Query 043963
Match_columns 315
No_of_seqs 168 out of 1299
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 17:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 1.8E-32 6.2E-37 215.6 1.2 74 2-84 1-74 (90)
2 1egw_A MADS box transcription 100.0 1.3E-32 4.5E-37 211.1 0.3 73 2-83 1-73 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 4.9E-31 1.7E-35 210.9 -0.8 72 1-81 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 8.5E-31 2.9E-35 206.9 -1.5 71 1-80 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 2.8E-30 9.4E-35 207.7 -1.2 70 1-79 9-78 (103)
6 3he5_A Synzip1; heterodimeric 42.2 71 0.0024 20.9 5.7 41 98-156 8-48 (49)
7 1g6u_A Domain swapped dimer; d 38.2 82 0.0028 20.5 6.9 29 131-159 16-47 (48)
8 1p9i_A Cortexillin I/GCN4 hybr 34.4 48 0.0016 19.8 3.3 26 135-160 2-27 (31)
9 3mq9_A Bone marrow stromal ant 33.0 1.2E+02 0.004 28.9 8.0 25 134-158 445-469 (471)
10 1j1d_C Troponin I, TNI; THIN f 32.9 2E+02 0.0068 23.4 8.7 31 128-158 54-84 (133)
11 2l5g_B Putative uncharacterize 32.4 53 0.0018 21.7 3.6 17 98-114 7-23 (42)
12 3nrf_A APAG protein; structura 31.5 9.5 0.00032 30.2 -0.1 40 11-55 21-60 (106)
13 1m1j_C Fibrinogen gamma chain; 30.5 2.1E+02 0.0071 27.6 9.1 28 134-161 107-134 (409)
14 4fz4_A 0197-18KD, uncharacteri 29.8 2.1E+02 0.0073 23.8 7.8 99 62-160 40-150 (154)
15 1j1e_C Troponin I, TNI; THIN f 29.0 2.1E+02 0.0071 24.5 7.9 27 128-154 54-80 (180)
16 3twe_A Alpha4H; unknown functi 27.0 89 0.0031 18.1 3.5 18 99-116 7-24 (27)
17 2rpa_A Katanin P60 ATPase-cont 26.7 10 0.00034 28.4 -0.8 35 29-83 16-50 (78)
18 3uux_B Mitochondrial division 26.5 2E+02 0.0069 25.8 7.6 29 134-162 200-228 (242)
19 3nmd_A CGMP dependent protein 25.5 1.8E+02 0.0061 21.3 5.9 25 134-158 42-66 (72)
20 3hnw_A Uncharacterized protein 25.3 1.9E+02 0.0066 23.4 6.9 23 136-158 107-129 (138)
21 1ytz_T Troponin T; muscle, THI 24.6 2.5E+02 0.0086 21.9 7.4 31 128-158 38-68 (107)
22 1lwu_C Fibrinogen gamma chain; 24.1 1.3E+02 0.0044 28.1 6.2 27 134-160 28-54 (323)
23 1z56_A Ligase interacting fact 23.9 78 0.0027 28.5 4.4 46 9-54 117-162 (246)
24 2jee_A YIIU; FTSZ, septum, coi 22.7 2.4E+02 0.0083 21.0 7.5 27 134-160 50-76 (81)
25 3tso_C RAB11 family-interactin 22.5 1.6E+02 0.0053 21.8 5.0 23 136-158 36-58 (75)
26 4etp_A Kinesin-like protein KA 21.6 2.2E+02 0.0074 27.1 7.4 53 98-161 8-60 (403)
27 1gmj_A ATPase inhibitor; coile 21.5 2.6E+02 0.009 21.0 7.1 18 143-160 62-79 (84)
28 2xu6_A MDV1 coiled coil; prote 20.1 1.7E+02 0.0059 21.4 4.8 27 134-160 44-70 (72)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.97 E-value=1.8e-32 Score=215.58 Aligned_cols=74 Identities=30% Similarity=0.488 Sum_probs=70.1
Q ss_pred CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhc
Q 043963 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDK 81 (315)
Q Consensus 2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~ 81 (315)
||+||+|++|+|+++|+|||+|||+||||||+|||||||||||||||||+|++|+ |++ ++++.||+||...
