Query 043964
Match_columns 713
No_of_seqs 397 out of 3689
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 17:27:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-28 3.8E-33 274.6 12.2 175 172-360 131-473 (549)
2 4fcg_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 218.3 14.6 221 429-683 79-309 (328)
3 4fcg_A Uncharacterized protein 99.9 9.4E-22 3.2E-26 204.5 12.7 222 400-661 80-311 (328)
4 3sfz_A APAF-1, apoptotic pepti 99.9 8.1E-22 2.8E-26 242.8 13.3 173 168-358 123-452 (1249)
5 3rgz_A Protein brassinosteroid 99.9 1.4E-21 4.9E-26 227.1 13.1 18 693-710 748-766 (768)
6 4ecn_A Leucine-rich repeat pro 99.8 3E-21 1E-25 223.2 14.0 284 378-687 448-787 (876)
7 3v47_A TOLL-like receptor 5B a 99.8 1.5E-20 5.2E-25 205.4 17.6 280 376-683 28-403 (455)
8 1ogq_A PGIP-2, polygalacturona 99.8 4.1E-21 1.4E-25 198.4 11.6 253 378-668 50-308 (313)
9 4eco_A Uncharacterized protein 99.8 4.5E-21 1.5E-25 217.8 11.5 274 377-687 248-547 (636)
10 2id5_A Lingo-1, leucine rich r 99.8 2.6E-20 8.9E-25 204.8 15.8 281 376-687 30-331 (477)
11 3o6n_A APL1; leucine-rich repe 99.8 2.4E-20 8.4E-25 199.3 15.0 274 377-687 44-350 (390)
12 4ecn_A Leucine-rich repeat pro 99.8 7.2E-20 2.5E-24 211.7 19.9 284 377-687 490-838 (876)
13 3vq2_A TLR4, TOLL-like recepto 99.8 5E-20 1.7E-24 209.0 17.5 146 375-534 29-179 (606)
14 4eco_A Uncharacterized protein 99.8 4.3E-20 1.5E-24 209.7 16.9 270 377-688 272-578 (636)
15 1ogq_A PGIP-2, polygalacturona 99.8 3.7E-21 1.3E-25 198.8 5.2 251 401-689 50-304 (313)
16 4fmz_A Internalin; leucine ric 99.8 8.3E-20 2.8E-24 191.9 15.4 258 377-687 65-322 (347)
17 4fmz_A Internalin; leucine ric 99.8 7.7E-20 2.6E-24 192.2 15.1 255 378-687 44-298 (347)
18 3rgz_A Protein brassinosteroid 99.8 2.6E-20 8.9E-25 216.5 12.3 156 430-600 393-549 (768)
19 3o6n_A APL1; leucine-rich repe 99.8 7.5E-20 2.6E-24 195.5 14.2 258 398-687 42-329 (390)
20 3oja_B Anopheles plasmodium-re 99.8 5.9E-20 2E-24 207.3 14.0 273 378-687 51-356 (597)
21 2id5_A Lingo-1, leucine rich r 99.8 9E-20 3.1E-24 200.4 14.4 258 377-663 55-332 (477)
22 2z7x_B TOLL-like receptor 1, v 99.8 1.9E-19 6.5E-24 200.2 15.5 126 377-520 20-150 (520)
23 3oja_B Anopheles plasmodium-re 99.8 1.2E-19 4E-24 204.9 13.7 257 399-687 49-335 (597)
24 1vt4_I APAF-1 related killer D 99.8 2.6E-20 9E-25 210.1 8.2 162 171-352 130-437 (1221)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.1E-19 1.4E-23 199.3 18.0 105 376-495 50-157 (562)
26 3t6q_A CD180 antigen; protein- 99.8 2.4E-19 8.2E-24 203.4 15.3 154 375-542 30-189 (606)
27 2ft3_A Biglycan; proteoglycan, 99.8 7E-19 2.4E-23 183.6 16.8 258 380-687 35-305 (332)
28 2ft3_A Biglycan; proteoglycan, 99.8 6.9E-19 2.4E-23 183.6 16.7 270 377-687 53-331 (332)
29 1xku_A Decorin; proteoglycan, 99.8 7.8E-19 2.7E-23 183.1 16.7 259 381-687 34-304 (330)
30 3v47_A TOLL-like receptor 5B a 99.8 7.5E-19 2.6E-23 191.9 16.3 260 401-687 30-382 (455)
31 3t6q_A CD180 antigen; protein- 99.8 3.2E-19 1.1E-23 202.3 13.5 150 379-542 255-410 (606)
32 2z80_A TOLL-like receptor 2, v 99.8 9.3E-20 3.2E-24 192.0 8.3 265 387-687 40-312 (353)
33 1ziw_A TOLL-like receptor 3; i 99.8 1.2E-18 4.2E-23 200.3 18.4 291 376-686 23-363 (680)
34 2z63_A TOLL-like receptor 4, v 99.8 3E-19 1E-23 201.0 12.9 146 375-534 25-175 (570)
35 3bz5_A Internalin-J, INLJ; leu 99.8 2.6E-18 9E-23 186.6 19.6 240 379-669 43-304 (457)
36 2z66_A Variable lymphocyte rec 99.8 3.3E-19 1.1E-23 183.8 11.9 178 401-598 28-208 (306)
37 1xku_A Decorin; proteoglycan, 99.8 3.1E-18 1.1E-22 178.4 19.1 242 401-687 31-274 (330)
38 3bz5_A Internalin-J, INLJ; leu 99.8 4.7E-18 1.6E-22 184.6 21.0 262 378-685 85-349 (457)
39 1o6v_A Internalin A; bacterial 99.8 1.5E-18 5.1E-23 189.9 16.9 263 377-687 67-364 (466)
40 2z81_A CD282 antigen, TOLL-lik 99.8 3.4E-19 1.1E-23 199.6 11.9 154 377-543 25-183 (549)
41 3vq2_A TLR4, TOLL-like recepto 99.8 4.5E-19 1.6E-23 201.1 12.9 266 377-687 284-556 (606)
42 1o6v_A Internalin A; bacterial 99.8 1.7E-18 6E-23 189.4 16.1 265 377-687 45-320 (466)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.9E-18 1.3E-22 191.3 18.5 122 381-520 34-158 (562)
44 3j0a_A TOLL-like receptor 5; m 99.8 5.5E-18 1.9E-22 199.0 19.9 284 376-687 22-373 (844)
45 2z7x_B TOLL-like receptor 1, v 99.8 1.7E-18 5.7E-23 192.6 13.3 143 381-544 3-150 (520)
46 3zyi_A Leucine-rich repeat-con 99.8 1.1E-17 3.6E-22 182.4 18.9 222 431-687 75-301 (452)
47 3zyj_A Leucine-rich repeat-con 99.8 1.3E-17 4.4E-22 181.1 19.3 202 455-683 83-287 (440)
48 1z6t_A APAF-1, apoptotic prote 99.8 1.6E-18 5.6E-23 195.6 12.2 170 169-356 124-450 (591)
49 2z66_A Variable lymphocyte rec 99.8 3.5E-18 1.2E-22 176.0 13.5 224 430-687 27-259 (306)
50 3zyj_A Leucine-rich repeat-con 99.8 7.7E-18 2.6E-22 182.8 16.2 220 377-628 63-288 (440)
51 4g8a_A TOLL-like receptor 4; l 99.8 8E-18 2.7E-22 191.9 17.1 133 374-520 48-185 (635)
52 3zyi_A Leucine-rich repeat-con 99.7 6.6E-18 2.3E-22 184.0 15.1 198 377-599 74-276 (452)
53 2z63_A TOLL-like receptor 4, v 99.7 4.3E-18 1.5E-22 191.5 12.0 106 377-495 51-160 (570)
54 3g06_A SSPH2 (leucine-rich rep 99.7 2.1E-17 7.1E-22 185.0 17.0 237 377-688 60-296 (622)
55 3j0a_A TOLL-like receptor 5; m 99.7 2.2E-17 7.4E-22 194.0 17.5 279 377-687 47-392 (844)
56 3o53_A Protein LRIM1, AGAP0063 99.7 3.9E-19 1.3E-23 184.1 2.2 16 427-442 54-69 (317)
57 1ziw_A TOLL-like receptor 3; i 99.7 3.2E-17 1.1E-21 188.4 16.9 144 386-545 12-158 (680)
58 2z81_A CD282 antigen, TOLL-lik 99.7 1.8E-17 6.1E-22 185.6 13.5 119 377-505 49-169 (549)
59 1ozn_A Reticulon 4 receptor; N 99.7 6E-18 2.1E-22 172.4 8.8 202 400-630 31-236 (285)
60 3qfl_A MLA10; coiled-coil, (CC 99.7 2.2E-18 7.6E-23 146.7 4.6 81 4-88 1-83 (115)
61 3o53_A Protein LRIM1, AGAP0063 99.7 1.5E-17 5E-22 172.1 11.7 224 420-688 23-249 (317)
62 3oja_A Leucine-rich immune mol 99.7 1.6E-17 5.5E-22 182.0 11.7 166 402-599 35-201 (487)
63 3oja_A Leucine-rich immune mol 99.7 2.3E-18 8E-23 188.7 4.9 185 379-598 35-223 (487)
64 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-16 4.6E-21 162.4 16.5 152 430-599 31-187 (285)
65 2z80_A TOLL-like receptor 2, v 99.7 5.8E-18 2E-22 178.2 6.4 253 376-663 50-313 (353)
66 1h6u_A Internalin H; cell adhe 99.7 2.9E-16 9.8E-21 161.5 13.7 191 397-629 37-227 (308)
67 1wwl_A Monocyte differentiatio 99.7 6.8E-18 2.3E-22 174.2 0.1 243 399-683 41-304 (312)
68 3rfs_A Internalin B, repeat mo 99.7 6.9E-16 2.4E-20 155.8 14.6 185 456-675 59-246 (272)
69 1jl5_A Outer protein YOPM; leu 99.7 2E-16 6.9E-21 171.6 11.4 250 377-683 10-285 (454)
70 2xwt_C Thyrotropin receptor; s 99.7 6.2E-16 2.1E-20 153.0 13.6 198 432-689 32-239 (239)
71 1p9a_G Platelet glycoprotein I 99.7 1.3E-15 4.4E-20 155.1 16.2 79 431-518 31-110 (290)
72 1jl5_A Outer protein YOPM; leu 99.6 2.2E-15 7.5E-20 163.4 18.7 100 427-543 149-248 (454)
73 1h6u_A Internalin H; cell adhe 99.6 4.9E-16 1.7E-20 159.8 12.5 189 377-600 40-228 (308)
74 2o6q_A Variable lymphocyte rec 99.6 3E-15 1E-19 151.0 17.1 124 461-598 38-166 (270)
75 2z62_A TOLL-like receptor 4, v 99.6 4.8E-16 1.6E-20 157.4 11.2 145 377-535 27-176 (276)
76 4g8a_A TOLL-like receptor 4; l 99.6 9.3E-16 3.2E-20 174.7 14.5 137 391-543 44-184 (635)
77 2xwt_C Thyrotropin receptor; s 99.6 4.7E-16 1.6E-20 153.8 9.4 173 401-598 31-214 (239)
78 1p9a_G Platelet glycoprotein I 99.6 1.6E-15 5.6E-20 154.3 13.3 192 378-599 10-205 (290)
79 2ast_B S-phase kinase-associat 99.6 1.7E-17 5.7E-22 173.4 -1.6 160 429-600 91-258 (336)
80 2z62_A TOLL-like receptor 4, v 99.6 4.2E-15 1.4E-19 150.4 15.6 129 431-576 28-159 (276)
81 3g06_A SSPH2 (leucine-rich rep 99.6 7.6E-15 2.6E-19 164.2 18.4 220 376-665 79-298 (622)
82 2o6q_A Variable lymphocyte rec 99.6 2.7E-15 9.2E-20 151.3 13.2 107 427-542 57-167 (270)
83 3rfs_A Internalin B, repeat mo 99.6 6.9E-15 2.3E-19 148.4 13.8 191 397-629 37-232 (272)
84 2ast_B S-phase kinase-associat 99.6 5.4E-17 1.9E-21 169.5 -1.8 203 431-661 70-282 (336)
85 1wwl_A Monocyte differentiatio 99.6 6.3E-15 2.2E-19 151.9 10.4 197 399-629 93-306 (312)
86 4glp_A Monocyte differentiatio 99.6 1.5E-14 5.2E-19 149.0 13.1 196 379-598 92-303 (310)
87 1h6t_A Internalin B; cell adhe 99.5 1.3E-14 4.5E-19 147.7 10.1 168 398-599 43-210 (291)
88 4glp_A Monocyte differentiatio 99.5 3.9E-14 1.3E-18 145.9 13.2 183 399-599 62-261 (310)
89 4ay9_X Follicle-stimulating ho 99.5 2.9E-14 9.9E-19 149.5 12.4 92 427-525 50-145 (350)
90 1h6t_A Internalin B; cell adhe 99.5 4.3E-14 1.5E-18 143.9 12.7 169 428-630 43-211 (291)
91 4ezg_A Putative uncharacterize 99.5 1.3E-14 4.4E-19 138.7 8.3 146 431-598 44-190 (197)
92 1m9s_A Internalin B; cell inva 99.5 4.1E-14 1.4E-18 158.2 12.8 169 398-600 40-208 (605)
93 2ca6_A RAN GTPase-activating p 99.5 4E-16 1.4E-20 166.2 -3.5 250 393-663 24-315 (386)
94 1z7x_W Ribonuclease inhibitor; 99.5 2.8E-16 9.7E-21 171.7 -5.9 36 650-687 369-409 (461)
95 2ca6_A RAN GTPase-activating p 99.5 5.6E-16 1.9E-20 165.1 -3.9 240 424-687 25-314 (386)
96 1m9s_A Internalin B; cell inva 99.5 1.1E-13 3.9E-18 154.5 13.5 170 427-630 39-208 (605)
97 4ay9_X Follicle-stimulating ho 99.5 6.5E-14 2.2E-18 146.8 10.2 204 377-605 29-239 (350)
98 3cvr_A Invasion plasmid antige 99.5 1.5E-13 5.2E-18 151.8 13.7 189 431-668 59-247 (571)
99 3m19_A Variable lymphocyte rec 99.5 9.5E-14 3.2E-18 138.2 10.5 147 432-599 36-189 (251)
100 3m19_A Variable lymphocyte rec 99.5 5.3E-13 1.8E-17 132.8 15.1 172 431-630 14-190 (251)
101 1z7x_W Ribonuclease inhibitor; 99.5 3.6E-16 1.2E-20 170.9 -9.0 122 558-687 219-352 (461)
102 4ezg_A Putative uncharacterize 99.5 1E-13 3.5E-18 132.5 8.7 152 455-628 39-190 (197)
103 3ogk_B Coronatine-insensitive 99.4 6.6E-15 2.2E-19 166.3 -1.8 283 378-687 164-474 (592)
104 1xeu_A Internalin C; cellular 99.4 4.1E-13 1.4E-17 134.4 11.2 146 427-599 37-182 (263)
105 1xeu_A Internalin C; cellular 99.4 1.6E-13 5.5E-18 137.4 7.6 167 429-630 17-183 (263)
106 3ogk_B Coronatine-insensitive 99.4 7.3E-15 2.5E-19 165.9 -2.6 285 377-688 111-448 (592)
107 4b8c_D Glucose-repressible alc 99.4 2.3E-13 8E-18 155.9 9.5 159 377-546 172-330 (727)
108 3cvr_A Invasion plasmid antige 99.4 8.3E-13 2.8E-17 145.9 12.2 173 379-599 60-240 (571)
109 2o6s_A Variable lymphocyte rec 99.4 2.2E-13 7.7E-18 131.3 6.3 104 401-518 28-134 (208)
110 3e6j_A Variable lymphocyte rec 99.4 3E-12 1E-16 125.3 13.3 124 431-598 40-168 (229)
111 2o6s_A Variable lymphocyte rec 99.4 4.5E-12 1.6E-16 122.1 13.4 125 460-598 28-157 (208)
112 3goz_A Leucine-rich repeat-con 99.3 1E-13 3.5E-18 146.1 1.0 84 427-518 46-148 (362)
113 1dce_A Protein (RAB geranylger 99.3 1.4E-14 4.9E-19 160.8 -6.0 202 398-626 346-567 (567)
114 1dce_A Protein (RAB geranylger 99.3 3.4E-14 1.2E-18 157.8 -3.3 200 428-658 346-567 (567)
115 2v9t_B SLIT homolog 2 protein 99.3 6.5E-12 2.2E-16 122.0 13.2 125 431-598 32-161 (220)
116 3goz_A Leucine-rich repeat-con 99.3 2.7E-14 9.2E-19 150.5 -4.3 244 423-687 14-295 (362)
117 2p1m_B Transport inhibitor res 99.3 4E-14 1.4E-18 159.9 -3.3 134 399-541 182-347 (594)
118 2ell_A Acidic leucine-rich nuc 99.3 1.5E-12 5.1E-17 120.8 8.0 105 428-542 21-130 (168)
119 3e6j_A Variable lymphocyte rec 99.3 1.7E-12 5.7E-17 127.1 8.4 143 383-542 24-169 (229)
120 2v70_A SLIT-2, SLIT homolog 2 99.3 6.8E-12 2.3E-16 121.9 12.7 101 432-540 33-137 (220)
