999988888887664443 2333222222233333 344 5566666655
No 19
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=39.75 E-value=3.3 Score=24.86 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=9.3
Q ss_pred EEEEecCCCCCC
Q 043963 44 CMIIYGPRLNSH 55 (315)
Q Consensus 44 avIVfSp~gK~~ 55 (315)
.+.+|||+|+++
T Consensus 4 ~~t~FSp~Grl~ 15 (23)
T PF10584_consen 4 SITTFSPDGRLF 15 (23)
T ss_dssp STTSBBTTSSBH
T ss_pred CceeECCCCeEE
Confidence 345799999985
No 20
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=36.92 E-value=95 Score=26.48 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 129 FNNFSMHQLKGMLVVLDNNIDVATRKLA 156 (315)
Q Consensus 129 L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~ 156 (315)
.+.|+.+.|..+..+||.-...+...+.
T Consensus 48 ye~Ms~~~l~~llkqLEkeK~~Le~qlk 75 (129)
T PF15372_consen 48 YEQMSVESLNQLLKQLEKEKRSLENQLK 75 (129)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999987666655444
No 21
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=36.05 E-value=88 Score=25.93 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALIKG 160 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L~~ 160 (315)
++||......||.....+++.+...+.
T Consensus 42 lDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 42 LDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 788988888888888888888776653
No 22
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.46 E-value=1.6e+02 Score=25.40 Aligned_cols=56 Identities=5% Similarity=-0.025 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 97 FFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 97 ~l~~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
-+...+..+++++..+..+... ++ ..-...+.+|...+........+..+.|+...
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~--l~----~~~~~vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEK--LR----SGSKPVSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HH----hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666554431 11 12334789999999999999999999998764
No 23
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.30 E-value=3.8e+02 Score=24.76 Aligned_cols=67 Identities=9% Similarity=0.158 Sum_probs=36.4
Q ss_pred chhHHHHHHHhhhcccccccccccccch-hH--HHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHH
Q 043963 68 HKEFMQVVNLYRDKAFTSVHGVKSQNLY-DF--FADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVL 144 (315)
Q Consensus 68 ~~sV~~VIdRY~~~~~~~~~~kk~~d~~-~~--l~~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~L 144 (315)
+..++..++..........+.-...|+. +| ++.+++-++++.++|++-..++. +++|+..++..|
T Consensus 104 ~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~------------~~~d~l~ie~~L 171 (262)
T PF14257_consen 104 ADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK------------TVEDLLEIEREL 171 (262)
T ss_pred HHHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CHHHHHHHHHHH
Confidence 3677888888776543222222334443 33 34556666666666554332211 688888776655
Q ss_pred HH
Q 043963 145 DN 146 (315)
Q Consensus 145 E~ 146 (315)
.+
T Consensus 172 ~~ 173 (262)
T PF14257_consen 172 SR 173 (262)
T ss_pred HH
Confidence 44
No 24
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=30.87 E-value=57 Score=27.56 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
++||..|+..+.+++..|+++++.|
T Consensus 101 L~dL~HLE~Vv~~KIaEIe~dlekL 125 (125)
T PF11944_consen 101 LDDLRHLEKVVNSKIAEIERDLEKL 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999998764
No 25
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=30.04 E-value=83 Score=30.30 Aligned_cols=87 Identities=6% Similarity=-0.042 Sum_probs=49.3
Q ss_pred ccccccccccccchhhh---------hhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCC-----CchhHHHHHHHhhh
Q 043963 15 KARMITYQKRKRGLKKK---------AQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPK-----DHKEFMQVVNLYRD 80 (315)
Q Consensus 15 ~~RqvTFsKRR~GL~KK---------A~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs-----~~~sV~~VIdRY~~ 80 (315)
..|-|-||+.|..|.-| .-.++|=||-|.-+.+.-++|+.|. -.-+.-++ |--+.+.+|.+=+.
