Query 043964
Match_columns 713
No_of_seqs 397 out of 3689
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-68 3.8E-73 603.7 31.5 647 2-691 1-844 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.9E-46 1.5E-50 443.6 29.7 522 125-692 134-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.8 1E-21 2.2E-26 201.9 7.4 128 174-306 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.5E-20 3.2E-25 225.9 14.4 279 379-687 70-367 (968)
5 PLN00113 leucine-rich repeat r 99.8 2.1E-20 4.7E-25 224.5 12.5 279 378-687 118-415 (968)
6 PLN03210 Resistant to P. syrin 99.8 3.9E-19 8.4E-24 213.8 17.9 291 376-690 587-944 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 1.2E-21 2.7E-26 201.6 -5.0 289 377-691 54-377 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 1.7E-18 3.6E-23 178.8 -1.9 274 380-683 105-394 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 2.3E-18 4.9E-23 169.4 -4.4 276 377-686 182-539 (565)
10 KOG0472 Leucine-rich repeat pr 99.6 1.6E-18 3.6E-23 170.4 -7.9 260 382-687 49-308 (565)
11 KOG4194 Membrane glycoprotein 99.6 2.2E-16 4.8E-21 162.4 0.5 226 427-683 193-424 (873)
12 KOG0617 Ras suppressor protein 99.5 8E-17 1.7E-21 140.6 -6.8 165 396-587 28-194 (264)
13 KOG4194 Membrane glycoprotein 99.5 2.2E-14 4.8E-19 147.9 8.3 243 400-683 77-325 (873)
14 KOG0618 Serine/threonine phosp 99.5 8.7E-16 1.9E-20 166.5 -3.5 201 485-705 242-480 (1081)
15 PRK15370 E3 ubiquitin-protein 99.5 6.8E-14 1.5E-18 157.7 11.3 240 382-686 182-426 (754)
16 PRK15387 E3 ubiquitin-protein 99.4 1E-12 2.2E-17 147.4 14.6 236 377-687 221-456 (788)
17 KOG0618 Serine/threonine phosp 99.4 9.9E-15 2.1E-19 158.4 -4.4 261 400-687 44-442 (1081)
18 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.6E-19 127.1 -3.6 151 428-598 30-182 (264)
19 PRK15370 E3 ubiquitin-protein 99.3 2.8E-12 6E-17 144.8 9.9 229 377-663 198-427 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.3 8.4E-13 1.8E-17 151.3 2.7 132 399-543 521-653 (889)
21 PRK15387 E3 ubiquitin-protein 99.2 4.4E-11 9.5E-16 134.4 10.6 222 377-668 241-462 (788)
22 cd00116 LRR_RI Leucine-rich re 99.0 8.4E-12 1.8E-16 130.4 -4.6 117 399-518 21-147 (319)
23 KOG4237 Extracellular matrix p 99.0 3.3E-11 7.1E-16 119.5 -0.6 128 402-543 68-199 (498)
24 cd00116 LRR_RI Leucine-rich re 99.0 6.4E-11 1.4E-15 123.7 -1.2 249 425-687 17-289 (319)
25 KOG0532 Leucine-rich repeat (L 98.8 1.5E-10 3.2E-15 120.0 -4.3 186 384-599 81-270 (722)
26 KOG0532 Leucine-rich repeat (L 98.8 1.2E-10 2.6E-15 120.7 -5.6 132 394-543 114-245 (722)
27 PF14580 LRR_9: Leucine-rich r 98.8 2.5E-09 5.4E-14 98.6 2.1 82 427-518 15-98 (175)
28 KOG4341 F-box protein containi 98.8 4E-10 8.6E-15 112.9 -3.6 304 379-712 139-457 (483)
29 KOG4237 Extracellular matrix p 98.7 2.5E-09 5.5E-14 106.3 1.0 144 362-519 51-199 (498)
30 COG4886 Leucine-rich repeat (L 98.7 1.9E-08 4.2E-13 108.3 5.7 158 431-598 116-286 (394)
31 KOG1259 Nischarin, modulator o 98.7 2.3E-09 5.1E-14 102.6 -1.7 102 482-598 282-383 (490)
32 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.6E-13 103.0 2.2 87 427-518 142-232 (505)
33 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.6E-13 103.0 2.0 202 377-597 120-334 (505)
34 COG4886 Leucine-rich repeat (L 98.6 4.2E-08 9E-13 105.7 5.8 193 434-663 96-289 (394)
35 PF14580 LRR_9: Leucine-rich r 98.6 2.9E-08 6.2E-13 91.6 2.6 131 398-545 16-153 (175)
36 KOG1259 Nischarin, modulator o 98.6 7.8E-09 1.7E-13 99.1 -1.2 129 456-600 280-410 (490)
37 PLN03150 hypothetical protein; 98.4 4.8E-07 1E-11 102.2 6.5 112 462-583 420-532 (623)
38 KOG2982 Uncharacterized conser 98.3 1.3E-07 2.9E-12 90.8 0.4 104 405-518 49-156 (418)
39 KOG2120 SCF ubiquitin ligase, 98.2 2.5E-08 5.3E-13 95.8 -6.0 84 432-519 186-271 (419)
40 PLN03150 hypothetical protein; 98.2 1.8E-06 3.9E-11 97.6 7.3 89 486-584 420-508 (623)
41 KOG4341 F-box protein containi 98.2 7.1E-08 1.5E-12 97.0 -4.1 265 401-693 138-418 (483)
42 PF13855 LRR_8: Leucine rich r 98.1 2E-06 4.3E-11 64.9 3.4 56 461-518 2-59 (61)
43 KOG1909 Ran GTPase-activating 98.1 2.4E-07 5.2E-12 91.3 -2.4 249 397-662 26-309 (382)
44 PF13855 LRR_8: Leucine rich r 98.1 2.8E-06 6E-11 64.1 3.5 58 431-495 1-60 (61)
45 PRK15386 type III secretion pr 98.1 5.6E-06 1.2E-10 85.9 6.7 136 427-598 48-186 (426)
46 KOG2120 SCF ubiquitin ligase, 98.0 1E-07 2.2E-12 91.7 -7.2 179 461-661 186-373 (419)
47 PRK15386 type III secretion pr 98.0 1.9E-05 4.1E-10 82.0 8.1 137 456-629 48-187 (426)
48 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.5E-10 55.6 2.9 38 461-500 2-39 (44)
49 KOG0531 Protein phosphatase 1, 97.8 4.5E-06 9.8E-11 90.1 0.2 81 428-518 92-172 (414)
50 PRK09376 rho transcription ter 97.8 1.7E-05 3.6E-10 81.5 4.2 42 196-238 169-210 (416)
51 KOG1859 Leucine-rich repeat pr 97.7 1.4E-06 3E-11 93.5 -5.2 108 424-543 180-290 (1096)
52 KOG3665 ZYG-1-like serine/thre 97.7 2.2E-05 4.7E-10 88.7 3.1 129 377-519 121-261 (699)
53 PF12799 LRR_4: Leucine Rich r 97.7 3E-05 6.5E-10 53.6 2.5 41 431-478 1-41 (44)
54 cd01128 rho_factor Transcripti 97.6 4.5E-05 9.6E-10 75.2 3.7 42 195-237 15-56 (249)
55 KOG3665 ZYG-1-like serine/thre 97.5 9.9E-05 2.1E-09 83.4 5.7 135 400-545 121-263 (699)
56 KOG1859 Leucine-rich repeat pr 97.5 4.4E-06 9.6E-11 89.8 -5.0 125 378-519 164-290 (1096)
57 KOG0531 Protein phosphatase 1, 97.5 3.7E-05 7.9E-10 83.1 1.4 107 396-519 90-197 (414)
58 PF13191 AAA_16: AAA ATPase do 97.5 0.00012 2.7E-09 69.4 4.5 48 170-220 1-48 (185)
59 KOG4579 Leucine-rich repeat (L 97.3 1.5E-05 3.3E-10 68.1 -3.2 77 459-538 52-129 (177)
60 PRK11331 5-methylcytosine-spec 97.2 0.00031 6.6E-09 74.1 3.9 67 169-243 175-241 (459)
61 PRK08118 topology modulation p 97.2 0.00013 2.8E-09 67.7 0.7 34 198-231 3-37 (167)
62 PTZ00202 tuzin; Provisional 97.1 0.0038 8.2E-08 65.0 11.1 50 166-218 259-308 (550)
63 PRK00411 cdc6 cell division co 97.1 0.00066 1.4E-08 73.1 5.3 52 167-220 28-79 (394)
64 TIGR02928 orc1/cdc6 family rep 97.0 0.00068 1.5E-08 72.2 5.0 50 168-219 14-63 (365)
65 KOG4579 Leucine-rich repeat (L 97.0 0.00013 2.8E-09 62.6 -0.6 90 400-503 52-141 (177)
66 cd00009 AAA The AAA+ (ATPases 97.0 0.001 2.2E-08 60.1 5.0 41 173-219 2-42 (151)
67 KOG1947 Leucine rich repeat pr 97.0 8.2E-05 1.8E-09 82.5 -2.8 117 400-521 187-308 (482)
68 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00059 1.3E-08 70.0 3.4 50 170-219 52-101 (361)
69 PF01637 Arch_ATPase: Archaeal 96.9 0.00045 9.7E-09 68.3 2.3 43 171-219 1-43 (234)
70 PF05659 RPW8: Arabidopsis bro 96.9 0.013 2.8E-07 52.4 11.1 108 2-139 7-115 (147)
71 KOG2982 Uncharacterized conser 96.9 0.00032 6.9E-09 68.1 0.5 89 398-495 68-157 (418)
72 PF13207 AAA_17: AAA domain; P 96.8 0.00081 1.7E-08 58.8 2.9 21 198-218 1-21 (121)
73 COG0466 Lon ATP-dependent Lon 96.8 0.0029 6.3E-08 69.2 7.4 51 168-218 322-372 (782)
74 TIGR00767 rho transcription te 96.8 0.0011 2.5E-08 68.7 3.7 41 196-237 168-208 (415)
75 KOG1644 U2-associated snRNP A' 96.7 0.0028 6.1E-08 58.4 5.4 55 461-518 43-98 (233)
76 PF05496 RuvB_N: Holliday junc 96.5 0.0017 3.7E-08 61.7 3.0 50 169-219 24-73 (233)
77 KOG1644 U2-associated snRNP A' 96.5 0.0028 6.2E-08 58.4 4.3 107 484-629 42-150 (233)
78 KOG2004 Mitochondrial ATP-depe 96.5 0.0082 1.8E-07 65.5 8.2 51 168-218 410-460 (906)
79 PRK06696 uridine kinase; Valid 96.5 0.0046 1E-07 60.5 6.0 42 174-218 3-44 (223)
80 COG3640 CooC CO dehydrogenase 96.5 0.014 3.1E-07 55.3 8.7 128 198-357 2-132 (255)
81 PTZ00301 uridine kinase; Provi 96.5 0.0038 8.2E-08 60.0 5.0 30 196-227 3-32 (210)
82 TIGR00635 ruvB Holliday juncti 96.4 0.0016 3.4E-08 67.4 2.3 50 169-219 4-53 (305)
83 KOG1947 Leucine rich repeat pr 96.4 0.00029 6.3E-09 78.1 -3.7 117 423-544 180-307 (482)
84 KOG1909 Ran GTPase-activating 96.4 0.0026 5.7E-08 63.4 3.2 138 377-518 156-308 (382)
85 TIGR02903 spore_lon_C ATP-depe 96.4 0.042 9E-07 62.1 13.2 61 169-235 154-217 (615)
86 PRK00080 ruvB Holliday junctio 96.2 0.0024 5.2E-08 66.7 2.4 50 169-219 25-74 (328)
87 PRK07261 topology modulation p 96.2 0.0028 6.1E-08 59.1 2.5 21 198-218 2-22 (171)
88 PRK07667 uridine kinase; Provi 96.2 0.011 2.3E-07 56.5 6.5 38 178-219 3-40 (193)
89 COG1618 Predicted nucleotide k 96.1 0.0063 1.4E-07 54.1 3.7 35 196-232 5-40 (179)
90 PRK10787 DNA-binding ATP-depen 96.1 0.019 4.1E-07 66.4 8.7 51 168-218 321-371 (784)
91 PF00485 PRK: Phosphoribulokin 96.0 0.0043 9.3E-08 59.3 2.9 21 198-218 1-21 (194)
92 PRK15455 PrkA family serine pr 95.9 0.0044 9.6E-08 67.0 2.6 49 170-218 77-125 (644)
93 KOG2739 Leucine-rich acidic nu 95.9 0.0041 9E-08 59.8 2.1 82 459-542 64-153 (260)
94 COG2256 MGS1 ATPase related to 95.9 0.0062 1.4E-07 62.3 3.2 44 166-218 27-70 (436)
95 PRK05480 uridine/cytidine kina 95.9 0.0063 1.4E-07 59.0 3.2 24 195-218 5-28 (209)
96 PF13238 AAA_18: AAA domain; P 95.8 0.0059 1.3E-07 53.8 2.6 21 199-219 1-21 (129)
97 KOG2123 Uncharacterized conser 95.8 0.00043 9.3E-09 66.6 -5.0 81 459-544 18-100 (388)
98 TIGR00235 udk uridine kinase. 95.8 0.0072 1.6E-07 58.4 3.2 24 195-218 5-28 (207)
99 TIGR00763 lon ATP-dependent pr 95.7 0.031 6.7E-07 65.3 8.7 51 169-219 320-370 (775)
100 PRK05541 adenylylsulfate kinas 95.7 0.013 2.8E-07 55.0 4.6 36 195-232 6-41 (176)
101 KOG2028 ATPase related to the 95.7 0.0088 1.9E-07 60.0 3.4 58 165-235 140-197 (554)
102 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.014 3E-07 57.4 4.9 53 175-235 23-75 (226)
103 PRK08233 hypothetical protein; 95.6 0.0083 1.8E-07 56.7 3.0 23 196-218 3-25 (182)
104 PRK13342 recombination factor 95.6 0.0066 1.4E-07 65.4 2.6 45 169-219 12-59 (413)
105 PRK06547 hypothetical protein; 95.6 0.014 3.1E-07 54.2 4.4 26 194-219 13-38 (172)
106 PF05729 NACHT: NACHT domain 95.6 0.011 2.3E-07 54.7 3.6 24 197-220 1-24 (166)
107 cd02019 NK Nucleoside/nucleoti 95.6 0.008 1.7E-07 46.3 2.2 21 198-218 1-21 (69)
108 COG5238 RNA1 Ran GTPase-activa 95.6 0.0058 1.2E-07 58.9 1.5 247 400-661 29-313 (388)
109 PRK04195 replication factor C 95.5 0.0081 1.8E-07 66.1 2.9 49 169-219 14-62 (482)
110 KOG2123 Uncharacterized conser 95.5 0.0024 5.3E-08 61.6 -1.1 99 400-514 18-123 (388)
111 PHA02544 44 clamp loader, smal 95.5 0.014 3E-07 60.7 4.3 47 168-219 20-66 (316)
112 PF13401 AAA_22: AAA domain; P 95.4 0.022 4.9E-07 50.3 4.9 58 195-266 3-63 (131)
113 COG0572 Udk Uridine kinase [Nu 95.4 0.013 2.8E-07 55.7 3.1 24 195-218 7-30 (218)
114 PF13173 AAA_14: AAA domain 95.3 0.015 3.3E-07 51.3 3.4 37 196-235 2-38 (128)
115 PRK06762 hypothetical protein; 95.3 0.012 2.6E-07 54.6 2.8 23 196-218 2-24 (166)
116 TIGR01242 26Sp45 26S proteasom 95.3 0.01 2.2E-07 62.9 2.5 53 167-219 120-179 (364)
117 COG2255 RuvB Holliday junction 95.2 0.012 2.6E-07 57.4 2.5 50 169-219 26-75 (332)
118 KOG2739 Leucine-rich acidic nu 95.2 0.013 2.7E-07 56.6 2.6 59 459-519 42-102 (260)
119 PRK09270 nucleoside triphospha 95.2 0.016 3.5E-07 56.9 3.6 25 194-218 31-55 (229)
120 PHA00729 NTP-binding motif con 95.2 0.023 5E-07 54.6 4.4 35 179-219 6-40 (226)
121 PRK12402 replication factor C 95.2 0.017 3.6E-07 60.7 3.8 45 169-219 15-59 (337)
122 PF03205 MobB: Molybdopterin g 95.1 0.033 7.1E-07 49.8 4.9 39 197-236 1-39 (140)
123 CHL00095 clpC Clp protease ATP 95.1 0.014 3.1E-07 68.5 3.3 45 169-219 179-223 (821)
124 PRK04040 adenylate kinase; Pro 95.1 0.015 3.3E-07 54.9 2.9 22 197-218 3-24 (188)
125 PF13671 AAA_33: AAA domain; P 95.1 0.016 3.5E-07 52.2 3.0 21 198-218 1-21 (143)
126 PF00560 LRR_1: Leucine Rich R 95.1 0.0071 1.5E-07 34.6 0.4 17 486-503 2-18 (22)
127 TIGR00554 panK_bact pantothena 95.1 0.027 5.9E-07 56.8 4.8 25 194-218 60-84 (290)
128 PRK14963 DNA polymerase III su 95.1 0.016 3.5E-07 63.6 3.4 61 169-234 14-74 (504)
129 cd02023 UMPK Uridine monophosp 95.0 0.013 2.8E-07 56.2 2.1 21 198-218 1-21 (198)
130 PF00560 LRR_1: Leucine Rich R 95.0 0.013 2.7E-07 33.6 1.2 21 461-482 1-21 (22)
131 PRK03839 putative kinase; Prov 95.0 0.016 3.5E-07 54.6 2.6 22 198-219 2-23 (180)
132 cd02024 NRK1 Nicotinamide ribo 95.0 0.014 3E-07 54.9 2.1 21 198-218 1-21 (187)
133 PRK13341 recombination factor 95.0 0.02 4.3E-07 65.4 3.7 45 169-219 28-75 (725)
134 PRK03992 proteasome-activating 94.9 0.011 2.4E-07 63.0 1.6 53 167-219 129-188 (389)
135 cd02025 PanK Pantothenate kina 94.9 0.013 2.9E-07 56.9 2.0 21 198-218 1-21 (220)
136 TIGR01360 aden_kin_iso1 adenyl 94.9 0.018 3.9E-07 54.7 2.8 24 195-218 2-25 (188)
137 COG1223 Predicted ATPase (AAA+ 94.9 0.017 3.7E-07 55.4 2.4 56 165-220 117-175 (368)
138 TIGR03345 VI_ClpV1 type VI sec 94.9 0.02 4.4E-07 67.0 3.6 45 169-219 187-231 (852)
139 TIGR03015 pepcterm_ATPase puta 94.9 0.022 4.7E-07 57.7 3.4 39 178-219 28-66 (269)
140 TIGR02881 spore_V_K stage V sp 94.8 0.028 6.2E-07 56.5 4.1 50 170-219 7-65 (261)
141 PRK14961 DNA polymerase III su 94.8 0.028 6.2E-07 59.4 4.2 45 169-218 16-60 (363)
142 cd02028 UMPK_like Uridine mono 94.8 0.027 5.9E-07 52.9 3.6 22 198-219 1-22 (179)
143 PF12061 DUF3542: Protein of u 94.8 0.089 1.9E-06 51.8 7.0 77 4-84 296-373 (402)
144 PRK06893 DNA replication initi 94.8 0.027 5.8E-07 55.3 3.6 38 196-235 39-76 (229)
145 PRK10751 molybdopterin-guanine 94.7 0.026 5.7E-07 52.0 3.2 25 195-219 5-29 (173)
146 PLN03025 replication factor C 94.7 0.027 5.9E-07 58.5 3.6 45 169-219 13-57 (319)
147 TIGR02639 ClpA ATP-dependent C 94.6 0.025 5.5E-07 65.6 3.6 45 169-219 182-226 (731)
148 COG1428 Deoxynucleoside kinase 94.6 0.023 4.9E-07 53.3 2.5 24 196-219 4-27 (216)
149 PRK00440 rfc replication facto 94.6 0.032 7E-07 58.0 4.0 45 169-219 17-61 (319)
150 PRK00625 shikimate kinase; Pro 94.6 0.023 4.9E-07 52.9 2.5 21 198-218 2-22 (173)
151 PF00004 AAA: ATPase family as 94.5 0.024 5.2E-07 50.1 2.5 21 199-219 1-21 (132)
152 TIGR00176 mobB molybdopterin-g 94.5 0.038 8.2E-07 50.4 3.6 22 198-219 1-22 (155)
153 smart00382 AAA ATPases associa 94.5 0.026 5.6E-07 50.3 2.6 23 197-219 3-25 (148)
154 PRK10865 protein disaggregatio 94.5 0.029 6.3E-07 65.9 3.6 45 169-219 178-222 (857)
155 PRK00889 adenylylsulfate kinas 94.4 0.032 6.9E-07 52.3 3.2 25 195-219 3-27 (175)
156 PRK10536 hypothetical protein; 94.4 0.15 3.2E-06 50.1 7.7 54 168-229 54-107 (262)
157 TIGR03263 guanyl_kin guanylate 94.4 0.028 6E-07 53.0 2.7 22 197-218 2-23 (180)
158 TIGR02322 phosphon_PhnN phosph 94.4 0.028 6E-07 52.9 2.7 23 197-219 2-24 (179)
159 PRK14962 DNA polymerase III su 94.4 0.038 8.3E-07 60.1 4.0 45 169-218 14-58 (472)
160 PRK08084 DNA replication initi 94.4 0.063 1.4E-06 52.9 5.2 37 196-234 45-81 (235)
161 cd02020 CMPK Cytidine monophos 94.4 0.025 5.4E-07 51.2 2.2 21 198-218 1-21 (147)
162 PRK05439 pantothenate kinase; 94.4 0.056 1.2E-06 55.0 4.9 26 193-218 83-108 (311)
163 PF01583 APS_kinase: Adenylyls 94.3 0.069 1.5E-06 48.3 4.9 34 197-232 3-36 (156)
164 PRK00131 aroK shikimate kinase 94.3 0.03 6.5E-07 52.3 2.7 23 196-218 4-26 (175)
165 PF00910 RNA_helicase: RNA hel 94.3 0.025 5.4E-07 48.0 1.9 21 199-219 1-21 (107)
166 COG2019 AdkA Archaeal adenylat 94.3 0.038 8.2E-07 49.5 3.0 24 195-218 3-26 (189)
167 PRK06217 hypothetical protein; 94.3 0.028 6E-07 53.1 2.4 22 198-219 3-24 (183)
168 PTZ00112 origin recognition co 94.2 0.036 7.9E-07 62.8 3.5 51 168-219 754-804 (1164)
169 KOG1532 GTPase XAB1, interacts 94.2 0.034 7.3E-07 53.8 2.7 26 194-219 17-42 (366)
170 TIGR00150 HI0065_YjeE ATPase, 94.1 0.055 1.2E-06 47.5 3.8 39 177-219 7-45 (133)
171 PRK03846 adenylylsulfate kinas 94.1 0.041 8.8E-07 52.7 3.3 24 195-218 23-46 (198)
172 COG1936 Predicted nucleotide k 94.1 0.035 7.6E-07 50.2 2.5 20 198-217 2-21 (180)
173 COG1474 CDC6 Cdc6-related prot 94.1 0.15 3.2E-06 53.6 7.5 50 168-219 16-65 (366)
174 TIGR01359 UMP_CMP_kin_fam UMP- 94.1 0.029 6.3E-07 53.0 2.1 21 198-218 1-21 (183)
175 CHL00181 cbbX CbbX; Provisiona 94.1 0.085 1.8E-06 53.6 5.6 23 197-219 60-82 (287)
176 PRK14957 DNA polymerase III su 94.0 0.047 1E-06 60.2 3.8 45 169-218 16-60 (546)
177 COG1124 DppF ABC-type dipeptid 94.0 0.039 8.5E-07 52.8 2.7 23 196-218 33-55 (252)
178 PF07726 AAA_3: ATPase family 94.0 0.025 5.5E-07 48.8 1.3 26 199-226 2-27 (131)
179 PRK00300 gmk guanylate kinase; 94.0 0.036 7.9E-07 53.4 2.6 24 195-218 4-27 (205)
180 PRK13949 shikimate kinase; Pro 94.0 0.036 7.7E-07 51.5 2.4 21 198-218 3-23 (169)
181 PLN02318 phosphoribulokinase/u 93.9 0.065 1.4E-06 58.6 4.5 25 194-218 63-87 (656)
182 COG0194 Gmk Guanylate kinase [ 93.9 0.065 1.4E-06 49.3 3.8 24 196-219 4-27 (191)
183 cd00820 PEPCK_HprK Phosphoenol 93.8 0.051 1.1E-06 45.6 2.8 22 196-217 15-36 (107)
184 TIGR03346 chaperone_ClpB ATP-d 93.8 0.046 1E-06 64.5 3.6 45 169-219 173-217 (852)
185 cd02021 GntK Gluconate kinase 93.8 0.037 7.9E-07 50.3 2.2 22 198-219 1-22 (150)
186 PRK10078 ribose 1,5-bisphospho 93.8 0.044 9.6E-07 51.9 2.8 22 197-218 3-24 (186)
187 TIGR00073 hypB hydrogenase acc 93.8 0.047 1E-06 52.7 3.0 27 193-219 19-45 (207)
188 PRK08727 hypothetical protein; 93.8 0.083 1.8E-06 52.0 4.8 36 197-234 42-77 (233)
189 PF00158 Sigma54_activat: Sigm 93.8 0.048 1.1E-06 50.4 2.9 45 171-219 1-45 (168)
190 PF08298 AAA_PrkA: PrkA AAA do 93.8 0.058 1.3E-06 55.1 3.7 51 168-218 60-110 (358)
191 PRK13947 shikimate kinase; Pro 93.8 0.041 8.9E-07 51.3 2.5 21 198-218 3-23 (171)
192 cd00071 GMPK Guanosine monopho 93.7 0.04 8.7E-07 49.2 2.2 21 198-218 1-21 (137)
193 cd00464 SK Shikimate kinase (S 93.7 0.043 9.3E-07 50.1 2.5 20 199-218 2-21 (154)
194 cd00227 CPT Chloramphenicol (C 93.7 0.045 9.7E-07 51.3 2.6 22 197-218 3-24 (175)
195 COG1763 MobB Molybdopterin-gua 93.7 0.048 1E-06 49.6 2.6 24 196-219 2-25 (161)
196 PRK08903 DnaA regulatory inact 93.7 0.073 1.6E-06 52.3 4.2 24 196-219 42-65 (227)
197 PF03193 DUF258: Protein of un 93.6 0.078 1.7E-06 48.2 3.8 35 176-219 24-58 (161)
198 PF01078 Mg_chelatase: Magnesi 93.6 0.07 1.5E-06 50.4 3.7 42 169-218 3-44 (206)
199 PF00005 ABC_tran: ABC transpo 93.6 0.057 1.2E-06 48.2 3.0 23 197-219 12-34 (137)
200 COG0237 CoaE Dephospho-CoA kin 93.6 0.054 1.2E-06 51.5 2.9 23 196-218 2-24 (201)
201 PRK13975 thymidylate kinase; P 93.6 0.05 1.1E-06 52.0 2.8 22 197-218 3-24 (196)
202 PRK13531 regulatory ATPase Rav 93.6 0.067 1.5E-06 57.3 3.9 41 170-218 21-61 (498)
203 PRK11889 flhF flagellar biosyn 93.6 0.08 1.7E-06 55.1 4.3 24 195-218 240-263 (436)
204 PRK05896 DNA polymerase III su 93.6 0.063 1.4E-06 59.3 3.8 45 169-218 16-60 (605)
205 PRK14956 DNA polymerase III su 93.6 0.063 1.4E-06 57.7 3.7 45 169-218 18-62 (484)
206 cd01862 Rab7 Rab7 subfamily. 93.6 0.081 1.8E-06 49.1 4.1 22 198-219 2-23 (172)
207 PRK11034 clpA ATP-dependent Cl 93.5 0.059 1.3E-06 62.0 3.7 45 169-219 186-230 (758)
208 COG1102 Cmk Cytidylate kinase 93.5 0.048 1E-06 48.6 2.2 22 198-219 2-23 (179)
209 PRK05642 DNA replication initi 93.5 0.14 3.1E-06 50.4 5.9 37 196-234 45-81 (234)
210 PRK14960 DNA polymerase III su 93.5 0.075 1.6E-06 59.1 4.2 45 169-218 15-59 (702)
211 PF00448 SRP54: SRP54-type pro 93.5 0.12 2.6E-06 49.2 5.1 37 196-234 1-37 (196)
212 cd00877 Ran Ran (Ras-related n 93.5 0.094 2E-06 48.6 4.4 21 198-218 2-22 (166)
213 PRK14955 DNA polymerase III su 93.5 0.072 1.6E-06 57.1 4.0 45 169-218 16-60 (397)
214 PRK14530 adenylate kinase; Pro 93.5 0.048 1E-06 53.0 2.5 21 198-218 5-25 (215)
215 PF08477 Miro: Miro-like prote 93.5 0.053 1.1E-06 46.9 2.5 22 199-220 2-23 (119)
216 cd02027 APSK Adenosine 5'-phos 93.4 0.048 1E-06 49.5 2.2 22 198-219 1-22 (149)
217 PRK13695 putative NTPase; Prov 93.4 0.075 1.6E-06 49.7 3.6 22 198-219 2-23 (174)
218 cd01120 RecA-like_NTPases RecA 93.4 0.083 1.8E-06 48.5 3.8 38 198-237 1-38 (165)
219 PRK13236 nitrogenase reductase 93.3 0.062 1.4E-06 55.0 3.2 26 193-218 3-28 (296)
220 PTZ00361 26 proteosome regulat 93.3 0.052 1.1E-06 58.2 2.6 51 169-219 183-240 (438)
221 cd01133 F1-ATPase_beta F1 ATP 93.3 0.088 1.9E-06 52.4 3.9 39 196-236 69-108 (274)
222 PF04665 Pox_A32: Poxvirus A32 93.3 0.082 1.8E-06 51.5 3.6 36 196-233 13-48 (241)
223 PRK14738 gmk guanylate kinase; 93.3 0.071 1.5E-06 51.4 3.2 24 195-218 12-35 (206)
224 TIGR01313 therm_gnt_kin carboh 93.2 0.047 1E-06 50.4 2.0 20 199-218 1-20 (163)
225 PRK12377 putative replication 93.2 0.075 1.6E-06 52.5 3.4 39 196-236 101-139 (248)
226 COG1419 FlhF Flagellar GTP-bin 93.2 0.054 1.2E-06 56.2 2.4 24 195-218 202-226 (407)
227 PRK10463 hydrogenase nickel in 93.2 0.13 2.7E-06 51.7 4.9 26 193-218 101-126 (290)
228 smart00175 RAB Rab subfamily o 93.2 0.1 2.2E-06 48.0 4.1 21 199-219 3-23 (164)
229 PRK14493 putative bifunctional 93.2 0.062 1.3E-06 53.9 2.7 35 197-234 2-36 (274)
230 PRK12339 2-phosphoglycerate ki 93.2 0.071 1.5E-06 50.7 3.0 24 196-219 3-26 (197)
231 COG0563 Adk Adenylate kinase a 93.1 0.059 1.3E-06 50.3 2.4 22 198-219 2-23 (178)
232 PRK05057 aroK shikimate kinase 93.1 0.062 1.3E-06 50.1 2.5 23 196-218 4-26 (172)
233 PF02562 PhoH: PhoH-like prote 93.1 0.11 2.4E-06 49.4 4.2 54 172-233 3-56 (205)
234 TIGR01287 nifH nitrogenase iro 93.1 0.056 1.2E-06 54.9 2.4 22 197-218 1-22 (275)
235 TIGR02237 recomb_radB DNA repa 93.1 0.13 2.8E-06 49.8 4.8 40 195-236 11-50 (209)
236 PF07728 AAA_5: AAA domain (dy 93.0 0.068 1.5E-06 47.8 2.6 20 199-218 2-21 (139)
237 PRK14949 DNA polymerase III su 93.0 0.086 1.9E-06 60.5 3.9 46 169-219 16-61 (944)
238 PLN02348 phosphoribulokinase 93.0 0.075 1.6E-06 55.4 3.2 25 194-218 47-71 (395)
239 PF01926 MMR_HSR1: 50S ribosom 93.0 0.076 1.7E-06 45.7 2.8 21 199-219 2-22 (116)
240 KOG4252 GTP-binding protein [S 93.0 0.11 2.3E-06 46.7 3.6 75 198-273 22-130 (246)
241 cd03116 MobB Molybdenum is an 93.0 0.078 1.7E-06 48.5 2.9 22 197-218 2-23 (159)
242 PRK08356 hypothetical protein; 93.0 0.084 1.8E-06 50.4 3.3 21 196-216 5-25 (195)
243 TIGR00064 ftsY signal recognit 92.9 0.14 3E-06 51.6 4.9 24 195-218 71-94 (272)
244 PLN02796 D-glycerate 3-kinase 92.9 0.078 1.7E-06 54.4 3.1 24 195-218 99-122 (347)
245 PRK06620 hypothetical protein; 92.9 0.069 1.5E-06 51.7 2.6 23 197-219 45-67 (214)
246 PRK09825 idnK D-gluconate kina 92.9 0.071 1.5E-06 49.9 2.6 22 197-218 4-25 (176)
247 TIGR00602 rad24 checkpoint pro 92.9 0.098 2.1E-06 58.7 4.1 53 166-219 81-133 (637)
248 COG1100 GTPase SAR1 and relate 92.9 0.067 1.5E-06 52.1 2.5 23 197-219 6-28 (219)
249 PRK13946 shikimate kinase; Pro 92.9 0.066 1.4E-06 50.6 2.4 23 196-218 10-32 (184)
250 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 92.9 0.13 2.7E-06 47.6 4.2 22 198-219 4-25 (166)
251 COG1126 GlnQ ABC-type polar am 92.9 0.079 1.7E-06 49.9 2.7 24 196-219 28-51 (240)
252 KOG0991 Replication factor C, 92.8 0.089 1.9E-06 49.8 3.0 44 169-218 27-70 (333)
253 PRK04182 cytidylate kinase; Pr 92.8 0.074 1.6E-06 50.0 2.6 21 198-218 2-22 (180)
254 PRK14958 DNA polymerase III su 92.8 0.098 2.1E-06 57.6 3.9 45 169-218 16-60 (509)
255 TIGR03689 pup_AAA proteasome A 92.8 0.12 2.7E-06 56.3 4.5 52 168-219 181-239 (512)
256 PF00308 Bac_DnaA: Bacterial d 92.8 0.22 4.8E-06 48.4 5.9 46 171-219 11-57 (219)
257 COG3899 Predicted ATPase [Gene 92.8 0.1 2.3E-06 61.2 4.2 51 170-225 1-51 (849)