121 2p1m_B Transport inhibitor res 99.3 1.8E-14 6.2E-19 162.7 -7.0 205 378-599 105-324 (594)
122 2v9t_B SLIT homolog 2 protein 99.3 2.3E-12 7.8E-17 125.2 7.7 142 385-542 18-162 (220)
123 2v70_A SLIT-2, SLIT homolog 2 99.3 1.2E-11 4.3E-16 120.0 12.6 145 434-598 14-162 (220)
124 2je0_A Acidic leucine-rich nuc 99.3 2.3E-12 7.7E-17 117.0 5.0 104 429-542 15-123 (149)
125 1a9n_A U2A', U2A'; complex (nu 99.3 5E-12 1.7E-16 118.2 6.6 81 428-518 16-98 (176)
126 2ell_A Acidic leucine-rich nuc 99.2 6.5E-12 2.2E-16 116.4 6.8 107 427-543 45-158 (168)
127 2xot_A Amphoterin-induced prot 99.2 2.2E-11 7.5E-16 128.0 10.5 166 404-598 21-198 (361)
128 2xot_A Amphoterin-induced prot 99.2 1.5E-11 5E-16 129.4 9.0 168 382-577 22-200 (361)
129 1a9n_A U2A', U2A'; complex (nu 99.2 7E-12 2.4E-16 117.2 5.4 131 396-543 14-151 (176)
130 2je0_A Acidic leucine-rich nuc 99.2 9.1E-12 3.1E-16 112.9 5.2 126 400-540 16-148 (149)
131 1w8a_A SLIT protein; signaling 99.2 7.6E-11 2.6E-15 111.8 9.8 99 434-542 11-112 (192)
132 4b8c_D Glucose-repressible alc 99.1 2.5E-11 8.5E-16 139.2 6.3 117 449-579 213-329 (727)
133 2wfh_A SLIT homolog 2 protein 99.1 1.8E-10 6.1E-15 109.2 10.5 74 435-518 14-88 (193)
134 1ds9_A Outer arm dynein; leuci 99.1 3.9E-13 1.4E-17 128.4 -10.2 134 427-576 14-150 (198)
135 1w8a_A SLIT protein; signaling 99.1 5.2E-10 1.8E-14 106.0 10.6 124 462-599 10-136 (192)
136 2wfh_A SLIT homolog 2 protein 99.1 8.3E-10 2.9E-14 104.6 11.8 123 462-599 12-136 (193)
137 1ds9_A Outer arm dynein; leuci 99.0 1.3E-12 4.6E-17 124.7 -9.4 107 426-543 43-151 (198)
138 2o6r_A Variable lymphocyte rec 99.0 7.7E-10 2.6E-14 103.3 7.2 104 401-518 28-134 (177)
139 2o6r_A Variable lymphocyte rec 98.9 2.6E-09 9E-14 99.6 10.5 75 434-518 10-86 (177)
140 3sb4_A Hypothetical leucine ri 98.9 3.9E-09 1.3E-13 109.3 11.1 99 565-681 225-327 (329)
141 2r9u_A Variable lymphocyte rec 98.9 2.7E-09 9.1E-14 99.2 8.0 75 434-518 15-91 (174)
142 3g39_A Variable lymphocyte rec 98.9 4.2E-09 1.4E-13 97.4 7.9 99 433-542 11-112 (170)
143 2r9u_A Variable lymphocyte rec 98.7 1E-08 3.5E-13 95.2 5.2 81 431-519 33-116 (174)
144 3g39_A Variable lymphocyte rec 98.6 7.2E-08 2.5E-12 89.0 8.8 100 461-576 10-112 (170)
145 4fdw_A Leucine rich hypothetic 98.6 1.1E-06 3.6E-11 93.1 16.8 238 395-683 130-378 (401)
146 3sb4_A Hypothetical leucine ri 98.5 1.9E-07 6.6E-12 96.4 7.8 100 531-658 225-328 (329)
147 2ifg_A High affinity nerve gro 98.5 2.6E-07 8.7E-12 96.3 8.5 85 427-519 27-114 (347)
148 3un9_A NLR family member X1; l 98.4 3.6E-08 1.2E-12 103.4 0.4 164 400-577 71-250 (372)
149 4fdw_A Leucine rich hypothetic 98.3 5.4E-06 1.8E-10 87.6 15.3 233 400-685 112-355 (401)
150 2ifg_A High affinity nerve gro 98.3 1.2E-06 4.3E-11 91.0 8.4 101 435-545 12-116 (347)
151 2ra8_A Uncharacterized protein 98.1 1.3E-07 4.4E-12 98.3 -2.4 66 473-541 128-202 (362)
152 3un9_A NLR family member X1; l 98.1 7.8E-07 2.7E-11 93.2 2.2 137 401-545 101-252 (372)
153 2ra8_A Uncharacterized protein 98.0 4.8E-07 1.6E-11 94.0 -0.7 35 564-599 277-317 (362)
154 3rw6_A Nuclear RNA export fact 97.9 7.2E-06 2.5E-10 80.7 5.2 87 424-515 163-258 (267)
155 1io0_A Tropomodulin; LRR prote 97.9 1E-05 3.4E-10 75.6 5.8 119 396-519 31-162 (185)
156 4fs7_A Uncharacterized protein 97.8 0.00037 1.3E-08 73.5 16.9 126 394-539 64-215 (394)
157 3e4g_A ATP synthase subunit S, 97.7 1.4E-05 4.9E-10 72.7 3.6 36 401-442 61-96 (176)
158 3e4g_A ATP synthase subunit S, 97.7 9.3E-06 3.2E-10 74.0 1.7 69 617-691 83-154 (176)
159 4fs7_A Uncharacterized protein 97.7 0.00016 5.4E-09 76.4 11.1 213 427-685 158-376 (394)
160 1io0_A Tropomodulin; LRR prote 97.6 1.9E-05 6.6E-10 73.7 2.6 96 420-518 25-133 (185)
161 3rw6_A Nuclear RNA export fact 97.5 2.2E-05 7.4E-10 77.2 0.7 82 457-541 167-260 (267)
162 1w5s_A Origin recognition comp 97.4 6.7E-05 2.3E-09 79.8 3.5 52 168-219 21-75 (412)
163 2qby_A CDC6 homolog 1, cell di 97.3 0.00017 5.8E-09 75.8 4.7 55 168-226 19-73 (386)
164 4gt6_A Cell surface protein; l 97.1 0.0039 1.3E-07 65.6 13.9 100 564-683 263-365 (394)
165 1jbk_A CLPB protein; beta barr 97.1 0.00024 8.1E-09 66.3 4.0 45 169-219 22-66 (195)
166 2qby_B CDC6 homolog 3, cell di 97.1 0.00022 7.5E-09 75.0 3.6 49 169-219 20-68 (384)
167 2qen_A Walker-type ATPase; unk 97.0 0.00027 9.3E-09 73.1 3.5 44 168-219 11-54 (350)
168 2fna_A Conserved hypothetical 97.0 0.00038 1.3E-08 72.2 4.6 53 168-235 12-64 (357)
169 2p65_A Hypothetical protein PF 97.0 0.00033 1.1E-08 64.9 3.4 45 169-219 22-66 (187)
170 2chg_A Replication factor C sm 97.0 0.0006 2.1E-08 65.2 5.1 45 169-219 17-61 (226)
171 2v1u_A Cell division control p 96.8 0.00053 1.8E-08 72.0 3.8 49 169-219 19-67 (387)
172 1njg_A DNA polymerase III subu 96.8 0.00051 1.7E-08 66.7 3.3 46 169-219 23-68 (250)
173 1fnn_A CDC6P, cell division co 96.8 0.00076 2.6E-08 70.9 4.6 51 169-219 17-67 (389)
174 4gt6_A Cell surface protein; l 96.6 0.01 3.4E-07 62.4 11.1 100 563-683 285-386 (394)
175 3n70_A Transport activator; si 96.2 0.0017 5.9E-08 57.4 2.6 46 170-219 2-47 (145)
176 4h09_A Hypothetical leucine ri 96.2 0.073 2.5E-06 55.3 15.1 33 649-683 308-341 (379)
177 2w58_A DNAI, primosome compone 96.2 0.0042 1.4E-07 58.4 5.0 54 177-234 37-90 (202)
178 1sxj_B Activator 1 37 kDa subu 96.1 0.0026 9E-08 64.7 3.2 45 169-219 21-65 (323)
179 3co5_A Putative two-component 96.0 0.002 6.8E-08 56.9 1.7 47 169-219 4-50 (143)
180 1iqp_A RFCS; clamp loader, ext 96.0 0.0038 1.3E-07 63.7 4.1 45 169-219 25-69 (327)
181 3h4m_A Proteasome-activating n 95.9 0.0036 1.2E-07 62.5 3.3 52 168-219 16-74 (285)
182 1rz3_A Hypothetical protein rb 95.9 0.0069 2.4E-07 56.9 5.0 42 174-218 3-44 (201)
183 3te6_A Regulatory protein SIR3 95.9 0.0017 5.8E-08 65.4 0.7 48 170-219 21-68 (318)
184 3ec2_A DNA replication protein 95.8 0.0041 1.4E-07 57.3 3.2 24 196-219 38-61 (180)
185 3bos_A Putative DNA replicatio 95.8 0.011 3.8E-07 57.0 6.2 39 196-236 52-90 (242)
186 3pxg_A Negative regulator of g 95.8 0.0052 1.8E-07 66.1 3.9 44 169-218 180-223 (468)
187 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.0052 1.8E-07 60.4 3.3 52 168-219 5-62 (262)
188 1sxj_D Activator 1 41 kDa subu 95.6 0.0066 2.3E-07 62.6 4.0 46 168-219 36-81 (353)
189 3syl_A Protein CBBX; photosynt 95.6 0.0084 2.9E-07 60.6 4.5 50 170-219 32-90 (309)
190 3lw7_A Adenylate kinase relate 95.5 0.0062 2.1E-07 55.6 2.8 20 197-216 2-21 (179)
191 3c8u_A Fructokinase; YP_612366 95.4 0.011 3.8E-07 55.8 4.4 38 178-219 8-45 (208)
192 1jr3_A DNA polymerase III subu 95.4 0.0083 2.9E-07 62.4 3.8 46 169-219 16-61 (373)
193 3cf0_A Transitional endoplasmi 95.4 0.0086 2.9E-07 60.3 3.7 52 168-219 14-72 (301)
194 2ga8_A Hypothetical 39.9 kDa p 95.3 0.011 3.9E-07 59.8 4.5 46 172-219 2-47 (359)
195 3b9p_A CG5977-PA, isoform A; A 95.3 0.0079 2.7E-07 60.4 3.3 51 169-219 21-77 (297)
196 3pfi_A Holliday junction ATP-d 95.3 0.0058 2E-07 62.7 2.2 50 168-218 28-77 (338)
197 3uk6_A RUVB-like 2; hexameric 95.3 0.013 4.6E-07 60.7 5.0 47 169-219 44-93 (368)
198 1hqc_A RUVB; extended AAA-ATPa 95.3 0.0043 1.5E-07 63.2 1.2 50 169-219 12-61 (324)
199 1zp6_A Hypothetical protein AT 95.2 0.0095 3.2E-07 55.3 3.3 23 196-218 9-31 (191)
200 2chq_A Replication factor C sm 95.2 0.0078 2.7E-07 61.0 2.8 45 169-219 17-61 (319)
201 1sxj_A Activator 1 95 kDa subu 95.2 0.0098 3.4E-07 64.8 3.7 52 168-219 38-100 (516)
202 4h09_A Hypothetical leucine ri 95.2 0.23 7.8E-06 51.5 14.1 17 395-411 63-79 (379)
203 3d8b_A Fidgetin-like protein 1 95.0 0.01 3.5E-07 61.4 3.1 51 169-219 84-140 (357)
204 3eie_A Vacuolar protein sortin 95.0 0.014 4.7E-07 59.4 3.9 52 168-219 17-74 (322)
205 3pvs_A Replication-associated 94.9 0.01 3.6E-07 63.1 2.8 45 169-219 26-73 (447)
206 3kb2_A SPBC2 prophage-derived 94.9 0.01 3.6E-07 53.9 2.5 22 197-218 2-23 (173)
207 1sxj_E Activator 1 40 kDa subu 94.9 0.0091 3.1E-07 61.7 2.3 45 169-218 14-58 (354)
208 1kgd_A CASK, peripheral plasma 94.9 0.011 3.7E-07 54.4 2.6 23 196-218 5-27 (180)
209 3vaa_A Shikimate kinase, SK; s 94.9 0.011 3.8E-07 55.4 2.6 23 196-218 25-47 (199)
210 1in4_A RUVB, holliday junction 94.8 0.0072 2.5E-07 61.9 1.3 50 169-219 25-74 (334)
211 2bjv_A PSP operon transcriptio 94.8 0.012 4.2E-07 57.9 2.8 47 169-219 6-52 (265)
212 1ly1_A Polynucleotide kinase; 94.8 0.013 4.6E-07 53.6 3.0 22 197-218 3-24 (181)
213 1qhx_A CPT, protein (chloramph 94.8 0.012 4.2E-07 53.8 2.6 22 197-218 4-25 (178)
214 1kag_A SKI, shikimate kinase I 94.8 0.011 3.7E-07 53.9 2.2 22 197-218 5-26 (173)
215 1odf_A YGR205W, hypothetical 3 94.8 0.025 8.5E-07 56.3 5.0 26 194-219 29-54 (290)
216 4gp7_A Metallophosphoesterase; 94.7 0.015 5E-07 53.0 3.0 24 195-218 8-31 (171)
217 1d2n_A N-ethylmaleimide-sensit 94.7 0.024 8.2E-07 56.0 4.8 47 170-219 34-87 (272)
218 3tqc_A Pantothenate kinase; bi 94.7 0.02 6.7E-07 57.7 4.2 40 177-218 75-114 (321)
219 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.019 6.5E-07 58.3 4.1 52 168-219 11-68 (322)
220 2kjq_A DNAA-related protein; s 94.7 0.012 4.1E-07 52.2 2.2 24 196-219 36-59 (149)
221 1lv7_A FTSH; alpha/beta domain 94.7 0.013 4.5E-07 57.3 2.7 52 168-219 11-68 (257)
222 3uie_A Adenylyl-sulfate kinase 94.6 0.017 5.9E-07 54.1 3.3 25 195-219 24-48 (200)
223 3pxi_A Negative regulator of g 94.6 0.017 5.8E-07 66.3 3.9 45 169-219 180-224 (758)
224 1knq_A Gluconate kinase; ALFA/ 94.6 0.016 5.5E-07 52.9 3.0 23 196-218 8-30 (175)
225 3fwy_A Light-independent proto 94.6 0.016 5.4E-07 58.4 3.2 25 194-218 46-70 (314)
226 2bdt_A BH3686; alpha-beta prot 94.6 0.016 5.5E-07 53.7 3.0 22 197-218 3-24 (189)
227 1uj2_A Uridine-cytidine kinase 94.6 0.016 5.5E-07 56.5 3.2 24 195-218 21-44 (252)
228 2yvu_A Probable adenylyl-sulfa 94.6 0.02 6.7E-07 52.9 3.6 25 195-219 12-36 (186)
229 1qvr_A CLPB protein; coiled co 94.6 0.014 4.7E-07 68.0 3.0 45 169-219 170-214 (854)
230 2qt1_A Nicotinamide riboside k 94.5 0.02 6.9E-07 53.9 3.5 24 195-218 20-43 (207)
231 1uf9_A TT1252 protein; P-loop, 94.5 0.019 6.7E-07 53.7 3.4 25 194-218 6-30 (203)
232 4fcw_A Chaperone protein CLPB; 94.5 0.022 7.5E-07 57.5 4.0 50 170-219 18-70 (311)
233 3asz_A Uridine kinase; cytidin 94.5 0.02 6.9E-07 54.1 3.3 24 195-218 5-28 (211)
234 1sxj_C Activator 1 40 kDa subu 94.4 0.019 6.4E-07 59.0 3.3 45 169-219 25-69 (340)
235 3tr0_A Guanylate kinase, GMP k 94.4 0.018 6E-07 54.1 2.9 22 197-218 8-29 (205)
236 3trf_A Shikimate kinase, SK; a 94.4 0.017 5.7E-07 53.3 2.6 23 196-218 5-27 (185)
237 2if2_A Dephospho-COA kinase; a 94.4 0.019 6.3E-07 54.0 3.0 22 197-218 2-23 (204)
238 1ye8_A Protein THEP1, hypothet 94.4 0.019 6.4E-07 52.6 2.9 22 198-219 2-23 (178)
239 4eun_A Thermoresistant glucoki 94.4 0.017 5.9E-07 54.1 2.7 24 195-218 28-51 (200)
240 2p5t_B PEZT; postsegregational 94.4 0.028 9.6E-07 54.8 4.3 42 176-218 13-54 (253)
241 1nks_A Adenylate kinase; therm 94.4 0.02 6.8E-07 53.1 3.1 22 197-218 2-23 (194)
242 1ofh_A ATP-dependent HSL prote 94.3 0.019 6.4E-07 57.9 3.0 51 169-219 15-73 (310)
243 2r62_A Cell division protease 94.3 0.014 4.8E-07 57.5 1.9 52 168-219 10-67 (268)
244 3a00_A Guanylate kinase, GMP k 94.3 0.015 5.1E-07 53.8 2.0 22 197-218 2-23 (186)
245 3u61_B DNA polymerase accessor 94.3 0.022 7.5E-07 57.9 3.4 47 168-219 25-71 (324)
246 3t61_A Gluconokinase; PSI-biol 94.3 0.016 5.4E-07 54.4 2.1 23 196-218 18-40 (202)
247 1zuh_A Shikimate kinase; alpha 94.3 0.019 6.4E-07 52.0 2.6 24 195-218 6-29 (168)