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfC--Hl~t~~Cfg~~~~gL~~LEs~l~~Rk~ 257 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFC--HLGTETCFGTSVFGLYSLESILSKRKE 257 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCccc--ccCcceeeeeechhhhhHHHHHHHhhh
Confidence 34556667777756544 4578999999998888889998653 11111222 33456777755444
Q ss_pred cccccccccccccchhHHHHHHH
Q 043963 81 KAFTSVHGVKSQNLYDFFADRNR 103 (315)
Q Consensus 81 ~~~~~~~~kk~~d~~~~l~~~ik 103 (315)
..+.+....+..+-...+..+|+
T Consensus 258 ~aPeeSyTrRLftD~aLL~aKI~ 280 (359)
T KOG4311|consen 258 TAPEESYTRRLFTDDALLCAKIR 280 (359)
T ss_pred cCCchhhHHHhhCChHHHHHHHH
Confidence 43323333333333344444443
No 26
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=29.77 E-value=1.2e+02 Score=21.48 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc
Q 043963 139 GMLVVLDNNIDVATRKLALIKG 160 (315)
Q Consensus 139 ~Le~~LE~~Lk~Ir~Rk~~L~~ 160 (315)
.....++.+++.++++++.|..
T Consensus 36 ~~~~~l~~~~~~i~~~i~~L~~ 57 (65)
T PF09278_consen 36 DRRALLEEKLEEIEEQIAELQA 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3336678888888888887753
No 27
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=29.77 E-value=1.8e+02 Score=25.34 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 043963 129 FNNFSMHQLKGMLVVLDNNIDVATRKLALIKGH 161 (315)
Q Consensus 129 L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~ 161 (315)
++.-.++++..|.+.+++....+...++.+...
T Consensus 83 ~d~~kv~~~E~L~d~v~eLkeel~~el~~l~~~ 115 (146)
T PF05852_consen 83 FDRKKVEDLEKLTDRVEELKEELEFELERLQSA 115 (146)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444468999999999999999999999999754
No 28
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=29.45 E-value=1.3e+02 Score=20.66 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 133 SMHQLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 133 SleEL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
.+|||.+|...||..++...+-+..+
T Consensus 5 ~ieelkqll~rle~eirett~sl~ni 30 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTDSLRNI 30 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888887666655544433
No 29
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=28.50 E-value=3e+02 Score=27.76 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=45.9
Q ss_pred HHHHHHHhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhccc-ccccCCCCCCCHHHHHHHHHHHHH---
Q 043963 71 FMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKFS-SDLDEDFNNFSMHQLKGMLVVLDN--- 146 (315)
Q Consensus 71 V~~VIdRY~~~~~~~~~~kk~~d~~~~l~~~ikKLkeei~kL~k~~~e~~~~-~~wge~L~~LSleEL~~Le~~LE~--- 146 (315)
++.+++.|...... .+........+|+++++.+++++++...++..+-..+ .....+-.+...++|..+...+..
T Consensus 140 ~n~l~~~yi~~~~~-~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 218 (498)
T TIGR03007 140 VQTLLTIFVEETLG-SKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARL 218 (498)
T ss_pred HHHHHHHHHHhhcc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHH
Confidence 34445557765441 1112233457888999999998888876665421111 111122222334555555444433
Q ss_pred HHHHHHHHHHHHHc
Q 043963 147 NIDVATRKLALIKG 160 (315)
Q Consensus 147 ~Lk~Ir~Rk~~L~~ 160 (315)
.+..++.+...+..
T Consensus 219 ~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 219 ELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666666654
No 30
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=27.98 E-value=1.4e+02 Score=30.46 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=47.8
Q ss_pred cCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHh
Q 043963 39 CGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKAN 116 (315)
Q Consensus 39 CdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~~~~~~~~kk~~d~~~~l~~~ikKLkeei~kL~k~~ 116 (315)
.-||+||+|.+....-|+..+ -+-|...-..+|.|++....--..-.| .|.-+|-+++.+.+++++.+|.+..