258 PRK05564 DNA polymerase III su 92.7 0.11 2.4E-06 53.8 3.9 45 169-218 4-48 (313)
259 cd02117 NifH_like This family 92.7 0.072 1.6E-06 51.7 2.5 22 197-218 1-22 (212)
260 PF06309 Torsin: Torsin; Inte 92.7 0.15 3.2E-06 44.0 4.0 51 169-219 25-76 (127)
261 cd04110 Rab35 Rab35 subfamily. 92.7 0.14 3.1E-06 49.0 4.5 23 196-218 6-28 (199)
262 PRK12323 DNA polymerase III su 92.7 0.097 2.1E-06 58.1 3.6 45 169-218 16-60 (700)
263 PF03266 NTPase_1: NTPase; In 92.7 0.075 1.6E-06 49.2 2.4 21 199-219 2-22 (168)
264 cd04139 RalA_RalB RalA/RalB su 92.7 0.077 1.7E-06 48.8 2.5 22 198-219 2-23 (164)
265 PRK13948 shikimate kinase; Pro 92.7 0.089 1.9E-06 49.3 2.9 24 195-218 9-32 (182)
266 PRK14974 cell division protein 92.7 0.15 3.1E-06 52.8 4.7 24 195-218 139-162 (336)
267 TIGR02397 dnaX_nterm DNA polym 92.7 0.12 2.5E-06 54.7 4.2 45 169-218 14-58 (355)
268 PLN03071 GTP-binding nuclear p 92.7 0.14 2.9E-06 50.0 4.3 24 195-218 12-35 (219)
269 cd04155 Arl3 Arl3 subfamily. 92.6 0.09 2E-06 49.0 2.9 25 195-219 13-37 (173)
270 PF13504 LRR_7: Leucine rich r 92.6 0.075 1.6E-06 28.2 1.3 16 485-501 2-17 (17)
271 TIGR02173 cyt_kin_arch cytidyl 92.6 0.084 1.8E-06 49.1 2.7 21 198-218 2-22 (171)
272 PRK13232 nifH nitrogenase redu 92.6 0.076 1.7E-06 53.8 2.6 22 197-218 2-23 (273)
273 PF03029 ATP_bind_1: Conserved 92.6 0.063 1.4E-06 52.8 1.9 32 201-234 1-32 (238)
274 PRK08691 DNA polymerase III su 92.6 0.11 2.4E-06 58.3 3.9 45 169-218 16-60 (709)
275 cd02022 DPCK Dephospho-coenzym 92.6 0.071 1.5E-06 50.1 2.1 21 198-218 1-21 (179)
276 cd03114 ArgK-like The function 92.6 0.075 1.6E-06 48.1 2.2 22 198-219 1-22 (148)
277 TIGR03499 FlhF flagellar biosy 92.6 0.091 2E-06 53.3 3.0 25 195-219 193-217 (282)
278 COG1120 FepC ABC-type cobalami 92.6 0.086 1.9E-06 51.8 2.7 23 196-218 28-50 (258)
279 PF10662 PduV-EutP: Ethanolami 92.5 0.091 2E-06 46.6 2.5 23 197-219 2-24 (143)
280 PRK09087 hypothetical protein; 92.5 0.087 1.9E-06 51.5 2.7 24 196-219 44-67 (226)
281 TIGR02030 BchI-ChlI magnesium 92.5 0.12 2.7E-06 53.5 3.9 44 169-218 4-47 (337)
282 PTZ00454 26S protease regulato 92.5 0.081 1.8E-06 56.3 2.6 52 168-219 144-202 (398)
283 cd01983 Fer4_NifH The Fer4_Nif 92.5 0.082 1.8E-06 43.6 2.2 22 198-219 1-22 (99)
284 KOG0473 Leucine-rich repeat pr 92.5 0.009 2E-07 56.2 -3.9 62 427-495 61-122 (326)
285 PF00142 Fer4_NifH: 4Fe-4S iro 92.5 0.23 5.1E-06 48.5 5.4 42 197-240 1-42 (273)
286 PRK13768 GTPase; Provisional 92.4 0.093 2E-06 52.3 2.9 23 196-218 2-24 (253)
287 PRK14490 putative bifunctional 92.4 0.14 3.1E-06 54.2 4.4 30 195-226 4-33 (369)
288 cd03229 ABC_Class3 This class 92.4 0.095 2.1E-06 49.2 2.8 23 196-218 26-48 (178)
289 COG0542 clpA ATP-binding subun 92.4 1.8 3.9E-05 49.5 13.1 50 169-218 491-543 (786)
290 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.4 0.092 2E-06 51.2 2.8 24 196-219 30-53 (218)
291 PRK14951 DNA polymerase III su 92.4 0.12 2.6E-06 57.8 4.0 45 169-218 16-60 (618)
292 PRK13230 nitrogenase reductase 92.4 0.086 1.9E-06 53.6 2.7 22 197-218 2-23 (279)
293 cd03225 ABC_cobalt_CbiO_domain 92.4 0.093 2E-06 50.8 2.8 24 196-219 27-50 (211)
294 COG1116 TauB ABC-type nitrate/ 92.4 0.095 2.1E-06 50.7 2.7 23 196-218 29-51 (248)
295 cd03238 ABC_UvrA The excision 92.4 0.098 2.1E-06 48.8 2.7 23 196-218 21-43 (176)
296 cd03222 ABC_RNaseL_inhibitor T 92.3 0.1 2.2E-06 48.8 2.8 23 196-218 25-47 (177)
297 PRK06761 hypothetical protein; 92.3 0.093 2E-06 52.6 2.7 23 197-219 4-26 (282)
298 PHA02575 1 deoxynucleoside mon 92.3 0.098 2.1E-06 50.0 2.7 21 198-218 2-22 (227)
299 PRK14527 adenylate kinase; Pro 92.3 0.099 2.1E-06 49.7 2.8 24 195-218 5-28 (191)
300 cd01672 TMPK Thymidine monopho 92.3 0.093 2E-06 50.2 2.6 22 198-219 2-23 (200)
301 PRK01184 hypothetical protein; 92.3 0.097 2.1E-06 49.5 2.7 18 197-214 2-19 (184)
302 PRK14964 DNA polymerase III su 92.3 0.12 2.7E-06 56.0 3.8 45 169-218 13-57 (491)
303 PRK03731 aroL shikimate kinase 92.3 0.093 2E-06 48.9 2.5 21 198-218 4-24 (171)
304 PRK07994 DNA polymerase III su 92.3 0.13 2.7E-06 57.9 3.9 46 169-219 16-61 (647)
305 KOG2543 Origin recognition com 92.3 0.15 3.2E-06 52.1 4.0 64 168-239 5-68 (438)
306 PRK10416 signal recognition pa 92.3 0.11 2.4E-06 53.5 3.2 25 195-219 113-137 (318)
307 PLN02200 adenylate kinase fami 92.3 0.11 2.3E-06 51.1 3.0 24 195-218 42-65 (234)
308 PRK09435 membrane ATPase/prote 92.3 0.16 3.5E-06 52.3 4.4 37 178-218 42-78 (332)
309 COG4608 AppF ABC-type oligopep 92.3 0.1 2.2E-06 51.2 2.7 24 195-218 38-61 (268)
310 COG4107 PhnK ABC-type phosphon 92.3 0.11 2.3E-06 46.9 2.7 22 197-218 33-54 (258)
311 TIGR01166 cbiO cobalt transpor 92.2 0.1 2.2E-06 49.6 2.8 23 197-219 19-41 (190)
312 KOG3864 Uncharacterized conser 92.2 0.016 3.4E-07 53.7 -2.7 66 617-689 123-189 (221)
313 COG0467 RAD55 RecA-superfamily 92.2 0.18 4E-06 50.6 4.7 42 195-238 22-63 (260)
314 TIGR00960 3a0501s02 Type II (G 92.2 0.1 2.2E-06 50.8 2.8 22 197-218 30-51 (216)
315 PRK08116 hypothetical protein; 92.2 0.12 2.6E-06 51.9 3.3 38 197-236 115-152 (268)
316 PRK14737 gmk guanylate kinase; 92.1 0.13 2.8E-06 48.6 3.3 25 195-219 3-27 (186)
317 CHL00081 chlI Mg-protoporyphyr 92.1 0.1 2.3E-06 54.0 2.9 46 168-219 16-61 (350)
318 PRK09183 transposase/IS protei 92.1 0.21 4.6E-06 49.9 5.0 23 197-219 103-125 (259)
319 PF13521 AAA_28: AAA domain; P 92.1 0.1 2.2E-06 48.2 2.6 20 199-218 2-21 (163)
320 cd03297 ABC_ModC_molybdenum_tr 92.1 0.11 2.5E-06 50.4 3.0 23 195-218 23-45 (214)
321 COG1222 RPT1 ATP-dependent 26S 92.1 0.12 2.7E-06 52.3 3.2 54 166-219 148-208 (406)
322 cd02040 NifH NifH gene encodes 92.1 0.1 2.2E-06 52.8 2.7 22 197-218 2-23 (270)
323 PF00625 Guanylate_kin: Guanyl 92.1 0.1 2.3E-06 49.2 2.6 23 196-218 2-24 (183)
324 PF03308 ArgK: ArgK protein; 92.0 0.31 6.8E-06 47.6 5.8 39 177-219 14-52 (266)
325 TIGR00750 lao LAO/AO transport 92.0 0.17 3.6E-06 52.0 4.2 26 194-219 32-57 (300)
326 TIGR00390 hslU ATP-dependent p 92.0 0.15 3.3E-06 53.6 3.8 51 169-219 12-70 (441)
327 cd02026 PRK Phosphoribulokinas 92.0 0.09 2E-06 52.9 2.2 21 198-218 1-21 (273)
328 PRK14969 DNA polymerase III su 92.0 0.15 3.2E-06 56.6 4.0 45 169-218 16-60 (527)
329 PRK05703 flhF flagellar biosyn 92.0 0.17 3.8E-06 54.3 4.4 23 196-218 221-243 (424)
330 PLN03046 D-glycerate 3-kinase; 92.0 0.13 2.9E-06 53.8 3.3 24 195-218 211-234 (460)
331 PRK14970 DNA polymerase III su 92.0 0.16 3.5E-06 54.0 4.2 45 169-218 17-61 (367)
332 PRK08099 bifunctional DNA-bind 92.0 0.099 2.2E-06 55.6 2.5 25 194-218 217-241 (399)
333 COG1703 ArgK Putative periplas 92.0 0.22 4.7E-06 49.4 4.6 38 178-219 37-74 (323)
334 cd04106 Rab23_lke Rab23-like s 91.9 0.19 4.1E-06 46.1 4.2 21 199-219 3-23 (162)
335 PRK07003 DNA polymerase III su 91.9 0.14 3E-06 57.8 3.6 45 169-218 16-60 (830)
336 PRK06645 DNA polymerase III su 91.9 0.14 3E-06 56.1 3.6 46 169-219 21-66 (507)
337 PRK14954 DNA polymerase III su 91.9 0.15 3.2E-06 57.3 3.9 45 169-218 16-60 (620)
338 cd03259 ABC_Carb_Solutes_like 91.9 0.12 2.6E-06 50.2 2.8 23 196-218 26-48 (213)
339 cd01131 PilT Pilus retraction 91.8 0.18 4E-06 48.2 4.0 21 198-218 3-23 (198)
340 PRK13233 nifH nitrogenase redu 91.8 0.11 2.5E-06 52.6 2.8 22 197-218 3-24 (275)
341 PRK15453 phosphoribulokinase; 91.8 0.13 2.8E-06 51.1 3.0 24 195-218 4-27 (290)
342 PRK14952 DNA polymerase III su 91.8 0.16 3.5E-06 56.6 4.0 45 169-218 13-57 (584)
343 cd03261 ABC_Org_Solvent_Resist 91.8 0.12 2.6E-06 51.1 2.8 23 197-219 27-49 (235)
344 cd03293 ABC_NrtD_SsuB_transpor 91.8 0.12 2.6E-06 50.4 2.8 23 197-219 31-53 (220)
345 cd01130 VirB11-like_ATPase Typ 91.8 0.22 4.7E-06 47.2 4.4 35 177-218 13-47 (186)
346 PRK13541 cytochrome c biogenes 91.8 0.12 2.7E-06 49.3 2.8 24 196-219 26-49 (195)
347 cd03263 ABC_subfamily_A The AB 91.7 0.12 2.7E-06 50.4 2.8 24 196-219 28-51 (220)
348 cd03269 ABC_putative_ATPase Th 91.7 0.12 2.7E-06 49.9 2.8 24 196-219 26-49 (210)
349 TIGR02673 FtsE cell division A 91.7 0.12 2.7E-06 50.1 2.8 22 197-218 29-50 (214)
350 cd03235 ABC_Metallic_Cations A 91.7 0.12 2.6E-06 50.1 2.7 24 196-219 25-48 (213)
351 COG1136 SalX ABC-type antimicr 91.7 0.13 2.9E-06 49.5 2.8 22 197-218 32-53 (226)
352 cd01861 Rab6 Rab6 subfamily. 91.7 0.21 4.5E-06 45.8 4.1 21 199-219 3-23 (161)
353 TIGR01425 SRP54_euk signal rec 91.6 0.38 8.2E-06 51.3 6.4 24 195-218 99-122 (429)
354 COG3638 ABC-type phosphate/pho 91.6 0.13 2.9E-06 49.0 2.7 23 196-218 30-52 (258)
355 PRK07952 DNA replication prote 91.6 0.24 5.3E-06 48.8 4.6 39 196-236 99-137 (244)
356 PRK14722 flhF flagellar biosyn 91.6 0.2 4.4E-06 52.4 4.3 24 196-219 137-160 (374)
357 cd02034 CooC The accessory pro 91.6 0.13 2.8E-06 44.2 2.4 21 199-219 2-22 (116)
358 TIGR02315 ABC_phnC phosphonate 91.6 0.13 2.8E-06 51.1 2.8 22 197-218 29-50 (243)
359 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 91.6 0.18 3.9E-06 49.1 3.6 21 199-219 4-24 (222)
360 cd03260 ABC_PstB_phosphate_tra 91.5 0.13 2.9E-06 50.4 2.8 23 196-218 26-48 (227)
361 cd03115 SRP The signal recogni 91.5 0.14 3E-06 47.8 2.8 22 198-219 2-23 (173)
362 PF02374 ArsA_ATPase: Anion-tr 91.5 0.12 2.7E-06 52.9 2.6 22 197-218 2-23 (305)
363 PRK10584 putative ABC transpor 91.5 0.13 2.9E-06 50.4 2.8 23 196-218 36-58 (228)
364 cd04121 Rab40 Rab40 subfamily. 91.5 0.22 4.7E-06 47.3 4.1 24 196-219 6-29 (189)
365 COG1121 ZnuC ABC-type Mn/Zn tr 91.5 0.13 2.8E-06 50.3 2.6 22 197-218 31-52 (254)
366 cd03264 ABC_drug_resistance_li 91.5 0.12 2.7E-06 50.0 2.5 21 198-218 27-47 (211)
367 PRK13235 nifH nitrogenase redu 91.5 0.12 2.7E-06 52.3 2.5 22 197-218 2-23 (274)
368 cd03256 ABC_PhnC_transporter A 91.5 0.13 2.9E-06 50.9 2.8 23 196-218 27-49 (241)
369 COG0003 ArsA Predicted ATPase 91.5 0.14 2.9E-06 52.5 2.8 37 196-234 2-38 (322)
370 cd03226 ABC_cobalt_CbiO_domain 91.5 0.14 3E-06 49.4 2.8 23 196-218 26-48 (205)
371 PRK09112 DNA polymerase III su 91.5 0.23 4.9E-06 52.0 4.5 46 168-218 22-67 (351)
372 TIGR03574 selen_PSTK L-seryl-t 91.5 0.11 2.4E-06 51.8 2.1 21 199-219 2-22 (249)
373 PRK09361 radB DNA repair and r 91.4 0.25 5.4E-06 48.4 4.6 39 195-235 22-60 (225)
374 cd01394 radB RadB. The archaea 91.4 0.26 5.6E-06 48.0 4.7 38 195-234 18-55 (218)
375 cd03296 ABC_CysA_sulfate_impor 91.4 0.14 3E-06 50.8 2.8 24 196-219 28-51 (239)
376 TIGR00455 apsK adenylylsulfate 91.4 0.16 3.5E-06 47.9 3.1 25 195-219 17-41 (184)
377 cd04117 Rab15 Rab15 subfamily. 91.4 0.24 5.2E-06 45.5 4.2 21 198-218 2-22 (161)
378 PRK15177 Vi polysaccharide exp 91.4 0.14 3.1E-06 49.6 2.7 24 196-219 13-36 (213)
379 TIGR02016 BchX chlorophyllide 91.4 0.13 2.7E-06 52.7 2.5 22 197-218 1-22 (296)
380 PRK13231 nitrogenase reductase 91.4 0.14 3.1E-06 51.5 2.9 22 197-218 3-24 (264)
381 cd04163 Era Era subfamily. Er 91.4 0.16 3.4E-06 46.6 3.0 24 196-219 3-26 (168)
382 cd03237 ABC_RNaseL_inhibitor_d 91.4 0.14 3.1E-06 50.8 2.8 24 196-219 25-48 (246)
383 PTZ00088 adenylate kinase 1; P 91.4 0.13 2.8E-06 50.3 2.4 20 199-218 9-28 (229)
384 KOG0727 26S proteasome regulat 91.4 2.5 5.5E-05 40.7 10.8 52 168-219 154-212 (408)
385 cd03292 ABC_FtsE_transporter F 91.3 0.14 3.1E-06 49.6 2.8 24 196-219 27-50 (214)
386 PRK12727 flagellar biosynthesi 91.3 0.3 6.5E-06 53.1 5.3 24 195-218 349-372 (559)
387 TIGR03864 PQQ_ABC_ATP ABC tran 91.3 0.14 3.1E-06 50.5 2.8 23 196-218 27-49 (236)
388 PRK05201 hslU ATP-dependent pr 91.3 0.21 4.6E-06 52.6 4.1 50 169-218 15-72 (443)
389 PRK09111 DNA polymerase III su 91.3 0.18 3.9E-06 56.5 3.8 45 169-218 24-68 (598)
390 cd01428 ADK Adenylate kinase ( 91.3 0.13 2.8E-06 49.0 2.4 20 199-218 2-21 (194)
391 cd03265 ABC_DrrA DrrA is the A 91.3 0.15 3.2E-06 49.8 2.8 23 196-218 26-48 (220)
392 smart00173 RAS Ras subfamily o 91.3 0.14 3E-06 47.2 2.5 22 198-219 2-23 (164)
393 cd04119 RJL RJL (RabJ-Like) su 91.3 0.14 3E-06 47.2 2.5 21 199-219 3-23 (168)
394 TIGR02211 LolD_lipo_ex lipopro 91.3 0.15 3.2E-06 49.9 2.8 24 196-219 31-54 (221)
395 PRK06526 transposase; Provisio 91.3 0.11 2.3E-06 51.7 1.8 24 196-219 98-121 (254)
396 PRK07429 phosphoribulokinase; 91.3 0.17 3.7E-06 52.3 3.3 25 194-218 6-30 (327)
397 PRK00698 tmk thymidylate kinas 91.3 0.15 3.3E-06 49.1 2.8 23 197-219 4-26 (205)
398 PRK13538 cytochrome c biogenes 91.2 0.15 3.3E-06 49.1 2.8 24 196-219 27-50 (204)
399 cd04159 Arl10_like Arl10-like 91.2 0.14 3.1E-06 46.4 2.5 21 199-219 2-22 (159)
400 PF03215 Rad17: Rad17 cell cyc 91.2 0.2 4.4E-06 55.0 4.0 62 168-234 18-79 (519)
401 cd01878 HflX HflX subfamily. 91.2 0.15 3.3E-06 49.0 2.8 26 195-220 40-65 (204)
402 cd03224 ABC_TM1139_LivF_branch 91.2 0.16 3.4E-06 49.7 2.9 23 196-218 26-48 (222)
403 cd00876 Ras Ras family. The R 91.2 0.15 3.1E-06 46.6 2.5 21 199-219 2-22 (160)
404 PLN00020 ribulose bisphosphate 91.2 0.16 3.4E-06 52.3 2.9 26 194-219 146-171 (413)
405 TIGR01184 ntrCD nitrate transp 91.2 0.15 3.3E-06 50.1 2.8 23 197-219 12-34 (230)
406 PRK10865 protein disaggregatio 91.1 0.28 6.2E-06 57.8 5.4 50 169-218 568-620 (857)
407 cd04113 Rab4 Rab4 subfamily. 91.1 0.15 3.2E-06 46.8 2.5 21 199-219 3-23 (161)
408 PRK10247 putative ABC transpor 91.1 0.16 3.4E-06 49.8 2.8 24 196-219 33-56 (225)
409 cd03257 ABC_NikE_OppD_transpor 91.1 0.15 3.3E-06 50.0 2.7 24 196-219 31-54 (228)
410 cd03278 ABC_SMC_barmotin Barmo 91.1 0.15 3.2E-06 48.8 2.5 21 198-218 24-44 (197)
411 TIGR00231 small_GTP small GTP- 91.1 0.15 3.3E-06 46.1 2.6 22 198-219 3-24 (161)
412 TIGR01281 DPOR_bchL light-inde 91.1 0.15 3.2E-06 51.6 2.7 21 198-218 2-22 (268)
413 cd03301 ABC_MalK_N The N-termi 91.1 0.16 3.4E-06 49.3 2.8 24 196-219 26-49 (213)
414 PRK11248 tauB taurine transpor 91.1 0.16 3.4E-06 50.9 2.8 23 197-219 28-50 (255)
415 PRK11629 lolD lipoprotein tran 91.1 0.16 3.4E-06 50.1 2.8 22 197-218 36-57 (233)
416 cd00154 Rab Rab family. Rab G 91.1 0.15 3.3E-06 46.2 2.5 21 199-219 3-23 (159)
417 TIGR00101 ureG urease accessor 91.0 0.15 3.2E-06 48.8 2.4 21 198-218 3-23 (199)
418 cd03258 ABC_MetN_methionine_tr 91.0 0.16 3.5E-06 50.0 2.8 24 196-219 31-54 (233)
419 cd00878 Arf_Arl Arf (ADP-ribos 91.0 0.16 3.4E-06 46.5 2.6 21 199-219 2-22 (158)
420 TIGR03608 L_ocin_972_ABC putat 91.0 0.16 3.6E-06 48.9 2.8 22 197-218 25-46 (206)
421 TIGR02770 nickel_nikD nickel i 91.0 0.16 3.5E-06 49.9 2.7 24 196-219 12-35 (230)
422 TIGR00017 cmk cytidylate kinas 91.0 0.16 3.5E-06 49.2 2.6 22 197-218 3-24 (217)
423 cd02029 PRK_like Phosphoribulo 91.0 0.14 2.9E-06 50.6 2.1 21 198-218 1-21 (277)
424 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 91.0 0.31 6.7E-06 45.9 4.5 22 198-219 7-28 (182)
425 PRK07940 DNA polymerase III su 90.9 0.22 4.9E-06 52.8 3.9 50 169-218 5-58 (394)
426 cd01673 dNK Deoxyribonucleosid 90.9 0.14 2.9E-06 48.9 2.1 22 198-219 1-22 (193)
427 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.9 0.18 3.8E-06 45.5 2.7 24 196-219 26-49 (144)
428 cd03232 ABC_PDR_domain2 The pl 90.9 0.17 3.7E-06 48.1 2.8 23 196-218 33-55 (192)
429 cd00879 Sar1 Sar1 subfamily. 90.9 0.16 3.5E-06 48.2 2.6 24 196-219 19-42 (190)
430 PRK08181 transposase; Validate 90.9 0.19 4.1E-06 50.3 3.2 37 197-235 107-143 (269)
431 cd04131 Rnd Rnd subfamily. Th 90.9 0.34 7.3E-06 45.4 4.7 22 198-219 3-24 (178)
432 cd01876 YihA_EngB The YihA (En 90.9 0.16 3.4E-06 46.8 2.4 20 199-218 2-21 (170)
433 PRK06921 hypothetical protein; 90.9 0.18 3.8E-06 50.7 2.9 38 196-235 117-155 (266)
434 cd03219 ABC_Mj1267_LivG_branch 90.9 0.16 3.5E-06 50.1 2.7 23 196-218 26-48 (236)
435 TIGR02902 spore_lonB ATP-depen 90.9 0.24 5.2E-06 55.1 4.3 45 169-219 65-109 (531)
436 KOG3347 Predicted nucleotide k 90.8 0.16 3.4E-06 44.7 2.1 35 196-237 7-41 (176)
437 PRK11124 artP arginine transpo 90.8 0.17 3.7E-06 50.2 2.8 24 196-219 28-51 (242)
438 COG1123 ATPase components of v 90.8 0.16 3.5E-06 55.1 2.7 22 197-218 318-339 (539)
439 PRK14532 adenylate kinase; Pro 90.8 0.16 3.4E-06 48.2 2.5 20 199-218 3-22 (188)
440 PF13504 LRR_7: Leucine rich r 90.8 0.11 2.3E-06 27.6 0.7 16 461-477 2-17 (17)
441 cd03246 ABCC_Protease_Secretio 90.8 0.18 4E-06 47.0 2.8 22 197-218 29-50 (173)
442 cd01867 Rab8_Rab10_Rab13_like 90.8 0.3 6.6E-06 45.1 4.3 24 196-219 3-26 (167)
443 cd04134 Rho3 Rho3 subfamily. 90.8 0.29 6.3E-06 46.4 4.2 21 198-218 2-22 (189)
444 cd01864 Rab19 Rab19 subfamily. 90.8 0.17 3.7E-06 46.7 2.5 23 196-218 3-25 (165)
445 PLN02165 adenylate isopentenyl 90.8 0.18 3.8E-06 51.6 2.8 24 195-218 42-65 (334)
446 TIGR01189 ccmA heme ABC export 90.8 0.18 3.9E-06 48.3 2.8 24 196-219 26-49 (198)
447 TIGR00041 DTMP_kinase thymidyl 90.7 0.18 3.9E-06 48.1 2.8 23 197-219 4-26 (195)
448 PRK08939 primosomal protein Dn 90.7 0.32 7E-06 49.8 4.7 60 173-236 135-194 (306)
449 PRK13540 cytochrome c biogenes 90.7 0.18 3.9E-06 48.3 2.8 24 196-219 27-50 (200)
450 PF05673 DUF815: Protein of un 90.7 0.18 4E-06 48.8 2.7 52 166-219 24-75 (249)
451 PRK10908 cell division protein 90.7 0.18 3.9E-06 49.3 2.8 23 196-218 28-50 (222)
452 PRK08154 anaerobic benzoate ca 90.6 0.25 5.3E-06 50.9 3.8 24 195-218 132-155 (309)
453 cd01123 Rad51_DMC1_radA Rad51_ 90.6 0.22 4.8E-06 49.1 3.4 44 195-238 18-65 (235)
454 TIGR02528 EutP ethanolamine ut 90.6 0.18 3.9E-06 45.1 2.5 21 199-219 3-23 (142)
455 COG1245 Predicted ATPase, RNas 90.6 0.17 3.7E-06 52.8 2.6 23 196-218 367-389 (591)
456 PRK05416 glmZ(sRNA)-inactivati 90.6 0.21 4.6E-06 50.5 3.2 23 195-217 5-27 (288)
457 cd01874 Cdc42 Cdc42 subfamily. 90.6 0.32 6.9E-06 45.5 4.2 21 198-218 3-23 (175)
458 PRK14730 coaE dephospho-CoA ki 90.6 0.18 3.9E-06 48.0 2.6 22 197-218 2-23 (195)
459 TIGR02324 CP_lyasePhnL phospho 90.6 0.19 4E-06 49.3 2.8 23 197-219 35-57 (224)
460 cd03295 ABC_OpuCA_Osmoprotecti 90.6 0.18 4E-06 50.0 2.8 23 197-219 28-50 (242)
461 TIGR01978 sufC FeS assembly AT 90.6 0.18 4E-06 50.0 2.7 23 197-219 27-49 (243)
462 cd03218 ABC_YhbG The ABC trans 90.6 0.19 4E-06 49.6 2.8 23 196-218 26-48 (232)
463 PRK14950 DNA polymerase III su 90.6 0.24 5.2E-06 55.9 3.9 45 169-218 16-60 (585)
464 PRK11247 ssuB aliphatic sulfon 90.5 0.19 4.1E-06 50.3 2.8 23 196-218 38-60 (257)
465 PRK06835 DNA replication prote 90.5 0.19 4.1E-06 51.9 2.9 38 197-236 184-221 (329)
466 PRK02496 adk adenylate kinase; 90.5 0.2 4.4E-06 47.3 2.9 21 198-218 3-23 (184)
467 PRK14245 phosphate ABC transpo 90.5 0.19 4.1E-06 50.2 2.8 23 196-218 29-51 (250)
468 cd03233 ABC_PDR_domain1 The pl 90.5 0.19 4.1E-06 48.3 2.7 24 196-219 33-56 (202)
469 PRK14531 adenylate kinase; Pro 90.5 0.19 4.2E-06 47.3 2.7 21 198-218 4-24 (183)
470 PRK13539 cytochrome c biogenes 90.5 0.19 4.2E-06 48.4 2.8 24 196-219 28-51 (207)
471 cd03216 ABC_Carb_Monos_I This 90.5 0.2 4.4E-06 46.2 2.8 24 196-219 26-49 (163)
472 PRK13407 bchI magnesium chelat 90.5 0.21 4.5E-06 51.7 3.1 44 169-218 8-51 (334)
473 TIGR00972 3a0107s01c2 phosphat 90.5 0.19 4.1E-06 50.1 2.7 23 196-218 27-49 (247)
474 cd04171 SelB SelB subfamily. 90.5 0.2 4.4E-06 45.9 2.8 21 198-218 2-22 (164)
475 cd03268 ABC_BcrA_bacitracin_re 90.5 0.2 4.2E-06 48.4 2.8 23 196-218 26-48 (208)
476 cd03247 ABCC_cytochrome_bd The 90.5 0.2 4.4E-06 47.0 2.8 23 197-219 29-51 (178)
477 KOG3308 Uncharacterized protei 90.5 0.58 1.2E-05 43.5 5.5 33 195-233 3-35 (225)
478 PRK12724 flagellar biosynthesi 90.4 0.2 4.3E-06 53.0 2.9 24 196-219 223-246 (432)
479 cd03262 ABC_HisP_GlnQ_permease 90.4 0.2 4.2E-06 48.6 2.8 23 196-218 26-48 (213)
480 cd03230 ABC_DR_subfamily_A Thi 90.4 0.2 4.4E-06 46.7 2.8 24 196-219 26-49 (173)
481 cd04138 H_N_K_Ras_like H-Ras/N 90.4 0.18 4E-06 46.0 2.5 22 198-219 3-24 (162)
482 PF00071 Ras: Ras family; Int 90.4 0.19 4.2E-06 46.1 2.6 21 199-219 2-22 (162)
483 cd03214 ABC_Iron-Siderophores_ 90.4 0.2 4.4E-06 47.0 2.8 24 196-219 25-48 (180)
484 TIGR01277 thiQ thiamine ABC tr 90.4 0.19 4.2E-06 48.7 2.7 24 196-219 24-47 (213)
485 TIGR00362 DnaA chromosomal rep 90.4 0.46 1E-05 51.2 5.8 24 196-219 136-159 (405)
486 cd03223 ABCD_peroxisomal_ALDP 90.4 0.21 4.5E-06 46.3 2.8 24 196-219 27-50 (166)
487 PRK09544 znuC high-affinity zi 90.4 0.2 4.3E-06 50.0 2.8 24 196-219 30-53 (251)
488 cd01858 NGP_1 NGP-1. Autoanti 90.4 0.37 8E-06 44.1 4.4 24 196-219 102-125 (157)
489 PRK06305 DNA polymerase III su 90.4 0.27 5.9E-06 53.4 4.0 45 169-218 17-61 (451)
490 PRK07471 DNA polymerase III su 90.4 0.34 7.4E-06 51.0 4.6 46 168-218 18-63 (365)
491 cd03215 ABC_Carb_Monos_II This 90.4 0.2 4.4E-06 47.1 2.7 24 196-219 26-49 (182)
492 cd02032 Bchl_like This family 90.4 0.19 4.1E-06 50.7 2.7 21 198-218 2-22 (267)
493 PF00406 ADK: Adenylate kinase 90.3 0.17 3.8E-06 45.9 2.2 18 201-218 1-18 (151)
494 cd01898 Obg Obg subfamily. Th 90.3 0.19 4.1E-06 46.5 2.5 21 199-219 3-23 (170)
495 PRK14242 phosphate transporter 90.3 0.2 4.3E-06 50.1 2.8 23 196-218 32-54 (253)
496 PRK14247 phosphate ABC transpo 90.3 0.2 4.3E-06 50.0 2.8 23 196-218 29-51 (250)
497 cd03252 ABCC_Hemolysin The ABC 90.3 0.2 4.4E-06 49.5 2.8 23 196-218 28-50 (237)
498 PRK14489 putative bifunctional 90.3 0.48 1E-05 50.1 5.7 25 195-219 204-228 (366)
499 COG4559 ABC-type hemin transpo 90.3 0.21 4.6E-06 46.8 2.6 24 196-219 27-50 (259)
500 cd04124 RabL2 RabL2 subfamily. 90.3 0.2 4.3E-06 46.1 2.5 20 199-218 3-22 (161)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-68 Score=603.67 Aligned_cols=647 Identities=23% Similarity=0.343 Sum_probs=444.6
Q ss_pred hhhhHHHHHHHHhccchHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHhhHhHHH
Q 043964 2 VNAVVSPLLEQLISFSTEEVTQQVKLVKGVEQEVEKLTSHLQTIQAVLNDAEQRQVKEKSIRVWLGRLKDVSYDIENVLD 81 (713)
Q Consensus 2 a~~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~Wl~~l~~~~~d~ed~ld 81 (713)
|++.++..++|+.+ .+.++...+.+.++.+..|+++|..++.+++||+.++.....+..|.+.+++++|++||.++
T Consensus 1 ~~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CCeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667788888 88899999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccCccccchhhHhHHHHHHHHHHHHHHHHHHHhcccccceeecCCCCCCCCCCCc
Q 043964 82 EWITARRRLQMEQNAHSAQKQVSSCFPASSISFKKIILRQDIAVKIKGINKKLGVIATQKDMFKFVESGGASSTRPGRVQ 161 (713)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 161 (713)
.|..+....+..+.-.+. ....+......+|...+...+.+++++-++...++.+..+. . +.... ........++
T Consensus 77 ~~~v~~~~~~~~~~l~~~-~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~-~--~~~~~-~~~~~~~~~e 151 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLSTR-SVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKG-V--FEVVG-ESLDPREKVE 151 (889)
T ss_pred HHHHHHHHHHHhHHhhhh-HHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcccc-c--eeccc-ccccchhhcc
Confidence 999887665433221000 00111111001122233333444455444444444443221 0 11111 0111222344
Q ss_pred ccccCCCCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHH-HHhhCCceeEEEecccccc
Q 043964 162 STSFIDEEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEE-VIRKFDKILWVCVSETFEE 240 (713)
Q Consensus 162 ~~~~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~ 240 (713)
+.+...+.. ||.+..++++++.|+.+ +..++||+||||+||||||+.|+|+.. ++.+||.++||+||++|+.