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-------f~s--~~~~~il~rY~~~ 71 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-------YAS--TDMDKVLLKYTEY 71 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-------EES--SCHHHHHHHHHHC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-------eCC--CCHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999876 765 7899999999998
Q ss_pred ccc
Q 043963 82 AFT 84 (315)
Q Consensus 82 ~~~ 84 (315)
+..
T Consensus 72 ~~~ 74 (90)
T 3p57_A 72 NEP 74 (90)
T ss_dssp CSC
T ss_pred Ccc
Confidence 763
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.97 E-value=1.3e-32 Score=211.07 Aligned_cols=73 Identities=30% Similarity=0.494 Sum_probs=67.7
Q ss_pred CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhc
Q 043963 2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDK 81 (315)
Q Consensus 2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~ 81 (315)
||+||+|++|+|+++|+|||+|||+||||||+|||||||||||||||||+||+|+ |++ ++++.||+||...
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-------~~s--~~~~~il~ry~~~ 71 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-------YAS--TDMDKVLLKYTEY 71 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-------EES--SCHHHHHHHHHHC
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-------CCC--CCHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999876 754 6899999999987
Q ss_pred cc
Q 043963 82 AF 83 (315)
Q Consensus 82 ~~ 83 (315)
..
T Consensus 72 ~~ 73 (77)
T 1egw_A 72 NE 73 (77)
T ss_dssp --
T ss_pred cC
Confidence 65
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.96 E-value=4.9e-31 Score=210.90 Aligned_cols=72 Identities=25% Similarity=0.426 Sum_probs=67.3
Q ss_pred CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhh
Q 043963 1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRD 80 (315)
Q Consensus 1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~ 80 (315)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+||+|+ |+ +++++.||+||..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-------f~--sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-------FS--TPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-------EE--CTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-------ec--CCCHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999876 64 4689999999865
Q ss_pred c
Q 043963 81 K 81 (315)
Q Consensus 81 ~ 81 (315)
.
T Consensus 87 ~ 87 (100)
T 1mnm_A 87 R 87 (100)
T ss_dssp H
T ss_pred C
Confidence 4
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.95 E-value=8.5e-31 Score=206.86 Aligned_cols=71 Identities=25% Similarity=0.425 Sum_probs=66.3
Q ss_pred CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhh
Q 043963 1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRD 80 (315)
Q Consensus 1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~ 80 (315)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+ |+ +++++.||++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-------f~--s~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------FA--TRKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-------EE--CGGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-------ec--CCCHHHHHhhhcc
Confidence 89999999999999999999999999999999999999999999999999999876 65 4789999997644
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.95 E-value=2.8e-30 Score=207.71 Aligned_cols=70 Identities=26% Similarity=0.430 Sum_probs=65.6
Q ss_pred CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhh
Q 043963 1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYR 79 (315)
Q Consensus 1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~ 79 (315)
|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+ |+ +++++.||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-------f~--s~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------FA--TRKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-------EE--CGGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-------ec--CccHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999876 64 478999998753
No 6
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.20 E-value=71 Score=20.95 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 98 FADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLA 156 (315)
Q Consensus 98 l~~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~ 156 (315)
++.+...|+.+.+-|++++... ..|+..|+..+..+|.+++
T Consensus 8 lenevaslenenetlkkknlhk------------------kdliaylekeianlrkkie 48 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHK------------------KDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccHHHHHhcccH------------------HHHHHHHHHHHHHHHHHhc
Confidence 4445555666666665554321 2456667777777777664
No 7
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.16 E-value=82 Score=20.55 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 043963 131 NFSMHQLKGMLVV---LDNNIDVATRKLALIK 159 (315)
Q Consensus 131 ~LSleEL~~Le~~---LE~~Lk~Ir~Rk~~L~ 159 (315)
+.|.+||-.|+.. ||.++..++.++..|+
T Consensus 16 gfspeelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678888877654 4445555555555443
No 8
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=34.43 E-value=48 Score=19.82 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043963 135 HQLKGMLVVLDNNIDVATRKLALIKG 160 (315)
Q Consensus 135 eEL~~Le~~LE~~Lk~Ir~Rk~~L~~ 160 (315)
++|..|...||..-+.++.+.+.|..