248 1jjv_A Dephospho-COA kinase; P 94.2 0.022 7.4E-07 53.6 3.0 22 197-218 3-24 (206)
249 2jaq_A Deoxyguanosine kinase; 94.2 0.02 6.7E-07 53.7 2.7 21 198-218 2-22 (205)
250 1gvn_B Zeta; postsegregational 94.2 0.041 1.4E-06 54.8 5.2 41 177-218 15-55 (287)
251 1cke_A CK, MSSA, protein (cyti 94.2 0.02 6.9E-07 54.7 2.8 22 197-218 6-27 (227)
252 1r6b_X CLPA protein; AAA+, N-t 94.2 0.025 8.5E-07 65.0 4.0 45 169-219 186-230 (758)
253 2rhm_A Putative kinase; P-loop 94.2 0.025 8.6E-07 52.4 3.4 24 195-218 4-27 (193)
254 1xjc_A MOBB protein homolog; s 94.2 0.02 7E-07 51.6 2.6 25 195-219 3-27 (169)
255 2j41_A Guanylate kinase; GMP, 94.1 0.021 7.3E-07 53.6 2.8 23 196-218 6-28 (207)
256 1ukz_A Uridylate kinase; trans 94.1 0.027 9.2E-07 52.8 3.3 24 195-218 14-37 (203)
257 2qp9_X Vacuolar protein sortin 94.1 0.027 9.3E-07 58.0 3.6 52 168-219 50-107 (355)
258 1lvg_A Guanylate kinase, GMP k 94.1 0.018 6.2E-07 53.8 2.0 23 196-218 4-26 (198)
259 1kht_A Adenylate kinase; phosp 94.1 0.022 7.7E-07 52.6 2.7 22 197-218 4-25 (192)
260 3iij_A Coilin-interacting nucl 94.0 0.018 6.1E-07 52.9 1.9 23 196-218 11-33 (180)
261 3tau_A Guanylate kinase, GMP k 94.0 0.021 7.3E-07 53.8 2.5 23 196-218 8-30 (208)
262 3aez_A Pantothenate kinase; tr 94.0 0.028 9.5E-07 56.6 3.4 24 195-218 89-112 (312)
263 2qor_A Guanylate kinase; phosp 94.0 0.019 6.5E-07 54.0 2.0 24 195-218 11-34 (204)
264 2grj_A Dephospho-COA kinase; T 93.9 0.028 9.6E-07 52.1 3.0 24 195-218 11-34 (192)
265 1tev_A UMP-CMP kinase; ploop, 93.9 0.027 9.3E-07 52.2 3.0 23 196-218 3-25 (196)
266 2c95_A Adenylate kinase 1; tra 93.9 0.027 9.1E-07 52.4 2.9 23 196-218 9-31 (196)
267 2ze6_A Isopentenyl transferase 93.9 0.027 9.1E-07 55.0 3.0 22 197-218 2-23 (253)
268 1y63_A LMAJ004144AAA protein; 93.9 0.025 8.6E-07 52.1 2.6 23 196-218 10-32 (184)
269 1ojl_A Transcriptional regulat 93.9 0.022 7.5E-07 57.3 2.4 45 170-218 3-47 (304)
270 2bbw_A Adenylate kinase 4, AK4 93.9 0.026 9E-07 54.8 2.9 23 196-218 27-49 (246)
271 3e70_C DPA, signal recognition 93.8 0.049 1.7E-06 55.1 4.9 25 195-219 128-152 (328)
272 1htw_A HI0065; nucleotide-bind 93.8 0.031 1.1E-06 49.9 3.1 24 195-218 32-55 (158)
273 1via_A Shikimate kinase; struc 93.8 0.023 7.8E-07 51.9 2.2 21 198-218 6-26 (175)
274 3hws_A ATP-dependent CLP prote 93.8 0.03 1E-06 57.9 3.4 50 170-219 16-74 (363)
275 2iyv_A Shikimate kinase, SK; t 93.8 0.02 6.9E-07 52.7 1.8 21 198-218 4-24 (184)
276 3cm0_A Adenylate kinase; ATP-b 93.8 0.03 1E-06 51.5 3.0 23 196-218 4-26 (186)
277 1znw_A Guanylate kinase, GMP k 93.8 0.028 9.6E-07 52.9 2.8 23 196-218 20-42 (207)
278 2zan_A Vacuolar protein sortin 93.7 0.037 1.3E-06 58.9 4.0 52 168-219 133-190 (444)
279 4e22_A Cytidylate kinase; P-lo 93.7 0.028 9.7E-07 54.8 2.8 23 196-218 27-49 (252)
280 3vfd_A Spastin; ATPase, microt 93.7 0.041 1.4E-06 57.6 4.2 51 168-218 114-170 (389)
281 1qf9_A UMP/CMP kinase, protein 93.7 0.033 1.1E-06 51.5 3.1 23 196-218 6-28 (194)
282 2c9o_A RUVB-like 1; hexameric 93.7 0.05 1.7E-06 58.2 4.9 47 169-219 37-86 (456)
283 2bwj_A Adenylate kinase 5; pho 93.7 0.031 1.1E-06 52.1 2.9 23 196-218 12-34 (199)
284 3a4m_A L-seryl-tRNA(SEC) kinas 93.6 0.033 1.1E-06 54.6 3.1 23 196-218 4-26 (260)
285 2f1r_A Molybdopterin-guanine d 93.6 0.023 7.7E-07 51.6 1.7 23 197-219 3-25 (171)
286 2pt5_A Shikimate kinase, SK; a 93.6 0.031 1.1E-06 50.4 2.7 21 198-218 2-22 (168)
287 2f6r_A COA synthase, bifunctio 93.6 0.039 1.3E-06 54.7 3.6 23 195-217 74-96 (281)
288 1ex7_A Guanylate kinase; subst 93.6 0.027 9.3E-07 51.8 2.2 21 198-218 3-23 (186)
289 2hf9_A Probable hydrogenase ni 93.6 0.05 1.7E-06 51.8 4.3 24 195-218 37-60 (226)
290 2jeo_A Uridine-cytidine kinase 93.5 0.037 1.3E-06 53.7 3.3 24 195-218 24-47 (245)
291 1l8q_A Chromosomal replication 93.5 0.045 1.5E-06 55.6 4.1 24 196-219 37-60 (324)
292 4b4t_K 26S protease regulatory 93.5 0.04 1.4E-06 57.8 3.6 53 167-219 170-229 (428)
293 1z6g_A Guanylate kinase; struc 93.5 0.026 8.7E-07 53.7 2.0 23 196-218 23-45 (218)
294 1e6c_A Shikimate kinase; phosp 93.5 0.026 8.8E-07 51.3 2.0 22 197-218 3-24 (173)
295 2r44_A Uncharacterized protein 93.5 0.026 8.8E-07 57.6 2.1 42 169-218 27-68 (331)
296 2z4s_A Chromosomal replication 93.5 0.045 1.5E-06 58.2 4.0 30 196-227 130-159 (440)
297 1sq5_A Pantothenate kinase; P- 93.5 0.069 2.4E-06 53.7 5.2 24 195-218 79-102 (308)
298 2plr_A DTMP kinase, probable t 93.4 0.036 1.2E-06 52.2 3.0 22 197-218 5-26 (213)
299 2pbr_A DTMP kinase, thymidylat 93.4 0.034 1.2E-06 51.6 2.7 21 198-218 2-22 (195)
300 1gtv_A TMK, thymidylate kinase 93.4 0.023 7.9E-07 53.7 1.5 21 198-218 2-22 (214)
301 2cdn_A Adenylate kinase; phosp 93.4 0.035 1.2E-06 51.9 2.7 24 195-218 19-42 (201)
302 2wsm_A Hydrogenase expression/ 93.4 0.047 1.6E-06 51.8 3.7 38 176-219 16-53 (221)
303 3ney_A 55 kDa erythrocyte memb 93.4 0.034 1.1E-06 51.6 2.5 24 195-218 18-41 (197)
304 1rj9_A FTSY, signal recognitio 93.4 0.035 1.2E-06 55.6 2.9 24 195-218 101-124 (304)
305 2i3b_A HCR-ntpase, human cance 93.4 0.03 1E-06 51.7 2.2 24 198-221 3-26 (189)
306 3tw8_B RAS-related protein RAB 93.3 0.068 2.3E-06 48.5 4.6 25 195-219 8-32 (181)
307 3nbx_X ATPase RAVA; AAA+ ATPas 93.3 0.038 1.3E-06 59.4 3.2 42 170-219 23-64 (500)
308 3t15_A Ribulose bisphosphate c 93.3 0.049 1.7E-06 54.4 3.7 25 195-219 35-59 (293)
309 2pez_A Bifunctional 3'-phospho 93.2 0.043 1.5E-06 50.2 3.0 24 195-218 4-27 (179)
310 2vli_A Antibiotic resistance p 93.2 0.032 1.1E-06 51.2 2.1 23 196-218 5-27 (183)
311 4b4t_L 26S protease subunit RP 93.2 0.05 1.7E-06 57.1 3.8 54 166-219 178-238 (437)
312 2pcj_A ABC transporter, lipopr 93.1 0.043 1.5E-06 52.3 3.0 22 197-218 31-52 (224)
313 1vht_A Dephospho-COA kinase; s 93.1 0.048 1.6E-06 51.7 3.3 23 196-218 4-26 (218)
314 1s96_A Guanylate kinase, GMP k 93.1 0.039 1.3E-06 52.4 2.7 23 196-218 16-38 (219)
315 2og2_A Putative signal recogni 93.1 0.081 2.8E-06 54.1 5.1 25 195-219 156-180 (359)
316 1ypw_A Transitional endoplasmi 93.1 0.058 2E-06 61.9 4.5 52 167-218 202-260 (806)
317 3tif_A Uncharacterized ABC tra 93.0 0.044 1.5E-06 52.7 2.9 22 197-218 32-53 (235)
318 4b4t_J 26S protease regulatory 93.0 0.041 1.4E-06 56.8 2.8 54 166-219 145-205 (405)
319 2onk_A Molybdate/tungstate ABC 93.0 0.043 1.5E-06 52.9 2.8 22 197-218 25-46 (240)
320 1zu4_A FTSY; GTPase, signal re 93.0 0.091 3.1E-06 53.0 5.3 26 194-219 103-128 (320)
321 3b9q_A Chloroplast SRP recepto 93.0 0.052 1.8E-06 54.3 3.4 25 195-219 99-123 (302)
322 2qgz_A Helicase loader, putati 93.0 0.082 2.8E-06 53.1 4.9 40 177-219 136-175 (308)
323 1pgv_A TMD-1, tropomodulin TMD 93.0 0.12 4.2E-06 47.7 5.6 116 399-518 39-167 (197)
324 3b85_A Phosphate starvation-in 92.9 0.042 1.4E-06 51.7 2.5 23 197-219 23-45 (208)
325 4b4t_M 26S protease regulatory 92.9 0.052 1.8E-06 57.0 3.4 53 167-219 179-238 (434)
326 1m7g_A Adenylylsulfate kinase; 92.9 0.049 1.7E-06 51.4 2.9 25 195-219 24-48 (211)
327 3rfe_A Platelet glycoprotein I 92.9 0.11 3.9E-06 44.5 5.0 33 461-494 32-65 (130)
328 2wwf_A Thymidilate kinase, put 92.9 0.048 1.6E-06 51.4 2.9 24 196-219 10-33 (212)
329 1nn5_A Similar to deoxythymidy 92.9 0.049 1.7E-06 51.4 2.9 24 196-219 9-32 (215)
330 3nwj_A ATSK2; P loop, shikimat 92.8 0.037 1.3E-06 53.7 2.0 22 197-218 49-70 (250)
331 2z0h_A DTMP kinase, thymidylat 92.8 0.047 1.6E-06 50.7 2.7 21 198-218 2-22 (197)
332 2vp4_A Deoxynucleoside kinase; 92.8 0.062 2.1E-06 51.5 3.6 25 195-219 19-43 (230)
333 1zd8_A GTP:AMP phosphotransfer 92.8 0.051 1.8E-06 51.9 3.0 23 196-218 7-29 (227)
334 4b4t_H 26S protease regulatory 92.7 0.049 1.7E-06 57.1 2.9 52 168-219 208-266 (467)
335 2cbz_A Multidrug resistance-as 92.7 0.051 1.7E-06 52.3 2.9 22 197-218 32-53 (237)
336 4a74_A DNA repair and recombin 92.7 0.057 2E-06 51.5 3.2 24 195-218 24-47 (231)
337 3hu3_A Transitional endoplasmi 92.7 0.047 1.6E-06 58.7 2.8 50 169-218 204-260 (489)
338 2x8a_A Nuclear valosin-contain 92.7 0.044 1.5E-06 54.1 2.4 50 169-218 10-66 (274)
339 2px0_A Flagellar biosynthesis 92.7 0.052 1.8E-06 54.2 3.0 25 195-219 104-128 (296)
340 1aky_A Adenylate kinase; ATP:A 92.7 0.049 1.7E-06 51.7 2.7 23 196-218 4-26 (220)
341 1ixz_A ATP-dependent metallopr 92.7 0.046 1.6E-06 53.3 2.5 51 169-219 16-72 (254)
342 1np6_A Molybdopterin-guanine d 92.7 0.05 1.7E-06 49.4 2.5 25 195-219 5-29 (174)
343 1b0u_A Histidine permease; ABC 92.6 0.053 1.8E-06 53.1 2.9 23 196-218 32-54 (262)
344 3dz8_A RAS-related protein RAB 92.6 0.15 5E-06 47.0 5.8 25 195-219 22-46 (191)
345 3tlx_A Adenylate kinase 2; str 92.6 0.066 2.3E-06 51.8 3.5 24 195-218 28-51 (243)
346 3gfo_A Cobalt import ATP-bindi 92.6 0.053 1.8E-06 53.4 2.9 22 197-218 35-56 (275)
347 2yhs_A FTSY, cell division pro 92.6 0.11 3.7E-06 55.2 5.3 25 195-219 292-316 (503)
348 1ji0_A ABC transporter; ATP bi 92.6 0.055 1.9E-06 52.2 2.9 22 197-218 33-54 (240)
349 3lnc_A Guanylate kinase, GMP k 92.6 0.038 1.3E-06 53.0 1.7 22 197-218 28-50 (231)
350 2ehv_A Hypothetical protein PH 92.5 0.055 1.9E-06 52.4 2.9 23 196-218 30-52 (251)
351 1sgw_A Putative ABC transporte 92.5 0.048 1.6E-06 51.5 2.3 22 197-218 36-57 (214)
352 3ake_A Cytidylate kinase; CMP 92.5 0.056 1.9E-06 50.7 2.8 21 198-218 4-24 (208)
353 3fb4_A Adenylate kinase; psych 92.5 0.056 1.9E-06 51.1 2.8 21 198-218 2-22 (216)
354 2ce7_A Cell division protein F 92.5 0.074 2.5E-06 56.7 4.0 52 168-219 15-72 (476)
355 2pze_A Cystic fibrosis transme 92.5 0.058 2E-06 51.6 2.9 22 197-218 35-56 (229)
356 2v54_A DTMP kinase, thymidylat 92.5 0.056 1.9E-06 50.5 2.7 22 197-218 5-26 (204)
357 1g6h_A High-affinity branched- 92.5 0.057 1.9E-06 52.7 2.9 22 197-218 34-55 (257)
358 1mv5_A LMRA, multidrug resista 92.5 0.062 2.1E-06 52.0 3.1 23 196-218 28-50 (243)
359 2olj_A Amino acid ABC transpor 92.5 0.057 2E-06 52.8 2.9 23 196-218 50-72 (263)
360 2xxa_A Signal recognition part 92.5 0.12 4E-06 54.5 5.5 41 178-218 79-122 (433)
361 3umf_A Adenylate kinase; rossm 92.4 0.07 2.4E-06 50.4 3.3 25 194-218 27-51 (217)
362 4g1u_C Hemin import ATP-bindin 92.4 0.059 2E-06 52.8 2.8 22 197-218 38-59 (266)
363 1g8p_A Magnesium-chelatase 38 92.4 0.046 1.6E-06 56.1 2.2 44 169-218 24-67 (350)
364 2d2e_A SUFC protein; ABC-ATPas 92.4 0.06 2E-06 52.3 2.9 22 197-218 30-51 (250)
365 3dl0_A Adenylate kinase; phosp 92.4 0.06 2.1E-06 50.9 2.8 21 198-218 2-22 (216)
366 1vpl_A ABC transporter, ATP-bi 92.3 0.061 2.1E-06 52.3 2.9 22 197-218 42-63 (256)
367 1vma_A Cell division protein F 92.3 0.075 2.6E-06 53.2 3.5 25 195-219 103-127 (306)
368 2ff7_A Alpha-hemolysin translo 92.3 0.063 2.1E-06 52.0 2.9 22 197-218 36-57 (247)
369 3d3q_A TRNA delta(2)-isopenten 92.3 0.063 2.2E-06 54.2 2.9 22 197-218 8-29 (340)
370 3p32_A Probable GTPase RV1496/ 92.3 0.1 3.5E-06 53.7 4.6 37 178-218 65-101 (355)
371 3r20_A Cytidylate kinase; stru 92.2 0.065 2.2E-06 51.2 2.8 23 196-218 9-31 (233)
372 2zu0_C Probable ATP-dependent 92.2 0.064 2.2E-06 52.6 2.9 22 197-218 47-68 (267)
373 2ghi_A Transport protein; mult 92.2 0.065 2.2E-06 52.4 2.9 22 197-218 47-68 (260)
374 1zak_A Adenylate kinase; ATP:A 92.2 0.055 1.9E-06 51.5 2.3 23 196-218 5-27 (222)
375 2ixe_A Antigen peptide transpo 92.2 0.065 2.2E-06 52.7 2.9 22 197-218 46-67 (271)
376 2qi9_C Vitamin B12 import ATP- 92.2 0.067 2.3E-06 51.8 2.9 22 197-218 27-48 (249)