T Consensus 152 ~~~~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 152 TRPIQSESD-VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred cCCCCcccc-ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 444444445 99999999999999954 348999999999999999999999977 9999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 043964 241 -------------------------------------------------------------------------------- 240 (713)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (713)
T Consensus 225 ~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence
Q ss_pred ------------------------ccccCCCchhchHHHHHHHHHHHhcCCCCchhH-----------------------
Q 043964 241 ------------------------IAFHGRSIEECEKLEQIGQKIASRCKGLPLAAK----------------------- 273 (713)
Q Consensus 241 ------------------------~~f~~~~~~~~~~l~~i~~~i~~~c~GlPlai~----------------------- 273 (713)
++|.... ..++.++++|++|+++|+|||||++
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~ 383 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLK 383 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccc
Confidence 3333322 3445599999999999999999998
Q ss_pred -------------------------------HHhhhccCCCCCccChHHHHHHHHHcCccccCC-CccHHHHHHHHHHHH
Q 043964 274 -------------------------------CFSYCAIFPKDFNIMKEKLITMWMAQGYFSVEQ-DEEVDIIGEEYFNIL 321 (713)
Q Consensus 274 -------------------------------cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~-~~~~e~~~~~~~~eL 321 (713)
||+|||+|||||+|++++|+.+||||||+.... +..+++.|++|+.+|
T Consensus 384 s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 384 SSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 999999999999999999999999999998844 578999999999999
Q ss_pred HhCcCCcccccCCCCceeEEEeChHHHHHHHHhhc-----cccceeecC-CcccccccccCCCceEEEEEEecCCCCCCc
Q 043964 322 ATHSFFQEFKKDDDNLIVACKMHDIVHDFAQFVSQ-----NECSSMEIN-GSKEHNAINSLDKKVCHLMLIIGEGASFPV 395 (713)
Q Consensus 322 ~~~~ll~~~~~~~~~~~~~~~mhdlv~dla~~i~~-----~e~~~~~~~-~~~~~~~~~~~~~~~r~lsl~~~~~~~~~~ 395 (713)
+.+++++..... ++..+|+|||+||++|.++++ .++.+.... +....+. ...+..+|++++.++.....+
T Consensus 464 V~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~-~~~~~~~rr~s~~~~~~~~~~- 539 (889)
T KOG4658|consen 464 VRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQ-VKSWNSVRRMSLMNNKIEHIA- 539 (889)
T ss_pred HHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcccccc-ccchhheeEEEEeccchhhcc-
Confidence 999999987654 666789999999999999999 555444432 2222211 223578999999998876533
Q ss_pred cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccc
Q 043964 396 STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK 475 (713)
Q Consensus 396 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~ 475 (713)
...++++|++|.+.++.. ....+...+|..++.||||||++|.- ..++|++|+.|.|||||+|+++. +..
T Consensus 540 ~~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~-----l~~LP~~I~~Li~LryL~L~~t~-I~~ 609 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSS-----LSKLPSSIGELVHLRYLDLSDTG-ISH 609 (889)
T ss_pred CCCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCc-----cCcCChHHhhhhhhhcccccCCC-ccc
Confidence 334567899999998841 13445677799999999999998763 78999999999999999999999 999
Q ss_pred cCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCccc---ccCcCCCCCCcCCceecCCC--CcccC
Q 043964 476 LPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMP---AGIARLTSLRTFDEFHVSRG--KAVDG 550 (713)
Q Consensus 476 lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p---~~i~~l~~L~~L~~~~~~~~--~ei~~ 550 (713)
+|.++++|+.|++|++..+..+..+|..+..|++||+|.+.... ...-. ..+.+|++|+.|.....+.. ..+.+
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~ 688 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLG 688 (889)
T ss_pred cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhh
Confidence 99999999999999999998777777777779999999988753 11112 22344444554444332220 00000
Q ss_pred -------------CCCCCccCCccccCCCCCcEEEeccCCCCCCC----CC--CC-CCCCcceeeeccCccceEeCcccc
Q 043964 551 -------------HKGCNNVFPNWMMSLTNPRSLELILCENCNQL----PP--LG-ILPSLEKVIITYMISVKRVGNEFL 610 (713)
Q Consensus 551 -------------~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l----~~--l~-~l~~L~~L~L~~~~~l~~~~~~~~ 610 (713)
.+......+..+..+.+|+.|.+.+|...+.. .. .. .+|+|..+.+.+|..++.....
T Consensus 689 ~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-- 766 (889)
T KOG4658|consen 689 MTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL-- 766 (889)
T ss_pred hHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh--
Confidence 00111223344445666666666666543211 11 11 1344555555555444332211
Q ss_pred CCcccccCcccceeecccccccccccccccccc--ccccccccccccc-cccccccCC---CCCCCCCCCCCccEEEEEc
Q 043964 611 GIEIIIAFPKLKSLTISWMLELKEWNYGITRTG--NAFINIMPRLSSL-TIDSCPKLK---ALPDHFHQTTTLKELIIRS 684 (713)
Q Consensus 611 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~~p~L~~L-~l~~c~~L~---~lp~~l~~l~~L~~L~i~~ 684 (713)
...|+|+.|.+..|..+++......... ......|++++.+ .+.+.+.+. ..|.. .+.|+.+.+.
T Consensus 767 -----~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~---~~~l~~~~ve- 837 (889)
T KOG4658|consen 767 -----LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS---FLKLEELIVE- 837 (889)
T ss_pred -----hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC---ccchhheehh-
Confidence 1357888888887776665443222100 0012244455555 244333333 22322 2347777777
Q ss_pred CCchhhH
Q 043964 685 NCGLLEE 691 (713)
Q Consensus 685 ~C~~l~~ 691 (713)
.||++..
T Consensus 838 ~~p~l~~ 844 (889)
T KOG4658|consen 838 ECPKLGK 844 (889)
T ss_pred cCccccc
Confidence 7777653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.9e-46 Score=443.55 Aligned_cols=522 Identities=21% Similarity=0.261 Sum_probs=360.1
Q ss_pred HHHHHHHHHHHHHHhcccccceeecCC-------CCCCCCCCCcccccCCCCcEEeccchHHHHHHHHhCCCCccCCCeE
Q 043964 125 VKIKGINKKLGVIATQKDMFKFVESGG-------ASSTRPGRVQSTSFIDEEEIYGRVGEKNELLSKLLCESSEQQKGLH 197 (713)
Q Consensus 125 ~~i~~i~~~l~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~ 197 (713)
.+++++++.+.+++.... +.+..... ...+....-...+..+..++||++++++++.++|..+. ++++
T Consensus 134 ~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----CceE
Confidence 467888888888876533 11111000 00011111112233345679999999999999886543 3699
Q ss_pred EEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe---ccc-----------cc------------------------
Q 043964 198 IISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV---SET-----------FE------------------------ 239 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~------------------------ 239 (713)
|||||||||+||||||+++|+ ++..+|+..+|+.- +.. ++
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~ 286 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL 286 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH
Confidence 999999999999999999999 68889998887631 110 00
Q ss_pred -c--------------------------------------------------------------------------cccc
Q 043964 240 -E--------------------------------------------------------------------------IAFH 244 (713)
Q Consensus 240 -~--------------------------------------------------------------------------~~f~ 244 (713)
. +||+
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 0 5565
Q ss_pred CCCchhchHHHHHHHHHHHhcCCCCchhH-----------------------------------------------HHhh
Q 043964 245 GRSIEECEKLEQIGQKIASRCKGLPLAAK-----------------------------------------------CFSY 277 (713)
Q Consensus 245 ~~~~~~~~~l~~i~~~i~~~c~GlPlai~-----------------------------------------------cfl~ 277 (713)
... .++.+++++++|+++|+|+|||++ ||++
T Consensus 367 ~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ 444 (1153)
T PLN03210 367 KNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRH 444 (1153)
T ss_pred CCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhhe
Confidence 432 345789999999999999999998 9999
Q ss_pred hccCCCCCccChHHHHHHHHHcCccccCCCccHHHHHHHHHHHHHhCcCCcccccCCCCceeEEEeChHHHHHHHHhhcc
Q 043964 278 CAIFPKDFNIMKEKLITMWMAQGYFSVEQDEEVDIIGEEYFNILATHSFFQEFKKDDDNLIVACKMHDIVHDFAQFVSQN 357 (713)
Q Consensus 278 ~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~e~~~~~~~~eL~~~~ll~~~~~~~~~~~~~~~mhdlv~dla~~i~~~ 357 (713)
+|.|+.+..++ .+..|.|.+.+.. +..++.|+++||++.... .++|||++|+||+.++++
T Consensus 445 ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~~-------~~~MHdLl~~~~r~i~~~ 504 (1153)
T PLN03210 445 IACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIHVRED-------IVEMHSLLQEMGKEIVRA 504 (1153)
T ss_pred ehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEEEcCC-------eEEhhhHHHHHHHHHHHh
Confidence 99999886553 4677888765432 223889999999987432 489999999999999876
Q ss_pred cc-------ceeecCCcccccccccCCCceEEEEEEecCCCCC---CccccCCCceeEEEecCCcCCCc-chhh------
Q 043964 358 EC-------SSMEINGSKEHNAINSLDKKVCHLMLIIGEGASF---PVSTCRVKRMRSLFIGGNMLDNS-SLNG------ 420 (713)
Q Consensus 358 e~-------~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~-~~~~------ 420 (713)
+. +..................+++++++.......+ ...|..+++|+.|.+..+..+.. ....
T Consensus 505 ~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~ 584 (1153)
T PLN03210 505 QSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF 584 (1153)
T ss_pred hcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcch
Confidence 53 1111100000000112245677777655443321 34566777777777754321100 0000
Q ss_pred -----------------hHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCC
Q 043964 421 -----------------KMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCEL 483 (713)
Q Consensus 421 -----------------~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L 483 (713)
..++..| .+.+|+.|+|+++. +..+|..+..+++|++|+|+++..+..+|. ++.+
T Consensus 585 ~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~------l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l 656 (1153)
T PLN03210 585 DYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK------LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMA 656 (1153)
T ss_pred hhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc------ccccccccccCCCCCEEECCCCCCcCcCCc-cccC
Confidence 0011112 34677777777777 677888888999999999998877888885 8889
Q ss_pred CCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccC----------CCC
Q 043964 484 YNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDG----------HKG 553 (713)
Q Consensus 484 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~----------~~~ 553 (713)
++|++|++++|..+..+|..+++|++|++|++++|..+..+|..+ ++++|+.|.+.+|.....+.. ..+
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 999999999998899999999999999999999999899999876 788898888877654321110 111
Q ss_pred CCccCCccc------------------------------cCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccc
Q 043964 554 CNNVFPNWM------------------------------MSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISV 602 (713)
Q Consensus 554 ~~~~~p~~~------------------------------~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l 602 (713)
....+|..+ ..+++|+.|+|++|..+..+|. +++|++|+.|+|++|..+
T Consensus 736 ~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 736 AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence 112233221 1235677888888877777877 888899999999988888
Q ss_pred eEeCccccCCcccccCcccceeecccccccccccccc------------ccccccccccccccccccccccccCCCCCCC
Q 043964 603 KRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGI------------TRTGNAFINIMPRLSSLTIDSCPKLKALPDH 670 (713)
Q Consensus 603 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~------------~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~ 670 (713)
+.++... .+++|+.|++++|..+..++... -...|.....+++|+.|++.+|++|+.+|..
T Consensus 816 ~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 816 ETLPTGI-------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred CeeCCCC-------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 7765432 46788888888877766543211 0112334567899999999999999999998
Q ss_pred CCCCCCccEEEEEcCCchhhHh
Q 043964 671 FHQTTTLKELIIRSNCGLLEEC 692 (713)
Q Consensus 671 l~~l~~L~~L~i~~~C~~l~~~ 692 (713)
+..+++|+.++++ +|+.|.+.
T Consensus 889 ~~~L~~L~~L~l~-~C~~L~~~ 909 (1153)
T PLN03210 889 ISKLKHLETVDFS-DCGALTEA 909 (1153)
T ss_pred cccccCCCeeecC-CCcccccc
Confidence 8899999999999 99988653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.85 E-value=1e-21 Score=201.86 Aligned_cols=128 Identities=40% Similarity=0.699 Sum_probs=101.3
Q ss_pred ccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecccccc-------------
Q 043964 174 RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSETFEE------------- 240 (713)
Q Consensus 174 ~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~------------- 240 (713)
||.++++|.+.|.... ++.++|+|+||||+||||||+.+|++..++++|+.++||.+++..+.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 6789999999999643 37999999999999999999999998889999999999998876543
Q ss_pred --------------------------------------------------------------------------------
Q 043964 241 -------------------------------------------------------------------------------- 240 (713)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (713)
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ------------ccccCCCchhchHHHHHHHHHHHhcCCCCchhH-----------------------------------
Q 043964 241 ------------IAFHGRSIEECEKLEQIGQKIASRCKGLPLAAK----------------------------------- 273 (713)
Q Consensus 241 ------------~~f~~~~~~~~~~l~~i~~~i~~~c~GlPlai~----------------------------------- 273 (713)
.++... ....+.+++++++|+++|+|+|||++
T Consensus 157 L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp --HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111111 01224456789999999999999997
Q ss_pred ------------------HHhhhccCCCCCccChHHHHHHHHHcCccccCC
Q 043964 274 ------------------CFSYCAIFPKDFNIMKEKLITMWMAQGYFSVEQ 306 (713)
Q Consensus 274 ------------------cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~ 306 (713)
||+|||+||+++.|+++.|+++|++||||...+
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 999999999999999999999999999997653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=1.5e-20 Score=225.86 Aligned_cols=279 Identities=21% Similarity=0.262 Sum_probs=146.7
Q ss_pred ceEEEEEEecCCC-CCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccch----------
Q 043964 379 KVCHLMLIIGEGA-SFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWY---------- 447 (713)
Q Consensus 379 ~~r~lsl~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~---------- 447 (713)
+++.+.+..+.+. ..+..+..+++|++|++++|.+ .+.++..++..+++||+|+|++|.+.+..
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-----~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-----SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-----CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence 4666666555433 2244556667777777776643 12334444556666666666666532100
Q ss_pred -------hhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCccc
Q 043964 448 -------FILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDS 520 (713)
Q Consensus 448 -------~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 520 (713)
....+|..++++.+|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 0113344444444555555544442234444444455555555544443334444444555555555544443
Q ss_pred CCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccC
Q 043964 521 LGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYM 599 (713)
Q Consensus 521 l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 599 (713)
...+|..++++++|++|++..+... ..+|..+..+++|+.|+|++|.....+|. +..+++|+.|++++|
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLT----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceec----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 3444444445555555544443321 22455555566666666665544344443 555566666666554
Q ss_pred ccceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccE
Q 043964 600 ISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKE 679 (713)
Q Consensus 600 ~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~ 679 (713)
.-...++.. ...+++|+.|++.++.-....+ .....+++|+.|++++|.....+|..+..+++|+.
T Consensus 295 ~l~~~~p~~------~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 295 SLSGEIPEL------VIQLQNLEILHLFSNNFTGKIP--------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360 (968)
T ss_pred eeccCCChh------HcCCCCCcEEECCCCccCCcCC--------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcE
Confidence 311111111 1245667777766543222221 22347888999999988666678887888889999
Q ss_pred EEEEcCCc
Q 043964 680 LIIRSNCG 687 (713)
Q Consensus 680 L~i~~~C~ 687 (713)
|+++ +|.
T Consensus 361 L~Ls-~n~ 367 (968)
T PLN00113 361 LDLS-TNN 367 (968)
T ss_pred EECC-CCe
Confidence 9998 553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=2.1e-20 Score=224.46 Aligned_cols=279 Identities=19% Similarity=0.226 Sum_probs=165.5
Q ss_pred CceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchh
Q 043964 378 KKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIE 457 (713)
Q Consensus 378 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 457 (713)
.+++++.+.++..... .....+++|++|++++|.+. .. .+..+..+++|++|+|++|.+ ...+|..++
T Consensus 118 ~~L~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~-----~~-~p~~~~~l~~L~~L~L~~n~l-----~~~~p~~~~ 185 (968)
T PLN00113 118 SSLRYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLS-----GE-IPNDIGSFSSLKVLDLGGNVL-----VGKIPNSLT 185 (968)
T ss_pred CCCCEEECcCCccccc-cCccccCCCCEEECcCCccc-----cc-CChHHhcCCCCCEEECccCcc-----cccCChhhh
Confidence 4555666555544321 11134566667766666421 12 233467778888888888774 335677788
Q ss_pred ccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcC
Q 043964 458 KLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTF 537 (713)
Q Consensus 458 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 537 (713)
++++|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 88888888888877455677778888888888888877555777778888888888888876666777777788888888
Q ss_pred CceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCcccc------
Q 043964 538 DEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFL------ 610 (713)
Q Consensus 538 ~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~------ 610 (713)
++..+... ..+|.++..+++|+.|+|++|.....+|. +.++++|+.|+++++.....++..+.
T Consensus 266 ~L~~n~l~----------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 266 FLYQNKLS----------GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred ECcCCeee----------ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 77665432 12444444555555555555543333333 44455555555544321111110000
Q ss_pred ----------C--CcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCcc
Q 043964 611 ----------G--IEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLK 678 (713)
Q Consensus 611 ----------~--~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~ 678 (713)
+ ......+++|+.|+++++.-...++ .....+++|+.|++.+|+....+|..+..+++|+
T Consensus 336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p--------~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP--------EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC--------hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 0 0001134455555555432111111 1223566778888887766566777777788888
Q ss_pred EEEEEcCCc
Q 043964 679 ELIIRSNCG 687 (713)
Q Consensus 679 ~L~i~~~C~ 687 (713)
.|++. +|.
T Consensus 408 ~L~L~-~n~ 415 (968)
T PLN00113 408 RVRLQ-DNS 415 (968)
T ss_pred EEECc-CCE
Confidence 88888 664
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=3.9e-19 Score=213.78 Aligned_cols=291 Identities=23% Similarity=0.242 Sum_probs=204.6
Q ss_pred CCCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc
Q 043964 376 LDKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN 455 (713)
Q Consensus 376 ~~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 455 (713)
.+.++|.+.+..+....+|..+ ...+|+.|.+.++.+ .. ++..+..+++|+.|+|+++.. +..+| .
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l------~~-L~~~~~~l~~Lk~L~Ls~~~~-----l~~ip-~ 652 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL------EK-LWDGVHSLTGLRNIDLRGSKN-----LKEIP-D 652 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc------cc-cccccccCCCCCEEECCCCCC-----cCcCC-c
Confidence 3567888888877777666655 468889998888753 22 222256788899999988763 55565 4
Q ss_pred hhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCc------
Q 043964 456 IEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIA------ 529 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~------ 529 (713)
++.+++|++|+|++|..+..+|.+++.|++|+.|++++|..++.+|..+ ++++|++|++++|..+..+|....
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeee
Confidence 7888889999998887788888888889999999999888888888866 788888888888876655553211
Q ss_pred -------------CCCCCCcCCceecCCCC--------------------cccCCC-CCCccCCccccCCCCCcEEEecc
Q 043964 530 -------------RLTSLRTFDEFHVSRGK--------------------AVDGHK-GCNNVFPNWMMSLTNPRSLELIL 575 (713)
Q Consensus 530 -------------~l~~L~~L~~~~~~~~~--------------------ei~~~~-~~~~~~p~~~~~l~~L~~L~L~~ 575 (713)
.+++|+.|.+..+.... .+.-.. .....+|.+++.+++|+.|+|++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 23333333333211000 000000 01234788999999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeeeccCccceEeCccccC-------------C-cccccCcccceeecccccccccccccccc
Q 043964 576 CENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLG-------------I-EIIIAFPKLKSLTISWMLELKEWNYGITR 641 (713)
Q Consensus 576 ~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-------------~-~~~~~f~~L~~L~l~~~~~l~~~~~~~~~ 641 (713)
|..+..+|....+++|+.|++++|..+..++..... . .....+++|+.|++.+|+++..++....
T Consensus 812 C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~- 890 (1153)
T PLN03210 812 CINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS- 890 (1153)
T ss_pred CCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc-
Confidence 999999998668999999999999877655331100 0 1124578999999999999988776544
Q ss_pred ccccccccccccccccccccccCCCCCCCC-------------CCCCCccEEEEEcCCchhh
Q 043964 642 TGNAFINIMPRLSSLTIDSCPKLKALPDHF-------------HQTTTLKELIIRSNCGLLE 690 (713)
Q Consensus 642 ~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l-------------~~l~~L~~L~i~~~C~~l~ 690 (713)
.+++|+.|++++|+.|..++..- ..+++...+.+. ||.++.
T Consensus 891 -------~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~-nC~~L~ 944 (1153)
T PLN03210 891 -------KLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFI-NCFNLD 944 (1153)
T ss_pred -------cccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccc-cccCCC
Confidence 78999999999999998654310 123334556676 887775
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.2e-21 Score=201.62 Aligned_cols=289 Identities=23% Similarity=0.245 Sum_probs=200.1
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
..++.||++.++...++...+..++.||++.+..|.+.++. +|++ +-.+.-|.+|||++|+ +.+.|..+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG----iP~d-iF~l~dLt~lDLShNq------L~EvP~~L 122 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG----IPTD-IFRLKDLTILDLSHNQ------LREVPTNL 122 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC----CCch-hcccccceeeecchhh------hhhcchhh
Confidence 45678888888887776777888999999999988765543 3555 4479999999999999 88999999
Q ss_pred hccCcCCccccCCcccccccCcc-ccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCC
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLR 535 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~ 535 (713)
..-+++-+|+||+|. |+.+|.+ +-+|..|-+|||++|+ ++.+|+.+..|.+|+.|.|++|.....--..+..|++|+
T Consensus 123 E~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 999999999999999 9999976 4578999999999998 999999999999999999999965433223445688888
Q ss_pred cCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccc-----
Q 043964 536 TFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEF----- 609 (713)
Q Consensus 536 ~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~----- 609 (713)
+|++++.... ...+|..+-.+.||..++|+.| ++..+|. +-++++|+.|+|++.. ++.+.-..
T Consensus 201 vLhms~TqRT---------l~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~ 269 (1255)
T KOG0444|consen 201 VLHMSNTQRT---------LDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWEN 269 (1255)
T ss_pred hhhcccccch---------hhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhh
Confidence 9988876543 2447888888888888888876 4555555 7778888888888643 22221100
Q ss_pred -----------cCC-cccccCcccceeeccccc-cccccccccc---------------ccccccccccccccccccccc
Q 043964 610 -----------LGI-EIIIAFPKLKSLTISWML-ELKEWNYGIT---------------RTGNAFINIMPRLSSLTIDSC 661 (713)
Q Consensus 610 -----------~~~-~~~~~f~~L~~L~l~~~~-~l~~~~~~~~---------------~~~~~~~~~~p~L~~L~l~~c 661 (713)
... .....+++|+.|...+.. +.+.++...+ ...|.....++.|+.|.++.+
T Consensus 270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc
Confidence 000 001133444444433211 0111111111 112333445666777776643
Q ss_pred ccCCCCCCCCCCCCCccEEEEEcCCchhhH
Q 043964 662 PKLKALPDHFHQTTTLKELIIRSNCGLLEE 691 (713)
Q Consensus 662 ~~L~~lp~~l~~l~~L~~L~i~~~C~~l~~ 691 (713)
.|.++|..|.-++.|+.|+++ +-|+|.-
T Consensus 350 -rLiTLPeaIHlL~~l~vLDlr-eNpnLVM 377 (1255)
T KOG0444|consen 350 -RLITLPEAIHLLPDLKVLDLR-ENPNLVM 377 (1255)
T ss_pred -ceeechhhhhhcCCcceeecc-CCcCccC
Confidence 566677777777777777777 5565543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=1.7e-18 Score=178.79 Aligned_cols=274 Identities=20% Similarity=0.229 Sum_probs=174.6
Q ss_pred eEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhcc
Q 043964 380 VCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKL 459 (713)
Q Consensus 380 ~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L 459 (713)
+.-+.++++.....|..+...+++-.|++++|. +..+|...|.++.-|-+|||++|. +..+|+.+..|
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~------IetIPn~lfinLtDLLfLDLS~Nr------Le~LPPQ~RRL 172 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN------IETIPNSLFINLTDLLFLDLSNNR------LEMLPPQIRRL 172 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCc------cccCCchHHHhhHhHhhhccccch------hhhcCHHHHHH
Confidence 334444555544445555566666666666665 344555666666667777777777 66677777777
Q ss_pred CcCCccccCCcccccccC-ccccCCCCCcEEeccCccC-ccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcC
Q 043964 460 IHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWY-LKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTF 537 (713)
Q Consensus 460 ~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 537 (713)
.+|+.|.|++|. +...- ..+..++.|++|.+++++. +..+|.++..|.+|+.++++.| .+..+|+-+-++.+|+.|
T Consensus 173 ~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 173 SMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRL 250 (1255)
T ss_pred hhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhhee
Confidence 777777776665 22100 1122344455555554432 2345666666677777777665 556666666667777777
Q ss_pred CceecCCCC------c------ccCCCCCCccCCccccCCCCCcEEEeccCC-CCCCCCC-CCCCCCcceeeeccCccce
Q 043964 538 DEFHVSRGK------A------VDGHKGCNNVFPNWMMSLTNPRSLELILCE-NCNQLPP-LGILPSLEKVIITYMISVK 603 (713)
Q Consensus 538 ~~~~~~~~~------e------i~~~~~~~~~~p~~~~~l~~L~~L~L~~~~-~~~~l~~-l~~l~~L~~L~L~~~~~l~ 603 (713)
+++.+...+ + +.-+.+....+|..++.+++|+.|.+.+|+ ..+.+|+ +|+|..|+.+...+ ..|+
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LE 329 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLE 329 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccc
Confidence 766655432 0 111223345689999999999999998885 3568898 99999999998876 3355
Q ss_pred EeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEE
Q 043964 604 RVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIR 683 (713)
Q Consensus 604 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~ 683 (713)
.++... ..+++|+.|.|+. ..|-.++.... .+|-|+.|++..+|+|..-|.--..-++|+.-+|.
T Consensus 330 lVPEgl------cRC~kL~kL~L~~-NrLiTLPeaIH--------lL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 330 LVPEGL------CRCVKLQKLKLDH-NRLITLPEAIH--------LLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred cCchhh------hhhHHHHHhcccc-cceeechhhhh--------hcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 555443 2678999999975 44555555544 89999999999999999776422222456655554
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=2.3e-18 Score=169.44 Aligned_cols=276 Identities=21% Similarity=0.281 Sum_probs=183.7
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
.+...|+....+..+.+|+.+..+.+|..|.+..|.+ .. +|+ |.++..|..|.+..|. ++.+|..+
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki------~~-lPe-f~gcs~L~Elh~g~N~------i~~lpae~ 247 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI------RF-LPE-FPGCSLLKELHVGENQ------IEMLPAEH 247 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc------cc-CCC-CCccHHHHHHHhcccH------HHhhHHHH
Confidence 4456677777777777788888888888888888863 22 343 7888888888888888 78888766
Q ss_pred h-ccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCc------------
Q 043964 457 E-KLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGR------------ 523 (713)
Q Consensus 457 ~-~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~------------ 523 (713)
+ +|.+|.+|||+.|+ ++++|.+++.|++|+.||+++|. +..+|.++++| .|+.|-+.||..-..
T Consensus 248 ~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEV 324 (565)
T ss_pred hcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHH
Confidence 6 78899999999988 89999989999999999999887 88899989998 888888887742100
Q ss_pred -------------------------cc----ccCcCCCCCCcCCceecCCCC---c----------------------cc
Q 043964 524 -------------------------MP----AGIARLTSLRTFDEFHVSRGK---A----------------------VD 549 (713)
Q Consensus 524 -------------------------~p----~~i~~l~~L~~L~~~~~~~~~---e----------------------i~ 549 (713)
.| +.+..+.+.++|....-.... | +.
T Consensus 325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elP 404 (565)
T KOG0472|consen 325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELP 404 (565)
T ss_pred HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhh
Confidence 00 001122333333332211111 0 00
Q ss_pred C--------------CCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcc
Q 043964 550 G--------------HKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEI 614 (713)
Q Consensus 550 ~--------------~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 614 (713)
. ..+.....|..+..+++|+.|+|++| .+.++|. ++.+..|+.|+++.. ....++.-.+
T Consensus 405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y---- 478 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLY---- 478 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHh----
Confidence 0 01122334556668889999999887 6677887 888888999888752 1222221111
Q ss_pred cccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCC
Q 043964 615 IIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNC 686 (713)
Q Consensus 615 ~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C 686 (713)
....|+.+-.++ ..+.++ .+.....|.+|..|++.++ .+..+|..++++++|++|++.+|.
T Consensus 479 --~lq~lEtllas~-nqi~~v-------d~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 479 --ELQTLETLLASN-NQIGSV-------DPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred --hHHHHHHHHhcc-cccccc-------ChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 111223322222 122222 2333668999999999987 788899999999999999999443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=1.6e-18 Score=170.44 Aligned_cols=260 Identities=22% Similarity=0.263 Sum_probs=207.4
Q ss_pred EEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCc
Q 043964 382 HLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIH 461 (713)
Q Consensus 382 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~ 461 (713)
.+.+.++....+.....++..+.+|.+..|.+ .. .+..+..+..+..|+.++++ +.++|+.++.+..
T Consensus 49 ~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l------~~-lp~aig~l~~l~~l~vs~n~------ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 49 KLILSHNDLEVLREDLKNLACLTVLNVHDNKL------SQ-LPAAIGELEALKSLNVSHNK------LSELPEQIGSLIS 115 (565)
T ss_pred hhhhccCchhhccHhhhcccceeEEEeccchh------hh-CCHHHHHHHHHHHhhcccch------HhhccHHHhhhhh
Confidence 34455555555566777788888888888863 22 23336677788888999988 7889999999999
Q ss_pred CCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCcee
Q 043964 462 LKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFH 541 (713)
Q Consensus 462 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 541 (713)
|+.|+.+++. +..+|++|+.+..|+.|+..+|+ +..+|.++.++.+|..|++.++ .+..+|+..-+++.|++|+...