T Consensus 107 sqAD~aVLVV~a~~~efE~g~----~~~gQtrEH~~La~tlGi~~lIVavNK-MD~v~wde~rf~ei~~~v~~l~k~~ 179 (428)
T COG5256 107 SQADVAVLVVDARDGEFEAGF----GVGGQTREHAFLARTLGIKQLIVAVNK-MDLVSWDEERFEEIVSEVSKLLKMV 179 (428)
T ss_pred hhccEEEEEEECCCCcccccc----ccCCchhHHHHHHHhcCCceEEEEEEc-ccccccCHHHHHHHHHHHHHHHHHc
Confidence 358999999998876554222 123445566788888886542222223 3444577888899999999887654
No 31
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=27.62 E-value=69 Score=25.69 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=12.2
Q ss_pred hhhhhhhcCCCeEEE
Q 043963 32 AQEFATLCGVPTCMI 46 (315)
Q Consensus 32 A~ELSiLCdveVavI 46 (315)
..|||..||++...|
T Consensus 10 ~~Elc~~~gi~~~~l 24 (101)
T PRK10265 10 ITEFCLHTGVSEEEL 24 (101)
T ss_pred HHHHHHHHCcCHHHH
Confidence 478999999987765
No 32
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=27.28 E-value=94 Score=25.53 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 043963 128 DFNNFSMHQLKGMLVVLD 145 (315)
Q Consensus 128 ~L~~LSleEL~~Le~~LE 145 (315)
.++.|+.||++.|...+|
T Consensus 86 Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHhCCHHHHHHHHHHhc
Confidence 467899999999988776
No 33
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.01 E-value=2.5e+02 Score=26.84 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALIKGHH 162 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~ 162 (315)
-.++..|...++.....|++|.+.|...-
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777788888877776543
No 34
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.66 E-value=1.6e+02 Score=31.38 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043963 100 DRNRKVYEKIVKIRKAN 116 (315)
Q Consensus 100 ~~ikKLkeei~kL~k~~ 116 (315)
.+-++|+.+|+++..++
T Consensus 100 ~krqel~seI~~~n~ki 116 (907)
T KOG2264|consen 100 VKRQELNSEIEEINTKI 116 (907)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 34445555555554443
No 35
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=25.48 E-value=2.7e+02 Score=25.03 Aligned_cols=32 Identities=6% Similarity=0.172 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043963 131 NFSMHQLKGMLVVLDNNIDVATRKLALIKGHH 162 (315)
Q Consensus 131 ~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~ 162 (315)
+-+.+-|++|...+.+-.+..++++..|...+
T Consensus 78 DKDFDKL~EFVEIMKeMQkDMDEKMDvLiNiQ 109 (205)
T PF15079_consen 78 DKDFDKLHEFVEIMKEMQKDMDEKMDVLINIQ 109 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhHHhhcc
Confidence 33578899999999999999999999998776
No 36
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.44 E-value=2.6e+02 Score=22.12 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHc
Q 043963 100 DRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDN---NIDVATRKLALIKG 160 (315)
Q Consensus 100 ~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~---~Lk~Ir~Rk~~L~~ 160 (315)
.+|.++++++...+........+ +-+ ..||.++=..++..+.. .+..-.+++..|..
T Consensus 5 ~eId~lEekl~~cr~~le~ve~r-L~~---~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESR-LRR---RELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH-Hcc---cCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45666666666665554422111 222 34555555555444443 33333444444444
No 37
>PHA03006 hypothetical protein; Provisional
Probab=23.05 E-value=2.1e+02 Score=27.50 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=24.1
Q ss_pred hhHHHHHHHhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 043963 69 KEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKA 115 (315)
Q Consensus 69 ~sV~~VIdRY~~~~~~~~~~kk~~d~~~~l~~~ikKLkeei~kL~k~ 115 (315)
+..+.||..|.....+-.... -.+++++|++|+.+|+++
T Consensus 134 ~klknvi~~~~~~~~~i~~~s--------~~krIKlLEeEv~eLKkk 172 (323)
T PHA03006 134 EKLKNVINQFEKKQDPIKDLS--------KTEIIKKLKDENKELKKK 172 (323)
T ss_pred HHHHhhHhhhCCCCCCCCCcc--------HhHHHHHHHHHHHHHHHH
Confidence 456667777765444221111 136788888888888766
No 38
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.54 E-value=2.5e+02 Score=27.21 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=3.4
Q ss_pred HHhhhcc
Q 043963 76 NLYRDKA 82 (315)
Q Consensus 76 dRY~~~~ 82 (315)
.||....
T Consensus 40 ~rY~~C~ 46 (305)
T PF15290_consen 40 GRYMSCG 46 (305)
T ss_pred Cceeecc
Confidence 3555443
No 39
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=22.20 E-value=3.6e+02 Score=24.72 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=22.5
Q ss_pred hcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhccc
Q 043963 38 LCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAF 83 (315)
Q Consensus 38 LCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~~~ 83 (315)
--||.+||+|||.+.+ .+.+.+++=|.+...