377 3end_A Light-independent proto 92.1 0.071 2.4E-06 53.6 3.2 26 193-218 38-63 (307)
378 1um8_A ATP-dependent CLP prote 92.1 0.075 2.6E-06 55.2 3.4 49 170-218 22-94 (376)
379 2ged_A SR-beta, signal recogni 92.1 0.092 3.2E-06 48.4 3.7 25 195-219 47-71 (193)
380 2yz2_A Putative ABC transporte 92.1 0.069 2.3E-06 52.4 2.9 22 197-218 34-55 (266)
381 2nq2_C Hypothetical ABC transp 92.0 0.07 2.4E-06 51.9 2.9 22 197-218 32-53 (253)
382 3rfe_A Platelet glycoprotein I 92.0 0.14 4.9E-06 43.8 4.5 52 464-519 12-66 (130)
383 2ihy_A ABC transporter, ATP-bi 92.0 0.071 2.4E-06 52.6 2.9 22 197-218 48-69 (279)
384 1iy2_A ATP-dependent metallopr 91.9 0.063 2.2E-06 53.1 2.5 52 168-219 39-96 (278)
385 3be4_A Adenylate kinase; malar 91.9 0.07 2.4E-06 50.5 2.7 22 197-218 6-27 (217)
386 3cf2_A TER ATPase, transitiona 91.9 0.15 5.3E-06 57.7 5.8 54 166-219 201-261 (806)
387 3m6a_A ATP-dependent protease 91.9 0.054 1.8E-06 59.2 2.0 51 169-219 81-131 (543)
388 2v3c_C SRP54, signal recogniti 91.8 0.1 3.5E-06 54.9 4.1 42 178-219 78-122 (432)
389 1e4v_A Adenylate kinase; trans 91.8 0.079 2.7E-06 50.0 2.9 21 198-218 2-22 (214)
390 1oix_A RAS-related protein RAB 91.8 0.088 3E-06 48.7 3.1 25 195-219 28-52 (191)
391 3dm5_A SRP54, signal recogniti 91.8 0.16 5.3E-06 53.4 5.3 24 195-218 99-122 (443)
392 3kl4_A SRP54, signal recogniti 91.8 0.14 4.9E-06 53.6 5.0 25 195-219 96-120 (433)
393 2eyu_A Twitching motility prot 91.7 0.15 5.1E-06 49.8 4.8 23 196-218 25-47 (261)
394 2xb4_A Adenylate kinase; ATP-b 91.6 0.08 2.7E-06 50.4 2.7 21 198-218 2-22 (223)
395 3nh6_A ATP-binding cassette SU 91.5 0.077 2.6E-06 53.0 2.5 23 196-218 80-102 (306)
396 1q3t_A Cytidylate kinase; nucl 91.5 0.088 3E-06 50.6 2.9 24 195-218 15-38 (236)
397 2q3h_A RAS homolog gene family 91.5 0.13 4.4E-06 47.8 4.0 26 195-220 19-44 (201)
398 3sop_A Neuronal-specific septi 91.5 0.087 3E-06 51.7 2.8 22 198-219 4-25 (270)
399 2v9p_A Replication protein E1; 91.4 0.089 3E-06 52.4 2.9 24 195-218 125-148 (305)
400 1a7j_A Phosphoribulokinase; tr 91.4 0.057 2E-06 53.7 1.4 24 195-218 4-27 (290)
401 1ls1_A Signal recognition part 91.4 0.099 3.4E-06 52.1 3.2 24 196-219 98-121 (295)
402 2pjz_A Hypothetical protein ST 91.3 0.094 3.2E-06 51.2 2.9 22 197-218 31-52 (263)
403 2wji_A Ferrous iron transport 91.3 0.11 3.7E-06 46.6 3.2 23 197-219 4-26 (165)
404 4b4t_I 26S protease regulatory 91.3 0.11 3.7E-06 54.0 3.4 53 167-219 180-239 (437)
405 2dhr_A FTSH; AAA+ protein, hex 91.2 0.085 2.9E-06 56.6 2.7 52 168-219 30-87 (499)
406 1yrb_A ATP(GTP)binding protein 91.2 0.11 3.9E-06 50.6 3.4 25 194-218 12-36 (262)
407 2j1l_A RHO-related GTP-binding 91.2 0.17 5.9E-06 47.6 4.6 25 195-219 33-57 (214)
408 2j37_W Signal recognition part 91.2 0.19 6.4E-06 53.9 5.2 41 178-218 80-123 (504)
409 2zej_A Dardarin, leucine-rich 91.1 0.097 3.3E-06 48.0 2.6 22 198-219 4-25 (184)
410 2bbs_A Cystic fibrosis transme 91.0 0.11 3.6E-06 51.6 3.0 22 197-218 65-86 (290)
411 1ak2_A Adenylate kinase isoenz 91.0 0.1 3.4E-06 50.1 2.7 23 196-218 16-38 (233)
412 2vhj_A Ntpase P4, P4; non- hyd 91.0 0.11 3.8E-06 51.8 3.0 34 196-234 123-156 (331)
413 1tue_A Replication protein E1; 91.0 0.15 5.1E-06 47.2 3.6 24 196-219 58-81 (212)
414 1ltq_A Polynucleotide kinase; 91.0 0.11 3.6E-06 52.1 3.0 22 197-218 3-24 (301)
415 3crm_A TRNA delta(2)-isopenten 90.9 0.11 3.7E-06 52.1 2.9 22 197-218 6-27 (323)
416 2cvh_A DNA repair and recombin 90.9 0.11 3.7E-06 49.1 2.8 34 196-234 20-53 (220)
417 3q3j_B RHO-related GTP-binding 90.8 0.13 4.4E-06 48.6 3.2 24 196-219 27-50 (214)
418 2f9l_A RAB11B, member RAS onco 90.8 0.12 4E-06 48.1 2.9 24 196-219 5-28 (199)
419 1nij_A Hypothetical protein YJ 90.8 0.12 4.1E-06 52.2 3.2 24 195-218 3-26 (318)
420 2dyk_A GTP-binding protein; GT 90.6 0.13 4.4E-06 45.6 2.9 23 197-219 2-24 (161)
421 1cp2_A CP2, nitrogenase iron p 90.6 0.13 4.4E-06 50.5 3.2 37 197-235 2-38 (269)
422 2afh_E Nitrogenase iron protei 90.6 0.13 4.6E-06 51.0 3.3 23 196-218 2-24 (289)
423 1g41_A Heat shock protein HSLU 90.5 0.16 5.5E-06 53.3 4.0 50 169-218 15-72 (444)
424 2w0m_A SSO2452; RECA, SSPF, un 90.5 0.12 4.2E-06 49.2 2.9 23 197-219 24-46 (235)
425 3k1j_A LON protease, ATP-depen 90.5 0.11 3.7E-06 57.8 2.7 42 169-218 41-82 (604)
426 1svm_A Large T antigen; AAA+ f 90.5 0.15 5.2E-06 52.5 3.6 24 195-218 168-191 (377)
427 2ce2_X GTPase HRAS; signaling 90.5 0.12 4.1E-06 45.9 2.6 22 198-219 5-26 (166)
428 3zvl_A Bifunctional polynucleo 90.4 0.14 4.6E-06 54.0 3.3 25 195-219 257-281 (416)
429 2wjg_A FEOB, ferrous iron tran 90.4 0.16 5.4E-06 46.5 3.4 24 196-219 7-30 (188)
430 3tui_C Methionine import ATP-b 90.4 0.13 4.3E-06 52.6 2.9 23 196-218 54-76 (366)
431 4eaq_A DTMP kinase, thymidylat 90.3 0.14 4.7E-06 49.0 2.9 25 195-219 25-49 (229)
432 3gj0_A GTP-binding nuclear pro 90.2 0.14 4.6E-06 48.6 2.8 23 195-217 14-36 (221)
433 1pgv_A TMD-1, tropomodulin TMD 90.2 0.28 9.5E-06 45.3 4.8 96 420-518 30-136 (197)
434 2ocp_A DGK, deoxyguanosine kin 90.2 0.15 5.2E-06 49.0 3.2 23 196-218 2-24 (241)
435 3fvq_A Fe(3+) IONS import ATP- 90.2 0.14 4.8E-06 52.2 3.0 22 197-218 31-52 (359)
436 1n0w_A DNA repair protein RAD5 90.1 0.14 4.7E-06 49.3 2.8 23 196-218 24-46 (243)
437 3exa_A TRNA delta(2)-isopenten 90.1 0.14 4.9E-06 50.8 2.9 23 196-218 3-25 (322)
438 2hup_A RAS-related protein RAB 90.1 0.22 7.6E-06 46.3 4.2 25 195-219 28-52 (201)
439 1cr0_A DNA primase/helicase; R 90.0 0.14 4.9E-06 51.0 3.0 24 196-219 35-58 (296)
440 1z2a_A RAS-related protein RAB 90.0 0.13 4.4E-06 45.9 2.4 25 195-219 4-28 (168)
441 3pxi_A Negative regulator of g 90.0 0.34 1.2E-05 55.5 6.4 51 169-219 491-544 (758)
442 3kta_A Chromosome segregation 90.0 0.16 5.3E-06 46.4 3.0 21 198-218 28-48 (182)
443 2gj8_A MNME, tRNA modification 90.0 0.15 5E-06 46.1 2.8 23 197-219 5-27 (172)
444 3sr0_A Adenylate kinase; phosp 90.0 0.14 4.9E-06 47.9 2.8 21 198-218 2-22 (206)
445 1j8m_F SRP54, signal recogniti 89.9 0.14 4.7E-06 51.1 2.7 24 196-219 98-121 (297)
446 3con_A GTPase NRAS; structural 89.9 0.13 4.5E-06 47.2 2.5 23 197-219 22-44 (190)
447 3ch4_B Pmkase, phosphomevalona 89.9 0.2 6.8E-06 46.3 3.5 24 195-218 10-33 (202)
448 3a8t_A Adenylate isopentenyltr 89.9 0.16 5.5E-06 51.1 3.1 23 196-218 40-62 (339)
449 2nzj_A GTP-binding protein REM 89.8 0.15 5E-06 46.0 2.6 24 196-219 4-27 (175)
450 1nlf_A Regulatory protein REPA 89.8 0.16 5.3E-06 50.3 3.0 23 196-218 30-52 (279)
451 2zr9_A Protein RECA, recombina 89.7 0.26 8.9E-06 50.3 4.7 42 196-239 61-102 (349)
452 3hr8_A Protein RECA; alpha and 89.7 0.32 1.1E-05 49.6 5.3 42 195-238 60-101 (356)
453 2qnr_A Septin-2, protein NEDD5 89.7 0.15 5E-06 51.0 2.7 22 196-218 19-40 (301)
454 3q72_A GTP-binding protein RAD 89.6 0.16 5.5E-06 45.3 2.7 22 198-219 4-25 (166)
455 1p5z_B DCK, deoxycytidine kina 89.6 0.14 4.7E-06 50.2 2.4 24 195-218 23-46 (263)
456 1z47_A CYSA, putative ABC-tran 89.6 0.16 5.4E-06 51.8 2.9 22 197-218 42-63 (355)
457 3t1o_A Gliding protein MGLA; G 89.6 0.15 5E-06 47.1 2.5 24 195-218 13-36 (198)
458 1svi_A GTP-binding protein YSX 89.6 0.19 6.5E-06 46.2 3.3 25 195-219 22-46 (195)
459 1tq4_A IIGP1, interferon-induc 89.6 0.17 5.8E-06 52.8 3.1 24 195-218 68-91 (413)
460 1pui_A ENGB, probable GTP-bind 89.5 0.14 4.9E-06 47.8 2.4 25 195-219 25-49 (210)
461 1f6b_A SAR1; gtpases, N-termin 89.5 0.16 5.4E-06 47.2 2.6 23 197-219 26-48 (198)
462 2p67_A LAO/AO transport system 89.5 0.29 9.9E-06 49.9 4.8 24 195-218 55-78 (341)
463 1u8z_A RAS-related protein RAL 89.4 0.16 5.3E-06 45.3 2.5 24 196-219 4-27 (168)
464 2qm8_A GTPase/ATPase; G protei 89.4 0.28 9.6E-06 49.9 4.6 24 195-218 54-77 (337)
465 1fzq_A ADP-ribosylation factor 89.4 0.23 7.8E-06 45.3 3.6 25 195-219 15-39 (181)
466 2lkc_A Translation initiation 89.4 0.2 6.8E-06 45.3 3.2 25 195-219 7-31 (178)
467 2erx_A GTP-binding protein DI- 89.3 0.17 5.8E-06 45.3 2.7 23 197-219 4-26 (172)
468 1lw7_A Transcriptional regulat 89.3 0.18 6.2E-06 52.0 3.2 23 196-218 170-192 (365)
469 1m7b_A RND3/RHOE small GTP-bin 89.3 0.17 5.7E-06 46.3 2.6 25 195-219 6-30 (184)
470 1c1y_A RAS-related protein RAP 89.3 0.16 5.6E-06 45.2 2.5 22 198-219 5-26 (167)
471 2www_A Methylmalonic aciduria 89.2 0.2 6.8E-06 51.3 3.3 24 195-218 73-96 (349)
472 2yyz_A Sugar ABC transporter, 89.2 0.17 5.9E-06 51.7 2.9 22 197-218 30-51 (359)
473 3foz_A TRNA delta(2)-isopenten 89.2 0.19 6.4E-06 49.9 2.9 24 195-218 9-32 (316)
474 3d31_A Sulfate/molybdate ABC t 89.2 0.16 5.5E-06 51.7 2.5 22 197-218 27-48 (348)
475 1z08_A RAS-related protein RAB 89.1 0.17 5.7E-06 45.3 2.4 25 195-219 5-29 (170)
476 2it1_A 362AA long hypothetical 89.1 0.18 6.1E-06 51.6 2.9 22 197-218 30-51 (362)
477 3rlf_A Maltose/maltodextrin im 89.1 0.18 6.1E-06 51.9 2.9 22 197-218 30-51 (381)
478 3q85_A GTP-binding protein REM 89.0 0.24 8.1E-06 44.3 3.4 23 196-218 2-24 (169)
479 3gmt_A Adenylate kinase; ssgci 89.0 0.17 5.9E-06 47.9 2.5 23 196-218 8-30 (230)
480 2h92_A Cytidylate kinase; ross 89.0 0.16 5.4E-06 48.0 2.2 22 197-218 4-25 (219)
481 1g29_1 MALK, maltose transport 89.0 0.18 6.3E-06 51.8 2.9 22 197-218 30-51 (372)
482 1z0j_A RAB-22, RAS-related pro 88.9 0.18 6E-06 45.1 2.5 24 196-219 6-29 (170)
483 1v43_A Sugar-binding transport 88.9 0.19 6.5E-06 51.6 2.9 22 197-218 38-59 (372)
484 1ek0_A Protein (GTP-binding pr 88.8 0.18 6.2E-06 45.0 2.5 22 198-219 5-26 (170)
485 1u94_A RECA protein, recombina 88.8 0.33 1.1E-05 49.7 4.5 42 196-239 63-104 (356)
486 2obl_A ESCN; ATPase, hydrolase 88.8 0.2 6.7E-06 51.2 2.9 24 196-219 71-94 (347)
487 2cxx_A Probable GTP-binding pr 88.8 0.21 7.1E-06 45.7 2.8 22 198-219 3-24 (190)
488 2fn4_A P23, RAS-related protei 88.7 0.27 9.2E-06 44.4 3.6 25 195-219 8-32 (181)
489 3cr8_A Sulfate adenylyltranfer 88.7 0.19 6.7E-06 54.5 3.0 24 195-218 368-391 (552)
490 3llu_A RAS-related GTP-binding 88.7 0.21 7.1E-06 46.2 2.8 24 195-218 19-42 (196)
491 1oxx_K GLCV, glucose, ABC tran 88.7 0.15 5E-06 52.2 1.8 22 197-218 32-53 (353)
492 2hxs_A RAB-26, RAS-related pro 88.6 0.22 7.4E-06 45.0 2.8 25 195-219 5-29 (178)
493 1kao_A RAP2A; GTP-binding prot 88.6 0.19 6.6E-06 44.6 2.5 23 197-219 4-26 (167)
494 2dr3_A UPF0273 protein PH0284; 88.6 0.36 1.2E-05 46.4 4.6 23 196-218 23-45 (247)
495 3ihw_A Centg3; RAS, centaurin, 88.5 0.19 6.6E-06 46.0 2.4 24 195-218 19-42 (184)
496 1r8s_A ADP-ribosylation factor 88.5 0.2 6.8E-06 44.5 2.5 20 199-218 3-22 (164)
497 1m2o_B GTP-binding protein SAR 88.5 0.2 7E-06 46.0 2.6 22 197-218 24-45 (190)
498 1nrj_B SR-beta, signal recogni 88.5 0.21 7.3E-06 47.0 2.8 25 195-219 11-35 (218)
499 1moz_A ARL1, ADP-ribosylation 88.4 0.31 1E-05 44.2 3.8 24 195-218 17-40 (183)
500 3c5c_A RAS-like protein 12; GD 88.4 0.2 6.8E-06 46.0 2.5 25 195-219 20-44 (187)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=1.1e-28 Score=274.56 Aligned_cols=175 Identities=18% Similarity=0.278 Sum_probs=143.3
Q ss_pred EeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc--hHHHHhhCCceeEEEecccc--cc-------
Q 043964 172 YGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN--HEEVIRKFDKILWVCVSETF--EE------- 240 (713)
Q Consensus 172 vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~------- 240 (713)
|||++++++|+++|.... +...+||+||||||+||||||++||+ +.+++.+|+.++||+|++.+ +.
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997542 23689999999999999999999998 67889999999999999863 11