T Consensus 116 l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 116 LVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch
Confidence 9999999988 88999999999999999998887 8889999999999999999888 5556666555699999998655
Q ss_pred cCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCcccccCccc
Q 043964 542 VSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKL 621 (713)
Q Consensus 542 ~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L 621 (713)
+- -..+|..++.+.+|..|+|..| .+..+|.++.+..|+.|+++. ..++.++.+. ...+++|
T Consensus 193 N~-----------L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpae~-----~~~L~~l 254 (565)
T KOG0472|consen 193 NL-----------LETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPAEH-----LKHLNSL 254 (565)
T ss_pred hh-----------hhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHHHH-----hcccccc
Confidence 43 2458999999999999999988 677899999999999999875 2344443332 2378999
Q ss_pred ceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 622 KSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 622 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
..|++++ .++++.+...- -+.+|++|+++++ .+.++|..++++ .|+.|.+. +-|
T Consensus 255 ~vLDLRd-Nklke~Pde~c--------lLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~le-GNP 308 (565)
T KOG0472|consen 255 LVLDLRD-NKLKEVPDEIC--------LLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALE-GNP 308 (565)
T ss_pred eeeeccc-cccccCchHHH--------HhhhhhhhcccCC-ccccCCcccccc-eeeehhhc-CCc
Confidence 9999998 46888777644 7889999999997 788999999999 99999999 555
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=2.2e-16 Score=162.39 Aligned_cols=226 Identities=21% Similarity=0.277 Sum_probs=127.4
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCc-chhccCcCCccccCCccccccc-CccccCCCCCcEEeccCccCccccchh-
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKYLNLSCLTSIRKL-PEPLCELYNLEKLDISHCWYLKELPEG- 503 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~- 503 (713)
|..+.+|-+|.|+.|. +..+|. .+.+|++|+.|+|..|. |... ...+..|.+||.|.+..|. +..+-++
T Consensus 193 F~~lnsL~tlkLsrNr------ittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~ 264 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNR------ITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGA 264 (873)
T ss_pred ccccchheeeecccCc------ccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcC-cccccCcc
Confidence 4455555555555555 445543 34446666666666655 4433 2345556666666666555 5555544
Q ss_pred hccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCC
Q 043964 504 IGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLP 583 (713)
Q Consensus 504 i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 583 (713)
+..|.++++|+|..|.....-..++-.|++|+.|+++.+.... .-++.....++|..|+|++| .+..++
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r----------ih~d~WsftqkL~~LdLs~N-~i~~l~ 333 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR----------IHIDSWSFTQKLKELDLSSN-RITRLD 333 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe----------eecchhhhcccceeEecccc-ccccCC
Confidence 4556677777777764333333456677778888777765431 12333345677778888777 445555
Q ss_pred C--CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccccccccccccccccccccccccccccccccccc
Q 043964 584 P--LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSC 661 (713)
Q Consensus 584 ~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 661 (713)
+ +..|..|+.|.|++. ++.++.+.. ..++.+|++|+|+... -.|...+. ......+|+|++|.+.++
T Consensus 334 ~~sf~~L~~Le~LnLs~N-si~~l~e~a-----f~~lssL~~LdLr~N~--ls~~IEDa---a~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHN-SIDHLAEGA-----FVGLSSLHKLDLRSNE--LSWCIEDA---AVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred hhHHHHHHHhhhhccccc-chHHHHhhH-----HHHhhhhhhhcCcCCe--EEEEEecc---hhhhccchhhhheeecCc
Confidence 4 666677777777652 233332221 1255677777776422 22332221 111224777777777776
Q ss_pred ccCCCCCC-CCCCCCCccEEEEE
Q 043964 662 PKLKALPD-HFHQTTTLKELIIR 683 (713)
Q Consensus 662 ~~L~~lp~-~l~~l~~L~~L~i~ 683 (713)
+++++|. .+..+++|++|++.
T Consensus 403 -qlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 403 -QLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred -eeeecchhhhccCcccceecCC
Confidence 6777764 34566777777776
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=8e-17 Score=140.57 Aligned_cols=165 Identities=23% Similarity=0.305 Sum_probs=132.9
Q ss_pred cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccc
Q 043964 396 STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK 475 (713)
Q Consensus 396 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~ 475 (713)
.+..+++...|.+++|.+. .+++. +..+.+|.+|++.+++ ++++|.+|+.|++||.|++.-|. +..
T Consensus 28 gLf~~s~ITrLtLSHNKl~------~vppn-ia~l~nlevln~~nnq------ie~lp~~issl~klr~lnvgmnr-l~~ 93 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT------VVPPN-IAELKNLEVLNLSNNQ------IEELPTSISSLPKLRILNVGMNR-LNI 93 (264)
T ss_pred cccchhhhhhhhcccCcee------ecCCc-HHHhhhhhhhhcccch------hhhcChhhhhchhhhheecchhh-hhc
Confidence 3445777788888888632 22333 6788899999999999 88999999999999999999888 889
Q ss_pred cCccccCCCCCcEEeccCccCc-cccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCC
Q 043964 476 LPEPLCELYNLEKLDISHCWYL-KELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGC 554 (713)
Q Consensus 476 lp~~i~~L~~L~~L~l~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~ 554 (713)
+|..+|.++-|++||+..++.- ..+|..+..|+.|+-|++++| ....+|..+++|++||.|.+..+....
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~-------- 164 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS-------- 164 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh--------
Confidence 9999999999999999887632 458888888999999999988 567889999999999999887765443
Q ss_pred CccCCccccCCCCCcEEEeccCCCCCCCCC-CCC
Q 043964 555 NNVFPNWMMSLTNPRSLELILCENCNQLPP-LGI 587 (713)
Q Consensus 555 ~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~ 587 (713)
+|..++.++.|+.|.+.+| .+..+|+ +++
T Consensus 165 ---lpkeig~lt~lrelhiqgn-rl~vlppel~~ 194 (264)
T KOG0617|consen 165 ---LPKEIGDLTRLRELHIQGN-RLTVLPPELAN 194 (264)
T ss_pred ---CcHHHHHHHHHHHHhcccc-eeeecChhhhh
Confidence 8888889999999999988 4555664 443
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.52 E-value=2.2e-14 Score=147.92 Aligned_cols=243 Identities=23% Similarity=0.251 Sum_probs=162.0
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccC-c
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLP-E 478 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp-~ 478 (713)
.+..++|++++|.+ .++-..+|.++++|+.+.+.+|. +..+|.......||+.|+|.+|. |.++- +
T Consensus 77 p~~t~~LdlsnNkl------~~id~~~f~nl~nLq~v~l~~N~------Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se 143 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKL------SHIDFEFFYNLPNLQEVNLNKNE------LTRIPRFGHESGHLEKLDLRHNL-ISSVTSE 143 (873)
T ss_pred ccceeeeecccccc------ccCcHHHHhcCCcceeeeeccch------hhhcccccccccceeEEeeeccc-cccccHH
Confidence 35678899999875 33345668899999999999999 88899877778889999999998 77665 5
Q ss_pred cccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCcc
Q 043964 479 PLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNV 557 (713)
Q Consensus 479 ~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~ 557 (713)
++..++.|++|||+.|. +.++|.. +..=.++++|+|++|.....--..+..+.+|-+|.+..+....
T Consensus 144 ~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt----------- 211 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT----------- 211 (873)
T ss_pred HHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-----------
Confidence 67888999999999987 7777753 4555689999999996554444667888899999988776543
Q ss_pred CCcc-ccCCCCCcEEEeccCCCCCC--CCCCCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccc
Q 043964 558 FPNW-MMSLTNPRSLELILCENCNQ--LPPLGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKE 634 (713)
Q Consensus 558 ~p~~-~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 634 (713)
+|.. +..|++|+.|+|..|. ++. .-.+..||+|+.|.|....--+.-+..|+ ++.+++.|+|.. .++..
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy------~l~kme~l~L~~-N~l~~ 283 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY------GLEKMEHLNLET-NRLQA 283 (873)
T ss_pred cCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCccee------eecccceeeccc-chhhh
Confidence 6654 4459999999998874 222 22377888888888875332111122222 455666666653 22222
Q ss_pred cccccccccccccccccccccccccccccCCCC-CCCCCCCCCccEEEEE
Q 043964 635 WNYGITRTGNAFINIMPRLSSLTIDSCPKLKAL-PDHFHQTTTLKELIIR 683 (713)
Q Consensus 635 ~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~i~ 683 (713)
.... +...+.+|+.|+++++ .+..+ +.+...+++|++|+++
T Consensus 284 vn~g-------~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 284 VNEG-------WLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhcc-------cccccchhhhhccchh-hhheeecchhhhcccceeEecc
Confidence 2111 1334555555555554 22222 2333445555555555
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=8.7e-16 Score=166.46 Aligned_cols=201 Identities=24% Similarity=0.257 Sum_probs=120.6
Q ss_pred CCcEEeccCccCccccchhhccCCccceeeccCcc----------------------cCCcccccCcCCCCCCcCCceec
Q 043964 485 NLEKLDISHCWYLKELPEGIGKLINMKHLLNERTD----------------------SLGRMPAGIARLTSLRTFDEFHV 542 (713)
Q Consensus 485 ~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~----------------------~l~~~p~~i~~l~~L~~L~~~~~ 542 (713)
+|++++++.+. +..+|+.++.+.+|+.|.+..|. .+..+|+..+.+++|++|++..+
T Consensus 242 nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNN-LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhh-hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 34444444444 45555555666666666555542 34455555566666666666554
Q ss_pred CCCCc------ccC--------CCCCCccCCcccc-CCCCCcEEEeccCCCCC-CCCCCCCCCCcceeeeccCccceEeC
Q 043964 543 SRGKA------VDG--------HKGCNNVFPNWMM-SLTNPRSLELILCENCN-QLPPLGILPSLEKVIITYMISVKRVG 606 (713)
Q Consensus 543 ~~~~e------i~~--------~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~L~~~~~l~~~~ 606 (713)
....- +.. ..+....+|..-. .++.|+.|.+.+|..-+ .+|.+-.+++|+.|+|++. .|..++
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fp 399 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFP 399 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCC
Confidence 43220 000 0011111221111 34556777777765433 4566777888888888763 244444
Q ss_pred ccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCC
Q 043964 607 NEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNC 686 (713)
Q Consensus 607 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C 686 (713)
.... ..++.|+.|.|++. +|+.++.... .+++|++|...++ .+..+| .+..++.|+.++++ |
T Consensus 400 as~~-----~kle~LeeL~LSGN-kL~~Lp~tva--------~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS--~ 461 (1081)
T KOG0618|consen 400 ASKL-----RKLEELEELNLSGN-KLTTLPDTVA--------NLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLS--C 461 (1081)
T ss_pred HHHH-----hchHHhHHHhcccc-hhhhhhHHHH--------hhhhhHHHhhcCC-ceeech-hhhhcCcceEEecc--c
Confidence 3322 36777888888873 5666664433 7888888888876 677888 57789999999997 8
Q ss_pred chhhHhhccCCCCcCcccC
Q 043964 687 GLLEECYRNRGGDWRKISR 705 (713)
Q Consensus 687 ~~l~~~~~~~~~~~~~i~~ 705 (713)
.+|.+....+..+|+..++
T Consensus 462 N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 462 NNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred chhhhhhhhhhCCCcccce
Confidence 9998887777777755444
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=6.8e-14 Score=157.71 Aligned_cols=240 Identities=20% Similarity=0.270 Sum_probs=152.6
Q ss_pred EEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCc
Q 043964 382 HLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIH 461 (713)
Q Consensus 382 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~ 461 (713)
.+.+.......+|..+. ++|+.|.+.+|.+. .++..++ .+|+.|++++|. +..+|..+. .+
T Consensus 182 ~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt------sLP~~l~---~nL~~L~Ls~N~------LtsLP~~l~--~~ 242 (754)
T PRK15370 182 ELRLKILGLTTIPACIP--EQITTLILDNNELK------SLPENLQ---GNIKTLYANSNQ------LTSIPATLP--DT 242 (754)
T ss_pred EEEeCCCCcCcCCcccc--cCCcEEEecCCCCC------cCChhhc---cCCCEEECCCCc------cccCChhhh--cc
Confidence 34444444444444332 46788888877642 2222222 478888888887 566776543 36
Q ss_pred CCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCcee
Q 043964 462 LKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFH 541 (713)
Q Consensus 462 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 541 (713)
|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. .+|++|++++| .+..+|..+. ++|+.|++..
T Consensus 243 L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 243 IQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred ccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcC
Confidence 8888888887 778887664 478888888776 777777554 47888888887 5556665443 4677777766
Q ss_pred cCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcc
Q 043964 542 VSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPK 620 (713)
Q Consensus 542 ~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~ 620 (713)
+.... +|..+ .++|+.|.+++| .+..+|. + .++|+.|+|+++. +..++.. ..++
T Consensus 314 N~Lt~-----------LP~~l--~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~--------lp~~ 368 (754)
T PRK15370 314 NSLTA-----------LPETL--PPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKNQ-ITVLPET--------LPPT 368 (754)
T ss_pred Ccccc-----------CCccc--cccceeccccCC-ccccCChhh--cCcccEEECCCCC-CCcCChh--------hcCC
Confidence 54332 45433 367888888887 3455664 3 3688888888753 3333221 2357
Q ss_pred cceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCC----CCCCccEEEEEcCC
Q 043964 621 LKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFH----QTTTLKELIIRSNC 686 (713)
Q Consensus 621 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~----~l~~L~~L~i~~~C 686 (713)
|+.|+++++ .+..++.. ..++|+.|++++| ++..+|..+. .++++..|++.+|.
T Consensus 369 L~~LdLs~N-~Lt~LP~~----------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPEN----------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCEEECCCC-cCCCCCHh----------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 888888875 35444322 2246888888887 6777776543 34778888888443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=1e-12 Score=147.37 Aligned_cols=236 Identities=19% Similarity=0.172 Sum_probs=152.0
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
+..++.|.+..+.+..+|. ..++|++|++.+|.+.. ++. ..++|+.|++++|. +..+|...
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts-------LP~---lp~sL~~L~Ls~N~------L~~Lp~lp 281 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-------LPV---LPPGLLELSIFSNP------LTHLPALP 281 (788)
T ss_pred hcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc-------ccC---cccccceeeccCCc------hhhhhhch
Confidence 4467777777777666543 24788888888876421 111 23577888888887 55555422
Q ss_pred hccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCc
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRT 536 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 536 (713)
.+|+.|++++|. +..+|.. +++|+.|++++|. +..+|... .+|+.|++++| .+..+|.. ..+|+.
T Consensus 282 ---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l---p~~Lq~ 346 (788)
T PRK15387 282 ---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNN-QLTSLPTL---PSGLQE 346 (788)
T ss_pred ---hhcCEEECcCCc-ccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccC-cccccccc---ccccce
Confidence 457778888887 7777752 4678888888876 67776533 35667777777 44556642 246777
Q ss_pred CCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCcccc
Q 043964 537 FDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIII 616 (713)
Q Consensus 537 L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 616 (713)
|++.++.... +|.. .++|+.|++++| .+..+|.+ .++|+.|+|+++. +..++.
T Consensus 347 LdLS~N~Ls~-----------LP~l---p~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~-Lt~LP~--------- 399 (788)
T PRK15387 347 LSVSDNQLAS-----------LPTL---PSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLPV--------- 399 (788)
T ss_pred EecCCCccCC-----------CCCC---Ccccceehhhcc-ccccCccc--ccccceEEecCCc-ccCCCC---------
Confidence 8777665432 4542 356777777776 44556653 3568888887642 222211
Q ss_pred cCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 617 AFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 617 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
.+++|+.|+++++. +..++. .+.+|+.|++++| .++.+|..+..+++|+.|+++ +++
T Consensus 400 l~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs-~N~ 456 (788)
T PRK15387 400 LPSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE-GNP 456 (788)
T ss_pred cccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC-cccccChHHhhccCCCeEECC-CCC
Confidence 24578888887753 443331 2346888888887 678888888888888888888 444
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=9.9e-15 Score=158.42 Aligned_cols=261 Identities=24% Similarity=0.354 Sum_probs=147.0
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCcc
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEP 479 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~ 479 (713)
.-+|++|++++|.. .. .+.-+..+.+|+.|+++.|. +..+|.+++++.+|+||.|.+|. +..+|.+
T Consensus 44 ~v~L~~l~lsnn~~------~~-fp~~it~l~~L~~ln~s~n~------i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~ 109 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQI------SS-FPIQITLLSHLRQLNLSRNY------IRSVPSSCSNMRNLQYLNLKNNR-LQSLPAS 109 (1081)
T ss_pred eeeeEEeecccccc------cc-CCchhhhHHHHhhcccchhh------HhhCchhhhhhhcchhheeccch-hhcCchh
Confidence 34466666666652 12 12224555666777776666 66666667777777777777666 6677777
Q ss_pred ccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccC-------------------CcccccCcCCCCCCcCCce
Q 043964 480 LCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSL-------------------GRMPAGIARLTSLRTFDEF 540 (713)
Q Consensus 480 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l-------------------~~~p~~i~~l~~L~~L~~~ 540 (713)
+..+++|+.||+++|. ....|.-+..++.+..+..++|..+ ..++..++.++. +|++.
T Consensus 110 ~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred HHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence 7777777777777766 5666666666655555555554211 112223333333 23332
Q ss_pred ecCCCC----------------------cccC--------C----------------------CCCCccCCccccCCCCC
Q 043964 541 HVSRGK----------------------AVDG--------H----------------------KGCNNVFPNWMMSLTNP 568 (713)
Q Consensus 541 ~~~~~~----------------------ei~~--------~----------------------~~~~~~~p~~~~~l~~L 568 (713)
.+.... ++.+ + .+....+|.|+..+.+|
T Consensus 187 ~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 187 YNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANL 266 (1081)
T ss_pred cchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccc
Confidence 222110 0111 0 01234578999999999
Q ss_pred cEEEeccCCC----------------------CCCCCC-CCCCCCcceeeeccCccceEeCccccCC-------------
Q 043964 569 RSLELILCEN----------------------CNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGI------------- 612 (713)
Q Consensus 569 ~~L~L~~~~~----------------------~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~------------- 612 (713)
+.|....|.. ++.+|+ ++.+.+|+.|+|.... +..++..+...
T Consensus 267 e~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 267 EALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred eEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhc
Confidence 9988877632 234455 5668888888887421 22222211100
Q ss_pred -------------------------------cccccCcccceeecccccccccccccccccccccccccccccccccccc
Q 043964 613 -------------------------------EIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSC 661 (713)
Q Consensus 613 -------------------------------~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 661 (713)
+...+|++|+.|+|++. .|..++... ...++.|++|.++++
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~-------~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASK-------LRKLEELEELNLSGN 417 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHH-------HhchHHhHHHhcccc
Confidence 01235666666666653 344443332 236677777777776
Q ss_pred ccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 662 PKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 662 ~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
+|+.+|..+..++.|++|...+||-
T Consensus 418 -kL~~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 418 -KLTTLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred -hhhhhhHHHHhhhhhHHHhhcCCce
Confidence 7777777777777777777765553
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-14 Score=127.06 Aligned_cols=151 Identities=25% Similarity=0.323 Sum_probs=129.8
Q ss_pred ccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccC
Q 043964 428 EKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKL 507 (713)
Q Consensus 428 ~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 507 (713)
-.+.++..|.|++|. +..+|+.|..|.+|+.|++++|. ++.+|.+|+.|+.|+.|++.-++ +..+|.+++.+
T Consensus 30 f~~s~ITrLtLSHNK------l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~ 101 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK------LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSF 101 (264)
T ss_pred cchhhhhhhhcccCc------eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCC
Confidence 356677888999999 78899999999999999999999 99999999999999999999887 88999999999
Q ss_pred CccceeeccCcc-cCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-C
Q 043964 508 INMKHLLNERTD-SLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-L 585 (713)
Q Consensus 508 ~~L~~L~l~~~~-~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l 585 (713)
+-|+.|++..|. .-..+|..+..|+.|+.|++..+.. ..+|..++.+++|+.|.+.+| .+-++|. +
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-----------e~lp~dvg~lt~lqil~lrdn-dll~lpkei 169 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-----------EILPPDVGKLTNLQILSLRDN-DLLSLPKEI 169 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-----------ccCChhhhhhcceeEEeeccC-chhhCcHHH
Confidence 999999998874 3356788888899999998877654 348999999999999999998 4456666 8
Q ss_pred CCCCCcceeeecc
Q 043964 586 GILPSLEKVIITY 598 (713)
Q Consensus 586 ~~l~~L~~L~L~~ 598 (713)
+.|..|+.|++.+
T Consensus 170 g~lt~lrelhiqg 182 (264)
T KOG0617|consen 170 GDLTRLRELHIQG 182 (264)
T ss_pred HHHHHHHHHhccc
Confidence 8899999999986
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=2.8e-12 Score=144.82 Aligned_cols=229 Identities=18% Similarity=0.261 Sum_probs=164.3
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
+..++.|.+.++.+..++..+. .+|++|.+.+|.+. .++.. + ..+|+.|+|++|. +..+|..+
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt------sLP~~-l--~~~L~~L~Ls~N~------L~~LP~~l 260 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT------SIPAT-L--PDTIQEMELSINR------ITELPERL 260 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc------cCChh-h--hccccEEECcCCc------cCcCChhH
Confidence 5678899999888887766543 68999999998643 22222 2 2479999999999 77888776
Q ss_pred hccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCc
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRT 536 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 536 (713)
. .+|++|++++|. +..+|..+. .+|++|++++|. +..+|..+. .+|++|++++| .+..+|..+. ++|+.
T Consensus 261 ~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~ 329 (754)
T PRK15370 261 P--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSN-SLTALPETLP--PGLKT 329 (754)
T ss_pred h--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCC-ccccCCcccc--cccee
Confidence 5 489999999998 889998775 589999999997 888887553 47999999998 5556776543 68999
Q ss_pred CCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCccc
Q 043964 537 FDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEII 615 (713)
Q Consensus 537 L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 615 (713)
|.+..+... .+|..+ .++|+.|+|++| .+..+|. + .++|+.|+|++|. +..++..
T Consensus 330 L~Ls~N~Lt-----------~LP~~l--~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~------- 385 (754)
T PRK15370 330 LEAGENALT-----------SLPASL--PPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNA-LTNLPEN------- 385 (754)
T ss_pred ccccCCccc-----------cCChhh--cCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCc-CCCCCHh-------
Confidence 988876543 266655 378999999998 4556665 3 3689999999864 4443322
Q ss_pred ccCcccceeecccccccccccccccccccccccccccccccccccccc
Q 043964 616 IAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPK 663 (713)
Q Consensus 616 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 663 (713)
-.++|+.|+++++ ++..++.... .....+|++..|.+.+++.
T Consensus 386 -l~~sL~~LdLs~N-~L~~LP~sl~----~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 386 -LPAALQIMQASRN-NLVRLPESLP----HFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -HHHHHHHHhhccC-CcccCchhHH----HHhhcCCCccEEEeeCCCc
Confidence 1246888888874 4544433211 1122457788888887753
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=8.4e-13 Score=151.29 Aligned_cols=132 Identities=29% Similarity=0.363 Sum_probs=104.3
Q ss_pred CCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC-cchhccCcCCccccCCcccccccC
Q 043964 399 RVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-RNIEKLIHLKYLNLSCLTSIRKLP 477 (713)
Q Consensus 399 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp 477 (713)
+....|...+.++.. ..+ .. -..++.|+.|-+.++.. .+..++ ..+..+++|++|||++|..+..||
T Consensus 521 ~~~~~rr~s~~~~~~------~~~-~~-~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKI------EHI-AG-SSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccch------hhc-cC-CCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 345677777776642 111 11 13455799998888751 033444 347889999999999998899999
Q ss_pred ccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecC
Q 043964 478 EPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVS 543 (713)
Q Consensus 478 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 543 (713)
++|++|-+||+|+++++. +..+|.++++|++|.+|++..+..+..+|..+..|++|++|.++...
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999999999998 99999999999999999999998777777666779999999987754
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.21 E-value=4.4e-11 Score=134.37 Aligned_cols=222 Identities=18% Similarity=0.111 Sum_probs=157.1
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
+++++.|.+.++.+..+|. ..++|+.|.+++|.+ .. ++. ....|+.|++++|. +..+|..
T Consensus 241 p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L------~~-Lp~---lp~~L~~L~Ls~N~------Lt~LP~~- 300 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL------TH-LPA---LPSGLCKLWIFGNQ------LTSLPVL- 300 (788)
T ss_pred CCCCcEEEecCCccCcccC---cccccceeeccCCch------hh-hhh---chhhcCEEECcCCc------ccccccc-
Confidence 6788999999988776553 246899999998863 22 222 23578899999999 6677753
Q ss_pred hccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCc
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRT 536 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 536 (713)
+++|++|+|++|. +..+|... .+|+.|++++|. +..+|.. ..+|++|++++| .+..+|... .+|+.
T Consensus 301 --p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~lp---~~L~~ 366 (788)
T PRK15387 301 --PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDN-QLASLPTLP---SELYK 366 (788)
T ss_pred --ccccceeECCCCc-cccCCCCc---ccccccccccCc-ccccccc---ccccceEecCCC-ccCCCCCCC---cccce
Confidence 4689999999998 88888633 467889999987 7888852 257999999998 566777643 46667
Q ss_pred CCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCcccc
Q 043964 537 FDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIII 616 (713)
Q Consensus 537 L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 616 (713)
|++..+... .+|.. .++|+.|+|++| .+..+|.+ .++|+.|+++++. +..++.
T Consensus 367 L~Ls~N~L~-----------~LP~l---~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~--------- 419 (788)
T PRK15387 367 LWAYNNRLT-----------SLPAL---PSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM--------- 419 (788)
T ss_pred ehhhccccc-----------cCccc---ccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------
Confidence 777665433 25543 357999999988 45567754 3689999998753 333321
Q ss_pred cCcccceeeccccccccccccccccccccccccccccccccccccccCCCCC
Q 043964 617 AFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALP 668 (713)
Q Consensus 617 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp 668 (713)
.+.+|+.|+++++ .+..++.. ...+++|+.|++++|+.-...|
T Consensus 420 l~~~L~~L~Ls~N-qLt~LP~s--------l~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 420 LPSGLLSLSVYRN-QLTRLPES--------LIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred chhhhhhhhhccC-cccccChH--------HhhccCCCeEECCCCCCCchHH
Confidence 2357888888764 45555443 3378999999999986543333
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.04 E-value=8.4e-12 Score=130.42 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=49.9
Q ss_pred CCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCccc-chhhcccCcchhccCcCCccccCCcccccccC
Q 043964 399 RVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISR-WYFILEIPRNIEKLIHLKYLNLSCLTSIRKLP 477 (713)
Q Consensus 399 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~-~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp 477 (713)
.+.+|+.|.+.++.+.... ...+...+...+.|+.|+++++...+ ......++..+..+.+|++|++++|......+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~--~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEA--AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCCCcHHH--HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3444555555555432111 11123334445555566655554321 00112233344445555555555555222233
Q ss_pred ccccCCCC---CcEEeccCccCcc-----ccchhhccC-CccceeeccCc
Q 043964 478 EPLCELYN---LEKLDISHCWYLK-----ELPEGIGKL-INMKHLLNERT 518 (713)
Q Consensus 478 ~~i~~L~~---L~~L~l~~~~~l~-----~lp~~i~~L-~~L~~L~l~~~ 518 (713)
..+..+.+ |+.|++++|. +. .++..+..+ ++|+.|++++|
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 33333333 5555555554 22 122233344 55555555555
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.03 E-value=3.3e-11 Score=119.45 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=92.7
Q ss_pred ceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-CcchhccCcCCccccCCcccccccCc-c
Q 043964 402 RMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLKYLNLSCLTSIRKLPE-P 479 (713)
Q Consensus 402 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp~-~ 479 (713)
....+.+..|. +..+++..|+.+++||.|||++|. +..+ |..+..|..|-.|-+-++..|+.+|+ .
T Consensus 68 ~tveirLdqN~------I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQNQ------ISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cceEEEeccCC------cccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 44556666665 345577778888888888888888 5554 67788888777776666333888884 5
Q ss_pred ccCCCCCcEEeccCccCccccc-hhhccCCccceeeccCcccCCcccc-cCcCCCCCCcCCceecC
Q 043964 480 LCELYNLEKLDISHCWYLKELP-EGIGKLINMKHLLNERTDSLGRMPA-GIARLTSLRTFDEFHVS 543 (713)
Q Consensus 480 i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~ 543 (713)
+++|..||.|.+.-|+ +..++ ..+..|++|..|.+.++ ....++. .+..+.+++++++..+.
T Consensus 136 F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 7888888888888877 55444 44788888888888887 5555665 57778888888876655
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.97 E-value=6.4e-11 Score=123.74 Aligned_cols=249 Identities=18% Similarity=0.133 Sum_probs=127.6
Q ss_pred HHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccccc-------ccCccccCCCCCcEEeccCccCc
Q 043964 425 ELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIR-------KLPEPLCELYNLEKLDISHCWYL 497 (713)
Q Consensus 425 ~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~-------~lp~~i~~L~~L~~L~l~~~~~l 497 (713)
..+..+..|++|+++++.++. .....++..+...+.|++|+++++. +. .++..+..+++|+.|++++|...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~-~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGE-EAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHhhccEEeecCCCCcH-HHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 345566667777777777422 0123345556666667777777665 33 23344566777777777777633
Q ss_pred cccchhhccCCc---cceeeccCcccCC----cccccCcCC-CCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCc
Q 043964 498 KELPEGIGKLIN---MKHLLNERTDSLG----RMPAGIARL-TSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPR 569 (713)
Q Consensus 498 ~~lp~~i~~L~~---L~~L~l~~~~~l~----~~p~~i~~l-~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~ 569 (713)
...+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++..+..... ....++..+..+++|+
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------~~~~~~~~~~~~~~L~ 168 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA------SCEALAKALRANRDLK 168 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch------HHHHHHHHHHhCCCcC
Confidence 344444544444 7777777774321 122334455 6777777766654310 0011333444566777
Q ss_pred EEEeccCCCCC----CCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccccccc
Q 043964 570 SLELILCENCN----QLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGN 644 (713)
Q Consensus 570 ~L~L~~~~~~~----~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 644 (713)
.|++++|.... .++. +..+++|+.|++++|. +...+..... .....+++|+.|+++++. +..+..... ..
T Consensus 169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~-~~~~~~~~L~~L~ls~n~-l~~~~~~~l--~~ 243 (319)
T cd00116 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA-ETLASLKSLEVLNLGDNN-LTDAGAAAL--AS 243 (319)
T ss_pred EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH-HHhcccCCCCEEecCCCc-CchHHHHHH--HH
Confidence 77777764321 1111 3445677777777653 2111100000 012246677777777653 332111100 00
Q ss_pred cccccccccccccccccccC----CCCCCCCCCCCCccEEEEEcCCc
Q 043964 645 AFINIMPRLSSLTIDSCPKL----KALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 645 ~~~~~~p~L~~L~l~~c~~L----~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
......+.|++|++.+|... ..++..+..+++|+.++++ ++.
T Consensus 244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~-~N~ 289 (319)
T cd00116 244 ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR-GNK 289 (319)
T ss_pred HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC-CCC
Confidence 00002367788888777321 1222334445778888887 443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=1.5e-10 Score=120.03 Aligned_cols=186 Identities=22% Similarity=0.277 Sum_probs=127.7
Q ss_pred EEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCC
Q 043964 384 MLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLK 463 (713)
Q Consensus 384 sl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr 463 (713)
.++.+.+..++..+..+..|.++.+..|.+ .. .+.....+..|.+|||+.|+ +..+|..++.|+ |+
T Consensus 81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~------r~-ip~~i~~L~~lt~l~ls~Nq------lS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 81 DLSRNRFSELPEEACAFVSLESLILYHNCI------RT-IPEAICNLEALTFLDLSSNQ------LSHLPDGLCDLP-LK 146 (722)
T ss_pred hccccccccCchHHHHHHHHHHHHHHhccc------ee-cchhhhhhhHHHHhhhccch------hhcCChhhhcCc-ce
Confidence 344444555566666677777777776652 22 23335677777788888777 667777777766 77
Q ss_pred ccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecC
Q 043964 464 YLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVS 543 (713)
Q Consensus 464 ~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 543 (713)
.|-+++|+ ++.+|..|+-+..|..||.+.|. +..+|..++.|.+|+.|.+..| .+..+|..+..|+ |..|+++.+.
T Consensus 147 vli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn-~l~~lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred eEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCCc-eeeeecccCc
Confidence 78888777 78888888877788888888776 7778887888888888887777 5566777666444 6677766654
Q ss_pred CCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC----CCCCCCcceeeeccC
Q 043964 544 RGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP----LGILPSLEKVIITYM 599 (713)
Q Consensus 544 ~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~----l~~l~~L~~L~L~~~ 599 (713)
. ..+|-.+..+++|+.|.|.+|. +.+-|. -|...-.++|+..-|
T Consensus 223 i-----------s~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 I-----------SYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred e-----------eecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 3 3478888888888888888774 333332 345555677777665
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=1.2e-10 Score=120.67 Aligned_cols=132 Identities=22% Similarity=0.336 Sum_probs=69.6
Q ss_pred CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccc
Q 043964 394 PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSI 473 (713)
Q Consensus 394 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i 473 (713)
+..+.++..|..|+++.|.++. .+.. +. .--|++|-+++|+ +..+|+.|+.+.+|..|+.+.|. +
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~------lp~~-lC-~lpLkvli~sNNk------l~~lp~~ig~~~tl~~ld~s~ne-i 178 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSH------LPDG-LC-DLPLKVLIVSNNK------LTSLPEEIGLLPTLAHLDVSKNE-I 178 (722)
T ss_pred chhhhhhhHHHHhhhccchhhc------CChh-hh-cCcceeEEEecCc------cccCCcccccchhHHHhhhhhhh-h
Confidence 4455555555555555554211 1111 11 1235555555555 55555555555556666666555 5
Q ss_pred cccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecC
Q 043964 474 RKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVS 543 (713)
Q Consensus 474 ~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 543 (713)
..+|..++.|..|+.|.++.|+ +..+|..+..| .|..|+++.| ++..+|-.|.+|+.||+|.+.++.