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888877777777777653
No 9
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.98 E-value=1.2e+02 Score=28.85 Aligned_cols=25 Identities=16% Similarity=0.430 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
++||..-...|+.+|+..+..++.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444555555555555444
No 10
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=32.88 E-value=2e+02 Score=23.42 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 128 DFNNFSMHQLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 128 ~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
+++++|.++|+++-..|-..+..+.+-+.-+
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5899999999999888877666665554433
No 11
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.44 E-value=53 Score=21.66 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043963 98 FADRNRKVYEKIVKIRK 114 (315)
Q Consensus 98 l~~~ikKLkeei~kL~k 114 (315)
|-+.+.|+..||++.++
T Consensus 7 l~qkI~kVdrEI~Kte~ 23 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQ 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555555555543
No 12
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=31.48 E-value=9.5 Score=30.22 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=32.8
Q ss_pred ccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCC
Q 043963 11 IDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSH 55 (315)
Q Consensus 11 Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~ 55 (315)
|.++.....||.=.-..|-+|.-+|+.+| ++.|+|.|+-|
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef 60 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSF 60 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEE
Confidence 45556667788888889999999999887 99999999854
No 13
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.50 E-value=2.1e+02 Score=27.58 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALIKGH 161 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L~~~ 161 (315)
+.+|+.....++.++..++..+..|...
T Consensus 107 i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 107 IQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4555555556666777777777777653
No 14
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=29.75 E-value=2.1e+02 Score=23.83 Aligned_cols=99 Identities=10% Similarity=0.124 Sum_probs=61.7
Q ss_pred cccCCCchhHHHHHHHhhhcccccccccccc-cchhH-HHHHHHHHHHHHHHHHHHhh---------hhcccccccCCCC
Q 043963 62 EVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQ-NLYDF-FADRNRKVYEKIVKIRKANF---------ESKFSSDLDEDFN 130 (315)
Q Consensus 62 ~~wPs~~~sV~~VIdRY~~~~~~~~~~kk~~-d~~~~-l~~~ikKLkeei~kL~k~~~---------e~~~~~~wge~L~ 130 (315)
..|-.+..-..+-+++|...-..+...++.. ++-+| ...+++.+..+.+-.+++-. +..+...|+....
T Consensus 40 ~lWee~~~i~~~~m~~~~~lk~d~~~~kk~~~dL~dFg~h~k~E~~tRqVa~YrkKYp~n~eIe~eyk~~l~qt~~~~Ya 119 (154)
T 4fz4_A 40 ALWEEFLRIGKDNMDYASKMKADDKFFHKVKGDLNDFKYQIKVENYIRQVAELRKKYPGDNTIEEEYNAHLKQDEGKSIA 119 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHTCCCSSSSTT
T ss_pred HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhccccCcc
Confidence 4676655666677888887665333333332 34444 23455666666555555421 1123357888888
Q ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHHHHHHc
Q 043963 131 NFSMHQLKGMLV-VLDNNIDVATRKLALIKG 160 (315)
Q Consensus 131 ~LSleEL~~Le~-~LE~~Lk~Ir~Rk~~L~~ 160 (315)
++....|..-.. ........|..+.+.|..
T Consensus 120 SqEG~~l~~y~~~e~~~afnKI~~iV~eLe~ 150 (154)
T 4fz4_A 120 SQEGATLRDYVDREASEAMGRIKQRVAELEI 150 (154)
T ss_dssp SCCHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888887776 777778888888877753
No 15
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=28.97 E-value=2.1e+02 Score=24.54 Aligned_cols=27 Identities=11% Similarity=0.318 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043963 128 DFNNFSMHQLKGMLVVLDNNIDVATRK 154 (315)
Q Consensus 128 ~L~~LSleEL~~Le~~LE~~Lk~Ir~R 154 (315)
+|++||.++|+++...|...+..+.+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeE 80 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEE 80 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999998887776655444433
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.95 E-value=89 Score=18.10 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043963 99 ADRNRKVYEKIVKIRKAN 116 (315)
Q Consensus 99 ~~~ikKLkeei~kL~k~~ 116 (315)
-.+++.|++.+.+|+++.