Q ss_pred --------------------------------------------------------------------------------
Q 043964 241 -------------------------------------------------------------------------------- 240 (713)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (713)
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~ 287 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEF 287 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeE
Confidence
Q ss_pred -----------------ccccCCCchhchHHHHHHHHHHHhcCCCCchhH------------------------------
Q 043964 241 -----------------IAFHGRSIEECEKLEQIGQKIASRCKGLPLAAK------------------------------ 273 (713)
Q Consensus 241 -----------------~~f~~~~~~~~~~l~~i~~~i~~~c~GlPlai~------------------------------ 273 (713)
++|+.. .++.+++++++|+++|+|+||||+
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~ 364 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVE 364 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTC
T ss_pred EECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHH
Confidence 122211 136788899999999999999997
Q ss_pred ----------------HHh-----------hhccCCCCCccChHHHHHHHHHc--CccccCC-CccHHHHHHHHHHHHHh
Q 043964 274 ----------------CFS-----------YCAIFPKDFNIMKEKLITMWMAQ--GYFSVEQ-DEEVDIIGEEYFNILAT 323 (713)
Q Consensus 274 ----------------cfl-----------~~~~fp~~~~i~~~~Li~~Wiae--g~i~~~~-~~~~e~~~~~~~~eL~~ 323 (713)
||+ |||+||+++.|+ +++|+|+ ||+.... +...+++++ ||++|++
T Consensus 365 ~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~ 439 (549)
T 2a5y_B 365 CITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSK 439 (549)
T ss_dssp CCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTT
T ss_pred HHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHH
Confidence 999 999999999999 8999999 9998766 566788888 9999999
Q ss_pred CcCCcccccCCCCceeEEEeChHHHHHHHHhhccccc
Q 043964 324 HSFFQEFKKDDDNLIVACKMHDIVHDFAQFVSQNECS 360 (713)
Q Consensus 324 ~~ll~~~~~~~~~~~~~~~mhdlv~dla~~i~~~e~~ 360 (713)
+||++....+ ...+|+|||++|++|++++.+++.
T Consensus 440 rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 440 RGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp BSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred cCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 9999987643 345799999999999999987764
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.4e-23 Score=218.26 Aligned_cols=221 Identities=20% Similarity=0.293 Sum_probs=191.7
Q ss_pred cCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCC
Q 043964 429 KLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLI 508 (713)
Q Consensus 429 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 508 (713)
....++.|+|+++. +..+|..++++++|++|+|++|. +..+|..++++++|++|++++|. +..+|..+++++
T Consensus 79 ~~~~l~~L~L~~n~------l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRSVP------LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp TSTTCCEEEEESSC------CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred cccceeEEEccCCC------chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 46789999999999 77899999999999999999998 77999999999999999999998 779999999999
Q ss_pred ccceeeccCcccCCcccccCcC---------CCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCC
Q 043964 509 NMKHLLNERTDSLGRMPAGIAR---------LTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENC 579 (713)
Q Consensus 509 ~L~~L~l~~~~~l~~~p~~i~~---------l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 579 (713)
+|++|++++|.....+|..++. +++|++|++..+... .+|.++..+++|+.|+|++|..
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~lp~~l~~l~~L~~L~L~~N~l- 218 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-----------SLPASIANLQNLKSLKIRNSPL- 218 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-----------CCCGGGGGCTTCCEEEEESSCC-
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-----------cchHhhcCCCCCCEEEccCCCC-
Confidence 9999999999888888887765 999999999988654 3888999999999999999954
Q ss_pred CCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccc
Q 043964 580 NQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTI 658 (713)
Q Consensus 580 ~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l 658 (713)
..+|. ++.+++|+.|+|++|.....++..+ ..+++|++|+++++..+..++.... .+++|+.|+|
T Consensus 219 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~------~~l~~L~~L~L~~n~~~~~~p~~~~--------~l~~L~~L~L 284 (328)
T 4fcg_A 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIF------GGRAPLKRLILKDCSNLLTLPLDIH--------RLTQLEKLDL 284 (328)
T ss_dssp CCCCGGGGGCTTCCEEECTTCTTCCBCCCCT------TCCCCCCEEECTTCTTCCBCCTTGG--------GCTTCCEEEC
T ss_pred CcCchhhccCCCCCEEECcCCcchhhhHHHh------cCCCCCCEEECCCCCchhhcchhhh--------cCCCCCEEeC
Confidence 45655 8899999999999887665544332 3689999999999887776665533 8999999999
Q ss_pred cccccCCCCCCCCCCCCCccEEEEE
Q 043964 659 DSCPKLKALPDHFHQTTTLKELIIR 683 (713)
Q Consensus 659 ~~c~~L~~lp~~l~~l~~L~~L~i~ 683 (713)
++|+.+..+|..+.++++|+.+.+.
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCchhhccHHHhhccCceEEeCC
Confidence 9999999999999999999999887
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=9.4e-22 Score=204.50 Aligned_cols=222 Identities=22% Similarity=0.330 Sum_probs=154.0
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCcc
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEP 479 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~ 479 (713)
..+++.|++.++.+. .+++. +..+++|++|+|++|. +..+|..++++++|++|+|++|. +..+|..
T Consensus 80 ~~~l~~L~L~~n~l~------~lp~~-l~~l~~L~~L~L~~n~------l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVPLP------QFPDQ-AFRLSHLQHMTIDAAG------LMELPDTMQQFAGLETLTLARNP-LRALPAS 145 (328)
T ss_dssp STTCCEEEEESSCCS------SCCSC-GGGGTTCSEEEEESSC------CCCCCSCGGGGTTCSEEEEESCC-CCCCCGG
T ss_pred ccceeEEEccCCCch------hcChh-hhhCCCCCEEECCCCC------ccchhHHHhccCCCCEEECCCCc-cccCcHH
Confidence 356677777766532 11222 4557777777777777 55677777777777888877777 6677777
Q ss_pred ccCCCCCcEEeccCccCccccchhhcc---------CCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccC
Q 043964 480 LCELYNLEKLDISHCWYLKELPEGIGK---------LINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDG 550 (713)
Q Consensus 480 i~~L~~L~~L~l~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~ 550 (713)
++++++|++|++++|..+..+|..+.. +++|++|++++| .+..+|..++.+++|++|++..+....
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~---- 220 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA---- 220 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC----
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc----
Confidence 777777788877777767777776654 777888887777 444777777777777777777665432
Q ss_pred CCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccc
Q 043964 551 HKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWM 629 (713)
Q Consensus 551 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~ 629 (713)
+|..+..+++|+.|+|++|.....+|. ++.+++|+.|+|++|..+..++..+ ..+++|+.|+++++
T Consensus 221 -------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~------~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 221 -------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI------HRLTQLEKLDLRGC 287 (328)
T ss_dssp -------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG------GGCTTCCEEECTTC
T ss_pred -------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh------hcCCCCCEEeCCCC
Confidence 666677778888888888777667766 7778888888888776655544332 25778888888877
Q ss_pred cccccccccccccccccccccccccccccccc
Q 043964 630 LELKEWNYGITRTGNAFINIMPRLSSLTIDSC 661 (713)
Q Consensus 630 ~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 661 (713)
+.+..++.... .+++|+.+.+...
T Consensus 288 ~~~~~iP~~l~--------~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 288 VNLSRLPSLIA--------QLPANCIILVPPH 311 (328)
T ss_dssp TTCCCCCGGGG--------GSCTTCEEECCGG
T ss_pred CchhhccHHHh--------hccCceEEeCCHH
Confidence 76666655433 6777777776643
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=8.1e-22 Score=242.80 Aligned_cols=173 Identities=20% Similarity=0.298 Sum_probs=137.0
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHH-HhhC-CceeEEEecccccc-----
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEV-IRKF-DKILWVCVSETFEE----- 240 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~----- 240 (713)
...+|||++++++|.++|.... ++.++|+|+||||+||||||+++|++.++ ..+| +.+.||++++.++.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 4569999999999999997543 36899999999999999999999998654 5556 56779999874331
Q ss_pred -----------------------------------------------------cccc--------------------CCC
Q 043964 241 -----------------------------------------------------IAFH--------------------GRS 247 (713)
Q Consensus 241 -----------------------------------------------------~~f~--------------------~~~ 247 (713)
..|+ ...
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~ 278 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKH 278 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBC
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCce
Confidence 0000 000
Q ss_pred -------c--------------hhchHHHHHHHHHHHhcCCCCchhH---------------------------------
Q 043964 248 -------I--------------EECEKLEQIGQKIASRCKGLPLAAK--------------------------------- 273 (713)
Q Consensus 248 -------~--------------~~~~~l~~i~~~i~~~c~GlPlai~--------------------------------- 273 (713)
. ...+.+.+++++|+++|+|+||||+
T Consensus 279 ~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 358 (1249)
T 3sfz_A 279 VVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSS 358 (1249)
T ss_dssp CEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTC
T ss_pred EEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccc
Confidence 0 0112334578999999999999998
Q ss_pred -----------------------HHhhhccCCCCCccChHHHHHHHHHcCccccCCCccHHHHHHHHHHHHHhCcCCccc
Q 043964 274 -----------------------CFSYCAIFPKDFNIMKEKLITMWMAQGYFSVEQDEEVDIIGEEYFNILATHSFFQEF 330 (713)
Q Consensus 274 -----------------------cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~e~~~~~~~~eL~~~~ll~~~ 330 (713)
||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++..
T Consensus 359 ~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 359 YDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp TTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEE
T ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEe
Confidence 99999999999999999999999664 36789999999999999965
Q ss_pred ccCCCCceeEEEeChHHHHHHHHhhccc
Q 043964 331 KKDDDNLIVACKMHDIVHDFAQFVSQNE 358 (713)
Q Consensus 331 ~~~~~~~~~~~~mhdlv~dla~~i~~~e 358 (713)
. .+...+|+|||++|++++..+.++
T Consensus 428 ~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 R---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp E---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred c---CCCceEEEecHHHHHHHHhhhhHH
Confidence 4 344467999999999999987765
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.4e-21 Score=227.11 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=1.8
Q ss_pred hccC-CCCcCcccCcCccc
Q 043964 693 YRNR-GGDWRKISRIPNLE 710 (713)
Q Consensus 693 ~~~~-~~~~~~i~~i~~~~ 710 (713)
|..+ +++|++|+|+|.+.