T Consensus 179 ~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 179 QSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCC
Confidence 5555556666666666655555 55555555533 3555555544 455555555566666665555443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=2.5e-09 Score=98.61 Aligned_cols=82 Identities=32% Similarity=0.404 Sum_probs=27.3
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCcchh-ccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhh-
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPRNIE-KLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGI- 504 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~-~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i- 504 (713)
+.+...+|.|+|+++. +..+ +.++ .+.+|+.|+|++|. ++.++ .+..|++|++|++++|. +..++..+
T Consensus 15 ~~n~~~~~~L~L~~n~------I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ------ISTI-ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLD 84 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHH
T ss_pred cccccccccccccccc------cccc-cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCC-CCccccchH
Confidence 3455567888888888 4444 3455 47788889999888 88887 47788899999998887 77776655
Q ss_pred ccCCccceeeccCc
Q 043964 505 GKLINMKHLLNERT 518 (713)
Q Consensus 505 ~~L~~L~~L~l~~~ 518 (713)
..+++|++|++++|
T Consensus 85 ~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 85 KNLPNLQELYLSNN 98 (175)
T ss_dssp HH-TT--EEE-TTS
T ss_pred HhCCcCCEEECcCC
Confidence 36888999988887
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=4e-10 Score=112.87 Aligned_cols=304 Identities=18% Similarity=0.178 Sum_probs=184.3
Q ss_pred ceEEEEEEecCCC---CCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc
Q 043964 379 KVCHLMLIIGEGA---SFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN 455 (713)
Q Consensus 379 ~~r~lsl~~~~~~---~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 455 (713)
..+.+|+.+.... .+......++++..|.+.++. .+......++-..++.|+.|+|..|..-... .+-.-
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~---~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCSSITDV---SLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccchhHHH---HHHHH
Confidence 3445555544221 223344578888888888875 3334445555678999999999996631111 11123
Q ss_pred hhccCcCCccccCCcccccc--cCccccCCCCCcEEeccCccCccc--cchhhccCCccceeeccCcccCCccc--ccCc
Q 043964 456 IEKLIHLKYLNLSCLTSIRK--LPEPLCELYNLEKLDISHCWYLKE--LPEGIGKLINMKHLLNERTDSLGRMP--AGIA 529 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~ 529 (713)
...+++|.||++++|.-|.. +-.-.....+|+.+.++||..++. +-..-....-+..+++..|..+.... ..-.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 44578899999999985554 222234556677887788763321 11111223335556666774443321 1112
Q ss_pred CCCCCCcCCceecCCCCcccCCCCCCccCCcc--ccCCCCCcEEEeccCCCCCCC--CCC-CCCCCcceeeeccCccceE
Q 043964 530 RLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNW--MMSLTNPRSLELILCENCNQL--PPL-GILPSLEKVIITYMISVKR 604 (713)
Q Consensus 530 ~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~--~~~l~~L~~L~L~~~~~~~~l--~~l-~~l~~L~~L~L~~~~~l~~ 604 (713)
.+..||.|....+.... ..+.| .....+|+.|.++.|..+.+. ..+ .+.+.|+.|++.+|.....
T Consensus 292 ~c~~lq~l~~s~~t~~~----------d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDIT----------DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred hhhHhhhhcccCCCCCc----------hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 46678888877765431 11212 236789999999999865543 223 4678999999988754322
Q ss_pred eCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCC-CCCCCCCCCCccEEEEE
Q 043964 605 VGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKA-LPDHFHQTTTLKELIIR 683 (713)
Q Consensus 605 ~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~-lp~~l~~l~~L~~L~i~ 683 (713)
.++... ...+|.|+.|.++.|...++...... ......+..|+.|.+.+||.+.. .-..+..+++|+.+++.
T Consensus 362 --~tL~sl--s~~C~~lr~lslshce~itD~gi~~l---~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 362 --GTLASL--SRNCPRLRVLSLSHCELITDEGIRHL---SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred --hhHhhh--ccCCchhccCChhhhhhhhhhhhhhh---hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 122222 23789999999998876654411100 00123677899999999998773 22345678999999999
Q ss_pred cCCchhhHhhccCCCCcCcccCcCccccC
Q 043964 684 SNCGLLEECYRNRGGDWRKISRIPNLEIR 712 (713)
Q Consensus 684 ~~C~~l~~~~~~~~~~~~~i~~i~~~~~~ 712 (713)
+|......-.. +...|+|+++++
T Consensus 435 -~~q~vtk~~i~-----~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 435 -DCQDVTKEAIS-----RFATHLPNIKVH 457 (483)
T ss_pred -chhhhhhhhhH-----HHHhhCccceeh
Confidence 99887543222 356888888765
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=2.5e-09 Score=106.29 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=106.2
Q ss_pred eecCCcccccccccCCCceEEEEEEecCCCCCC-ccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCC
Q 043964 362 MEINGSKEHNAINSLDKKVCHLMLIIGEGASFP-VSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGK 440 (713)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~ 440 (713)
++..+..-...+...|.....+.+..+.+..+| .+|..+++||.|++++|. +..+-+..|.+++.|-.|-+-+
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhhc
Confidence 333333333344556888888999999888765 578899999999999997 3445567788888877766655
Q ss_pred -CCcccchhhcccCc-chhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccch-hhccCCccceeecc
Q 043964 441 -WSISRWYFILEIPR-NIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPE-GIGKLINMKHLLNE 516 (713)
Q Consensus 441 -~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~ 516 (713)
|+ +..+|. .++.|..|+-|.+.-|. +..++ ..+..|++|..|.+..|. +..++. .+..+..++++++.
T Consensus 125 ~Nk------I~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 125 NNK------ITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred CCc------hhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhh
Confidence 67 778875 57788888888888777 66555 457778888888888876 777776 57777788877776
Q ss_pred Ccc
Q 043964 517 RTD 519 (713)
Q Consensus 517 ~~~ 519 (713)
.+.
T Consensus 197 ~np 199 (498)
T KOG4237|consen 197 QNP 199 (498)
T ss_pred cCc
Confidence 553
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1.9e-08 Score=108.27 Aligned_cols=158 Identities=28% Similarity=0.362 Sum_probs=73.6
Q ss_pred CceeEEEeCCCCcccchhhcccCcchhccC-cCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCc
Q 043964 431 TSLRVLNIGKWSISRWYFILEIPRNIEKLI-HLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLIN 509 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~-~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 509 (713)
..+..|++.++. +..+|+.+..+. +|++|+++++. +..+|..++.+++|+.|++++|+ +.++|...+.+++
T Consensus 116 ~~l~~L~l~~n~------i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~ 187 (394)
T COG4886 116 TNLTSLDLDNNN------ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSN 187 (394)
T ss_pred cceeEEecCCcc------cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhh
Confidence 445555555555 444444444442 55555555555 55554445555555555555554 4555554445555
Q ss_pred cceeeccCcccCCcccccCcCCCCCCcCCceecCCCCc---ccC---------CCCCCccCCccccCCCCCcEEEeccCC
Q 043964 510 MKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKA---VDG---------HKGCNNVFPNWMMSLTNPRSLELILCE 577 (713)
Q Consensus 510 L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~e---i~~---------~~~~~~~~p~~~~~l~~L~~L~L~~~~ 577 (713)
|+.|+++++ .+..+|..++.+..|++|.+..+..... +.. ..+....+|..+..+++|+.|++++|
T Consensus 188 L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n- 265 (394)
T COG4886 188 LNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN- 265 (394)
T ss_pred hhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-
Confidence 555555554 3444444444444455554444321110 000 00001112445555555666665555
Q ss_pred CCCCCCCCCCCCCcceeeecc
Q 043964 578 NCNQLPPLGILPSLEKVIITY 598 (713)
Q Consensus 578 ~~~~l~~l~~l~~L~~L~L~~ 598 (713)
.+..++.++.+.+|+.|++++
T Consensus 266 ~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 266 QISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred cccccccccccCccCEEeccC
Confidence 334444455555566665554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=2.3e-09 Score=102.57 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=72.6
Q ss_pred CCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCcc
Q 043964 482 ELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNW 561 (713)
Q Consensus 482 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~ 561 (713)
..+.|.+|||++|. +..+-.++.-+++++.|+++.|... .+ ..+..|.+|+.|+++++.... +-.|
T Consensus 282 TWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-----------~~Gw 347 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-----------CVGW 347 (490)
T ss_pred hHhhhhhccccccc-hhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHh-----------hhhh
Confidence 35678888888876 7777777777888888888887432 22 236677777778777654322 4556
Q ss_pred ccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeecc
Q 043964 562 MMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITY 598 (713)
Q Consensus 562 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 598 (713)
-..+-|++.|.|++| .++++..+++|-+|.+|++++
T Consensus 348 h~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred HhhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccc
Confidence 667888888888887 566777777788888888775
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.2e-08 Score=102.98 Aligned_cols=87 Identities=21% Similarity=0.269 Sum_probs=43.0
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCcc--ccCCCCCcEEeccCccCccc--cch
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEP--LCELYNLEKLDISHCWYLKE--LPE 502 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~--i~~L~~L~~L~l~~~~~l~~--lp~ 502 (713)
...|+++|.|||+.|-+..|. .+-.-+..|++|+.|+|+.|. +...-++ ...+.+|.+|.|++|. +.. +-.
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~---~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~ 216 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWF---PVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQW 216 (505)
T ss_pred hhhCCcceeecchhhhHHhHH---HHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCC-CCHHHHHH
Confidence 445566666666665543322 222334556666666666655 3222111 2245566666666665 321 111
Q ss_pred hhccCCccceeeccCc
Q 043964 503 GIGKLINMKHLLNERT 518 (713)
Q Consensus 503 ~i~~L~~L~~L~l~~~ 518 (713)
.....++|..|++..|
T Consensus 217 ~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEAN 232 (505)
T ss_pred HHHhCCcHHHhhhhcc
Confidence 2233456666666655
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.2e-08 Score=102.95 Aligned_cols=202 Identities=18% Similarity=0.111 Sum_probs=136.9
Q ss_pred CCceEEEEEEecCCCCCC--ccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc
Q 043964 377 DKKVCHLMLIIGEGASFP--VSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR 454 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 454 (713)
.+++|.+++.+...+..+ .....|+++|.|++++|-+.. -.....+...+++|+.|+|+.|.+.... .. .
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n----w~~v~~i~eqLp~Le~LNls~Nrl~~~~--~s--~ 191 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN----WFPVLKIAEQLPSLENLNLSSNRLSNFI--SS--N 191 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh----HHHHHHHHHhcccchhcccccccccCCc--cc--c
Confidence 556777777776655423 256679999999999985321 1224456789999999999999853200 00 1
Q ss_pred chhccCcCCccccCCccccc--ccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCccc--ccCcC
Q 043964 455 NIEKLIHLKYLNLSCLTSIR--KLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMP--AGIAR 530 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~ 530 (713)
.-..+.+|+.|.|+.|. +. .+-...-.+++|+.|+|.+|..+..--..-..++.|+.|+|++|. +...+ ..++.
T Consensus 192 ~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~ 269 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGT 269 (505)
T ss_pred chhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-cccccccccccc
Confidence 12357899999999998 44 233334567899999999985333222334557789999999994 44455 45788
Q ss_pred CCCCCcCCceecCCCCcccCCCCCCccCCcc-----ccCCCCCcEEEeccCCC--CCCCCCCCCCCCcceeeec
Q 043964 531 LTSLRTFDEFHVSRGKAVDGHKGCNNVFPNW-----MMSLTNPRSLELILCEN--CNQLPPLGILPSLEKVIIT 597 (713)
Q Consensus 531 l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~-----~~~l~~L~~L~L~~~~~--~~~l~~l~~l~~L~~L~L~ 597 (713)
++.|..|++..++..+ -..|+. ...+++|++|.+..|+- +..+..+..+++|+.|.+.
T Consensus 270 l~~L~~Lnls~tgi~s---------i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIAS---------IAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccchhhhhccccCcch---------hcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 9999999988776542 123333 23688999999999854 4455556667788877654
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=4.2e-08 Score=105.69 Aligned_cols=193 Identities=20% Similarity=0.226 Sum_probs=135.8
Q ss_pred eEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCC-CCcEEeccCccCccccchhhccCCccce
Q 043964 434 RVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELY-NLEKLDISHCWYLKELPEGIGKLINMKH 512 (713)
Q Consensus 434 r~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~-~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 512 (713)
..|++..+. +...+..+..+..+..|++.++. +.++|..++.+. +|+.|+++++. +..+|..++.+++|+.
T Consensus 96 ~~l~~~~~~------~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~ 167 (394)
T COG4886 96 PSLDLNLNR------LRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKN 167 (394)
T ss_pred ceeeccccc------cccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccc
Confidence 356777766 43445566777889999999999 999999888885 99999999998 8999888999999999
Q ss_pred eeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcc
Q 043964 513 LLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLE 592 (713)
Q Consensus 513 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 592 (713)
|++++| .+..+|...+.+++|+.|++..+.... +|..+..+.+|..|.++++.....+..+..+.++.
T Consensus 168 L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~-----------l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~ 235 (394)
T COG4886 168 LDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISD-----------LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS 235 (394)
T ss_pred cccCCc-hhhhhhhhhhhhhhhhheeccCCcccc-----------CchhhhhhhhhhhhhhcCCcceecchhhhhccccc
Confidence 999999 667788877789999999998876543 56655556668888888775445555566677777
Q ss_pred eeeeccCccceEeCccccCCcccccCcccceeecccccccccccccccccccccccccccccccccccccc
Q 043964 593 KVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPK 663 (713)
Q Consensus 593 ~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 663 (713)
.|.+.+.... .+ .......++|++|.+++. .+..+.. . ..+.+|+.|++++...
T Consensus 236 ~l~l~~n~~~-~~------~~~~~~l~~l~~L~~s~n-~i~~i~~-~--------~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 236 GLELSNNKLE-DL------PESIGNLSNLETLDLSNN-QISSISS-L--------GSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccCCceee-ec------cchhccccccceeccccc-ccccccc-c--------cccCccCEEeccCccc
Confidence 7665442211 11 011224566777777653 2333332 1 2556677777766533
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=2.9e-08 Score=91.61 Aligned_cols=131 Identities=26% Similarity=0.331 Sum_probs=53.0
Q ss_pred cCCCceeEEEecCCcCCCcchhhhHHHHHHc-cCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccccccc
Q 043964 398 CRVKRMRSLFIGGNMLDNSSLNGKMLKELFE-KLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKL 476 (713)
Q Consensus 398 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~l 476 (713)
.++.++|.|.+.++.+. . ... +. .+.+|++|+|++|. +..++ .+..|++|+.|++++|. ++.+
T Consensus 16 ~n~~~~~~L~L~~n~I~------~-Ie~-L~~~l~~L~~L~Ls~N~------I~~l~-~l~~L~~L~~L~L~~N~-I~~i 79 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS------T-IEN-LGATLDKLEVLDLSNNQ------ITKLE-GLPGLPRLKTLDLSNNR-ISSI 79 (175)
T ss_dssp ---------------------------S---TT-TT--EEE-TTS--------S--T-T----TT--EEE--SS----S-
T ss_pred ccccccccccccccccc------c-ccc-hhhhhcCCCEEECCCCC------Ccccc-CccChhhhhhcccCCCC-CCcc
Confidence 44567888999888632 1 222 33 57889999999999 66654 57778999999999999 8888
Q ss_pred Cccc-cCCCCCcEEeccCccCccccch--hhccCCccceeeccCcccCCc---ccccCcCCCCCCcCCceecCCC
Q 043964 477 PEPL-CELYNLEKLDISHCWYLKELPE--GIGKLINMKHLLNERTDSLGR---MPAGIARLTSLRTFDEFHVSRG 545 (713)
Q Consensus 477 p~~i-~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~---~p~~i~~l~~L~~L~~~~~~~~ 545 (713)
+..+ ..+++|++|++++|+ +..+-. .+..+++|++|++.+|+.... -...+..+++|+.|+...+...
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred ccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 7655 368999999999987 655432 367788999999999864322 1134677888888887666543
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=7.8e-09 Score=99.07 Aligned_cols=129 Identities=18% Similarity=0.160 Sum_probs=97.0
Q ss_pred hhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCC
Q 043964 456 IEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLR 535 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~ 535 (713)
+.....|..|||++|. |+.+.+++.-++.++.|+++.|. +..+.. +..|++|++|++++| .+..+-..-.+|.|.+
T Consensus 280 ~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 3445678899999988 89898888888999999999987 665544 888899999999988 4455544445677888
Q ss_pred cCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCC--CCCCCCCCCCCCCcceeeeccCc
Q 043964 536 TFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCE--NCNQLPPLGILPSLEKVIITYMI 600 (713)
Q Consensus 536 ~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~--~~~~l~~l~~l~~L~~L~L~~~~ 600 (713)
+|.+..+... -.+.+..+-+|..|++++|. .++....+|+||.|+.|.|.+.+
T Consensus 356 tL~La~N~iE------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 356 TLKLAQNKIE------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeehhhhhHh------------hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 8888776543 12344567788899999884 34455668999999999888654
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=4.8e-07 Score=102.24 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=71.3
Q ss_pred CCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCcee
Q 043964 462 LKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFH 541 (713)
Q Consensus 462 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 541 (713)
++.|+|+++.....+|..+++|++|+.|+|++|.....+|..++.+++|+.|++++|.....+|..+++|++|+.|++..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56666776663346666677777777777777764446666677777777777777755556676677777777777666
Q ss_pred cCCCCcccCCCCCCccCCccccC-CCCCcEEEeccCCCCCCCC
Q 043964 542 VSRGKAVDGHKGCNNVFPNWMMS-LTNPRSLELILCENCNQLP 583 (713)
Q Consensus 542 ~~~~~ei~~~~~~~~~~p~~~~~-l~~L~~L~L~~~~~~~~l~ 583 (713)
+... ..+|..+.. +.++..+.+.+|..+...|
T Consensus 500 N~l~----------g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLS----------GRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred Cccc----------ccCChHHhhccccCceEEecCCccccCCC
Confidence 5432 235655543 3456677777775544344
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.3e-07 Score=90.81 Aligned_cols=104 Identities=27% Similarity=0.363 Sum_probs=70.3
Q ss_pred EEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccc---ccccCcccc
Q 043964 405 SLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTS---IRKLPEPLC 481 (713)
Q Consensus 405 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~---i~~lp~~i~ 481 (713)
-|.+.++.++.. +. ...+-..++.++.|||.+|.+++|.- +-.-+.+|++|++|+|++|.. |..+| .
T Consensus 49 llvln~~~id~~---gd-~~~~~~~~~~v~elDL~~N~iSdWse---I~~ile~lP~l~~LNls~N~L~s~I~~lp---~ 118 (418)
T KOG2982|consen 49 LLVLNGSIIDNE---GD-VMLFGSSVTDVKELDLTGNLISDWSE---IGAILEQLPALTTLNLSCNSLSSDIKSLP---L 118 (418)
T ss_pred hheecCCCCCcc---hh-HHHHHHHhhhhhhhhcccchhccHHH---HHHHHhcCccceEeeccCCcCCCccccCc---c
Confidence 444555543332 22 23334678899999999999887443 334467899999999999872 33344 3
Q ss_pred CCCCCcEEeccCccCc-cccchhhccCCccceeeccCc
Q 043964 482 ELYNLEKLDISHCWYL-KELPEGIGKLINMKHLLNERT 518 (713)
Q Consensus 482 ~L~~L~~L~l~~~~~l-~~lp~~i~~L~~L~~L~l~~~ 518 (713)
.+.+|++|-|.|+..- ......+..+++++.|+++.|
T Consensus 119 p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 5679999999988721 334455677788888888776
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.5e-08 Score=95.76 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=42.9
Q ss_pred ceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccch--hhccCCc
Q 043964 432 SLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPE--GIGKLIN 509 (713)
Q Consensus 432 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~ 509 (713)
.|++|||+...++ ...+..-+..+.+|+.|+|.++..-..+-..|.+-.+|+.|+++.|..+.+..- -+.+++.
T Consensus 186 Rlq~lDLS~s~it----~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVIT----VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhhee----HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 3555555555422 122223344455555555555553333444555666666666666655443221 2455666
Q ss_pred cceeeccCcc
Q 043964 510 MKHLLNERTD 519 (713)
Q Consensus 510 L~~L~l~~~~ 519 (713)
|..|+++.|.
T Consensus 262 L~~LNlsWc~ 271 (419)
T KOG2120|consen 262 LDELNLSWCF 271 (419)
T ss_pred HhhcCchHhh
Confidence 6666666663
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=1.8e-06 Score=97.60 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=41.5
Q ss_pred CcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCC
Q 043964 486 LEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSL 565 (713)
Q Consensus 486 L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l 565 (713)
++.|+|+++.....+|..+++|++|+.|+|++|.....+|..++.+++|+.|++..+... ..+|..+..+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls----------g~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN----------GSIPESLGQL 489 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC----------CCCchHHhcC
Confidence 444455554433344445555555555555555433444444555555555554444322 1244444455
Q ss_pred CCCcEEEeccCCCCCCCCC
Q 043964 566 TNPRSLELILCENCNQLPP 584 (713)
Q Consensus 566 ~~L~~L~L~~~~~~~~l~~ 584 (713)
++|+.|+|++|.....+|.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred CCCCEEECcCCcccccCCh
Confidence 5555555555443333443
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.21 E-value=7.1e-08 Score=97.03 Aligned_cols=265 Identities=14% Similarity=0.117 Sum_probs=162.6
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccC--c
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLP--E 478 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp--~ 478 (713)
..|+.|.+.|+.- .-...+..+...++++..|++.+|.... -..+-.--..+.+|++|+|..|..++... .
T Consensus 138 g~lk~LSlrG~r~----v~~sslrt~~~~CpnIehL~l~gc~~iT---d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRA----VGDSSLRTFASNCPNIEHLALYGCKKIT---DSSLLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred ccccccccccccc----CCcchhhHHhhhCCchhhhhhhcceecc---HHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 4678888888742 1122245556789999999998887321 11112223457789999999987666532 2
Q ss_pred cccCCCCCcEEeccCccCccc--cchhhccCCccceeeccCcccCCc--ccccCcCCCCCCcCCceecCCCCcccCCCCC
Q 043964 479 PLCELYNLEKLDISHCWYLKE--LPEGIGKLINMKHLLNERTDSLGR--MPAGIARLTSLRTFDEFHVSRGKAVDGHKGC 554 (713)
Q Consensus 479 ~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~ 554 (713)
-....++|.+|++++|..+.. +..-.....+|+.+.+.+|..+.. +-..-+...-+-.+++..+....
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-------- 282 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-------- 282 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc--------
Confidence 234578899999999876544 212234555677776777743211 00001122223333333332111
Q ss_pred CccCCccc--cCCCCCcEEEeccCCCCCCCCC---CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccc
Q 043964 555 NNVFPNWM--MSLTNPRSLELILCENCNQLPP---LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWM 629 (713)
Q Consensus 555 ~~~~p~~~--~~l~~L~~L~L~~~~~~~~l~~---l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~ 629 (713)
..--|. ..+..|+.|..++|....+.+. -.+.++|+.|.+..|..+...+-...+ ...+.|+.|.+..|
T Consensus 283 --D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 283 --DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEEC 356 (483)
T ss_pred --chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhccccc
Confidence 001121 1478899999999977665443 346799999999999876554433333 26788999998877
Q ss_pred ccccccccccccccccccccccccccccccccccCCCC-----CCCCCCCCCccEEEEEcCCchhhHhh
Q 043964 630 LELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKAL-----PDHFHQTTTLKELIIRSNCGLLEECY 693 (713)
Q Consensus 630 ~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l-----p~~l~~l~~L~~L~i~~~C~~l~~~~ 693 (713)
.....-.... ....+|.|+.|.++.|...+.. ..+-..+..|..+++. |||.+.+..
T Consensus 357 ~~~~d~tL~s------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~-n~p~i~d~~ 418 (483)
T KOG4341|consen 357 GLITDGTLAS------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD-NCPLITDAT 418 (483)
T ss_pred ceehhhhHhh------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec-CCCCchHHH
Confidence 5443322111 1347899999999999776643 3333456789999999 999987754
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=2e-06 Score=64.93 Aligned_cols=56 Identities=30% Similarity=0.464 Sum_probs=26.9
Q ss_pred cCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccch-hhccCCccceeeccCc
Q 043964 461 HLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPE-GIGKLINMKHLLNERT 518 (713)
Q Consensus 461 ~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 518 (713)
+|++|++++|. +..+| ..+..+++|++|++++|. +..+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 34455555544 44444 234445555555555444 444443 2455555555555544
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=2.4e-07 Score=91.29 Aligned_cols=249 Identities=16% Similarity=0.145 Sum_probs=139.3
Q ss_pred ccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc-------hhccCcCCccccCC
Q 043964 397 TCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN-------IEKLIHLKYLNLSC 469 (713)
Q Consensus 397 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-------i~~L~~Lr~L~L~~ 469 (713)
...+..+..+.++||.+...- ..+....+.+.+.||.-++++.-..+ ...++|+. +-..++|++|+||.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EA--a~~i~~~L~~~~~L~~v~~sd~ftGR--~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEA--ARAIAKVLASKKELREVNLSDMFTGR--LKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred hcccCceEEEeccCCchhHHH--HHHHHHHHhhcccceeeehHhhhcCC--cHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 345667778888888643211 23345556777788888887654211 12334443 33455788888888
Q ss_pred cccccc----cCccccCCCCCcEEeccCccCccccc--------------hhhccCCccceeeccCcccCCccc-----c
Q 043964 470 LTSIRK----LPEPLCELYNLEKLDISHCWYLKELP--------------EGIGKLINMKHLLNERTDSLGRMP-----A 526 (713)
Q Consensus 470 ~~~i~~----lp~~i~~L~~L~~L~l~~~~~l~~lp--------------~~i~~L~~L~~L~l~~~~~l~~~p-----~ 526 (713)
|..-.. +-.-+.+.+.|+.|.|.+|. +...- ..+..-++||.+...+|. +..-+ .
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~ 179 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAE 179 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHH
Confidence 762112 22335567888888888886 33211 113344678888877773 22222 3
Q ss_pred cCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCC----CCC-CCCCCCCcceeeeccCcc
Q 043964 527 GIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCN----QLP-PLGILPSLEKVIITYMIS 601 (713)
Q Consensus 527 ~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~----~l~-~l~~l~~L~~L~L~~~~~ 601 (713)
.+...+.|+++.+..+++..+ ....+-..+..+++|+.|+|.+|.... .+. .+..+|+|+.|.+++|-
T Consensus 180 ~~~~~~~leevr~~qN~I~~e------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl- 252 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPE------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL- 252 (382)
T ss_pred HHHhccccceEEEecccccCc------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-
Confidence 455567777777777665421 001222334578999999999884321 111 15567788999988874
Q ss_pred ceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccc
Q 043964 602 VKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCP 662 (713)
Q Consensus 602 l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 662 (713)
++.-+..-+......++|+|+.|.+.++.--.+- ....-......|.|+.|.|++|.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da----~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDA----ALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHH----HHHHHHHHhcchhhHHhcCCccc
Confidence 3222211111111235788999988765321110 00000012257889999998884
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=2.8e-06 Score=64.10 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=49.4
Q ss_pred CceeEEEeCCCCcccchhhcccCc-chhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCcc
Q 043964 431 TSLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCW 495 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~ 495 (713)
++|++|++++|. +..+|+ .+..+++|++|++++|. +..+| ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~------l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK------LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST------ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC------CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 468899999998 777774 67889999999999988 88777 467899999999999986
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=5.6e-06 Score=85.88 Aligned_cols=136 Identities=24% Similarity=0.349 Sum_probs=85.7
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhcc
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGK 506 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 506 (713)
+..+.+++.|++++|. +..+|. -..+|+.|.+++|..+..+|..+. .+|+.|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~------L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s--- 113 (426)
T PRK15386 48 IEEARASGRLYIKDCD------IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES--- 113 (426)
T ss_pred HHHhcCCCEEEeCCCC------CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc---
Confidence 4557889999999997 667772 123699999998887888887663 68999999999668888864
Q ss_pred CCccceeeccCc--ccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC
Q 043964 507 LINMKHLLNERT--DSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP 584 (713)
Q Consensus 507 L~~L~~L~l~~~--~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 584 (713)
|++|.+..+ ..+..+|.+ |+.|.+....... ....|.. -.++|+.|.+++|.... +|.
T Consensus 114 ---Le~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~--------~~~lp~~--LPsSLk~L~Is~c~~i~-LP~ 173 (426)
T PRK15386 114 ---VRSLEIKGSATDSIKNVPNG------LTSLSINSYNPEN--------QARIDNL--ISPSLKTLSLTGCSNII-LPE 173 (426)
T ss_pred ---cceEEeCCCCCcccccCcch------Hhheecccccccc--------ccccccc--cCCcccEEEecCCCccc-Ccc
Confidence 555555443 335556654 4445442211100 0111111 13678889998886543 332
Q ss_pred -CCCCCCcceeeecc
Q 043964 585 -LGILPSLEKVIITY 598 (713)
Q Consensus 585 -l~~l~~L~~L~L~~ 598 (713)
+. ++|+.|.++.
T Consensus 174 ~LP--~SLk~L~ls~ 186 (426)
T PRK15386 174 KLP--ESLQSITLHI 186 (426)
T ss_pred ccc--ccCcEEEecc
Confidence 32 5788888765
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1e-07 Score=91.66 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=115.3
Q ss_pred cCCccccCCccccc--ccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCccc--ccCcCCCCCCc
Q 043964 461 HLKYLNLSCLTSIR--KLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMP--AGIARLTSLRT 536 (713)
Q Consensus 461 ~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~ 536 (713)
.|+||||++.. ++ .+..-+..+++|+.|.+.|.+.-..+-..|.+=.+|+.|+++.|+.+.... --+.+++.|+.
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 59999999876 54 343445667888999999887434455567788899999999997665543 23578899999
Q ss_pred CCceecCCCCcccCCCCCCccCCcccc-CCCCCcEEEeccCCC-CC--CCCC-CCCCCCcceeeeccCccceEeCccccC
Q 043964 537 FDEFHVSRGKAVDGHKGCNNVFPNWMM-SLTNPRSLELILCEN-CN--QLPP-LGILPSLEKVIITYMISVKRVGNEFLG 611 (713)
Q Consensus 537 L~~~~~~~~~ei~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~-~~--~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~ 611 (713)
|+++.|....+ .+...+. --++|+.|+|++|.. +. .+.. ...+|+|..|+|++|-.++. +...
T Consensus 265 LNlsWc~l~~~---------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---~~~~ 332 (419)
T KOG2120|consen 265 LNLSWCFLFTE---------KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---DCFQ 332 (419)
T ss_pred cCchHhhccch---------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc---hHHH
Confidence 99988765431 0111111 236788888888852 11 2222 35678888888888766543 1111
Q ss_pred CcccccCcccceeecccccccccccccccccccccccccccccccccccc
Q 043964 612 IEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSC 661 (713)
Q Consensus 612 ~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 661 (713)
..-.|+.|++|.++.|..+.--.... ...+|+|.+|++.+|
T Consensus 333 --~~~kf~~L~~lSlsRCY~i~p~~~~~-------l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 --EFFKFNYLQHLSLSRCYDIIPETLLE-------LNSKPSLVYLDVFGC 373 (419)
T ss_pred --HHHhcchheeeehhhhcCCChHHeee-------eccCcceEEEEeccc
Confidence 12367788888887776543211111 236778888888777
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=1.9e-05 Score=82.02 Aligned_cols=137 Identities=19% Similarity=0.241 Sum_probs=90.1
Q ss_pred hhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCC
Q 043964 456 IEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLR 535 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~ 535 (713)
+..+.++++|++++|. ++.+|. + ..+|++|.+++|..+..+|..+ ..+|++|.+++|..+..+|..+.
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe------ 115 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVR------ 115 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccc------
Confidence 5567899999999996 999993 2 3479999999999899999765 36899999999988888886543
Q ss_pred cCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCC--CCCCCCCCC-CCcceeeeccCccceEeCccccCC
Q 043964 536 TFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENC--NQLPPLGIL-PSLEKVIITYMISVKRVGNEFLGI 612 (713)
Q Consensus 536 ~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~--~~l~~l~~l-~~L~~L~L~~~~~l~~~~~~~~~~ 612 (713)
.|.+...... ....+| ++|+.|.+.++... ..+| ..| ++|+.|.+++|..+.. +..
T Consensus 116 ~L~L~~n~~~--------~L~~LP------ssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~L-P~~---- 174 (426)
T PRK15386 116 SLEIKGSATD--------SIKNVP------NGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNIIL-PEK---- 174 (426)
T ss_pred eEEeCCCCCc--------ccccCc------chHhheeccccccccccccc--cccCCcccEEEecCCCcccC-ccc----
Confidence 3333322111 011244 35677777543221 1112 123 6899999998875421 110
Q ss_pred cccccCcccceeecccc
Q 043964 613 EIIIAFPKLKSLTISWM 629 (713)
Q Consensus 613 ~~~~~f~~L~~L~l~~~ 629 (713)
-.++|+.|.++.+
T Consensus 175 ----LP~SLk~L~ls~n 187 (426)
T PRK15386 175 ----LPESLQSITLHIE 187 (426)
T ss_pred ----ccccCcEEEeccc
Confidence 2248899988653
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.2e-05 Score=55.63 Aligned_cols=38 Identities=37% Similarity=0.506 Sum_probs=19.8
Q ss_pred cCCccccCCcccccccCccccCCCCCcEEeccCccCcccc
Q 043964 461 HLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKEL 500 (713)
Q Consensus 461 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l 500 (713)
+|++|++++|. ++.+|..+++|++|++|++++|. +..+
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 45555555555 55555555555555555555554 4443
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=4.5e-06 Score=90.12 Aligned_cols=81 Identities=28% Similarity=0.344 Sum_probs=38.3
Q ss_pred ccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccC
Q 043964 428 EKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKL 507 (713)
Q Consensus 428 ~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 507 (713)
..++.|..|++.++. +..+...+..+.+|++|++++|. |..+.. +..|..|+.|++.+|. +..++. +..+
T Consensus 92 ~~~~~l~~l~l~~n~------i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~-~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNK------IEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDISG-LESL 161 (414)
T ss_pred ccccceeeeeccccc------hhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhccC-Cccc
Confidence 344455555555555 33333334445555555555554 444442 4444455555555554 443322 3334
Q ss_pred CccceeeccCc
Q 043964 508 INMKHLLNERT 518 (713)
Q Consensus 508 ~~L~~L~l~~~ 518 (713)
++|+.+++++|
T Consensus 162 ~~L~~l~l~~n 172 (414)
T KOG0531|consen 162 KSLKLLDLSYN 172 (414)
T ss_pred hhhhcccCCcc
Confidence 55555555554
No 50
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.81 E-value=1.7e-05 Score=81.53 Aligned_cols=42 Identities=24% Similarity=-0.010 Sum_probs=36.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecccc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSETF 238 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~ 238 (713)
-...+|+|.+|+||||||+.||++.... +|+.++||.+++++
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER 210 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDER 210 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCc
Confidence 3567999999999999999999975544 89999999999765
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.72 E-value=1.4e-06 Score=93.50 Aligned_cols=108 Identities=24% Similarity=0.267 Sum_probs=65.0
Q ss_pred HHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCcc-ccCCCCCcEEeccCccCccccch
Q 043964 424 KELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKELPE 502 (713)
Q Consensus 424 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~ 502 (713)
+..+.-++.|+.|+|++|++ ... ..+..|++|++|||++|. +..+|.- .... +|+.|.+++|. ++++ .
