BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043964
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 26 KLVKGVEQEVEKLTSHLQTIQAVLNDAEQRQVKEKSIRVWLGRLKDVSYDIENVLDEWIT 85
KLV+G + KL HL +I A + + +V E+ W RL V ++LD WI
Sbjct: 190 KLVRGWDDLFNKLAEHLNSISA-MKMSPYYKVFEEEANHWDDRLNKV----RSLLDVWID 244
Query: 86 ARRRLQMEQNAHSAQKQVSSCFPASSISFKKI 117
+RR + S ++ PA S FK I
Sbjct: 245 VQRRWVYLEGIFSGSGDINQLLPAESTRFKSI 276
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 26 KLVKGVEQEVEKLTSHLQTIQAVLNDAEQRQVKEKSIRVWLGRLKDVSYDIENVLDEWIT 85
KLV+G + KL HL +I A + + +V E+ W RL V ++LD WI
Sbjct: 190 KLVRGWDDLFNKLAEHLNSISA-MKMSPYYKVFEEEANHWDDRLNKV----RSLLDVWID 244
Query: 86 ARRRLQMEQNAHSAQKQVSSCFPASSISFKKI 117
+RR + S ++ PA S FK I
Sbjct: 245 VQRRWVYLEGIFSGSGDINQLLPAESTRFKSI 276
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 4 AVVSPLLEQLISFSTEEVTQQVKLVKGVEQEVEKLTSHLQTIQAVL---NDAEQRQVKEK 60
A +S L+ +L TEE KL KGV++ +E L L++ A L + + Q+ +
Sbjct: 1 AAISNLIPKLGELLTEEF----KLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56
Query: 61 SIRVWLGRLKDVSYDIENVLDEWITARRRLQMEQN 95
++W ++++SY IE+V+D+++ ++ + N
Sbjct: 57 D-KLWADEVRELSYVIEDVVDKFLVQVDGIKSDDN 90
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 40/134 (29%)
Query: 403 MRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI-EKLIH 461
++ L++G N L G + +F+ LT L VL++G ++ +P + ++L+H
Sbjct: 66 LKELYLGSNQL------GALPVGVFDSLTQLTVLDLGTNQLT------VLPSAVFDRLVH 113
Query: 462 LKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSL 521
LK L + C L ELP GI +L ++ HL ++ + L
Sbjct: 114 LKELFMCCNK-------------------------LTELPRGIERLTHLTHLALDQ-NQL 147
Query: 522 GRMPAG-IARLTSL 534
+P G RL+SL
Sbjct: 148 KSIPHGAFDRLSSL 161
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKL 459
V M S F+G L++ LK++ E L + N+ IS + + L
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 460 IHLKYLNLSCLTSIRK--LPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNER 517
L+ L ++ S ++ LP+ EL NL LD+S C + P L +++ +LN
Sbjct: 445 SSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMA 502
Query: 518 TDSLGRMPAGI-ARLTSLR 535
++ L +P GI RLTSL+
Sbjct: 503 SNQLKSVPDGIFDRLTSLQ 521
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 20/102 (19%)
Query: 412 MLDN-SSLNGKM--LKELFEKLTSLRVLNIGKWSISRWYFIL-----EIPRN-------- 455
+LDN S+ GK+ L + FE+L L +N+G SIS + E+ N
Sbjct: 28 VLDNCKSIEGKIEGLTDEFEELEFLSTINVGLTSISNLPKLNKLKKLELSENRISGDLEV 87
Query: 456 -IEKLIHLKYLNLSCLTSIRKLP--EPLCELYNLEKLDISHC 494
EK +LK+LNLS I+ L EPL +L NL+ LD+ +C
Sbjct: 88 LAEKCPNLKHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNC 128
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 22/118 (18%)
Query: 412 MLDNSSLN-GKM--LKELFEKLTSLRVLNIGKWSISRWYFIL-----EIPRN-------- 455
+LDNS N GK+ L + FE+L L +N+G SI+ + E+ N
Sbjct: 23 VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEV 82
Query: 456 -IEKLIHLKYLNLSCLTSIRKLP--EPLCELYNLEKLDISHC--WYLKELPEGIGKLI 508
EK +L +LNLS I+ L EPL +L NL+ LD+ +C L + E + KL+
Sbjct: 83 LAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 25/157 (15%)
Query: 452 IPRNIEKLIHLKYLNLSCLTSIRKLPEPLCE---------LYNLEKLDISHCWY-LKELP 501
+P +I L L+ L++ + +LPEPL L NL+ L + W ++ LP
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE--WTGIRSLP 199
Query: 502 EGIGKLINMKHL--LNERTDSLGRMPAGIARL--------TSLRTFDEFHVSRGKAVDG- 550
I L N+K L N +LG + +L T+LR + R
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 551 HKGCNNV--FPNWMMSLTNPRSLELILCENCNQLPPL 585
K C+N+ P + LT L+L C N ++LP L
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 421 KMLKELFEKLTSLRVLNIGKWSISRW-YFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEP 479
K + +L +L L +W++ W +FI +P +++ H + +NL +
Sbjct: 473 KQINQLVTDELTLEQLPTAQWTLHEWLHFINNLPVDLD---HQRMVNL----------DK 519
Query: 480 LCELYNLEKLDISHCWYL 497
+L N +I+H WYL
Sbjct: 520 AFDLTNSSNAEIAHAWYL 537
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 449 ILEIPRNIEKLIHLK--YLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGK 506
I I NI K L YLN + LT +LP + L NL LD+SH L LP +G
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSHN-RLTSLPAELGS 291
Query: 507 LINMKHL 513
+K+
Sbjct: 292 CFQLKYF 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,084,289
Number of Sequences: 62578
Number of extensions: 810579
Number of successful extensions: 2153
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2120
Number of HSP's gapped (non-prelim): 41
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)