T Consensus 748 C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 748 CDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCSCC--------------
T ss_pred CCCCccCCCCCCCCccccC
Confidence 4444 88999999999764
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=3e-21 Score=223.18 Aligned_cols=284 Identities=14% Similarity=0.178 Sum_probs=162.2
Q ss_pred CceEEEEEEecCCCC------------------CCcccc--CCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEE
Q 043964 378 KKVCHLMLIIGEGAS------------------FPVSTC--RVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLN 437 (713)
Q Consensus 378 ~~~r~lsl~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~ 437 (713)
.+++.|.+.++.+.. +|..+. ++++|++|.+++|.+. +. .+..|..+++|++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-----~~-iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-----TQ-LPDFLYDLPELQSLN 521 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-----CS-CCGGGGGCSSCCEEE
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-----cc-ChHHHhCCCCCCEEE
Confidence 456667776666554 555555 6777777777766421 12 123356666666666
Q ss_pred eCCCC-cccchhhcccCcchhccC-------cCCccccCCcccccccCc--cccCCCCCcEEeccCccCccccchhhccC
Q 043964 438 IGKWS-ISRWYFILEIPRNIEKLI-------HLKYLNLSCLTSIRKLPE--PLCELYNLEKLDISHCWYLKELPEGIGKL 507 (713)
Q Consensus 438 L~~~~-~~~~~~~~~lp~~i~~L~-------~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 507 (713)
|++|. +++ ..+|..++++. +|++|+|++|. +..+|. .++++++|++|++++|. +..+| .++++
T Consensus 522 Ls~N~~lsg----~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L 594 (876)
T 4ecn_A 522 IACNRGISA----AQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTN 594 (876)
T ss_dssp CTTCTTSCH----HHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTT
T ss_pred CcCCCCccc----ccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCC
Confidence 66665 310 13555555544 66666666666 556666 66666666666666665 44666 56666
Q ss_pred CccceeeccCcccCCcccccCcCCCC-CCcCCceecCCCCcccC---------------CCC----CCccCCcccc--CC
Q 043964 508 INMKHLLNERTDSLGRMPAGIARLTS-LRTFDEFHVSRGKAVDG---------------HKG----CNNVFPNWMM--SL 565 (713)
Q Consensus 508 ~~L~~L~l~~~~~l~~~p~~i~~l~~-L~~L~~~~~~~~~ei~~---------------~~~----~~~~~p~~~~--~l 565 (713)
++|++|++++|.. ..+|..++.+++ |+.|++..+.... +.. ..+ ....+|..+. .+
T Consensus 595 ~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 595 VKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SEESEEECCSSCC-SCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CcceEEECcCCcc-ccchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 6666666666633 366666666666 6666666554321 000 000 0011112222 23
Q ss_pred CCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCccceEeCccccCCc--ccccCcccceeecccccccccccccccc
Q 043964 566 TNPRSLELILCENCNQLPP--LGILPSLEKVIITYMISVKRVGNEFLGIE--IIIAFPKLKSLTISWMLELKEWNYGITR 641 (713)
Q Consensus 566 ~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~ 641 (713)
++|+.|+|++|. +..+|. +..+++|+.|+|+++. +..++....... ....+++|+.|+|+++ .+..++....
T Consensus 673 ~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~- 748 (876)
T 4ecn_A 673 INASTVTLSYNE-IQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR- 748 (876)
T ss_dssp CCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS-
T ss_pred CCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCccchHHhh-
Confidence 366666666663 334554 2356777777776653 333333322110 0112348888888876 3444332210
Q ss_pred ccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 642 TGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 642 ~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
...+++|+.|+|++| .+..+|..+..+++|+.|+++ +++
T Consensus 749 -----~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls-~N~ 787 (876)
T 4ecn_A 749 -----ATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIR-HQR 787 (876)
T ss_dssp -----TTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECC-CCB
T ss_pred -----hccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECC-CCC
Confidence 127899999999998 667799888899999999998 544
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.5e-20 Score=205.39 Aligned_cols=280 Identities=18% Similarity=0.209 Sum_probs=197.0
Q ss_pred CCCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-C
Q 043964 376 LDKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-P 453 (713)
Q Consensus 376 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p 453 (713)
.+.++++|.+.++.+..+ +..+.++++|++|.+++|... ..+++..|..+++|++|+|++|. +..+ |
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-----~~i~~~~~~~l~~L~~L~Ls~n~------l~~~~~ 96 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-----LVIRNNTFRGLSSLIILKLDYNQ------FLQLET 96 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-----CEECTTTTTTCTTCCEEECTTCT------TCEECT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-----ceECcccccccccCCEEeCCCCc------cCccCh
Confidence 468899999998887755 567889999999999998632 12234458889999999999999 5454 7
Q ss_pred cchhccCcCCccccCCcccccc-cCcc--ccCCCCCcEEeccCccCcccc-chh-hccCCccceeeccCcccCCcccccC
Q 043964 454 RNIEKLIHLKYLNLSCLTSIRK-LPEP--LCELYNLEKLDISHCWYLKEL-PEG-IGKLINMKHLLNERTDSLGRMPAGI 528 (713)
Q Consensus 454 ~~i~~L~~Lr~L~L~~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~~p~~i 528 (713)
..++++++|++|+|++|. +.. +|.. ++.+++|++|++++|. +..+ |.. +.++++|++|++++|......|..+
T Consensus 97 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp TTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred hhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 789999999999999998 653 4544 8899999999999998 5555 655 8899999999999986555445444
Q ss_pred cCC----------------------------------CCCCcCCceecCCCCc------------------ccC------
Q 043964 529 ARL----------------------------------TSLRTFDEFHVSRGKA------------------VDG------ 550 (713)
Q Consensus 529 ~~l----------------------------------~~L~~L~~~~~~~~~e------------------i~~------ 550 (713)
..+ ++|++|++..+..... +.+
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 433 5677777666543210 000
Q ss_pred ----------------------------CC-CCCccCCccccCCCCCcEEEeccCCCCCCCC-CCCCCCCcceeeeccCc
Q 043964 551 ----------------------------HK-GCNNVFPNWMMSLTNPRSLELILCENCNQLP-PLGILPSLEKVIITYMI 600 (713)
Q Consensus 551 ----------------------------~~-~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 600 (713)
.. ......|.++..+++|+.|+|++|......| .++.+++|+.|+|+++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 00 0112245666777888888888774433333 27778888888888764
Q ss_pred cceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCC-CCCCCCccE
Q 043964 601 SVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDH-FHQTTTLKE 679 (713)
Q Consensus 601 ~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~-l~~l~~L~~ 679 (713)
+..+.... ...+++|++|+++++. +..+. +.....+++|++|++++| .++.+|.. +..+++|+.
T Consensus 335 -l~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 335 -LGSIDSRM-----FENLDKLEVLDLSYNH-IRALG-------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp -CCEECGGG-----GTTCTTCCEEECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred -cCCcChhH-----hcCcccCCEEECCCCc-ccccC-------hhhccccccccEEECCCC-ccccCCHhHhccCCcccE
Confidence 33332222 2367888888888763 33321 122447899999999998 67777764 478999999
Q ss_pred EEEE
Q 043964 680 LIIR 683 (713)
Q Consensus 680 L~i~ 683 (713)
|+++
T Consensus 400 L~l~ 403 (455)
T 3v47_A 400 IWLH 403 (455)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9997
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=4.1e-21 Score=198.45 Aligned_cols=253 Identities=21% Similarity=0.206 Sum_probs=162.0
Q ss_pred CceEEEEEEecCCC---CCCccccCCCceeEEEecC-CcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC
Q 043964 378 KKVCHLMLIIGEGA---SFPVSTCRVKRMRSLFIGG-NMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP 453 (713)
Q Consensus 378 ~~~r~lsl~~~~~~---~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp 453 (713)
.+++++.+.++.+. .++..+.++++|++|++.+ +.+ .+. .+..|..+++|++|+|++|.+ ...+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-----~~~-~p~~l~~l~~L~~L~Ls~n~l-----~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-----VGP-IPPAIAKLTQLHYLYITHTNV-----SGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-----ESC-CCGGGGGCTTCSEEEEEEECC-----EEECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-----ccc-CChhHhcCCCCCEEECcCCee-----CCcCC
Confidence 56777777777665 3466677777777777774 432 112 223366777777777777773 12567
Q ss_pred cchhccCcCCccccCCccccc-ccCccccCCCCCcEEeccCccCccccchhhccCC-ccceeeccCcccCCcccccCcCC
Q 043964 454 RNIEKLIHLKYLNLSCLTSIR-KLPEPLCELYNLEKLDISHCWYLKELPEGIGKLI-NMKHLLNERTDSLGRMPAGIARL 531 (713)
Q Consensus 454 ~~i~~L~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~l~~~p~~i~~l 531 (713)
..+.++++|++|++++|. +. .+|..+..+++|++|++++|.....+|..+..++ +|++|++++|.....+|..++.+
T Consensus 119 ~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred HHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 777777777777777777 44 6777777777777777777773336777777776 77777777776555667777777
Q ss_pred CCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccC
Q 043964 532 TSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLG 611 (713)
Q Consensus 532 ~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 611 (713)
+ |+.|++..+... ...|..+..+++|+.|+|++|.....+|.+..+++|+.|+|+++.-...++..
T Consensus 198 ~-L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--- 263 (313)
T 1ogq_A 198 N-LAFVDLSRNMLE----------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG--- 263 (313)
T ss_dssp C-CSEEECCSSEEE----------ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG---
T ss_pred c-ccEEECcCCccc----------CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH---
Confidence 6 777777665432 22556666777777777777755445555667777777777765422122221
Q ss_pred CcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCC
Q 043964 612 IEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALP 668 (713)
Q Consensus 612 ~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp 668 (713)
...+++|+.|+++++.-...++.. ..+++|+.|++.+++.+...|
T Consensus 264 ---l~~l~~L~~L~Ls~N~l~~~ip~~---------~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 264 ---LTQLKFLHSLNVSFNNLCGEIPQG---------GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ---GGGCTTCCEEECCSSEEEEECCCS---------TTGGGSCGGGTCSSSEEESTT
T ss_pred ---HhcCcCCCEEECcCCcccccCCCC---------ccccccChHHhcCCCCccCCC
Confidence 225677777777765322222221 256777777777776665544
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=4.5e-21 Score=217.81 Aligned_cols=274 Identities=16% Similarity=0.214 Sum_probs=178.0
Q ss_pred CCceEEEEEEecCC-CCCCccccCCCceeEEEecCCc-CCCcchhh-hHHHHHHccC------CceeEEEeCCCCcccch
Q 043964 377 DKKVCHLMLIIGEG-ASFPVSTCRVKRMRSLFIGGNM-LDNSSLNG-KMLKELFEKL------TSLRVLNIGKWSISRWY 447 (713)
Q Consensus 377 ~~~~r~lsl~~~~~-~~~~~~~~~~~~Lr~L~l~~~~-~~~~~~~~-~~~~~~~~~~------~~Lr~L~L~~~~~~~~~ 447 (713)
..+++.|.+.++.. ..+|..+.++++|++|++++|. + .+ .+ +..+..+ ++|++|++++|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-----~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~----- 316 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-----SGEQL-KDDWQALADAPVGEKIQIIYIGYNN----- 316 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-----CHHHH-HHHHHHHHHSGGGGTCCEEECCSSC-----
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-----ccccc-hHHHHhhhccccCCCCCEEECCCCc-----
Confidence 34566666666543 2345566667777777777664 2 22 22 2223333 677777777777
Q ss_pred hhcccCc--chhccCcCCccccCCccccc-ccCccccCCCCCcEEeccCccCccccchhhccCCc-cceeeccCcccCCc
Q 043964 448 FILEIPR--NIEKLIHLKYLNLSCLTSIR-KLPEPLCELYNLEKLDISHCWYLKELPEGIGKLIN-MKHLLNERTDSLGR 523 (713)
Q Consensus 448 ~~~~lp~--~i~~L~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~-L~~L~l~~~~~l~~ 523 (713)
+..+|. .++++++|++|++++|. +. .+| .++.+++|++|++++|. +..+|..+..+++ |++|++++|. +..
T Consensus 317 -l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~ 391 (636)
T 4eco_A 317 -LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKY 391 (636)
T ss_dssp -CSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSS
T ss_pred -CCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-Ccc
Confidence 556676 67777777777777777 55 777 67777777777777776 5677777777777 7777777774 346
Q ss_pred ccccCcCCC--CCCcCCceecCCCCcccCCCCCCccCCcccc-------CCCCCcEEEeccCCCCCCCCC--CCCCCCcc
Q 043964 524 MPAGIARLT--SLRTFDEFHVSRGKAVDGHKGCNNVFPNWMM-------SLTNPRSLELILCENCNQLPP--LGILPSLE 592 (713)
Q Consensus 524 ~p~~i~~l~--~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~-------~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~ 592 (713)
+|..++.++ +|+.|++..+... ...|.++. .+++|+.|+|++|. +..+|. +..+++|+
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~----------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIG----------SVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLS 460 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTT----------TTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCS
T ss_pred cchhhhhcccCccCEEECcCCcCC----------CcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCC
Confidence 676665544 6777777665533 22455555 66788888888884 446666 45588888
Q ss_pred eeeeccCccceEeCccccCCc--ccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCC
Q 043964 593 KVIITYMISVKRVGNEFLGIE--IIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDH 670 (713)
Q Consensus 593 ~L~L~~~~~l~~~~~~~~~~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~ 670 (713)
.|+|+++. +..++....... ....+++|+.|+++++. +..++.... ...+++|+.|++++| .+..+|..
T Consensus 461 ~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~------~~~l~~L~~L~Ls~N-~l~~ip~~ 531 (636)
T 4eco_A 461 SINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFR------ATTLPYLVGIDLSYN-SFSKFPTQ 531 (636)
T ss_dssp EEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGS------TTTCTTCCEEECCSS-CCSSCCCG
T ss_pred EEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhh------hccCCCcCEEECCCC-CCCCcChh
Confidence 88888764 334443322110 01123389999998753 444432211 127899999999998 56679998
Q ss_pred CCCCCCccEEEEEcCCc
Q 043964 671 FHQTTTLKELIIRSNCG 687 (713)
Q Consensus 671 l~~l~~L~~L~i~~~C~ 687 (713)
+..+++|+.|+++ ++.
T Consensus 532 ~~~l~~L~~L~Ls-~N~ 547 (636)
T 4eco_A 532 PLNSSTLKGFGIR-NQR 547 (636)
T ss_dssp GGGCSSCCEEECC-SCB
T ss_pred hhcCCCCCEEECC-CCc
Confidence 9999999999997 543
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=204.77 Aligned_cols=281 Identities=18% Similarity=0.202 Sum_probs=181.8
Q ss_pred CCCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc
Q 043964 376 LDKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR 454 (713)
Q Consensus 376 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 454 (713)
.+..++.|.+.++.+..+ +..+.++++|++|.+++|.+. ...+..|..+++|++|+|++|. +..+|.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~ 97 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGLRSNR------LKLIPL 97 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSC------CCSCCT
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEECCCCc------CCccCc
Confidence 467788888888877654 356778899999999888642 2223447788889999998888 666665
Q ss_pred -chhccCcCCccccCCccccccc-CccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCccc-ccCcCC
Q 043964 455 -NIEKLIHLKYLNLSCLTSIRKL-PEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMP-AGIARL 531 (713)
Q Consensus 455 -~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l 531 (713)
.+.++++|++|+|++|. +..+ |..+..+++|++|++++|......|..+..+++|++|++++|.. ..+| ..++.+
T Consensus 98 ~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l 175 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHL 175 (477)
T ss_dssp TSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTC
T ss_pred ccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhccc
Confidence 46788888888888888 5544 56788888888888888873333345678888888888888843 3444 456777
Q ss_pred CCCCcCCceecCCCCc----ccC----------CCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceee
Q 043964 532 TSLRTFDEFHVSRGKA----VDG----------HKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVI 595 (713)
Q Consensus 532 ~~L~~L~~~~~~~~~e----i~~----------~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~ 595 (713)
++|+.|++..+..... +.. .......+|.......+|+.|+|++| .+..+|. +..+++|+.|+
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeE
Confidence 7777777776553320 000 00001122333333345556666555 3344542 56667777777
Q ss_pred eccCccceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCC-CCCCC
Q 043964 596 ITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPD-HFHQT 674 (713)
Q Consensus 596 L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~l~~l 674 (713)
|+++. +..++... ...+++|+.|.++++. +..+. +.....+++|+.|++++| .++.+|. .+..+
T Consensus 255 Ls~n~-l~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 319 (477)
T 2id5_A 255 LSYNP-ISTIEGSM-----LHELLRLQEIQLVGGQ-LAVVE-------PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSV 319 (477)
T ss_dssp CCSSC-CCEECTTS-----CTTCTTCCEEECCSSC-CSEEC-------TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCG
T ss_pred CCCCc-CCccChhh-----ccccccCCEEECCCCc-cceEC-------HHHhcCcccCCEEECCCC-cCceeCHhHcCCC
Confidence 76654 33333222 2256778888877652 33221 122447889999999998 6777775 35778
Q ss_pred CCccEEEEEcCCc
Q 043964 675 TTLKELIIRSNCG 687 (713)
Q Consensus 675 ~~L~~L~i~~~C~ 687 (713)
++|+.|+++ +++
T Consensus 320 ~~L~~L~l~-~N~ 331 (477)
T 2id5_A 320 GNLETLILD-SNP 331 (477)
T ss_dssp GGCCEEECC-SSC
T ss_pred cccCEEEcc-CCC
Confidence 999999998 444
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=2.4e-20 Score=199.29 Aligned_cols=274 Identities=15% Similarity=0.151 Sum_probs=175.6
Q ss_pred CCceEEEEEEecCCCCCCcc-ccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC-c
Q 043964 377 DKKVCHLMLIIGEGASFPVS-TCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-R 454 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~ 454 (713)
..+++.+.+.++.+..++.. +..+++|++|.+.++.+. ..++..|..+++|++|+|++|. +..+| .