T Consensus 180 D~SLqll~ale~LnLshNk~------~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~-l~tL-~ 248 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKF------TKV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNA-LTTL-R 248 (1096)
T ss_pred HHHHHHHHHhhhhccchhhh------hhh-HHHHhcccccccccccch-hccccccchhhh-hheeeeecccH-HHhh-h
Confidence 34455666777777777773 333 256677777777777777 6666641 1112 37777777776 6666 4
Q ss_pred hhccCCccceeeccCcccCCccc--ccCcCCCCCCcCCceecC
Q 043964 503 GIGKLINMKHLLNERTDSLGRMP--AGIARLTSLRTFDEFHVS 543 (713)
Q Consensus 503 ~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~ 543 (713)
+|.+|.+|++|+++.|- +.... .-++.|.+|..|++-++.
T Consensus 249 gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 57777777777777762 22111 223455566666665554
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=2.2e-05 Score=88.66 Aligned_cols=129 Identities=26% Similarity=0.276 Sum_probs=78.4
Q ss_pred CCceEEEEEEecCCCC--CCc-cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC
Q 043964 377 DKKVCHLMLIIGEGAS--FPV-STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP 453 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~--~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp 453 (713)
..+.++|.+.+...-. .+. ...-+|.|++|.+.+..+... .+...+.++++|+.||+++++ +..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-----dF~~lc~sFpNL~sLDIS~Tn------I~nl- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-----DFSQLCASFPNLRSLDISGTN------ISNL- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-----hHHHHhhccCccceeecCCCC------ccCc-
Confidence 4556667665532210 011 123468888888877653221 144556788888888888888 4444
Q ss_pred cchhccCcCCccccCCcccccccC--ccccCCCCCcEEeccCccCccccchh-------hccCCccceeeccCcc
Q 043964 454 RNIEKLIHLKYLNLSCLTSIRKLP--EPLCELYNLEKLDISHCWYLKELPEG-------IGKLINMKHLLNERTD 519 (713)
Q Consensus 454 ~~i~~L~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~ 519 (713)
..|++|++|+.|.+++-. ++.-+ ..+..|++|++||++..... .-|.. -..|++||.|+.+++.
T Consensus 189 ~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcc
Confidence 567888888888887755 44322 23667888888888866532 22211 1237788888877663
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=3e-05 Score=53.56 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=34.4
Q ss_pred CceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCc
Q 043964 431 TSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPE 478 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~ 478 (713)
++|++|++++|. +..+|+.+++|++|++|++++|. +.++|.
T Consensus 1 ~~L~~L~l~~N~------i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ------ITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-------SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCC------CcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 478999999999 78888889999999999999998 887764
No 54
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.61 E-value=4.5e-05 Score=75.19 Aligned_cols=42 Identities=26% Similarity=0.027 Sum_probs=36.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEeccc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSET 237 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 237 (713)
.-..++|+|.+|+|||||++.+|++.... +|+.++|+++++.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~e 56 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDE 56 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccC
Confidence 34588999999999999999999975444 8999999998865
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=9.9e-05 Score=83.45 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=93.7
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCcc
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEP 479 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~ 479 (713)
-.+|++|++.|.. .+...++..+-..+|.||.|.+++-.+.. ..+-.-..++++|+.||+|++. +..+ ..
T Consensus 121 r~nL~~LdI~G~~----~~s~~W~~kig~~LPsL~sL~i~~~~~~~----~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSE----LFSNGWPKKIGTMLPSLRSLVISGRQFDN----DDFSQLCASFPNLRSLDISGTN-ISNL-SG 190 (699)
T ss_pred HHhhhhcCccccc----hhhccHHHHHhhhCcccceEEecCceecc----hhHHHHhhccCccceeecCCCC-ccCc-HH
Confidence 3588899998865 34556666767788999999998876421 1222345678889999999988 8888 57
Q ss_pred ccCCCCCcEEeccCccCccccc--hhhccCCccceeeccCcccCCcc--c----ccCcCCCCCCcCCceecCCC
Q 043964 480 LCELYNLEKLDISHCWYLKELP--EGIGKLINMKHLLNERTDSLGRM--P----AGIARLTSLRTFDEFHVSRG 545 (713)
Q Consensus 480 i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~--p----~~i~~l~~L~~L~~~~~~~~ 545 (713)
|++|+|||+|.+++-. .+.-+ ..+.+|++|++|+++........ . +--..|++|+.|+.++....
T Consensus 191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999999999888755 33322 24788999999999976443221 1 11234778888887755443
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=4.4e-06 Score=89.80 Aligned_cols=125 Identities=21% Similarity=0.178 Sum_probs=89.7
Q ss_pred CceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchh
Q 043964 378 KKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIE 457 (713)
Q Consensus 378 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 457 (713)
.++...++..+....+-.++.-++.|++|+++.|.+ .+ .. ++..++.|+.|||++|. +..+|.-=.
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~------~~-v~-~Lr~l~~LkhLDlsyN~------L~~vp~l~~ 229 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF------TK-VD-NLRRLPKLKHLDLSYNC------LRHVPQLSM 229 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh------hh-hH-HHHhcccccccccccch------hccccccch
Confidence 334444444444333334555678999999999963 22 22 57899999999999999 666664211
Q ss_pred ccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccc--hhhccCCccceeeccCcc
Q 043964 458 KLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELP--EGIGKLINMKHLLNERTD 519 (713)
Q Consensus 458 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 519 (713)
.=.+|..|.+++|. ++.|- .|.+|.+|+.||++.|- +...- .-++.|..|+.|+|.||.
T Consensus 230 ~gc~L~~L~lrnN~-l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 230 VGCKLQLLNLRNNA-LTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhheeeeecccH-HHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 12349999999999 88887 49999999999999875 43321 126788899999999984
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.49 E-value=3.7e-05 Score=83.11 Aligned_cols=107 Identities=25% Similarity=0.348 Sum_probs=82.4
Q ss_pred cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccc
Q 043964 396 STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK 475 (713)
Q Consensus 396 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~ 475 (713)
....+.+|..|++.+|.+ .. ....+..+.+|++|++++|. +..+ ..+..+..|+.|++++|. +..
T Consensus 90 ~l~~~~~l~~l~l~~n~i------~~-i~~~l~~~~~L~~L~ls~N~------I~~i-~~l~~l~~L~~L~l~~N~-i~~ 154 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKI------EK-IENLLSSLVNLQVLDLSFNK------ITKL-EGLSTLTLLKELNLSGNL-ISD 154 (414)
T ss_pred ccccccceeeeeccccch------hh-cccchhhhhcchheeccccc------cccc-cchhhccchhhheeccCc-chh
Confidence 356678889999988863 22 22225678999999999999 5555 346777789999999998 888
Q ss_pred cCccccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcc
Q 043964 476 LPEPLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTD 519 (713)
Q Consensus 476 lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 519 (713)
++. +..+.+|+.|++++|. +..++.. +..+.+|+.+++.++.
T Consensus 155 ~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 155 ISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 874 6669999999999998 6666554 5788899999998884
No 58
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.46 E-value=0.00012 Score=69.41 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=32.7
Q ss_pred cEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchH
Q 043964 170 EIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHE 220 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~ 220 (713)
.+|||+++.+++...|. ... ....+.+-|+|.+|+|||||++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~--~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQ--SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTS--S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHH--cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999996 222 3357999999999999999999999853
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=1.5e-05 Score=68.11 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=37.5
Q ss_pred cCcCCccccCCcccccccCccccC-CCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcC
Q 043964 459 LIHLKYLNLSCLTSIRKLPEPLCE-LYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTF 537 (713)
Q Consensus 459 L~~Lr~L~L~~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 537 (713)
..+|...+|++|. ++++|+.+.. .+.+.+|++.+|. +.++|..+..++.|+.|+++.| .+...|..|..|.+|-.|
T Consensus 52 ~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence 3344444555555 5555544332 2355555555554 5555555555555555555555 233334434334444444
Q ss_pred C
Q 043964 538 D 538 (713)
Q Consensus 538 ~ 538 (713)
+
T Consensus 129 d 129 (177)
T KOG4579|consen 129 D 129 (177)
T ss_pred c
Confidence 3
No 60
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.18 E-value=0.00031 Score=74.06 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=53.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEeccccccccc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSETFEEIAF 243 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~f 243 (713)
.++++.+...+.++..|.. .+.|-++|++|+||||+|+.+.+.......|+.+.||++++.++...|
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDF 241 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDF 241 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHH
Confidence 3578888889999999873 335778999999999999999885433456888999999988865444
No 61
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.00013 Score=67.72 Aligned_cols=34 Identities=32% Similarity=0.621 Sum_probs=27.5
Q ss_pred EEEEEecCCchhHHHHHHHhchHHHH-hhCCceeE
Q 043964 198 IISIVGMGGIGKTTLAQLDCNHEEVI-RKFDKILW 231 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~~~~~-~~F~~~~w 231 (713)
.|.|+|++|+||||||+.+++.-.+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999864433 45777775
No 62
>PTZ00202 tuzin; Provisional
Probab=97.14 E-value=0.0038 Score=65.02 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=41.1
Q ss_pred CCCCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 166 IDEEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 166 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+...++||+.+...+...|...+. +..+++.|.|++|+|||||++.+..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~ 308 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVR 308 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999998874332 2456999999999999999999886
No 63
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.06 E-value=0.00066 Score=73.08 Aligned_cols=52 Identities=23% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchH
Q 043964 167 DEEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHE 220 (713)
Q Consensus 167 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~ 220 (713)
.++.++||+++.+++...|..... +.....+-|+|++|+||||+++.++++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999854321 1233456799999999999999999853
No 64
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.03 E-value=0.00068 Score=72.15 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=40.3
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++.++||+++.++|...|..... +.....+-|+|++|+||||+++.++++
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999874221 123456899999999999999999985
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=0.00013 Score=62.56 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=52.9
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCcc
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEP 479 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~ 479 (713)
..+|...++++|.+ .++++.+-.+++.+..|+|++|. +..+|..+..++.||.|+++.|. +...|.-
T Consensus 52 ~~el~~i~ls~N~f------k~fp~kft~kf~t~t~lNl~~ne------isdvPeE~Aam~aLr~lNl~~N~-l~~~p~v 118 (177)
T KOG4579|consen 52 GYELTKISLSDNGF------KKFPKKFTIKFPTATTLNLANNE------ISDVPEELAAMPALRSLNLRFNP-LNAEPRV 118 (177)
T ss_pred CceEEEEecccchh------hhCCHHHhhccchhhhhhcchhh------hhhchHHHhhhHHhhhcccccCc-cccchHH
Confidence 33455555555542 23344444555566666666666 55666666666666666666666 6666666
Q ss_pred ccCCCCCcEEeccCccCccccchh
Q 043964 480 LCELYNLEKLDISHCWYLKELPEG 503 (713)
Q Consensus 480 i~~L~~L~~L~l~~~~~l~~lp~~ 503 (713)
|..|.+|-.||..++. ...+|..
T Consensus 119 i~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHHhHHHhcCCCCc-cccCcHH
Confidence 6666666666666665 5555544
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.98 E-value=0.001 Score=60.13 Aligned_cols=41 Identities=29% Similarity=0.264 Sum_probs=33.7
Q ss_pred eccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 173 GRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 173 G~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
|++....++...+... ....+-|+|.+|+||||+|+.+++.
T Consensus 2 ~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 2 GQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred chHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 6777888888887632 3457889999999999999999984
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.98 E-value=8.2e-05 Score=82.52 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCC-CcccchhhcccCcchhccCcCCccccCCcccccccC-
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKW-SISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLP- 477 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~-~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp- 477 (713)
++.|+.|.+.++.. +.......+...++.|+.|+++++ ...... ....+.....+.+|+.|+++++..+...-
T Consensus 187 ~~~L~~l~l~~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSK----ITDDSLDALALKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhccccc----CChhhHHHHHhhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 56677776666531 112223444667788888888763 210000 00111233445778888888776433221
Q ss_pred cccc-CCCCCcEEeccCccCcc--ccchhhccCCccceeeccCcccC
Q 043964 478 EPLC-ELYNLEKLDISHCWYLK--ELPEGIGKLINMKHLLNERTDSL 521 (713)
Q Consensus 478 ~~i~-~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l 521 (713)
..+. .+++|++|.+.+|..+. .+-....++++|++|++++|..+
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1122 26688888877776422 22223455677888888877554
No 68
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.94 E-value=0.00059 Score=69.98 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=41.9
Q ss_pred cEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 170 EIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+++|.++.++++++++.....+.....++++++|++|.||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997644321335689999999999999999999885
No 69
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.92 E-value=0.00045 Score=68.25 Aligned_cols=43 Identities=30% Similarity=0.306 Sum_probs=34.9
Q ss_pred EEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 171 IYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 171 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++||+++.++|.+++..+ ....+.|+|..|+|||||++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH
Confidence 589999999999988742 3568889999999999999999884
No 70
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.90 E-value=0.013 Score=52.44 Aligned_cols=108 Identities=15% Similarity=0.234 Sum_probs=79.8
Q ss_pred hhhhHHHHHHHHhccchHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHhhHhHH
Q 043964 2 VNAVVSPLLEQLISFSTEEVTQQVKLVKGVEQEVEKLTSHLQTIQAVLNDAEQRQVK-EKSIRVWLGRLKDVSYDIENVL 80 (713)
Q Consensus 2 a~~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~Wl~~l~~~~~d~ed~l 80 (713)
++|+++.+++.+.. .+.+..+....++.-+++|..+++.|..++++.+..... +..-+.=++++.+...++++++
T Consensus 7 ~gaalG~~~~eLlk----~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 7 GGAALGAVFGELLK----AVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 35666777777776 888888888999999999999999999999999876432 3333778889999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccCccccchhhHhHHHHHHHHHHHHHHHHHHHh
Q 043964 81 DEWITARRRLQMEQNAHSAQKQVSSCFPASSISFKKIILRQDIAVKIKGINKKLGVIAT 139 (713)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~ 139 (713)
+.|..- + +.++...++.+++|+++.+.+....+
T Consensus 83 ~k~sk~-----------------~---------r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 83 EKCSKV-----------------R---------RWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHhccc-----------------c---------HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 887421 1 12334455667777777776665543
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.00032 Score=68.12 Aligned_cols=89 Identities=25% Similarity=0.316 Sum_probs=59.9
Q ss_pred cCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccc-cccc
Q 043964 398 CRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTS-IRKL 476 (713)
Q Consensus 398 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~-i~~l 476 (713)
..+.+++.+++.+|.++.-+ + ...++.+++.|++|+|+.|+++. .+..+| -.+.+|+.|-|.++.. .+.+
T Consensus 68 ~~~~~v~elDL~~N~iSdWs---e-I~~ile~lP~l~~LNls~N~L~s--~I~~lp---~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWS---E-IGAILEQLPALTTLNLSCNSLSS--DIKSLP---LPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred HHhhhhhhhhcccchhccHH---H-HHHHHhcCccceEeeccCCcCCC--ccccCc---ccccceEEEEEcCCCCChhhh
Confidence 35788999999998743211 1 34557899999999999998532 123333 3456899999888762 1244
Q ss_pred CccccCCCCCcEEeccCcc
Q 043964 477 PEPLCELYNLEKLDISHCW 495 (713)
Q Consensus 477 p~~i~~L~~L~~L~l~~~~ 495 (713)
-.+...++.++.|.++.|.
T Consensus 139 ~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhhhcchhhhhhhhccch
Confidence 4556677777777777664
No 72
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.82 E-value=0.00081 Score=58.77 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999877
No 73
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0029 Score=69.19 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=40.5
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+=+|.++-+++|++.|.-..-...-.-.+++.||++|+|||.|++.|.+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH
Confidence 345689999999999999654321123447999999999999999999987
No 74
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.76 E-value=0.0011 Score=68.68 Aligned_cols=41 Identities=22% Similarity=-0.002 Sum_probs=34.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEeccc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSET 237 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 237 (713)
-..++|+|.+|.|||||++.+++.-.. ++|+..+||.++++
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgE 208 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDE 208 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCC
Confidence 457899999999999999999995322 37999999999864
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.70 E-value=0.0028 Score=58.39 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=32.9
Q ss_pred cCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhcc-CCccceeeccCc
Q 043964 461 HLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGK-LINMKHLLNERT 518 (713)
Q Consensus 461 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~-L~~L~~L~l~~~ 518 (713)
+...+||++|. +..++. +..+..|.+|.+.+|+ +..+-+.+.. +++|..|.+.+|
T Consensus 43 ~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccc-hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCc
Confidence 45566677666 555553 5566677777777666 5554444433 445666666665
No 76
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.54 E-value=0.0017 Score=61.68 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=31.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+++||.+.-++++.-++..... +++.+.-+-.||++|+||||||+.+.+.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc
Confidence 5689988766665443331100 0235777889999999999999999884
No 77
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.54 E-value=0.0028 Score=58.37 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=59.1
Q ss_pred CCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCcccc
Q 043964 484 YNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMM 563 (713)
Q Consensus 484 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~ 563 (713)
.+...+||++|. +..++. +..++.|..|.+++|... .+.+.++ .
T Consensus 42 d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt-~I~p~L~---------------------------------~ 85 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRIT-RIDPDLD---------------------------------T 85 (233)
T ss_pred cccceecccccc-hhhccc-CCCccccceEEecCCcce-eeccchh---------------------------------h
Confidence 456778888876 555543 666777777777776332 2222221 1
Q ss_pred CCCCCcEEEeccCC--CCCCCCCCCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccc
Q 043964 564 SLTNPRSLELILCE--NCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWM 629 (713)
Q Consensus 564 ~l~~L~~L~L~~~~--~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~ 629 (713)
.+++|..|.|.+|+ .+.++.++..+|.|++|.+-+.+.-..-. +....+-.+|+|+.|++..-
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~---YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN---YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccC---ceeEEEEecCcceEeehhhh
Confidence 34566666666664 23456666677777777665432111111 11111236778888887654
No 78
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0082 Score=65.54 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=41.1
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+.+=+|+++-++.|++.+.-+.-.++-+-.+++.+|++|||||.+|+.|..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 345689999999999998654322234568999999999999999999987
No 79
>PRK06696 uridine kinase; Validated
Probab=96.51 E-value=0.0046 Score=60.52 Aligned_cols=42 Identities=26% Similarity=0.217 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 174 RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 174 ~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
|.+-+++|.+.+.... .+...+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4556677777776533 23688999999999999999999987
No 80
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.49 E-value=0.014 Score=55.28 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=67.3
Q ss_pred EEEEEecCCchhHHHHHHHhchHHHHhh-CCceeEEEecccccc-ccccCCC-chhchHHHHHHHHHHHhcCCCCchhHH
Q 043964 198 IISIVGMGGIGKTTLAQLDCNHEEVIRK-FDKILWVCVSETFEE-IAFHGRS-IEECEKLEQIGQKIASRCKGLPLAAKC 274 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~-~~f~~~~-~~~~~~l~~i~~~i~~~c~GlPlai~c 274 (713)
.|+|+|-||+||||+|..+... -.+++ |+. .=|....+++. .+++-.. ...-...+++.++....-.|.|-
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~V-LvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~---- 75 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNV-LVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPP---- 75 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceE-EEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCc----
Confidence 6899999999999999885442 12222 322 22333444443 3344332 11123344444444444344331
Q ss_pred HhhhccCCCCCccChHHHHHHHHHcCccccCCCccHHHHHHHHHHHHHhCcCCcccccCCCCceeEEEeChHHHHHHHHh
Q 043964 275 FSYCAIFPKDFNIMKEKLITMWMAQGYFSVEQDEEVDIIGEEYFNILATHSFFQEFKKDDDNLIVACKMHDIVHDFAQFV 354 (713)
Q Consensus 275 fl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~e~~~~~~~~eL~~~~ll~~~~~~~~~~~~~~~mhdlv~dla~~i 354 (713)
-++|-+++.+ .+..++|..+--+--++........|.-.+|-|.-++|.+..++
T Consensus 76 ---~~~fk~~~~~-----------------------~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l 129 (255)
T COG3640 76 ---GEMFKENPLV-----------------------SDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHL 129 (255)
T ss_pred ---ccccccCcch-----------------------hhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHH
Confidence 1233333322 23333344333333344444444445556799999999999988
Q ss_pred hcc
Q 043964 355 SQN 357 (713)
Q Consensus 355 ~~~ 357 (713)
..+
T Consensus 130 ~~~ 132 (255)
T COG3640 130 ILN 132 (255)
T ss_pred hcc
Confidence 766
No 81
>PTZ00301 uridine kinase; Provisional
Probab=96.46 E-value=0.0038 Score=59.99 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=24.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCC
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFD 227 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~ 227 (713)
..+|||.|.+|.||||||+.+.+ ++...+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~--~l~~~~~ 32 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS--ELMAHCG 32 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH--HHHhhcC
Confidence 57999999999999999999987 4544443
No 82
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.43 E-value=0.0016 Score=67.45 Aligned_cols=50 Identities=30% Similarity=0.379 Sum_probs=38.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++..++++..++...... ......+-++|++|+||||||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998888632211 123455779999999999999999873
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.40 E-value=0.00029 Score=78.10 Aligned_cols=117 Identities=23% Similarity=0.207 Sum_probs=68.2
Q ss_pred HHHHHccCCceeEEEeCCCCcccchhhcc--cCcchhccCcCCccccCCc-ccccccC----ccccCCCCCcEEeccCcc
Q 043964 423 LKELFEKLTSLRVLNIGKWSISRWYFILE--IPRNIEKLIHLKYLNLSCL-TSIRKLP----EPLCELYNLEKLDISHCW 495 (713)
Q Consensus 423 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~--lp~~i~~L~~Lr~L~L~~~-~~i~~lp----~~i~~L~~L~~L~l~~~~ 495 (713)
.......+++|+.|.+.++.. +.. +-......++|+.|+++++ ..+...+ .....+++|+.|++++|.
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSK-----ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred HHHHHhhCchhhHhhhccccc-----CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 334445578888888887753 222 3344566788999998873 2122211 233445788888888887
Q ss_pred Ccccc--chhhccCCccceeeccCcccCCc--ccccCcCCCCCCcCCceecCC
Q 043964 496 YLKEL--PEGIGKLINMKHLLNERTDSLGR--MPAGIARLTSLRTFDEFHVSR 544 (713)
Q Consensus 496 ~l~~l--p~~i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~ 544 (713)
.+... ..-...+++|++|.+.+|..+.. +-.....+++|++|++..+..
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 43221 11112367888888777754221 112234566777777776554
No 84
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.36 E-value=0.0026 Score=63.44 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=64.7
Q ss_pred CCceEEEEEEecCCCCC-----CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcc
Q 043964 377 DKKVCHLMLIIGEGASF-----PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILE 451 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~-----~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~ 451 (713)
++++|-+....+...+. ...+...+.|..+.+..|......+ ......|..+++|++|||.+|.++... -..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~eg-s~~ 232 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEG-SVA 232 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHH-HHH
Confidence 44555555555444322 1233444566666666554433221 223444566666666666666643100 012
Q ss_pred cCcchhccCcCCccccCCcccccc-----cCcc-ccCCCCCcEEeccCccCccc----cchhhccCCccceeeccCc
Q 043964 452 IPRNIEKLIHLKYLNLSCLTSIRK-----LPEP-LCELYNLEKLDISHCWYLKE----LPEGIGKLINMKHLLNERT 518 (713)
Q Consensus 452 lp~~i~~L~~Lr~L~L~~~~~i~~-----lp~~-i~~L~~L~~L~l~~~~~l~~----lp~~i~~L~~L~~L~l~~~ 518 (713)
+...+..+++|+.|++++|. ++. +-.. -...++|++|.+.+|..... +-..+...+.|+.|+|++|
T Consensus 233 LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 23344555666666666665 332 1111 11245666666666652111 1122334555666666655
No 85
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.35 E-value=0.042 Score=62.13 Aligned_cols=61 Identities=28% Similarity=0.328 Sum_probs=44.8
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCC---ceeEEEec
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFD---KILWVCVS 235 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~---~~~wv~vs 235 (713)
++++|++..+..+.+.+... ....+.|+|.+|+||||+|+.+++..+....+. ..-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 46899999888888877522 345799999999999999999998644434332 34566654
No 86
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.24 E-value=0.0024 Score=66.65 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=38.4
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+++.++.+..++...... ......+-|+|++|+||||||+.+.+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 56999999999888877532110 224556789999999999999999884
No 87
>PRK07261 topology modulation protein; Provisional
Probab=96.22 E-value=0.0028 Score=59.08 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 88
>PRK07667 uridine kinase; Provisional
Probab=96.21 E-value=0.011 Score=56.49 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++|.+.+.... ....+|||-|.+|.||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456777775443 24589999999999999999999873
No 89
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.0063 Score=54.07 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=26.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhh-CCceeEE
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRK-FDKILWV 232 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~-F~~~~wv 232 (713)
..-|+|.||+|+||||+++.+.+. .+.. |...=++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~--L~~~g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK--LREKGYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH--HHhcCceeeeEE
Confidence 456899999999999999999984 4443 6544333
No 90
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.05 E-value=0.019 Score=66.44 Aligned_cols=51 Identities=29% Similarity=0.401 Sum_probs=39.4
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+.+|.+.-++.|+++|............++.++|.+|+||||+|+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999988742211122346899999999999999999887
No 91
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.03 E-value=0.0043 Score=59.29 Aligned_cols=21 Identities=52% Similarity=0.629 Sum_probs=20.1
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
||||.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 92
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.93 E-value=0.0044 Score=67.01 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=39.7
Q ss_pred cEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 170 EIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+++|.++.+++|++.|......-+..-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999332211123557999999999999999999988
No 93
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.0041 Score=59.84 Aligned_cols=82 Identities=27% Similarity=0.146 Sum_probs=37.8
Q ss_pred cCcCCccccCCc--ccccccCccccCCCCCcEEeccCccCccc---cchhhccCCccceeeccCcccCCccc---ccCcC
Q 043964 459 LIHLKYLNLSCL--TSIRKLPEPLCELYNLEKLDISHCWYLKE---LPEGIGKLINMKHLLNERTDSLGRMP---AGIAR 530 (713)
Q Consensus 459 L~~Lr~L~L~~~--~~i~~lp~~i~~L~~L~~L~l~~~~~l~~---lp~~i~~L~~L~~L~l~~~~~l~~~p---~~i~~ 530 (713)
|++|++|.++.| .....++...-++++|++|++++|+ +.. +++ ...+.+|..|++.+|....-.- ..+.-
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch-hhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 445666666655 3222333334444666666666655 322 211 3444555566666553322110 12333
Q ss_pred CCCCCcCCceec
Q 043964 531 LTSLRTFDEFHV 542 (713)
Q Consensus 531 l~~L~~L~~~~~ 542 (713)
+++|..|+.+.+
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 555555554443
No 94
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.0062 Score=62.25 Aligned_cols=44 Identities=30% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCCCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 166 IDEEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 166 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+.+..++|-+.... +++. .+.+.-.=.||++|+||||||+.+..
T Consensus 27 vGQ~HLlg~~~~lr---r~v~------~~~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 27 VGQEHLLGEGKPLR---RAVE------AGHLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred cChHhhhCCCchHH---HHHh------cCCCceeEEECCCCCCHHHHHHHHHH
Confidence 34445666555433 3333 22455566899999999999998876
No 95
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.86 E-value=0.0063 Score=58.97 Aligned_cols=24 Identities=42% Similarity=0.414 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|.|.+|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999887
No 96
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.82 E-value=0.0059 Score=53.79 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=19.4
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|+|.|+.|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998884
No 97
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.00043 Score=66.59 Aligned_cols=81 Identities=20% Similarity=0.135 Sum_probs=46.8
Q ss_pred cCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCccc--ccCcCCCCCCc
Q 043964 459 LIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMP--AGIARLTSLRT 536 (713)
Q Consensus 459 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~ 536 (713)
|.+.+.|+..+|. +..+. -+.+++.|++|.|+-|+ +..|-+ +..+++|+.|+|..|. +..+. .-+.++++|++
T Consensus 18 l~~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCC-ccHHH-HHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhh
Confidence 4455566666665 55553 23456677777777665 555533 6677777777777662 22221 22456666777
Q ss_pred CCceecCC
Q 043964 537 FDEFHVSR 544 (713)
Q Consensus 537 L~~~~~~~ 544 (713)
|.+..+..
T Consensus 93 LWL~ENPC 100 (388)
T KOG2123|consen 93 LWLDENPC 100 (388)
T ss_pred HhhccCCc
Confidence 76665543
No 98
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.77 E-value=0.0072 Score=58.43 Aligned_cols=24 Identities=42% Similarity=0.345 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 99
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.73 E-value=0.031 Score=65.30 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=37.8
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.++.++.|.+++..........-.++.++|++|+||||+|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999988765321100123358999999999999999999873
No 100
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.71 E-value=0.013 Score=55.02 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=28.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEE
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWV 232 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv 232 (713)
...+|.++|+.|.||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999998 455556555554
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.69 E-value=0.0088 Score=59.98 Aligned_cols=58 Identities=28% Similarity=0.388 Sum_probs=36.4
Q ss_pred cCCCCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEec
Q 043964 165 FIDEEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVS 235 (713)
Q Consensus 165 ~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 235 (713)
++.+..++|.+.- +.-+.+ .+.+.-+-.||++|.||||||+.+.+..+-.. ..||..|
T Consensus 140 yvGQ~hlv~q~gl----lrs~ie-----q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelS 197 (554)
T KOG2028|consen 140 YVGQSHLVGQDGL----LRSLIE-----QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELS 197 (554)
T ss_pred hcchhhhcCcchH----HHHHHH-----cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEe
Confidence 3445556665443 333332 23566777999999999999999988533222 3455555
No 102
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.68 E-value=0.014 Score=57.35 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=35.1
Q ss_pred cchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEec
Q 043964 175 VGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVS 235 (713)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 235 (713)
+..++.+.+++.. .....|-|+|..|+||||||+.+++. ........+++.++
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA 75 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH
Confidence 3456666666542 24567889999999999999999985 32233345555443
No 103
>PRK08233 hypothetical protein; Provisional
Probab=95.65 E-value=0.0083 Score=56.66 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999998876
No 104
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.64 E-value=0.0066 Score=65.44 Aligned_cols=45 Identities=27% Similarity=0.298 Sum_probs=32.6
Q ss_pred CcEEeccchHHH---HHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+++||.+..+.. +.+++.. .....+-++|++|+||||+|+.+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 357777655444 6666642 24556778999999999999999873
No 105
>PRK06547 hypothetical protein; Provisional
Probab=95.63 E-value=0.014 Score=54.23 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhch
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
....+|+|.|..|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998873
No 106
>PF05729 NACHT: NACHT domain
Probab=95.61 E-value=0.011 Score=54.74 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.5
Q ss_pred EEEEEEecCCchhHHHHHHHhchH
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHE 220 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~ 220 (713)
+++-|.|.+|+||||+++.+..+-
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999999853
No 107
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.59 E-value=0.008 Score=46.33 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|+|.|..|+||||+|+.+-+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 108
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.56 E-value=0.0058 Score=58.88 Aligned_cols=247 Identities=14% Similarity=0.057 Sum_probs=115.6
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC-------cchhccCcCCccccCCccc
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-------RNIEKLIHLKYLNLSCLTS 472 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-------~~i~~L~~Lr~L~L~~~~~ 472 (713)
+..+..++++||.+.... ..++...+.+-++|++.+++....++ ...++| +.+-.+++|+..+||.|..