T Consensus 90 yrgaqa~vLVFSTTDr---------------~SFea~~~w~~kv~~ 120 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDR---------------YSFEATLEWYNKVQK 120 (246)
T ss_pred hccccceEEEEecccH---------------HHHHHHHHHHHHHHH
Confidence 3589999999998863 345677777766543
No 40
>PRK13677 hypothetical protein; Provisional
Probab=21.76 E-value=1.1e+02 Score=25.85 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
+++|+.|+..+.+++..|++.++.|
T Consensus 101 L~dLrHLE~Vv~~KIaEIe~dLekL 125 (125)
T PRK13677 101 LDDLRHLESVVANKISEIEADLEKL 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999988754
No 41
>PRK10132 hypothetical protein; Provisional
Probab=21.66 E-value=2.7e+02 Score=22.81 Aligned_cols=56 Identities=2% Similarity=-0.008 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 98 FADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIK 159 (315)
Q Consensus 98 l~~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~ 159 (315)
+++.+++|..++..|-....+- + ....+.+-+++..+-..++..|+.++++.....
T Consensus 10 ~~~q~e~L~~Dl~~L~~~le~l-l-----~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~ 65 (108)
T PRK10132 10 VDDGVQDIQNDVNQLADSLESV-L-----KSWGSDAKGEAEAARRKAQALLKETRARMHGRT 65 (108)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-H-----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445555666666554433211 1 112344678889999999999999998877543
No 42
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.60 E-value=2.7e+02 Score=27.00 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=31.5
Q ss_pred ceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhh
Q 043963 7 TLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRD 80 (315)
Q Consensus 7 ~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~ 80 (315)
.+..|.|.+.|..+=++ .||..|.+ +.|. |-.+ |++++|+++|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p~------------Y~nD-pEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNPH------------YHND-PELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCCC------------CCCc-HHHHHHHHHHhH
Confidence 46788888888776332 47877776 5552 2234 899999999865
No 43
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.57 E-value=62 Score=27.14 Aligned_cols=42 Identities=7% Similarity=0.303 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccc---------CCCCCCCHHHHHHHH
Q 043963 100 DRNRKVYEKIVKIRKANFESKFSSDLD---------EDFNNFSMHQLKGML 141 (315)
Q Consensus 100 ~~ikKLkeei~kL~k~~~e~~~~~~wg---------e~L~~LSleEL~~Le 141 (315)
.+.+.|+.|+..|.+++-+.+++.+|. .+.+++++-|+..|-
T Consensus 27 ~~~k~LqkeLn~Lm~~nTEeK~kt~~~kt~~r~v~~K~we~iti~Efi~LR 77 (126)
T PF10654_consen 27 SKRKELQKELNQLMNENTEEKMKTYWTKTFDRIVGNKNWEEITIREFIELR 77 (126)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccHhHhhHHHHHHHH
Confidence 356678888888888877666665663 445666666666553
No 44
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=4.7e+02 Score=21.49 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 131 NFSMHQLKGMLVVLDNNIDVATRKLALIK 159 (315)
Q Consensus 131 ~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~ 159 (315)
+++-+|+..+...++..|+.++.|+....
T Consensus 33 ~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~ 61 (104)
T COG4575 33 SLAGDEAEELRSKAESALKEARDRLGDTG 61 (104)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45789999999999999999999998775
No 45
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.08 E-value=3e+02 Score=26.70 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 127 EDFNNFSMHQLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 127 e~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
+.+++++.++|..+...|......+..+...+
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888877776655554444433
No 46
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.00 E-value=4.5e+02 Score=23.49 Aligned_cols=6 Identities=17% Similarity=0.517 Sum_probs=3.2
Q ss_pred ccCCCc
Q 043963 63 VWPKDH 68 (315)
Q Consensus 63 ~wPs~~ 68 (315)
.|+|++
T Consensus 56 YWsFps 61 (188)
T PF03962_consen 56 YWSFPS 61 (188)
T ss_pred EEecCh
Confidence 466653
No 47
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=21.00 E-value=3.9e+02 Score=22.77 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 128 DFNNFSMHQLKGMLVVLDNNIDVATRKLA 156 (315)
Q Consensus 128 ~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~ 156 (315)
++++++.+||.++...+++.-+..+.+..
T Consensus 91 ~iE~l~~~el~~~~~~~~~~~~~~~~~~~ 119 (132)
T PF04120_consen 91 DIEDLTEEELEEIRKRYERLAEQARERHD 119 (132)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 68899999999999888887666655543
No 48
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=20.36 E-value=1e+02 Score=29.54 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 043963 127 EDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQ 163 (315)
Q Consensus 127 e~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~~ 163 (315)
+.|++|+++||++|-..|...++.|-+.+.....+.+
T Consensus 214 EeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEKD 250 (285)
T PF06937_consen 214 EELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQEKD 250 (285)
T ss_pred HHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999999999998888877777663
Done!