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNA------IRYLPPH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSC------CCCCCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCC------CCcCCHH
Confidence 35677788877776665543 466888888888887642 2233347788888888888888 55554 4
Q ss_pred chhccCcCCccccCCcccccccCcc-ccCCCCCcEEeccCccCccccc-hhhccCCccceeeccCcccCCcccccCcCCC
Q 043964 455 NIEKLIHLKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKELP-EGIGKLINMKHLLNERTDSLGRMPAGIARLT 532 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~ 532 (713)
.++.+++|++|++++|. +..+|.. +..+++|++|++++|. +..++ ..+..+++|++|++++|.. ..++ ++.++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--~~~l~ 186 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIP 186 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCC-SBCC--GGGCT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcC-Cccc--ccccc
Confidence 57888888888888887 7888866 4788888888888887 55554 4578888888888888743 3332 33445
Q ss_pred CCCcCCceecCCCC--------cccCCC--------------------CCCccCCccccCCCCCcEEEeccCCCCCCCCC
Q 043964 533 SLRTFDEFHVSRGK--------AVDGHK--------------------GCNNVFPNWMMSLTNPRSLELILCENCNQLPP 584 (713)
Q Consensus 533 ~L~~L~~~~~~~~~--------ei~~~~--------------------~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 584 (713)
+|+.|++..+.... ++.-.. +..-.-+.++..+++|+.|+|++|......|.
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChh
Confidence 55544443332111 000000 00001124556677777777777743333233
Q ss_pred -CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccccccccccccccccccccccccccccccccccccc
Q 043964 585 -LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPK 663 (713)
Q Consensus 585 -l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 663 (713)
++.+++|+.|+|+++. +..++... ..+|+|+.|+++++ .+..++.. ...+++|+.|++++| .
T Consensus 267 ~~~~l~~L~~L~L~~n~-l~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~--------~~~l~~L~~L~L~~N-~ 329 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNR-LVALNLYG------QPIPTLKVLDLSHN-HLLHVERN--------QPQFDRLENLYLDHN-S 329 (390)
T ss_dssp GGTTCSSCCEEECCSSC-CCEEECSS------SCCTTCCEEECCSS-CCCCCGGG--------HHHHTTCSEEECCSS-C
T ss_pred HccccccCCEEECCCCc-CcccCccc------CCCCCCCEEECCCC-cceecCcc--------ccccCcCCEEECCCC-c
Confidence 6677777777777653 33332211 25788888888876 34444332 237889999999988 4
Q ss_pred CCCCCCCCCCCCCccEEEEEcCCc
Q 043964 664 LKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 664 L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
+..+| +..+++|+.|+++ +++
T Consensus 330 i~~~~--~~~~~~L~~L~l~-~N~ 350 (390)
T 3o6n_A 330 IVTLK--LSTHHTLKNLTLS-HND 350 (390)
T ss_dssp CCCCC--CCTTCCCSEEECC-SSC
T ss_pred cceeC--chhhccCCEEEcC-CCC
Confidence 66676 4678899999998 555
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=7.2e-20 Score=211.69 Aligned_cols=284 Identities=15% Similarity=0.195 Sum_probs=190.5
Q ss_pred CCceEEEEEEecCC-CCCCccccCCCceeEEEecCCc-CCCcchhh-hHHHHHHc-------cCCceeEEEeCCCCcccc
Q 043964 377 DKKVCHLMLIIGEG-ASFPVSTCRVKRMRSLFIGGNM-LDNSSLNG-KMLKELFE-------KLTSLRVLNIGKWSISRW 446 (713)
Q Consensus 377 ~~~~r~lsl~~~~~-~~~~~~~~~~~~Lr~L~l~~~~-~~~~~~~~-~~~~~~~~-------~~~~Lr~L~L~~~~~~~~ 446 (713)
..+++.|.+..+.. ..+|..+.++++|+.|.+++|. + .+ .++. .+. .+++|++|+|++|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-----sg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~---- 559 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-----SAAQLKA-DWTRLADDEDTGPKIQIFYMGYNN---- 559 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-----CHHHHHH-HHHHHHHCTTTTTTCCEEECCSSC----
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-----ccccchH-HHHhhhhcccccCCccEEEeeCCc----
Confidence 56789999988864 4567888999999999999985 3 23 3232 233 45599999999999
Q ss_pred hhhcccCc--chhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCc-cceeeccCcccCCc
Q 043964 447 YFILEIPR--NIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLIN-MKHLLNERTDSLGR 523 (713)
Q Consensus 447 ~~~~~lp~--~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~-L~~L~l~~~~~l~~ 523 (713)
+..+|. .++++++|++|+|++|. +..+| .++.+++|++|++++|. +..+|..+..+++ |++|++++|. +..
T Consensus 560 --L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~ 633 (876)
T 4ecn_A 560 --LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKY 633 (876)
T ss_dssp --CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCS
T ss_pred --CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCc
Confidence 668998 89999999999999999 77999 89999999999999998 7799999999999 9999999995 558
Q ss_pred ccccCcCCCC--CCcCCceecCCCCcccC------------------CCCCCccCCcccc-CCCCCcEEEeccCCCCCCC
Q 043964 524 MPAGIARLTS--LRTFDEFHVSRGKAVDG------------------HKGCNNVFPNWMM-SLTNPRSLELILCENCNQL 582 (713)
Q Consensus 524 ~p~~i~~l~~--L~~L~~~~~~~~~ei~~------------------~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l 582 (713)
+|..++.++. |+.|++..+.....+.. ..+....+|.++. .+++|+.|+|++|. +..+
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~i 712 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSI 712 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCcc
Confidence 8887776654 88888877654321110 1122234666554 67788888888773 3355
Q ss_pred CC-C--------CCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccc-------------
Q 043964 583 PP-L--------GILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGIT------------- 640 (713)
Q Consensus 583 ~~-l--------~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~------------- 640 (713)
|. + .+|++|+.|+|+++. +..++..+.. ..+++|+.|+|+++. +..++....
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~----~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRA----TTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGST----TTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCC
T ss_pred ChHHhccccccccccCCccEEECCCCC-CccchHHhhh----ccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCC
Confidence 54 2 123477777777653 3333332210 145666666665532 222221111
Q ss_pred ---------cccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 641 ---------RTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 641 ---------~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
...|.....+++|+.|+|++| .+..+|..+. ++|+.|+|+ +|+
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs-~N~ 838 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIA-DNP 838 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECC-SCT
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECC-CCC
Confidence 011222335566666666666 3355665443 466666666 554
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=5e-20 Score=208.95 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=116.0
Q ss_pred cCCCceEEEEEEecCCCCCCc-cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-
Q 043964 375 SLDKKVCHLMLIIGEGASFPV-STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI- 452 (713)
Q Consensus 375 ~~~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l- 452 (713)
..+..++++.+.++.+..++. .+.++++|++|++++|.+. .+.+..|..+++|++|+|++|. +..+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~i~~~~~~~l~~L~~L~Ls~n~------l~~~~ 96 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE------TIEDKAWHGLHHLSNLILTGNP------IQSFS 96 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCC------CCCCC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc------ccCHHHhhchhhcCEeECCCCc------ccccC
Confidence 346889999998887765543 7888999999999998642 2234457899999999999999 5555
Q ss_pred CcchhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCcc--ccchhhccCCccceeeccCcccCCcccccCc
Q 043964 453 PRNIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLK--ELPEGIGKLINMKHLLNERTDSLGRMPAGIA 529 (713)
Q Consensus 453 p~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~ 529 (713)
|..++++++|++|++++|. +..+| ..++++++|++|++++|. +. .+|..++++++|++|++++|......|..++
T Consensus 97 p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred hhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 7889999999999999998 77776 679999999999999998 54 5789999999999999999854443344444
Q ss_pred CCCCC
Q 043964 530 RLTSL 534 (713)
Q Consensus 530 ~l~~L 534 (713)
.+++|
T Consensus 175 ~l~~L 179 (606)
T 3vq2_A 175 FLREN 179 (606)
T ss_dssp HHHHC
T ss_pred hhhcc
Confidence 44443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=4.3e-20 Score=209.74 Aligned_cols=270 Identities=15% Similarity=0.200 Sum_probs=182.1
Q ss_pred CCceEEEEEEecC-CC--CCCccccCC------CceeEEEecCCcCCCcchhhhHHH-HHHccCCceeEEEeCCCCcccc
Q 043964 377 DKKVCHLMLIIGE-GA--SFPVSTCRV------KRMRSLFIGGNMLDNSSLNGKMLK-ELFEKLTSLRVLNIGKWSISRW 446 (713)
Q Consensus 377 ~~~~r~lsl~~~~-~~--~~~~~~~~~------~~Lr~L~l~~~~~~~~~~~~~~~~-~~~~~~~~Lr~L~L~~~~~~~~ 446 (713)
.++++.|.+..+. +. .+|..+..+ ++|+.|.+.+|.+. .++. ..+..+++|++|++++|.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~------~ip~~~~l~~l~~L~~L~L~~N~---- 341 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK------TFPVETSLQKMKKLGMLECLYNQ---- 341 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS------SCCCHHHHTTCTTCCEEECCSCC----
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC------ccCchhhhccCCCCCEEeCcCCc----
Confidence 3467777777765 44 234444444 78888888887643 2222 147778888888888888
Q ss_pred hhhc-ccCcchhccCcCCccccCCcccccccCccccCCCC-CcEEeccCccCccccchhhccCC--ccceeeccCcccCC
Q 043964 447 YFIL-EIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYN-LEKLDISHCWYLKELPEGIGKLI--NMKHLLNERTDSLG 522 (713)
Q Consensus 447 ~~~~-~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~-L~~L~l~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~ 522 (713)
+. .+| .++.+++|++|++++|. +..+|..++.+++ |++|++++|. +..+|..+..+. +|++|++++|....
T Consensus 342 --l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 342 --LEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp --CEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred --Cccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCC
Confidence 44 677 78888888888888887 7788888888888 8888888887 667887766654 78888888886666
Q ss_pred cccccCc-------CCCCCCcCCceecCCCCcccCCCCCCccCCcccc-CCCCCcEEEeccCCCCCCCCC--CC------
Q 043964 523 RMPAGIA-------RLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMM-SLTNPRSLELILCENCNQLPP--LG------ 586 (713)
Q Consensus 523 ~~p~~i~-------~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~--l~------ 586 (713)
..|..++ .+++|+.|++..+... .+|..+. .+++|+.|+|++|.. ..+|. +.
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-----------~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS-----------KFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENF 484 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-----------SCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEEC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccC-----------cCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccc
Confidence 6777676 6778888887776543 2565543 578888888888743 35554 21
Q ss_pred -CCCCcceeeeccCccceEeCccccCCcccccCcccceeecccccccccccccccccccccccccccccccccc------
Q 043964 587 -ILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTID------ 659 (713)
Q Consensus 587 -~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~------ 659 (713)
++++|+.|+|+++. +..++..+.. ..+++|+.|+++++. +..++.. ...+++|+.|+++
T Consensus 485 ~~l~~L~~L~Ls~N~-l~~lp~~~~~----~~l~~L~~L~Ls~N~-l~~ip~~--------~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 485 KNTYLLTSIDLRFNK-LTKLSDDFRA----TTLPYLVGIDLSYNS-FSKFPTQ--------PLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp TTGGGCCEEECCSSC-CCBCCGGGST----TTCTTCCEEECCSSC-CSSCCCG--------GGGCSSCCEEECCSCBCTT
T ss_pred cccCCccEEECcCCc-CCccChhhhh----ccCCCcCEEECCCCC-CCCcChh--------hhcCCCCCEEECCCCcccc
Confidence 22378888887754 3333332210 157788888887753 3333333 3367888888884
Q ss_pred ccccCCCCCCCCCCCCCccEEEEEcCCch
Q 043964 660 SCPKLKALPDHFHQTTTLKELIIRSNCGL 688 (713)
Q Consensus 660 ~c~~L~~lp~~l~~l~~L~~L~i~~~C~~ 688 (713)
+|.....+|..+..+++|++|+++ +|.-
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls-~N~l 578 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIG-SNDI 578 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECC-SSCC
T ss_pred cCcccccChHHHhcCCCCCEEECC-CCcC
Confidence 344455778777778888888887 6543
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.7e-21 Score=198.77 Aligned_cols=251 Identities=18% Similarity=0.164 Sum_probs=196.8
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCC-CCcccchhhcccCcchhccCcCCccccCCccccc-ccCc
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGK-WSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIR-KLPE 478 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~-~lp~ 478 (713)
.+++.|++.++.+.... . .+..+..+++|++|+|++ +.+ ...+|..++++++|++|+|++|. +. .+|.
T Consensus 50 ~~l~~L~L~~~~l~~~~---~-~~~~l~~l~~L~~L~L~~~n~l-----~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY---P-IPSSLANLPYLNFLYIGGINNL-----VGPIPPAIAKLTQLHYLYITHTN-VSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSCE---E-CCGGGGGCTTCSEEEEEEETTE-----ESCCCGGGGGCTTCSEEEEEEEC-CEEECCG
T ss_pred ceEEEEECCCCCccCCc---c-cChhHhCCCCCCeeeCCCCCcc-----cccCChhHhcCCCCCEEECcCCe-eCCcCCH
Confidence 58999999998753200 2 233488999999999995 773 34789999999999999999999 65 8999
Q ss_pred cccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCC-CCCcCCceecCCCCcccCCCCCCcc
Q 043964 479 PLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLT-SLRTFDEFHVSRGKAVDGHKGCNNV 557 (713)
Q Consensus 479 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~-~L~~L~~~~~~~~~ei~~~~~~~~~ 557 (713)
.++++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|++..+... ..
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~----------~~ 189 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT----------GK 189 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE----------EE
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee----------cc
Confidence 999999999999999984448999999999999999999976668899999998 9999998876533 24
Q ss_pred CCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccc
Q 043964 558 FPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWN 636 (713)
Q Consensus 558 ~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 636 (713)
.|..+..++ |+.|+|++|......|. ++.+++|+.|+|+++.- ...... ...+++|++|+++++.-...++
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~------~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AFDLGK------VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-CCBGGG------CCCCTTCCEEECCSSCCEECCC
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce-eeecCc------ccccCCCCEEECcCCcccCcCC
Confidence 788888887 99999999954444444 88999999999997642 111111 2367899999999864322333
Q ss_pred cccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCchh
Q 043964 637 YGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCGLL 689 (713)
Q Consensus 637 ~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~~l 689 (713)
.. ...+++|+.|++++|.....+|.. ..+++|+.+++. +.+.+
T Consensus 262 ~~--------l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~-~N~~l 304 (313)
T 1ogq_A 262 QG--------LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA-NNKCL 304 (313)
T ss_dssp GG--------GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC-SSSEE
T ss_pred hH--------HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhc-CCCCc
Confidence 22 448899999999999655578875 778999999998 66644
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=8.3e-20 Score=191.91 Aligned_cols=258 Identities=20% Similarity=0.266 Sum_probs=187.2
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
.++++.+.+.++.+..++. +..+++|++|.+.+|.+.. ++ .+..+++|++|++++|. +..+|. +
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-------~~-~~~~l~~L~~L~l~~n~------i~~~~~-~ 128 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-------IS-ALQNLTNLRELYLNEDN------ISDISP-L 128 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-------CG-GGTTCTTCSEEECTTSC------CCCCGG-G
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-------ch-HHcCCCcCCEEECcCCc------ccCchh-h
Confidence 5678899998887776554 8889999999999986432 12 27889999999999998 556665 8
Q ss_pred hccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCc
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRT 536 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 536 (713)
..+++|++|++++|..+..++. +..+++|++|++++|. +..++. +..+++|++|++++|. +..++. +..+++|+.