T Consensus 29 ~d~~~evdLSGNtigtEA--~e~l~~~ia~~~~L~vvnfsd~ftgr--~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 29 MDELVEVDLSGNTIGTEA--MEELCNVIANVRNLRVVNFSDAFTGR--DKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hcceeEEeccCCcccHHH--HHHHHHHHhhhcceeEeehhhhhhcc--cHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 556666777777532211 12234445666677777776543211 011222 2344566777777776652
Q ss_pred ccccCc----cccCCCCCcEEeccCccCccccch--------------hhccCCccceeeccCcccCCccc-----ccCc
Q 043964 473 IRKLPE----PLCELYNLEKLDISHCWYLKELPE--------------GIGKLINMKHLLNERTDSLGRMP-----AGIA 529 (713)
Q Consensus 473 i~~lp~----~i~~L~~L~~L~l~~~~~l~~lp~--------------~i~~L~~L~~L~l~~~~~l~~~p-----~~i~ 529 (713)
-...|+ -|.+-.+|.+|.+++|. +.-+.. .+..-+.|+......|. +...| ..+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~ 182 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLE 182 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHH
Confidence 223332 24555667777776665 332211 11223456666655552 22222 1222
Q ss_pred CCCCCCcCCceecCCCCcccCCCCCCccC--CccccCCCCCcEEEeccCCCCC----CCCC-CCCCCCcceeeeccCccc
Q 043964 530 RLTSLRTFDEFHVSRGKAVDGHKGCNNVF--PNWMMSLTNPRSLELILCENCN----QLPP-LGILPSLEKVIITYMISV 602 (713)
Q Consensus 530 ~l~~L~~L~~~~~~~~~ei~~~~~~~~~~--p~~~~~l~~L~~L~L~~~~~~~----~l~~-l~~l~~L~~L~L~~~~~l 602 (713)
.-.+|+++.+..+++..+ |... --.+..+.+|..|+|.+|.... .+.. +..-+.|+.|.+.+|- +
T Consensus 183 sh~~lk~vki~qNgIrpe-------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-l 254 (388)
T COG5238 183 SHENLKEVKIQQNGIRPE-------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-L 254 (388)
T ss_pred hhcCceeEEeeecCcCcc-------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-h
Confidence 224666666666554421 0000 0112257788888888874321 0111 3344567888887763 2
Q ss_pred eEeCc-cccCCcccccCcccceeecccccccccccccccccccccccccccccccccccc
Q 043964 603 KRVGN-EFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSC 661 (713)
Q Consensus 603 ~~~~~-~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 661 (713)
+.-+. .+...-.-..+|+|..|.+.....=.... .....+.....++|-|..|.+.++
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i-~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII-LDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCcee-eeechhhhhhcccHHHHHHHHccC
Confidence 11111 11100011246777777665422100000 000000111337888888888876
No 109
>PRK04195 replication factor C large subunit; Provisional
Probab=95.53 E-value=0.0081 Score=66.14 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=40.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.++.++++.+|+..-.. +...+.+-|+|++|+||||+|+++.++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5699999999999999874321 123678899999999999999999884
No 110
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.0024 Score=61.59 Aligned_cols=99 Identities=26% Similarity=0.238 Sum_probs=70.5
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCc-
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPE- 478 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~- 478 (713)
+.+.+-|++.|+.++ + -++..+|+.|.||.|+-|. +..+ ..+..+.+|+.|.|+.|. |.++-+
T Consensus 18 l~~vkKLNcwg~~L~------D--Isic~kMp~lEVLsLSvNk------IssL-~pl~rCtrLkElYLRkN~-I~sldEL 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD------D--ISICEKMPLLEVLSLSVNK------ISSL-APLQRCTRLKELYLRKNC-IESLDEL 81 (388)
T ss_pred HHHhhhhcccCCCcc------H--HHHHHhcccceeEEeeccc------cccc-hhHHHHHHHHHHHHHhcc-cccHHHH
Confidence 456677778777642 1 2346789999999999888 5555 347888899999999988 776653
Q ss_pred -cccCCCCCcEEeccCccCccccchh-----hccCCccceee
Q 043964 479 -PLCELYNLEKLDISHCWYLKELPEG-----IGKLINMKHLL 514 (713)
Q Consensus 479 -~i~~L~~L~~L~l~~~~~l~~lp~~-----i~~L~~L~~L~ 514 (713)
-+.+|++|++|-|..|....+-+.. +.-|++|+.|+
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 3567888888888877654444432 45677777775
No 111
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.49 E-value=0.014 Score=60.66 Aligned_cols=47 Identities=23% Similarity=0.190 Sum_probs=39.0
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-++++|.+...+.+..++..+. -..++-++|.+|+||||+|+.+++.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3578999999999999887422 3568888999999999999999874
No 112
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.43 E-value=0.022 Score=50.27 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=33.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHh---hCCceeEEEeccccccccccCCCchhchHHHHHHHHHHHhcC
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIR---KFDKILWVCVSETFEEIAFHGRSIEECEKLEQIGQKIASRCK 266 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~f~~~~~~~~~~l~~i~~~i~~~c~ 266 (713)
+-+++.|+|.+|+||||+++.+.++-.-.. .-...+|+.++.. .....+..+|+...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~i~~~l~ 63 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS--------------RTPRDFAQEILEALG 63 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH--------------SSHHHHHHHHHHHHT
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC--------------CCHHHHHHHHHHHhC
Confidence 356889999999999999999998522110 0234456654421 145566677766544
No 113
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.013 Score=55.67 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+.+|||-|-+|.||||+|+.+++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 578999999999999999999887
No 114
>PF13173 AAA_14: AAA domain
Probab=95.35 E-value=0.015 Score=51.28 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=26.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEec
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVS 235 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 235 (713)
-+++.|.|+.|+|||||++.++.+.. .....+++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~ 38 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFD 38 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccC
Confidence 35899999999999999999887422 22455555433
No 115
>PRK06762 hypothetical protein; Provisional
Probab=95.32 E-value=0.012 Score=54.62 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|+|+.|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 116
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.28 E-value=0.01 Score=62.93 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=39.1
Q ss_pred CCCcEEeccchHHHHHHHHhCCCCcc-------CCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 167 DEEEIYGRVGEKNELLSKLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 167 ~~~~~vG~~~~~~~l~~~L~~~~~~~-------~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...++.|+++.++++.+.+...-... -...+-+-++|++|+||||+|+++.+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999988775321100 112455889999999999999999883
No 117
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.24 E-value=0.012 Score=57.38 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=37.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.++-++++.=.+.... .+++.+--+-++|++|+||||||.-+.+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 468998877766655554322 12446778899999999999999999884
No 118
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.23 E-value=0.013 Score=56.61 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=41.9
Q ss_pred cCcCCccccCCcccccccCccccCCCCCcEEeccCc--cCccccchhhccCCccceeeccCcc
Q 043964 459 LIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHC--WYLKELPEGIGKLINMKHLLNERTD 519 (713)
Q Consensus 459 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~--~~l~~lp~~i~~L~~L~~L~l~~~~ 519 (713)
+..|++|++.++. +.++- .+..|++|++|+++.| .....++....++++|++|++++|.
T Consensus 42 ~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3456666666554 44333 2556889999999998 4445666667788999999999984
No 119
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.22 E-value=0.016 Score=56.91 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
....+|||.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999887
No 120
>PHA00729 NTP-binding motif containing protein
Probab=95.22 E-value=0.023 Score=54.61 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 179 NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++++.+.. .+...|.|.|.+|+||||||..+.+.
T Consensus 6 k~~~~~l~~------~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 6 KKIVSAYNN------NGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHhc------CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345555542 24567899999999999999999884
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.20 E-value=0.017 Score=60.72 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=36.4
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++..++.+.+++..+ ....+-++|..|+||||+|+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999988888642 3345679999999999999998773
No 122
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.14 E-value=0.033 Score=49.82 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=27.1
Q ss_pred EEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSE 236 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 236 (713)
++|+|+|..|+|||||++.+.+.- .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999952 223455555665554
No 123
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.13 E-value=0.014 Score=68.50 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=37.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++||+++.+++++.|.... ..-+-++|.+|+|||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998543 223359999999999999998774
No 124
>PRK04040 adenylate kinase; Provisional
Probab=95.13 E-value=0.015 Score=54.92 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999877
No 125
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.12 E-value=0.016 Score=52.17 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
||-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 126
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.10 E-value=0.0071 Score=34.63 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=6.8
Q ss_pred CcEEeccCccCccccchh
Q 043964 486 LEKLDISHCWYLKELPEG 503 (713)
Q Consensus 486 L~~L~l~~~~~l~~lp~~ 503 (713)
|++||+++|. +..+|++
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 3444444443 3344433
No 127
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.10 E-value=0.027 Score=56.80 Aligned_cols=25 Identities=40% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
....+|||.|..|+||||+|+.+-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988765
No 128
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.016 Score=63.55 Aligned_cols=61 Identities=28% Similarity=0.205 Sum_probs=43.8
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
++++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+.-...+.+...+|+|.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 468998888888888877432 3467799999999999999999874322233444555553
No 129
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.00 E-value=0.013 Score=56.19 Aligned_cols=21 Identities=48% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
||||.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 130
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.99 E-value=0.013 Score=33.61 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=14.5
Q ss_pred cCCccccCCcccccccCccccC
Q 043964 461 HLKYLNLSCLTSIRKLPEPLCE 482 (713)
Q Consensus 461 ~Lr~L~L~~~~~i~~lp~~i~~ 482 (713)
+|++|+|++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46777777776 6677766554
No 131
>PRK03839 putative kinase; Provisional
Probab=94.97 E-value=0.016 Score=54.61 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=20.0
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 132
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.96 E-value=0.014 Score=54.89 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
||+|.|.+|.||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 133
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.96 E-value=0.02 Score=65.44 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=32.4
Q ss_pred CcEEeccchHH---HHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKN---ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++++|.+.... .+.+++.. +....+-++|++|+||||||+.+++.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45788776553 35555542 24556679999999999999999873
No 134
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.94 E-value=0.011 Score=62.95 Aligned_cols=53 Identities=21% Similarity=0.147 Sum_probs=38.8
Q ss_pred CCCcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 167 DEEEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 167 ~~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+++.|+++.++++.+.+...-.. +-...+-|-++|.+|.|||++|+++.+.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 3456899999999998876431110 0123556889999999999999999883
No 135
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.93 E-value=0.013 Score=56.91 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|||.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 136
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.92 E-value=0.018 Score=54.68 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 137
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.89 E-value=0.017 Score=55.39 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=42.7
Q ss_pred cCCCCcEEeccchHHH---HHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchH
Q 043964 165 FIDEEEIYGRVGEKNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHE 220 (713)
Q Consensus 165 ~~~~~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~ 220 (713)
.+.-++++|.++.+.+ |++.|.....=++-..+-|-.+|++|.|||.+|+++.|..
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 3445679999876554 7777776543235578899999999999999999999953
No 138
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.87 E-value=0.02 Score=67.03 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=37.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++||+.+..++++.|.... ..-+-+||.+|+||||+|+.+.+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987543 223449999999999999998874
No 139
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.85 E-value=0.022 Score=57.66 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++++.+...- ...-.++.|+|++|+||||+++.+++.
T Consensus 28 ~~~~~~~l~~~~---~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 28 HKRAMAYLEYGL---SQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HHHHHHHHHHHH---hcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 445555554321 113458899999999999999999885
No 140
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.84 E-value=0.028 Score=56.46 Aligned_cols=50 Identities=22% Similarity=0.178 Sum_probs=32.3
Q ss_pred cEEeccchHHHHHH---HHhC------CCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 170 EIYGRVGEKNELLS---KLLC------ESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 170 ~~vG~~~~~~~l~~---~L~~------~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+++|.+..+++|.+ +... ..-.......-+-++|.+|.||||+|+.+.+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 47888776655543 3311 11000224556779999999999999999873
No 141
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.028 Score=59.38 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=37.6
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHH
Confidence 468999999999988887432 346788999999999999999877
No 142
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.79 E-value=0.027 Score=52.87 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=20.1
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998873
No 143
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.77 E-value=0.089 Score=51.79 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=59.5
Q ss_pred hhHHHHHHHHhccchHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHhhHhHHHH
Q 043964 4 AVVSPLLEQLISFSTEEVTQQVKLVKGVEQEVEKLTSHLQTIQAVLNDAEQR-QVKEKSIRVWLGRLKDVSYDIENVLDE 82 (713)
Q Consensus 4 ~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~Wl~~l~~~~~d~ed~ld~ 82 (713)
+.|..++++|-. ........+.-++.+++-++.+++.+|.||+...+. .......+....++...||++|.++|-
T Consensus 296 GyVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 296 GYVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred cHHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence 456666666666 444455556678999999999999999999987443 333334889999999999999999998
Q ss_pred HH
Q 043964 83 WI 84 (713)
Q Consensus 83 ~~ 84 (713)
+.
T Consensus 372 Ci 373 (402)
T PF12061_consen 372 CI 373 (402)
T ss_pred hh
Confidence 63
No 144
>PRK06893 DNA replication initiation factor; Validated
Probab=94.76 E-value=0.027 Score=55.32 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=28.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEec
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVS 235 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 235 (713)
.+.+.+||..|+|||+||+++.+. .......+.|+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 357899999999999999999995 33334455666553
No 145
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.71 E-value=0.026 Score=52.04 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999873
No 146
>PLN03025 replication factor C subunit; Provisional
Probab=94.67 E-value=0.027 Score=58.47 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=34.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.++.++.+.+++..+ ...-+-++|.+|+||||+|+.+.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889888777777766532 3334569999999999999998873
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.63 E-value=0.025 Score=65.60 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=36.9
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++++||+.+.+++++.|.... ..-+-++|.+|+||||+|+.+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999887543 223458999999999999999874
No 148
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.023 Score=53.28 Aligned_cols=24 Identities=50% Similarity=0.598 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 569999999999999999998873
No 149
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.61 E-value=0.032 Score=58.04 Aligned_cols=45 Identities=27% Similarity=0.240 Sum_probs=37.1
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+++.++.+..++..+ ....+-++|..|.||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999988888642 3445799999999999999999874
No 150
>PRK00625 shikimate kinase; Provisional
Probab=94.59 E-value=0.023 Score=52.88 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|-++||.|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999866
No 151
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.54 E-value=0.024 Score=50.10 Aligned_cols=21 Identities=43% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|-|+|..|.||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999984
No 152
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.48 E-value=0.038 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
||+|+|+.|+|||||++++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 153
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.46 E-value=0.026 Score=50.29 Aligned_cols=23 Identities=48% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+.|+|.+|+||||+|+.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 47899999999999999998873
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.45 E-value=0.029 Score=65.93 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=36.6
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++||+.+..++++.|.... ..-+-++|.+|+||||+|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999998543 223448999999999999988773
No 155
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.43 E-value=0.032 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3459999999999999999999884
No 156
>PRK10536 hypothetical protein; Provisional
Probab=94.43 E-value=0.15 Score=50.10 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=39.8
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCce
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKI 229 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~ 229 (713)
...+.++.......+.+|.. ..++.+.|..|.|||+||.+...+.-..+.|+..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kI 107 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRI 107 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEE
Confidence 34577888888888888863 2389999999999999999987753223334433
No 157
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.40 E-value=0.028 Score=52.97 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|.|+|+.|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999988
No 158
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.39 E-value=0.028 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+|.|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998763
No 159
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.038 Score=60.09 Aligned_cols=45 Identities=29% Similarity=0.329 Sum_probs=35.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++++|.+.....+.+.+..+. -.+.+-++|++|+||||+|+.+.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 469998877777777766321 236688999999999999999876
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.36 E-value=0.063 Score=52.92 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=26.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
...+-|+|+.|+|||+|++++++. ....-..+.++.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEH
Confidence 357889999999999999999984 3332234455544
No 161
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.35 E-value=0.025 Score=51.16 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
||.|+|..|.||||+|+.+-.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 162
>PRK05439 pantothenate kinase; Provisional
Probab=94.35 E-value=0.056 Score=54.98 Aligned_cols=26 Identities=42% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 193 QKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 193 ~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.....||||.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998876
No 163
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.35 E-value=0.069 Score=48.31 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=25.7
Q ss_pred EEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEE
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWV 232 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv 232 (713)
.||=|.|.+|.||||||+++.. +....-..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 5888999999999999999998 454443444444
No 164
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.28 E-value=0.03 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...|.++|++|.||||+|+.+.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999887
No 165
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.28 E-value=0.025 Score=48.03 Aligned_cols=21 Identities=48% Similarity=0.531 Sum_probs=18.7
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|-|+|.+|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998884
No 166
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.038 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.684 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+.+|+.|+|.+|+||||+.+.+-.
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999987765
No 167
>PRK06217 hypothetical protein; Validated
Probab=94.27 E-value=0.028 Score=53.13 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.|.|.|++|.||||+|+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998873
No 168
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.25 E-value=0.036 Score=62.78 Aligned_cols=51 Identities=24% Similarity=0.161 Sum_probs=40.4
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++.++||+++.++|...|...-.+ ...-.++-|+|++|.|||+.++.|.+.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrE 804 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQL 804 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999988653221 123467889999999999999999875
No 169
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.17 E-value=0.034 Score=53.76 Aligned_cols=26 Identities=46% Similarity=0.546 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhch
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+....|-++||+|.||||..|.++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45678889999999999999999984
No 170
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.15 E-value=0.055 Score=47.51 Aligned_cols=39 Identities=21% Similarity=0.058 Sum_probs=27.7
Q ss_pred hHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+..++-+.|...-. .-.+|.+.|.-|.||||++|.+.+.
T Consensus 7 ~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44455555543211 3458999999999999999998873
No 171
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.13 E-value=0.041 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|+|++|.||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999877
No 172
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.035 Score=50.19 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=18.4
Q ss_pred EEEEEecCCchhHHHHHHHh
Q 043964 198 IISIVGMGGIGKTTLAQLDC 217 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~ 217 (713)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998876
No 173
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.15 Score=53.63 Aligned_cols=50 Identities=30% Similarity=0.228 Sum_probs=38.9
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++.+.+|+++.+++...|..--. +....-+-|+|..|.|||+.++.|.+.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~ 65 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE 65 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH
Confidence 34489999999999988865332 112333889999999999999999994
No 174
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.08 E-value=0.029 Score=53.00 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.1
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999866
No 175
>CHL00181 cbbX CbbX; Provisional
Probab=94.07 E-value=0.085 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+-++|.+|.||||+|+.+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34778999999999999999873
No 176
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.047 Score=60.17 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=37.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999998887432 345677899999999999998876
No 177
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.039 Score=52.83 Aligned_cols=23 Identities=43% Similarity=0.557 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.++||+|..|.|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 178
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.96 E-value=0.025 Score=48.76 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=17.1
Q ss_pred EEEEecCCchhHHHHHHHhchHHHHhhC
Q 043964 199 ISIVGMGGIGKTTLAQLDCNHEEVIRKF 226 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~~~~~~~F 226 (713)
|-++|.+|+||||+|+.+.. .+...|
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f 27 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSF 27 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--E
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCce
Confidence 45899999999999999887 344445
No 179
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.96 E-value=0.036 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|+|+|..|+||||||+.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999887
No 180
>PRK13949 shikimate kinase; Provisional
Probab=93.96 E-value=0.036 Score=51.51 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-|.|+|+.|.||||+++.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999877
No 181
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.89 E-value=0.065 Score=58.56 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++..+|||.|..|.||||||+.+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHh
Confidence 3689999999999999999999876
No 182
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.87 E-value=0.065 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.++.|.|+.|+|||||+++++++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999985
No 183
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.85 E-value=0.051 Score=45.60 Aligned_cols=22 Identities=41% Similarity=0.306 Sum_probs=19.8
Q ss_pred eEEEEEEecCCchhHHHHHHHh
Q 043964 196 LHIISIVGMGGIGKTTLAQLDC 217 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~ 217 (713)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999975
No 184
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.84 E-value=0.046 Score=64.54 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=36.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++||+.+..++++.|.... ..-+-++|.+|+||||+|+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 359999999999999997543 223347999999999999988773
No 185
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.83 E-value=0.037 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+|.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999998773
No 186
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.80 E-value=0.044 Score=51.90 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|+|+.|.|||||++.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999976
No 187
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.80 E-value=0.047 Score=52.74 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=24.0
Q ss_pred CCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 193 QKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 193 ~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++++|+++|..|.|||||.+++...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999999998763
No 188
>PRK08727 hypothetical protein; Validated
Probab=93.77 E-value=0.083 Score=52.00 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=27.3
Q ss_pred EEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
..+.|+|..|+|||+|++++++. .........++++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence 45999999999999999999984 3344445566553
No 189
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.77 E-value=0.048 Score=50.44 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=32.7
Q ss_pred EEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 171 IYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 171 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++|....+.++++.+..-.. .+.+|+ |+|-.|.||+++|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~~pVl-I~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SDLPVL-ITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---STS-EE-EECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---CCCCEE-EEcCCCCcHHHHHHHHHHh
Confidence 46777788888887765442 235555 9999999999999999983
No 190
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.77 E-value=0.058 Score=55.06 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=43.9
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+++|.++..+++++.+...+...+..-+|+-.+|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999876544356779999999999999999998876
No 191
>PRK13947 shikimate kinase; Provisional
Probab=93.76 E-value=0.041 Score=51.28 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-|.|+||+|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 192
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.75 E-value=0.04 Score=49.15 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999887
No 193
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.73 E-value=0.043 Score=50.08 Aligned_cols=20 Identities=45% Similarity=0.700 Sum_probs=18.6
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|.++|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999876
No 194
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.70 E-value=0.045 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|-+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999876
No 195
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.68 E-value=0.048 Score=49.57 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+|++|+|+.|+|||||...+-..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 469999999999999999998773
No 196
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.66 E-value=0.073 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+-|+|..|+|||+||+++++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999984
No 197
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.62 E-value=0.078 Score=48.21 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=30.3
Q ss_pred chHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 176 GEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+..+++.+.|. + +++.++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 46888888886 3 68999999999999999998886
No 198
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.61 E-value=0.07 Score=50.44 Aligned_cols=42 Identities=31% Similarity=0.348 Sum_probs=30.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..+..+.-... +.+-|-++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 467888877766655554 235678999999999999998764
No 199
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.60 E-value=0.057 Score=48.16 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 48999999999999999998873
No 200
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.59 E-value=0.054 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+||+.|+.|+||||.|+..-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46999999999999999987544
No 201
>PRK13975 thymidylate kinase; Provisional
Probab=93.58 E-value=0.05 Score=52.01 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999887
No 202
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.57 E-value=0.067 Score=57.34 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=34.7
Q ss_pred cEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 170 EIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++|+++.++.+...+..+. -|-++|.+|+||||+|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 48999999988888887543 356899999999999999887
No 203
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.57 E-value=0.08 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++|+++|.+|+||||++.++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999998876
No 204
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.56 E-value=0.063 Score=59.35 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=37.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHH
Confidence 568999999999998886432 246778999999999999998766
No 205
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.56 E-value=0.063 Score=57.69 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=36.6
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..+..+..++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999888888888887432 235678999999999999999876
No 206
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.55 E-value=0.081 Score=49.15 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.|+|.+|+|||||++.+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999888764
No 207
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.55 E-value=0.059 Score=62.01 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=36.5
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++||+++++++++.|.... .. -+-++|.+|+|||++|+.+...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~-----~~-n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR-----KN-NPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC-----CC-CeEEECCCCCCHHHHHHHHHHH
Confidence 359999999999999998643 12 2247999999999999999873
No 208
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.53 E-value=0.048 Score=48.64 Aligned_cols=22 Identities=45% Similarity=0.687 Sum_probs=20.1
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+|.|-|.+|.||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 7899999999999999998874
No 209
>PRK05642 DNA replication initiation factor; Validated
Probab=93.52 E-value=0.14 Score=50.37 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=26.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
...+.|||..|+|||.|++++.+. ....=..++|++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeH
Confidence 357899999999999999999874 3322234566554
No 210
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.51 E-value=0.075 Score=59.06 Aligned_cols=45 Identities=29% Similarity=0.330 Sum_probs=37.5
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999987432 357888999999999999988765
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.51 E-value=0.12 Score=49.25 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=24.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
.+||.+||+.|+||||.+-++... .+..=..+..|+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecC
Confidence 369999999999999976666553 2222234555553
No 212
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=93.50 E-value=0.094 Score=48.57 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.2
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-|.|+|..|+|||||.+.+.+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLT 22 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999988754
No 213
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.48 E-value=0.072 Score=57.07 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=36.1
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHH
Confidence 468998888888888887422 245678999999999999998766
No 214
>PRK14530 adenylate kinase; Provisional
Probab=93.48 E-value=0.048 Score=53.02 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 215
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.46 E-value=0.053 Score=46.92 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=19.7
Q ss_pred EEEEecCCchhHHHHHHHhchH
Q 043964 199 ISIVGMGGIGKTTLAQLDCNHE 220 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~~ 220 (713)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999988754
No 216
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.41 E-value=0.048 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
||.|+|.+|.||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998773
No 217
>PRK13695 putative NTPase; Provisional
Probab=93.41 E-value=0.075 Score=49.69 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|+|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 218
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.35 E-value=0.083 Score=48.48 Aligned_cols=38 Identities=34% Similarity=0.421 Sum_probs=27.1
Q ss_pred EEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEeccc
Q 043964 198 IISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSET 237 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 237 (713)
++.|+|.+|.||||+++.+... ....-..++|+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcc
Confidence 4689999999999999999874 2223345666655433
No 219
>PRK13236 nitrogenase reductase; Reviewed
Probab=93.34 E-value=0.062 Score=55.02 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=22.4
Q ss_pred CCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 193 QKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 193 ~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
|++.+||.+.|-||+||||.|-.+.-
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHH
Confidence 45789999999999999998877655
No 220
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.30 E-value=0.052 Score=58.22 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=36.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++.|.+..++++.+.+...-.. +-....-+-++|.+|.|||++|++|.+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46889998888888876421100 0123455779999999999999999983
No 221
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=93.27 E-value=0.088 Score=52.38 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=29.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCC-ceeEEEecc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFD-KILWVCVSE 236 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~-~~~wv~vs~ 236 (713)
-.-++|+|-.|.||||||+.+++ .++.+|+ .++++-+.+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGe 108 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGE 108 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEecc
Confidence 34689999999999999999999 4666675 445554544
No 222
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.27 E-value=0.082 Score=51.51 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=29.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEE
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVC 233 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~ 233 (713)
.-.+.|+|..|.|||||++.+.. ...+.|+++.+++
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence 33678999999999999999887 4777897776664
No 223
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.26 E-value=0.071 Score=51.38 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+.|.|+|..|+|||||++.+.+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 568899999999999999999876
No 224
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.25 E-value=0.047 Score=50.41 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=18.0
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|.|+|+.|+||||+|+.+-+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999876
No 225
>PRK12377 putative replication protein; Provisional
Probab=93.24 E-value=0.075 Score=52.47 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=30.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSE 236 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 236 (713)
...+.++|..|+|||+||.++.+. +....-.++++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVPD 139 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHHH
Confidence 357899999999999999999994 444444567776653
No 226
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.20 E-value=0.054 Score=56.20 Aligned_cols=24 Identities=46% Similarity=0.721 Sum_probs=20.5
Q ss_pred CeEEEEEEecCCchhHH-HHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTT-LAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTT-La~~v~~ 218 (713)
+-+||.+||+.|+|||| |||....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999987 8877655
No 227
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.19 E-value=0.13 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 193 QKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 193 ~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+..+|.|.|..|.|||||+..+.+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999999887
No 228
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.18 E-value=0.1 Score=47.96 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.|+|.+|+|||||++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998764
No 229
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.18 E-value=0.062 Score=53.94 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=26.6
Q ss_pred EEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
++|+|+|.+|+|||||+..+.. ..+..- .++-|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC-CEEEEEE
Confidence 5899999999999999999988 455444 3444433
No 230
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.16 E-value=0.071 Score=50.73 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+|.|.|.+|+||||+|+.+.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998873
No 231
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.13 E-value=0.059 Score=50.32 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.|-|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999884
No 232
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.12 E-value=0.062 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...|.|+|+.|.||||+|+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999999876
No 233
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.12 E-value=0.11 Score=49.43 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=36.0
Q ss_pred EeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEE
Q 043964 172 YGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVC 233 (713)
Q Consensus 172 vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~ 233 (713)
..+..+....++.|. +..++.+.|++|.|||.||-+..-+.-..+.|+..+++.
T Consensus 3 ~p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 3 KPKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp ---SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred cCCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 345566777888887 245899999999999999988776544457788887764
No 234
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.10 E-value=0.056 Score=54.88 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+.|+|+|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4799999999999999887765
No 235
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.08 E-value=0.13 Score=49.78 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=31.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSE 236 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 236 (713)
.-+++-|+|.+|.||||++..+... ....-+.++|++...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC
Confidence 4579999999999999999887763 334457888887643
No 236
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.05 E-value=0.068 Score=47.82 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=18.2
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|-++|..|+|||+||+.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887
No 237
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.086 Score=60.53 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=37.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.+..++.+.+++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 569999999998998887432 2456689999999999999988763
No 238
>PLN02348 phosphoribulokinase
Probab=93.03 E-value=0.075 Score=55.38 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+...+|||.|.+|.||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999887
No 239
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.02 E-value=0.076 Score=45.75 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 240
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=92.99 E-value=0.11 Score=46.71 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=50.2
Q ss_pred EEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe---------------------cccccc-------------ccc
Q 043964 198 IISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV---------------------SETFEE-------------IAF 243 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v---------------------s~~~~~-------------~~f 243 (713)
-+-|+|-||+||+++.|.-|.. -..+-+...+||.. +++||. -+|
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVF 100 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVF 100 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEE
Confidence 3468999999999999987752 11122334566542 122332 346
Q ss_pred cCCCchhchHHHHHHHHHHHhcCCCCchhH
Q 043964 244 HGRSIEECEKLEQIGQKIASRCKGLPLAAK 273 (713)
Q Consensus 244 ~~~~~~~~~~l~~i~~~i~~~c~GlPlai~ 273 (713)
...+..+-....+.-++|.+.|+..|+.++
T Consensus 101 STTDr~SFea~~~w~~kv~~e~~~IPtV~v 130 (246)
T KOG4252|consen 101 STTDRYSFEATLEWYNKVQKETERIPTVFV 130 (246)
T ss_pred ecccHHHHHHHHHHHHHHHHHhccCCeEEe
Confidence 655555556677888999999999998766
No 241
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.98 E-value=0.078 Score=48.49 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|+|+|..|+|||||++.+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 242
>PRK08356 hypothetical protein; Provisional
Probab=92.97 E-value=0.084 Score=50.41 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.3
Q ss_pred eEEEEEEecCCchhHHHHHHH
Q 043964 196 LHIISIVGMGGIGKTTLAQLD 216 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v 216 (713)
..+|+|+|++|+||||+|+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 357999999999999999998
No 243
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.95 E-value=0.14 Score=51.59 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++|.++|.+|+||||.+.++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 568999999999999998888775
No 244
>PLN02796 D-glycerate 3-kinase
Probab=92.94 E-value=0.078 Score=54.39 Aligned_cols=24 Identities=33% Similarity=0.238 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..-+|||.|..|.|||||++.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 568999999999999999999887
No 245
>PRK06620 hypothetical protein; Validated
Probab=92.92 E-value=0.069 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+-|||..|+|||+|++++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999987764
No 246
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.91 E-value=0.071 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.||||+++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999987
No 247
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.91 E-value=0.098 Score=58.70 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=41.3
Q ss_pred CCCCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 166 IDEEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 166 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...++++|.+..++++..++...... ....+++.++|..|.||||+++.+...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33457999999999999998754321 123468999999999999999999874
No 248
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.90 E-value=0.067 Score=52.12 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-|.|+|++|+|||||+.....+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56889999999999999998875
No 249
>PRK13946 shikimate kinase; Provisional
Probab=92.89 E-value=0.066 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+.|.++||.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999887
No 250
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=92.85 E-value=0.13 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887653
No 251
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.85 E-value=0.079 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.|+.|+|+.|.|||||.+.+..-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 459999999999999999998764
No 252
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.83 E-value=0.089 Score=49.76 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=32.6
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++||-++.++.+.-.-. +++..-+-|-||+|+||||-+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 469998887766654444 34677788999999999997666554
No 253
>PRK04182 cytidylate kinase; Provisional
Probab=92.81 E-value=0.074 Score=49.96 Aligned_cols=21 Identities=52% Similarity=0.664 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|.|.|+.|.||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 254
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.79 E-value=0.098 Score=57.60 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=37.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++||.+.-++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHH
Confidence 569999999999999997432 245678999999999999988766
No 255
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.77 E-value=0.12 Score=56.28 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=37.4
Q ss_pred CCcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.++.|.+..++++.+.+...-.. +-...+-|-++|++|.|||++|+++++.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 356888999988888876421100 0113455889999999999999999984
No 256
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.76 E-value=0.22 Score=48.40 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=29.9
Q ss_pred EEecc-chHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 171 IYGRV-GEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 171 ~vG~~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++|-. +..-...+.+...+. .....+-|||..|+|||.|.+++++.
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANE 57 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 45642 333445555554432 23445789999999999999999994
No 257
>COG3899 Predicted ATPase [General function prediction only]
Probab=92.76 E-value=0.1 Score=61.20 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=42.0
Q ss_pred cEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhh
Q 043964 170 EIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRK 225 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~ 225 (713)
+++||+.+.+.+...+..-.. ..-.|+.+.|..|||||+|++.|.. .+.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence 368999999999998876543 3567999999999999999999998 45544
No 258
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.73 E-value=0.11 Score=53.82 Aligned_cols=45 Identities=31% Similarity=0.332 Sum_probs=37.4
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++++.+++..+. -.+.+-++|+.|+||||+|+.++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~ 48 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIAL 48 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHH
Confidence 468898888999999987432 356788999999999999998876
No 259
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.73 E-value=0.072 Score=51.65 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=19.0
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998877665
No 260
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.72 E-value=0.15 Score=43.98 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=36.5
Q ss_pred CcEEeccchHHHHHHHHhCCCC-ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESS-EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++|..-..+.|++.+..--. ...+..-|++..|..|.|||.+|+.+.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3578877777777776643111 11456789999999999999988887663
No 261
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=92.70 E-value=0.14 Score=48.97 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=19.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..-|.|+|.+|+|||||+..+.+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~ 28 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFAD 28 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999988765
No 262
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.70 E-value=0.097 Score=58.06 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=37.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++||.+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999987532 346778999999999999988765
No 263
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.69 E-value=0.075 Score=49.17 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|-|.|..|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 678999999999999999984
No 264
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.69 E-value=0.077 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|+++|.+|+|||||++.+.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 265
>PRK13948 shikimate kinase; Provisional
Probab=92.67 E-value=0.089 Score=49.35 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+.|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999876
No 266
>PRK14974 cell division protein FtsY; Provisional
Probab=92.67 E-value=0.15 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.++|+.|+||||++.++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998887775
No 267
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.66 E-value=0.12 Score=54.75 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=37.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -.+.+-++|..|+||||+|+.+..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887432 345778999999999999988876
No 268
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=92.66 E-value=0.14 Score=50.01 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=19.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..--|.|+|.+|+|||||+.....