T Consensus 7 ykeledlqerlrklrkkl 24 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345556666666666554
No 17
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.65 E-value=10 Score=28.41 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=27.5
Q ss_pred hhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhccc
Q 043963 29 KKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAF 83 (315)
Q Consensus 29 ~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~~~ 83 (315)
.|+|.|.+.|++=|.|++.|. ++..-|+||...-.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~--------------------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ--------------------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH--------------------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH--------------------HHHHHHHHHHHhcC
Confidence 589999999999888876554 45778888887654
No 18
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=26.52 E-value=2e+02 Score=25.79 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALIKGHH 162 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~ 162 (315)
+.-|++-+..||.-|..|+.|++.++...
T Consensus 200 LA~lEqdEl~LE~eL~~V~~Rief~qEy~ 228 (242)
T 3uux_B 200 IANIEQNQLLLEDNLKQIDDRLDFLEEYG 228 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777788899999999999999998765
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.52 E-value=1.8e+02 Score=21.27 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
+++|.......+..++.++..+.++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555554
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.35 E-value=1.9e+02 Score=23.41 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043963 136 QLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 136 EL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
++..-...|.+.+.....++..|
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444
No 21
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=24.62 E-value=2.5e+02 Score=21.90 Aligned_cols=31 Identities=6% Similarity=-0.014 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043963 128 DFNNFSMHQLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 128 ~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
++++|+.++|+++...|...+..+.+-+--|
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7899999999999988888777776655444
No 22
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.11 E-value=1.3e+02 Score=28.13 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALIKG 160 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L~~ 160 (315)
+..|+.....++.+|..+..++..|..
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 23
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=23.88 E-value=78 Score=28.48 Aligned_cols=46 Identities=4% Similarity=-0.023 Sum_probs=1.7
Q ss_pred eEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCC
Q 043963 9 KLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNS 54 (315)
Q Consensus 9 k~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~ 54 (315)
..|+....-.+|+.||-.|+..|..+|..-=+-+=++=.|--+.++
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L 162 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKL 162 (246)
T ss_dssp ------------------------------------------CTTS
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHH
Confidence 4455566668999999999999988886544444444455544443
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.65 E-value=2.4e+02 Score=21.01 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALIKG 160 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L~~ 160 (315)
.+.|..=...|..-.....+|+..|.+
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777888888887765
No 25
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=22.50 E-value=1.6e+02 Score=21.79 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043963 136 QLKGMLVVLDNNIDVATRKLALI 158 (315)
Q Consensus 136 EL~~Le~~LE~~Lk~Ir~Rk~~L 158 (315)
.+++|++.|+..|-+|.+.--.+
T Consensus 36 ~v~eLEdYID~LLvRVME~~P~i 58 (75)
T 3tso_C 36 HIRELEDYIDNLLVRVMEETPSI 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCcHH
Confidence 34556666666666665544333
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.65 E-value=2.2e+02 Score=27.13 Aligned_cols=53 Identities=15% Similarity=0.314 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 043963 98 FADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGH 161 (315)
Q Consensus 98 l~~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~ 161 (315)
++++++.++++..++.+.+.+.... +++|.+....-+...+.+..++..+++.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELG-----------MKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455666666666665554432211 4555555555555666677777777764
No 27
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.53 E-value=2.6e+02 Score=20.99 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 043963 143 VLDNNIDVATRKLALIKG 160 (315)
Q Consensus 143 ~LE~~Lk~Ir~Rk~~L~~ 160 (315)
.|++.+...+.+|..|+.
T Consensus 62 ~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 62 RLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 333444555555555543
No 28
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=20.08 E-value=1.7e+02 Score=21.39 Aligned_cols=27 Identities=11% Similarity=0.372 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043963 134 MHQLKGMLVVLDNNIDVATRKLALIKG 160 (315)
Q Consensus 134 leEL~~Le~~LE~~Lk~Ir~Rk~~L~~ 160 (315)
+..|.+=+..||..|..|+.|++.+..
T Consensus 44 lA~lEqdE~~LE~~l~~i~~rle~~qe 70 (72)
T 2xu6_A 44 IANIEQNQLMLEDNLKQIDDRLDFLEE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 566777778899999999999887654
Done!