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~ 35 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhh
Confidence 344678999999999999987543
No 269
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.64 E-value=0.09 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...-|+|+|..|+|||||++.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3456999999999999999999874
No 270
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.64 E-value=0.075 Score=28.17 Aligned_cols=16 Identities=50% Similarity=0.744 Sum_probs=6.3
Q ss_pred CCcEEeccCccCccccc
Q 043964 485 NLEKLDISHCWYLKELP 501 (713)
Q Consensus 485 ~L~~L~l~~~~~l~~lp 501 (713)
+|++|++++|+ +.++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555555 44443
No 271
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.63 E-value=0.084 Score=49.11 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|.|.|+.|+||||+|+.+-+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999865
No 272
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.62 E-value=0.076 Score=53.80 Aligned_cols=22 Identities=45% Similarity=0.563 Sum_probs=19.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|+|+|-||+||||+|-.+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999999887765
No 273
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.62 E-value=0.063 Score=52.82 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=20.9
Q ss_pred EEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 201 IVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 201 I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
|+||+|+||||+++.+.+. ...+-...+-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhccCCceEEEc
Confidence 6899999999999999884 3333334444543
No 274
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.61 E-value=0.11 Score=58.25 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=37.6
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHH
Confidence 579999999999999988532 346788999999999999988765
No 275
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.59 E-value=0.071 Score=50.13 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=18.9
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998765
No 276
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.58 E-value=0.075 Score=48.08 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+|++.|.+|+||||+++.+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988763
No 277
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.57 E-value=0.091 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+|+|+|.+|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888764
No 278
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.55 E-value=0.086 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|+.|+|||||.|.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999987
No 279
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.50 E-value=0.091 Score=46.57 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.|-++|..|.|||||+|++-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 35778999999999999999874
No 280
>PRK09087 hypothetical protein; Validated
Probab=92.50 E-value=0.087 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-+.+.|||..|+|||||++...+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999988763
No 281
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.50 E-value=0.12 Score=53.48 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=34.1
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+||.+..+..++-.+... ...-+.|.|..|.|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899888887776666632 233466999999999999999876
No 282
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.49 E-value=0.081 Score=56.26 Aligned_cols=52 Identities=23% Similarity=0.159 Sum_probs=37.4
Q ss_pred CCcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.++.|.+..+++|.+.+...-.. +-...+-|-++|.+|.||||+|+++.+.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 456899988888887766421100 0123567889999999999999999883
No 283
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.47 E-value=0.082 Score=43.56 Aligned_cols=22 Identities=45% Similarity=0.668 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999988873
No 284
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.45 E-value=0.009 Score=56.25 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=37.4
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCcc
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCW 495 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~ 495 (713)
|+.+..|..||++.+. +..+|.+++.+..++.+++..|. ...+|.+.+.+++++++++.++.
T Consensus 61 ~s~~t~~~rl~~sknq------~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQ------IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hHHHHHHHHHhccHhh------HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccCc
Confidence 4444555556666555 55666666666666666665555 56666666666666666666554
No 285
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=92.45 E-value=0.23 Score=48.55 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=30.1
Q ss_pred EEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecccccc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSETFEE 240 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 240 (713)
+.|+|+|-|||||+|.++.+-- .....-..++-|-.+.+-|.
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa--ala~~G~kVl~iGCDPK~DS 42 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA--ALAEMGKKVLQIGCDPKADS 42 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESSSSTS
T ss_pred CeEEEEcCCCcccChhhhHHHH--HHHhccceeeEecccCCCcc
Confidence 4699999999999999998876 34444456777766655544
No 286
>PRK13768 GTPase; Provisional
Probab=92.45 E-value=0.093 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++.|+|.||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 35889999999999999988776
No 287
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=92.44 E-value=0.14 Score=54.19 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=24.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhhC
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRKF 226 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F 226 (713)
..-||+|+|..|.|||||+..+.. +.+..+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~--~l~~~~ 33 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVR--RLSERF 33 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH--HHhhCc
Confidence 356999999999999999999998 455443
No 288
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.44 E-value=0.095 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999886
No 289
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=1.8 Score=49.45 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=39.4
Q ss_pred CcEEeccchHHHHHHHHhCCC---CccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCES---SEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++|.+..++.|.+.+.... .+....+.+.-.+|+.|||||-||+++..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 358999999999888886432 12244567888899999999999999876
No 290
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.41 E-value=0.092 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 291
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.41 E-value=0.12 Score=57.81 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=36.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+++||.+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468998888888888887532 346788999999999999998744
No 292
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.41 E-value=0.086 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|+|+|-||+||||+|-.+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999998877665
No 293
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.41 E-value=0.093 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 294
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.40 E-value=0.095 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+|+|+|..|+|||||.+.|.-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999876
No 295
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.35 E-value=0.098 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999998853
No 296
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.35 E-value=0.1 Score=48.76 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45999999999999999999876
No 297
>PRK06761 hypothetical protein; Provisional
Probab=92.32 E-value=0.093 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++|.|.|++|+||||+|+.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999984
No 298
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=92.31 E-value=0.098 Score=49.98 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|+|+||.|+||+|.|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999998743
No 299
>PRK14527 adenylate kinase; Provisional
Probab=92.30 E-value=0.099 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|+|.+|.||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 300
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.30 E-value=0.093 Score=50.18 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.4
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 301
>PRK01184 hypothetical protein; Provisional
Probab=92.29 E-value=0.097 Score=49.45 Aligned_cols=18 Identities=44% Similarity=0.792 Sum_probs=16.7
Q ss_pred EEEEEEecCCchhHHHHH
Q 043964 197 HIISIVGMGGIGKTTLAQ 214 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~ 214 (713)
.+|+|+|+.|.||||+|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 489999999999999987
No 302
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.29 E-value=0.12 Score=56.04 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=35.4
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++||.+..++.+.+.+..+. -.+-+-++|+.|+||||+|+.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHH
Confidence 568998888888877776432 245788999999999999988754
No 303
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.28 E-value=0.093 Score=48.90 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|+|+.|.||||+|+.+-+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999876
No 304
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.28 E-value=0.13 Score=57.86 Aligned_cols=46 Identities=28% Similarity=0.291 Sum_probs=37.1
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++||.+..++.+.+.+..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 569999998888888887432 2456789999999999999988763
No 305
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.28 E-value=0.15 Score=52.06 Aligned_cols=64 Identities=27% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEeccccc
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSETFE 239 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 239 (713)
++.+.+|+...+.+..++...+ ..-.+.|-|+|-.|.|||.+.+.+++... ...+|+++-..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft 68 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFT 68 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhcc
Confidence 4568899999999999887654 22356668999999999999999998542 2568998877764
No 306
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.28 E-value=0.11 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...||+++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999988763
No 307
>PLN02200 adenylate kinase family protein
Probab=92.27 E-value=0.11 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|.|++|+||||+|+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998765
No 308
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.26 E-value=0.16 Score=52.29 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++++.+... .....+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34555555422 23678999999999999999998776
No 309
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.26 E-value=0.1 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.++|+||-.|.||||+++.+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc
Confidence 345899999999999999999887
No 310
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.25 E-value=0.11 Score=46.85 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|+||||-.|.|||||.+.+-.
T Consensus 33 eVLgiVGESGSGKtTLL~~is~ 54 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISG 54 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhc
Confidence 5999999999999999988765
No 311
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.23 E-value=0.1 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+...
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998873
No 312
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=0.016 Score=53.71 Aligned_cols=66 Identities=17% Similarity=0.348 Sum_probs=36.3
Q ss_pred cCcccceeeccccccccccccccccccccccccccccccccccccccCCCCC-CCCCCCCCccEEEEEcCCchh
Q 043964 617 AFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALP-DHFHQTTTLKELIIRSNCGLL 689 (713)
Q Consensus 617 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~i~~~C~~l 689 (713)
.+++++.|.+.+|..+.+|...-- .+..|+|+.|+|++|+.+++-- ..+..+++|+.|.|. +-|..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l------~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~-~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERL------GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY-DLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHh------cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc-Cchhh
Confidence 455566666666666666554322 1255666666666666665331 123455666666666 55543
No 313
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.20 E-value=0.18 Score=50.58 Aligned_cols=42 Identities=29% Similarity=0.280 Sum_probs=34.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecccc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSETF 238 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~ 238 (713)
.-+++.|+|.+|.|||++|.+.-. +.....+.++||+..+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 568999999999999999977655 345558999999887643
No 314
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.19 E-value=0.1 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 315
>PRK08116 hypothetical protein; Validated
Probab=92.19 E-value=0.12 Score=51.92 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=28.0
Q ss_pred EEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSE 236 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 236 (713)
.-+-+||..|+|||.||.++++. +..+--.++++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNFPQ 152 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHH
Confidence 35789999999999999999995 433334456665443
No 316
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.15 E-value=0.13 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+|-|+|+.|+|||||++.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999773
No 317
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.15 E-value=0.1 Score=54.02 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=35.6
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-..+||.++.+..++..+... .+.-|-|.|..|.||||+|+.+++-
T Consensus 16 f~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 356999988877777666632 3444559999999999999999874
No 318
>PRK09183 transposase/IS protein; Provisional
Probab=92.14 E-value=0.21 Score=49.92 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+.|+|..|+|||+||.++.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999774
No 319
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.13 E-value=0.1 Score=48.17 Aligned_cols=20 Identities=40% Similarity=0.385 Sum_probs=16.8
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|+|.|-.|.|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999886
No 320
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.12 E-value=0.11 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
. .+++|+|..|.|||||++.+..
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhC
Confidence 5 8999999999999999999886
No 321
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.12 Score=52.27 Aligned_cols=54 Identities=22% Similarity=0.173 Sum_probs=38.8
Q ss_pred CCCCcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 166 IDEEEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 166 ~~~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+..++-|.++..++|.+.....-.+ +-+..+=|-.+|++|.|||-|||+|.|.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 33456788888888887766443211 0234566778999999999999999994
No 322
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.10 E-value=0.1 Score=52.85 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|+|.|-||+||||++-.+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 5788999999999999988766
No 323
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.10 E-value=0.1 Score=49.19 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++|-|+|+.|+|||||++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36888999999999999999887
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.05 E-value=0.31 Score=47.55 Aligned_cols=39 Identities=36% Similarity=0.476 Sum_probs=28.5
Q ss_pred hHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...++++.+.... .+..+|||.|.+|+||+||.-.+-..
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4566777776432 35789999999999999999887763
No 325
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.04 E-value=0.17 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhch
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
....+|+|.|.+|+|||||+..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999988774
No 326
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.00 E-value=0.15 Score=53.57 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=36.4
Q ss_pred CcEEeccchHHHHHHHHhCC-------CC-ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCE-------SS-EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++|.++.++.+.-.+... +. ...-..+-|-++|++|+||||+|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899998888887666532 00 00112367889999999999999999873
No 327
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.99 E-value=0.09 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|||.|..|.||||+++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 328
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.98 E-value=0.15 Score=56.63 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=36.5
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -.+.+-++|..|+||||+|+.+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999998888888887432 245677999999999999998765
No 329
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.98 E-value=0.17 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-++|.++|++|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999998877755
No 330
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=91.97 E-value=0.13 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.152 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..-+|||.|..|.|||||++.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999854
No 331
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.97 E-value=0.16 Score=53.95 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=37.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+...+.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887432 346888999999999999998865
No 332
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.97 E-value=0.099 Score=55.62 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-++.|+|+|..|.||||||+++.+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999998876
No 333
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.95 E-value=0.22 Score=49.41 Aligned_cols=38 Identities=34% Similarity=0.474 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+++..+.... .+..||||.|.||+||+||.-.+-..
T Consensus 37 a~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 37 ARELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred HHHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHH
Confidence 456777776543 36889999999999999999877663
No 334
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=91.95 E-value=0.19 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.|+|.+|+|||||+..+.+.
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988764
No 335
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.92 E-value=0.14 Score=57.80 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=36.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+++||.+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 569999999999999987432 245666999999999999987665
No 336
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.90 E-value=0.14 Score=56.09 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=36.6
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.+..+..+.+.+..+. -.+-+-++|..|+||||+|+.+.+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 468999888888887776422 2457789999999999999998873
No 337
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.88 E-value=0.15 Score=57.27 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=35.9
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHH
Confidence 468998888888888886422 345688999999999999987665
No 338
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.12 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999886
No 339
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.84 E-value=0.18 Score=48.19 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|.|+|..|.||||+++.+..
T Consensus 3 lilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998776
No 340
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.84 E-value=0.11 Score=52.59 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|+|+|-||+||||+|-.+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999999987665
No 341
>PRK15453 phosphoribulokinase; Provisional
Probab=91.84 E-value=0.13 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|.|-+|.||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 342
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.81 E-value=0.16 Score=56.63 Aligned_cols=45 Identities=27% Similarity=0.231 Sum_probs=37.1
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 569999998899999887432 346678999999999999988775
No 343
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.80 E-value=0.12 Score=51.08 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.0
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 344
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.12 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 345
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.78 E-value=0.22 Score=47.17 Aligned_cols=35 Identities=29% Similarity=0.133 Sum_probs=26.1
Q ss_pred hHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+..+.++.... .-.++.|+|..|.||||+++.+..
T Consensus 13 ~~~~~l~~~v~-------~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLAVE-------ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHh-------CCCEEEEECCCCCCHHHHHHHHHh
Confidence 34445554443 245899999999999999998876
No 346
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.76 E-value=0.12 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999999999874
No 347
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.74 E-value=0.12 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999873
No 348
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.73 E-value=0.12 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 349
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.73 E-value=0.12 Score=50.09 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999887
No 350
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.71 E-value=0.12 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999998763
No 351
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.68 E-value=0.13 Score=49.45 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|+.|+|||||...+.-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999988875
No 352
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=91.67 E-value=0.21 Score=45.76 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.4
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.|+|.+|+|||||...+...
T Consensus 3 i~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999887653
No 353
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.64 E-value=0.38 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...||.++|..|+||||.+.++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999888776
No 354
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.63 E-value=0.13 Score=49.02 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+|+|+|..|.|||||.+.+..
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 45999999999999999999876
No 355
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.60 E-value=0.24 Score=48.75 Aligned_cols=39 Identities=26% Similarity=0.441 Sum_probs=28.3
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSE 236 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 236 (713)
...+-++|.+|+|||+||.++.+. ....-..++++++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~~~ 137 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITVAD 137 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEHHH
Confidence 457889999999999999999995 333333556665543
No 356
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.58 E-value=0.2 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.++.++|+.|+||||++.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998874
No 357
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.57 E-value=0.13 Score=44.25 Aligned_cols=21 Identities=52% Similarity=0.778 Sum_probs=19.1
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.+.|.||+||||++..+...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998873
No 358
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.57 E-value=0.13 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999886
No 359
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=91.55 E-value=0.18 Score=49.09 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=17.9
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.|+|-+|+|||+|+.....+
T Consensus 4 IvvvGd~~vGKTsLi~~~~~~ 24 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKD 24 (222)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999876653
No 360
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.55 E-value=0.13 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999886
No 361
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.54 E-value=0.14 Score=47.82 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++.++|++|.||||+++.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999998873
No 362
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.53 E-value=0.12 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=18.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|-+.|-||+||||+|-+..-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 5788999999999999966544
No 363
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.53 E-value=0.13 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35999999999999999999987
No 364
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=91.52 E-value=0.22 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=19.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..-|.|+|-+|+|||||++...++
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~ 29 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDG 29 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345669999999999999887663
No 365
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.51 E-value=0.13 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|+.|.|||||.|.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999999987
No 366
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.51 E-value=0.12 Score=50.00 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+++|+|..|.|||||++.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 367
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.50 E-value=0.12 Score=52.32 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=18.9
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|+|+|-||+||||++-.+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999998876655
No 368
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.50 E-value=0.13 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999986
No 369
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.48 E-value=0.14 Score=52.54 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=25.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
.++|-+.|.||+||||+|-+..- .........+-|.+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvSt 38 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVST 38 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEe
Confidence 47899999999999999987333 23334444555443
No 370
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.48 E-value=0.14 Score=49.41 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 371
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.47 E-value=0.23 Score=52.00 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=37.9
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...++|.+.....+...+..+. -...+-|+|..|+||||+|+.+.+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHH
Confidence 4569999999999999887532 356788999999999999988766
No 372
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.45 E-value=0.11 Score=51.81 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|-++|++|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999998863
No 373
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.45 E-value=0.25 Score=48.40 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=30.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEec
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVS 235 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 235 (713)
.-.++-|+|.+|.||||+|..+... ....-..++|++.-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC
Confidence 4579999999999999999888764 33345678887654
No 374
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.44 E-value=0.26 Score=48.00 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
.-.++-|.|.+|+||||+|..+... ....=..++|+..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~ 55 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDT 55 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEC
Confidence 4579999999999999999888763 3233345667654
No 375
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.43 E-value=0.14 Score=50.79 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 376
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.43 E-value=0.16 Score=47.94 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+|.|.|.+|.||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998873
No 377
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=91.41 E-value=0.24 Score=45.51 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.9
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-|.++|.+|+|||||.....+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 378999999999999977654
No 378
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.40 E-value=0.14 Score=49.63 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999873
No 379
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=91.40 E-value=0.13 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|+|+|-||+||||+|-.+..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~ 22 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSH 22 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999988776
No 380
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=91.39 E-value=0.14 Score=51.55 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++|+|.|-||+||||++..+..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~ 24 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAA 24 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999988766
No 381
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=91.36 E-value=0.16 Score=46.58 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+|+++|..|+||||++..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998763
No 382
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.36 E-value=0.14 Score=50.83 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 383
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.35 E-value=0.13 Score=50.27 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=18.5
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|.|.|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999998865
No 384
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=2.5 Score=40.67 Aligned_cols=52 Identities=25% Similarity=0.204 Sum_probs=36.6
Q ss_pred CCcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++-|.+-.+.+|.+.....-.. +-+..+=+-.+|++|.|||.|||+|.|+
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345777777777777665432110 0234566778999999999999999995
No 385
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.35 E-value=0.14 Score=49.63 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999873
No 386
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.35 E-value=0.3 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|+|+|.+|+||||++.++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988776
No 387
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.34 E-value=0.14 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35999999999999999999986
No 388
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.34 E-value=0.21 Score=52.57 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=36.4
Q ss_pred CcEEeccchHHHHHHHHhCC--------CCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++|.+..++.+..++... .........-|-++|+.|+||||+|+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999988888877531 000011236789999999999999999876
No 389
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.33 E-value=0.18 Score=56.55 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=37.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -..-+-++|+.|+||||+|+.+.+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999887532 345678899999999999998866
No 390
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.32 E-value=0.13 Score=49.03 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=18.4
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|.|.|++|+||||+|+.+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998876
No 391
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.31 E-value=0.15 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 392
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=91.30 E-value=0.14 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988753
No 393
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=91.29 E-value=0.14 Score=47.21 Aligned_cols=21 Identities=24% Similarity=0.571 Sum_probs=18.9
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.++|.+|+|||||+..+.++
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988764
No 394
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.29 E-value=0.15 Score=49.87 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999863
No 395
>PRK06526 transposase; Provisional
Probab=91.28 E-value=0.11 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.-+-++|.+|+|||+||.++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345799999999999999999874
No 396
>PRK07429 phosphoribulokinase; Provisional
Probab=91.27 E-value=0.17 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...-+|||.|..|.||||+++.+..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999999886
No 397
>PRK00698 tmk thymidylate kinase; Validated
Probab=91.26 E-value=0.15 Score=49.07 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 398
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.24 E-value=0.15 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 399
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=91.23 E-value=0.14 Score=46.43 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998775
No 400
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.22 E-value=0.2 Score=55.04 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
..+++--.+-+++|.+||...-.+ ....+++-+.|++|+||||.++.+.++ . .|+.+-|.+-
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~e--l--g~~v~Ew~np 79 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKE--L--GFEVQEWINP 79 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHH--h--CCeeEEecCC
Confidence 345555566788899999753321 224579999999999999999999884 2 4788889753
No 401
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=91.21 E-value=0.15 Score=48.96 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchH
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHE 220 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~ 220 (713)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 56789999999999999999988853
No 402
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.20 E-value=0.16 Score=49.69 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999876
No 403
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=91.19 E-value=0.15 Score=46.63 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=18.7
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.|+|..|+|||||++.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988654
No 404
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.18 E-value=0.16 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhch
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.....++|||++|.|||.+|++|++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999994
No 405
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=91.16 E-value=0.15 Score=50.09 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+..-
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 406
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.12 E-value=0.28 Score=57.82 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=38.4
Q ss_pred CcEEeccchHHHHHHHHhCCC---CccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCES---SEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++|.+..++.+.+.+.... .+.+....++-++|..|+||||+|+.+.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 458999999999888886421 11122345788999999999999999986
No 407
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=91.12 E-value=0.15 Score=46.78 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998764
No 408
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=91.11 E-value=0.16 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999873
No 409
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.11 E-value=0.15 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||.+.+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999863
No 410
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=91.11 E-value=0.15 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+++|+|..|.|||||+++++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999873
No 411
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=91.11 E-value=0.15 Score=46.11 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|+++|..|+|||||+..+...
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988775
No 412
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=91.09 E-value=0.15 Score=51.56 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.1
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|+|.|-||+||||++-.+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 688999999999998877655
No 413
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.08 E-value=0.16 Score=49.29 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999874
No 414
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.06 E-value=0.16 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 415
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.05 E-value=0.16 Score=50.10 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 416
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=91.05 E-value=0.15 Score=46.23 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.++|..|+|||||+..+.+.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998775
No 417
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=91.01 E-value=0.15 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|+|.|..|.|||||++.+.+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 418
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.00 E-value=0.16 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998873
No 419
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=91.00 E-value=0.16 Score=46.45 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|+|+|.+|+|||||++.+.+.
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 689999999999999999875
No 420
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.98 E-value=0.16 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 421
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=90.98 E-value=0.16 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.|..|.|||||++.+...
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 422
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=90.97 E-value=0.16 Score=49.24 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|+|.|+.|.||||+|+.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAE 24 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 423
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.97 E-value=0.14 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
||+|.|-.|.||||+|+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998776
No 424
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=90.96 E-value=0.31 Score=45.91 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=18.6
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.++|-+|+|||+|+......
T Consensus 7 KivvvGd~~vGKTsli~~~~~~ 28 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKD 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999886553
No 425
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.95 E-value=0.22 Score=52.83 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=37.4
Q ss_pred CcEEeccchHHHHHHHHhCCCCc----cCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSE----QQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++++|.+..++.+.+++..+... ...-.+-+-++|+.|+||||+|+.+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999998754210 000245678999999999999998765
No 426
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=90.93 E-value=0.14 Score=48.88 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+|.|-|+-|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998873
No 427
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.92 E-value=0.18 Score=45.46 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999998874
No 428
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.91 E-value=0.17 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35999999999999999999986
No 429
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=90.90 E-value=0.16 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...|+|+|.+|+|||||++.+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345599999999999999998764
No 430
>PRK08181 transposase; Validated
Probab=90.90 E-value=0.19 Score=50.29 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=27.2
Q ss_pred EEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEec
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVS 235 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 235 (713)
.-+-++|..|+|||.||.++.+. .....-.+.|++++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~~ 143 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRTT 143 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeHH
Confidence 34899999999999999999884 33334455665543
No 431
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.89 E-value=0.34 Score=45.45 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=18.6
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.++|.+|+|||+|++...++
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~ 24 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKD 24 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999887653
No 432
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=90.88 E-value=0.16 Score=46.79 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 433
>PRK06921 hypothetical protein; Provisional
Probab=90.87 E-value=0.18 Score=50.66 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=28.2
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhh-CCceeEEEec
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRK-FDKILWVCVS 235 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~-F~~~~wv~vs 235 (713)
..-+.++|..|+|||+||.++.+. +... -..+++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV 155 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH
Confidence 457899999999999999999984 4333 3345666543
No 434
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=90.87 E-value=0.16 Score=50.11 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 35899999999999999999986
No 435
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=90.87 E-value=0.24 Score=55.08 Aligned_cols=45 Identities=29% Similarity=0.327 Sum_probs=35.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++++|.+..++.+...+.... .. -|-|+|..|+||||+|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~-----~~-~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN-----PQ-HVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC-----Cc-eEEEECCCCCCHHHHHHHHHHH
Confidence 469999988888888765321 23 3468999999999999999874
No 436
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=90.84 E-value=0.16 Score=44.66 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=26.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEeccc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSET 237 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~ 237 (713)
..-|-|.|-+|.||||+++.+..- | ..-|+++|+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~------~-~~~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK------T-GLEYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH------h-CCceEehhhH
Confidence 456789999999999999988752 2 2346777754
No 437
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=90.83 E-value=0.17 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 438
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=90.82 E-value=0.16 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++||||-.|.||||||+.+..
T Consensus 318 E~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 439
>PRK14532 adenylate kinase; Provisional
Probab=90.82 E-value=0.16 Score=48.17 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=18.0
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|-|.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999865
No 440
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.81 E-value=0.11 Score=27.59 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=6.4
Q ss_pred cCCccccCCcccccccC
Q 043964 461 HLKYLNLSCLTSIRKLP 477 (713)
Q Consensus 461 ~Lr~L~L~~~~~i~~lp 477 (713)
+|+.|+|++|. ++.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555555 54444
No 441
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.79 E-value=0.18 Score=47.03 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999986
No 442
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=90.78 E-value=0.3 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..-|.|+|.+|+|||||+..+.+.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 345789999999999999987653
No 443
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=90.78 E-value=0.29 Score=46.39 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.3
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-|.|+|.+|+|||||++...+
T Consensus 2 kivivG~~~vGKTsli~~~~~ 22 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTR 22 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999988755
No 444
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.76 E-value=0.17 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..-|.|+|.+|+|||||+..+..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh
Confidence 45688999999999999988755
No 445
>PLN02165 adenylate isopentenyltransferase
Probab=90.76 E-value=0.18 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|.|+|+.|+||||||..+..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 345999999999999999998776
No 446
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=90.75 E-value=0.18 Score=48.27 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998874
No 447
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.75 E-value=0.18 Score=48.08 Aligned_cols=23 Identities=43% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..|.|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 448
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.74 E-value=0.32 Score=49.78 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=37.6
Q ss_pred eccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecc
Q 043964 173 GRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSE 236 (713)
Q Consensus 173 G~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 236 (713)
++........+++..-.. +....-+-++|..|+|||.||.++.+. ....=-.+.+++++.
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~~ 194 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFPE 194 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHHH
Confidence 344444455555553221 123457889999999999999999995 333223456666553
No 449
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.73 E-value=0.18 Score=48.34 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998873
No 450
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=90.70 E-value=0.18 Score=48.83 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=36.5
Q ss_pred CCCCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 166 IDEEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 166 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.-++++|.+..++.|++=-..--. +....-+-+||..|.|||+++|++.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 3445799999988887763221111 123445667999999999999999883
No 451
>PRK10908 cell division protein FtsE; Provisional
Probab=90.67 E-value=0.18 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 452
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=90.65 E-value=0.25 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-..|.++||.|.||||+++.+.+
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 453
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=90.64 E-value=0.22 Score=49.13 Aligned_cols=44 Identities=25% Similarity=0.212 Sum_probs=30.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhh----CCceeEEEecccc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRK----FDKILWVCVSETF 238 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~----F~~~~wv~vs~~~ 238 (713)
.-.++.|+|.+|.||||||..+.-....... -..++|++-...|
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~ 65 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTF 65 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCc
Confidence 4579999999999999999988643111111 3578887655433
No 454
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=90.63 E-value=0.18 Score=45.14 Aligned_cols=21 Identities=43% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.|+|.+|+|||||+..+.+.
T Consensus 3 v~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 789999999999999988764
No 455
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=90.62 E-value=0.17 Score=52.83 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
--||||+|..|+||||+++.+.-
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG 389 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAG 389 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhc
Confidence 46999999999999999999874
No 456
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=90.61 E-value=0.21 Score=50.51 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHh
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDC 217 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~ 217 (713)
...+|.|.|+.|.||||+++.+-
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH
Confidence 45799999999999999999884
No 457
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=90.61 E-value=0.32 Score=45.50 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-|.|+|-+|+|||||+....+
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~ 23 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTT 23 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999987765
No 458
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=90.60 E-value=0.18 Score=48.01 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|+|.|+.|.||||+++.+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~ 23 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQ 23 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998765
No 459
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.60 E-value=0.19 Score=49.27 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+...
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 460
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.59 E-value=0.18 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 461
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=90.57 E-value=0.18 Score=50.02 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 462
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=90.56 E-value=0.19 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 463
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.56 E-value=0.24 Score=55.94 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=36.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHH
Confidence 479999998888888887432 245677999999999999998876
No 464
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.54 E-value=0.19 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 465
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.54 E-value=0.19 Score=51.92 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=28.1
Q ss_pred EEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSE 236 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 236 (713)
.-+-++|..|+|||+||.++.+. +...=..++++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH
Confidence 56899999999999999999994 333223556665544
No 466
>PRK02496 adk adenylate kinase; Provisional
Probab=90.53 E-value=0.2 Score=47.26 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.8
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|.|++|.||||+|+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 467
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.52 E-value=0.19 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999999964
No 468
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.51 E-value=0.19 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 359999999999999999998873
No 469
>PRK14531 adenylate kinase; Provisional
Probab=90.50 E-value=0.19 Score=47.34 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|-|+|++|.||||+++.+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998866
No 470
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.50 E-value=0.19 Score=48.43 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998873
No 471
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.48 E-value=0.2 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999873
No 472
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=90.48 E-value=0.21 Score=51.72 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=32.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++|.+..++.+.-.+.. .+..-+-+.|..|.||||+|+.+-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~------~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID------PGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc------cCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 4689988887776654442 1233477899999999999998865
No 473
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=90.48 E-value=0.19 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 474
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=90.47 E-value=0.2 Score=45.91 Aligned_cols=21 Identities=38% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|+|+|..|+|||||..++.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 799999999999999999875
No 475
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=90.46 E-value=0.2 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 476
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=90.46 E-value=0.2 Score=47.00 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.|..|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999998873
No 477
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=90.45 E-value=0.58 Score=43.52 Aligned_cols=33 Identities=30% Similarity=0.252 Sum_probs=26.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEE
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVC 233 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~ 233 (713)
+.-||||-|+.-.||||||+.... .|..+.-|+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~------~f~~~~lIh 35 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHR------FFPGCSLIH 35 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHH------HccCCeeec
Confidence 467999999999999999987554 687666554
No 478
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.45 E-value=0.2 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+|.++|.+|+||||++..+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999888763
No 479
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=90.45 E-value=0.2 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 480
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.45 E-value=0.2 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 481
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=90.44 E-value=0.18 Score=46.05 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=18.8
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.|+|.+|+|||||++.+.++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999887753
No 482
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=90.40 E-value=0.19 Score=46.05 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|.|+|.+|+|||||++...+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999887764
No 483
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=90.40 E-value=0.2 Score=47.04 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 484
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=90.38 E-value=0.19 Score=48.70 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 485
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.38 E-value=0.46 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+-|+|..|+|||+|++++++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456889999999999999999994
No 486
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.38 E-value=0.21 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999874
No 487
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.37 E-value=0.2 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 488
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=90.37 E-value=0.37 Score=44.11 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-..|+++|++|+||+||...+..+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 457889999999999999998875
No 489
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.37 E-value=0.27 Score=53.43 Aligned_cols=45 Identities=31% Similarity=0.371 Sum_probs=36.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+.+++..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999998887432 246678899999999999988765
No 490
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.36 E-value=0.34 Score=50.98 Aligned_cols=46 Identities=28% Similarity=0.321 Sum_probs=37.2
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|.+..++.+.+.+..+. -.+-+-++|+.|+||||+|...-+
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999887532 346788999999999999977655
No 491
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.36 E-value=0.2 Score=47.13 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 492
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=90.35 E-value=0.19 Score=50.71 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.5
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
||+|.|-||+||||+|-.+..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~ 22 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSV 22 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 789999999999998877665
No 493
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=90.35 E-value=0.17 Score=45.94 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=16.8
Q ss_pred EEecCCchhHHHHHHHhc
Q 043964 201 IVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 201 I~G~gGiGKTTLa~~v~~ 218 (713)
|+|++|+||||+|+.+..
T Consensus 1 i~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHH
Confidence 689999999999999887
No 494
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=90.33 E-value=0.19 Score=46.51 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEEecCCchhHHHHHHHhch
Q 043964 199 ISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~~ 219 (713)
|+|+|..|+|||||++.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998753
No 495
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=90.33 E-value=0.2 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999985
No 496
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.33 E-value=0.2 Score=50.02 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 497
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=90.33 E-value=0.2 Score=49.51 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999886
No 498
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=90.30 E-value=0.48 Score=50.09 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++|+|+|..|+|||||+..+...
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~ 228 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPE 228 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHH
Confidence 4779999999999999999999983
No 499
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.29 E-value=0.21 Score=46.82 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.|.+|+|+.|.|||||.|.+.-+
T Consensus 27 Gev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 27 GEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred CcEEEEECCCCccHHHHHHHhhCc
Confidence 359999999999999999998874
No 500
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=90.28 E-value=0.2 Score=46.10 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.5
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|.|+|.+|+|||||++...+
T Consensus 3 i~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999987655
Done!