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~ 203 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHY 203 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCE
T ss_pred ccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCccce
Confidence 8899999999999974665554 8899999999999987 677766 8899999999999984 445554 778888888
Q ss_pred CCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCcccc
Q 043964 537 FDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIII 616 (713)
Q Consensus 537 L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 616 (713)
|++..+.... .+. +..+++|+.|++++| .+..++.+..+++|+.|+++++. +..+ ....
T Consensus 204 L~l~~n~l~~-----------~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~-------~~~~ 262 (347)
T 4fmz_A 204 FTAYVNQITD-----------ITP-VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQ-ISDI-------NAVK 262 (347)
T ss_dssp EECCSSCCCC-----------CGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCC-------GGGT
T ss_pred eecccCCCCC-----------Cch-hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCc-cCCC-------hhHh
Confidence 8887765432 222 567788888888887 44555557788888888888753 2222 1233
Q ss_pred cCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 617 AFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 617 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
.+++|+.|+++++ .+..++. ...+++|+.|++++|+.....|..+..+++|+.|+++ +|+
T Consensus 263 ~l~~L~~L~l~~n-~l~~~~~---------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~-~n~ 322 (347)
T 4fmz_A 263 DLTKLKMLNVGSN-QISDISV---------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS-QNH 322 (347)
T ss_dssp TCTTCCEEECCSS-CCCCCGG---------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC-SSS
T ss_pred cCCCcCEEEccCC-ccCCChh---------hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc-CCc
Confidence 6778888888775 3444321 2367778888888774433444555667788888887 665
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=7.7e-20 Score=192.15 Aligned_cols=255 Identities=18% Similarity=0.266 Sum_probs=130.7
Q ss_pred CceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchh
Q 043964 378 KKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIE 457 (713)
Q Consensus 378 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 457 (713)
++++++.+.++....+ +.+..+++|++|.+++|.+.. +++ +..+++|++|++++|. +..+| .+.
T Consensus 44 ~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~------~~~--~~~l~~L~~L~L~~n~------i~~~~-~~~ 107 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITD------ISP--LSNLVKLTNLYIGTNK------ITDIS-ALQ 107 (347)
T ss_dssp TTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSC------CCCCG-GGT
T ss_pred ccccEEEEeCCccccc-hhhhhcCCccEEEccCCcccc------chh--hhcCCcCCEEEccCCc------ccCch-HHc
Confidence 3455555555544442 234556666666666654321 111 5556666666666665 33333 355
Q ss_pred ccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcC
Q 043964 458 KLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTF 537 (713)
Q Consensus 458 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 537 (713)
.+++|++|++++|. +..+|. +..+++|++|++++|..+..++. +..+++|++|++++|. +..++. ++.+++|++|
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSL 182 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEE
Confidence 66666666666665 555554 55666666666666653443333 5666666666666653 222322 5556666666
Q ss_pred CceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCccccc
Q 043964 538 DEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIIIA 617 (713)
Q Consensus 538 ~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 617 (713)
++..+.... ++. +..+++|+.|++++| .+..++.+..+++|+.|+++++. +..++. ...
T Consensus 183 ~l~~n~l~~-----------~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~-------~~~ 241 (347)
T 4fmz_A 183 SLNYNQIED-----------ISP-LASLTSLHYFTAYVN-QITDITPVANMTRLNSLKIGNNK-ITDLSP-------LAN 241 (347)
T ss_dssp ECTTSCCCC-----------CGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG-------GTT
T ss_pred EccCCcccc-----------ccc-ccCCCccceeecccC-CCCCCchhhcCCcCCEEEccCCc-cCCCcc-------hhc
Confidence 655543321 222 445566666666655 33333335556666666665543 111111 224
Q ss_pred CcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 618 FPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 618 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
+++|+.|+++++ .+..+. ....+++|+.|++++| .+..+|. +..+++|+.|+++ +|+
T Consensus 242 l~~L~~L~l~~n-~l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~-~n~ 298 (347)
T 4fmz_A 242 LSQLTWLEIGTN-QISDIN---------AVKDLTKLKMLNVGSN-QISDISV-LNNLSQLNSLFLN-NNQ 298 (347)
T ss_dssp CTTCCEEECCSS-CCCCCG---------GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECC-SSC
T ss_pred CCCCCEEECCCC-ccCCCh---------hHhcCCCcCEEEccCC-ccCCChh-hcCCCCCCEEECc-CCc
Confidence 556666666554 222221 1225566666666665 4444442 4455666666666 543
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=2.6e-20 Score=216.52 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=107.9
Q ss_pred CCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCc
Q 043964 430 LTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLIN 509 (713)
Q Consensus 430 ~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 509 (713)
+++|++|++++|.+ ...+|..++++++|++|++++|.....+|..++.+++|++|++++|.....+|..+..+++
T Consensus 393 ~~~L~~L~L~~n~l-----~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 393 KNTLQELYLQNNGF-----TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TCCCCEEECCSSEE-----EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred cCCccEEECCCCcc-----ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 44555666655552 1245666777777777777777633366777777777777777777644467777777777
Q ss_pred cceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCC
Q 043964 510 MKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGIL 588 (713)
Q Consensus 510 L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l 588 (713)
|+.|++++|.....+|..++.+++|+.|++..+... ..+|.|+..+++|+.|+|++|.....+|. ++.+
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~----------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT----------GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC----------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC----------CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 777777777665566777777777777777666543 34778888888888888888865556665 7778
Q ss_pred CCcceeeeccCc
Q 043964 589 PSLEKVIITYMI 600 (713)
Q Consensus 589 ~~L~~L~L~~~~ 600 (713)
++|+.|+++++.
T Consensus 538 ~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 538 RSLIWLDLNTNL 549 (768)
T ss_dssp TTCCEEECCSSE
T ss_pred CCCCEEECCCCc
Confidence 888888887664
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=7.5e-20 Score=195.50 Aligned_cols=258 Identities=17% Similarity=0.158 Sum_probs=180.6
Q ss_pred cCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC-cchhccCcCCccccCCccccccc
Q 043964 398 CRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-RNIEKLIHLKYLNLSCLTSIRKL 476 (713)
Q Consensus 398 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~l 476 (713)
..+++++.|.+.++.+ ..+++.+|..+++|++|+|+++. +..++ ..+..+++|++|+|++|. +..+
T Consensus 42 ~~l~~l~~l~l~~~~l------~~l~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 108 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNA-IRYL 108 (390)
T ss_dssp GGGCCCSEEEEESCEE------SEECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred cccCCceEEEecCCch------hhCChhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECCCCC-CCcC
Confidence 3568999999998863 34456668899999999999999 66665 489999999999999999 7776
Q ss_pred C-ccccCCCCCcEEeccCccCccccchhh-ccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCc----ccC
Q 043964 477 P-EPLCELYNLEKLDISHCWYLKELPEGI-GKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKA----VDG 550 (713)
Q Consensus 477 p-~~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~e----i~~ 550 (713)
| ..++.+++|++|++++|. +..+|..+ .++++|++|++++|......|..++.+++|++|++..+..... +..
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 187 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTT
T ss_pred CHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccc
Confidence 5 568999999999999998 88899874 8999999999999965555566799999999999988765420 000
Q ss_pred ------CCCCCc--cCCcccc---------------CCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCc
Q 043964 551 ------HKGCNN--VFPNWMM---------------SLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGN 607 (713)
Q Consensus 551 ------~~~~~~--~~p~~~~---------------~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 607 (713)
..+... ..|..+. .+++|+.|++++| .+...+.++.+++|+.|+++++. +..+..
T Consensus 188 L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~ 265 (390)
T 3o6n_A 188 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMY 265 (390)
T ss_dssp CSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEES
T ss_pred cceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCC-CCcccHHHcCCCCccEEECCCCc-CCCcCh
Confidence 000000 0010000 1235555666555 23344556677777777777654 222211
Q ss_pred cccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 608 EFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 608 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
. ....+++|+.|+++++ .+..++... ..+|+|+.|++++| .+..+|..+..+++|+.|+++ +|+
T Consensus 266 ~-----~~~~l~~L~~L~L~~n-~l~~~~~~~--------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~-~N~ 329 (390)
T 3o6n_A 266 H-----PFVKMQRLERLYISNN-RLVALNLYG--------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLD-HNS 329 (390)
T ss_dssp G-----GGTTCSSCCEEECCSS-CCCEEECSS--------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECC-SSC
T ss_pred h-----HccccccCCEEECCCC-cCcccCccc--------CCCCCCCEEECCCC-cceecCccccccCcCCEEECC-CCc
Confidence 1 1225678888888764 344443332 36788888888888 667777767777888888888 654
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=5.9e-20 Score=207.34 Aligned_cols=273 Identities=16% Similarity=0.162 Sum_probs=168.4
Q ss_pred CceEEEEEEecCCCCCCcc-ccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc-c
Q 043964 378 KKVCHLMLIIGEGASFPVS-TCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR-N 455 (713)
Q Consensus 378 ~~~r~lsl~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~ 455 (713)
.+.+.+.+.++.+..++.. +..+++|++|++.+|.+. ..++..|..+++|++|+|++|. +..+|+ .
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~ 118 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNA------IRYLPPHV 118 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSC------CCCCCTTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC------CCChHHhcCCCCCCEEECCCCc------CCCCCHHH
Confidence 4456666665555544433 456777888887777532 2223336777778888887777 445543 4
Q ss_pred hhccCcCCccccCCcccccccCcc-ccCCCCCcEEeccCccCccccc-hhhccCCccceeeccCcccCCcccccCcCCCC
Q 043964 456 IEKLIHLKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKELP-EGIGKLINMKHLLNERTDSLGRMPAGIARLTS 533 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~ 533 (713)
++++++|++|+|++|. +..+|.. ++.+++|++|++++|. +..+| ..++.+++|++|++++|. +..++ ++.+++
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~ 193 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPS 193 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTT
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhh
Confidence 5777778888887777 7777755 4777788888887776 44443 457777778888877773 33332 233444
Q ss_pred CCcCCceecCCCC--------c----------ccC----------CCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-
Q 043964 534 LRTFDEFHVSRGK--------A----------VDG----------HKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP- 584 (713)
Q Consensus 534 L~~L~~~~~~~~~--------e----------i~~----------~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~- 584 (713)
|+.|++..+.... . +.+ -.+..-.-|.++..+++|+.|+|++|......|.
T Consensus 194 L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred hhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHH
Confidence 4444433322111 0 000 0000111245667788888888888754333343
Q ss_pred CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccC
Q 043964 585 LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKL 664 (713)
Q Consensus 585 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L 664 (713)
++.+++|+.|+|+++. +..++... ..+|+|+.|+++++. +..++.. ...+++|+.|++++| .+
T Consensus 274 ~~~l~~L~~L~Ls~N~-l~~l~~~~------~~l~~L~~L~Ls~N~-l~~i~~~--------~~~l~~L~~L~L~~N-~l 336 (597)
T 3oja_B 274 FVKMQRLERLYISNNR-LVALNLYG------QPIPTLKVLDLSHNH-LLHVERN--------QPQFDRLENLYLDHN-SI 336 (597)
T ss_dssp GTTCSSCCEEECTTSC-CCEEECSS------SCCTTCCEEECCSSC-CCCCGGG--------HHHHTTCSEEECCSS-CC
T ss_pred hcCccCCCEEECCCCC-CCCCCccc------ccCCCCcEEECCCCC-CCccCcc--------cccCCCCCEEECCCC-CC
Confidence 7778888888888754 33332221 257889999888763 4444332 337899999999998 56
Q ss_pred CCCCCCCCCCCCccEEEEEcCCc
Q 043964 665 KALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 665 ~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
..+| +..+++|+.|+++ +++
T Consensus 337 ~~~~--~~~~~~L~~L~l~-~N~ 356 (597)
T 3oja_B 337 VTLK--LSTHHTLKNLTLS-HND 356 (597)
T ss_dssp CCCC--CCTTCCCSEEECC-SSC
T ss_pred CCcC--hhhcCCCCEEEee-CCC
Confidence 6666 4678999999998 655
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=9e-20 Score=200.44 Aligned_cols=258 Identities=19% Similarity=0.172 Sum_probs=164.8
Q ss_pred CCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcc-cCc
Q 043964 377 DKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILE-IPR 454 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~-lp~ 454 (713)
.++++.|.+..+.+..+ +..+.++++|++|.+.+|.+. .+++..|..+++|++|+|++|. +.. .|.
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~ 122 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK------LIPLGVFTGLSNLTKLDISENK------IVILLDY 122 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------SCCTTSSTTCTTCCEEECTTSC------CCEECTT
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC------ccCcccccCCCCCCEEECCCCc------cccCChh
Confidence 34566777766655543 456667777777777777532 2223335667777777777777 333 345
Q ss_pred chhccCcCCccccCCccccccc-CccccCCCCCcEEeccCccCccccch-hhccCCccceeeccCcccCCcccccCcCCC
Q 043964 455 NIEKLIHLKYLNLSCLTSIRKL-PEPLCELYNLEKLDISHCWYLKELPE-GIGKLINMKHLLNERTDSLGRMPAGIARLT 532 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~ 532 (713)
.+..+++|++|++++|. +..+ |..+..+++|++|++++|. +..+|. .+.++++|+.|++++|......+..+..++
T Consensus 123 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp TTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred HccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 66777777777777776 5444 3467777777777777776 555554 366677777777777644333344566666
Q ss_pred CCCcCCceecCCCCcccC-------------CCCCCccCC-ccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeee
Q 043964 533 SLRTFDEFHVSRGKAVDG-------------HKGCNNVFP-NWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVII 596 (713)
Q Consensus 533 ~L~~L~~~~~~~~~ei~~-------------~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L 596 (713)
+|+.|++..+.....+.. ..+....+| ..+..+++|+.|+|++|. +..++. +..+++|+.|+|
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEEC
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEEC
Confidence 666666655443221110 011122355 356789999999999995 444544 889999999999
Q ss_pred ccCccceEeCccccCCcccccCcccceeecccccccccccccccccccccccccccccccccccccc
Q 043964 597 TYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPK 663 (713)
Q Consensus 597 ~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 663 (713)
+++. +..+.... ...+++|+.|+++++ .+..+... ....+++|+.|++++++-
T Consensus 280 ~~n~-l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 280 VGGQ-LAVVEPYA-----FRGLNYLRVLNVSGN-QLTTLEES-------VFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CSSC-CSEECTTT-----BTTCTTCCEEECCSS-CCSCCCGG-------GBSCGGGCCEEECCSSCE
T ss_pred CCCc-cceECHHH-----hcCcccCCEEECCCC-cCceeCHh-------HcCCCcccCEEEccCCCc
Confidence 9864 44433222 236899999999986 34444322 234789999999998854
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=200.17 Aligned_cols=126 Identities=16% Similarity=0.205 Sum_probs=95.6
Q ss_pred CCceEEEEEEecCCCCCC-ccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc
Q 043964 377 DKKVCHLMLIIGEGASFP-VSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN 455 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 455 (713)
+.+++++.+.++.+..++ ..+..+++|++|++++|.+. ...+..|..+++|++|+|++|. +..+|..
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~N~------l~~lp~~ 87 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ------YLDISVFKFNQELEYLDLSHNK------LVKISCH 87 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC------EEEGGGGTTCTTCCEEECCSSC------CCEEECC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccC------CcChHHhhcccCCCEEecCCCc------eeecCcc
Confidence 578899999888877654 46788999999999998642 2234448889999999999998 6677776
Q ss_pred hhccCcCCccccCCcccccc--cCccccCCCCCcEEeccCccCccccchhhccCCcc--ceeeccCccc
Q 043964 456 IEKLIHLKYLNLSCLTSIRK--LPEPLCELYNLEKLDISHCWYLKELPEGIGKLINM--KHLLNERTDS 520 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~ 520 (713)
.+++|++|+|++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|..
T Consensus 88 --~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp --CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred --ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 78999999999998 664 67889999999999998887 433 234555555 6666665543
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.2e-19 Score=204.95 Aligned_cols=257 Identities=17% Similarity=0.150 Sum_probs=184.4
Q ss_pred CCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC-cchhccCcCCccccCCcccccccC
Q 043964 399 RVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-RNIEKLIHLKYLNLSCLTSIRKLP 477 (713)
Q Consensus 399 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp 477 (713)
.+++++.|.+.++.+ ..+++.+|..+++|++|+|++|. +..+| ..++.+++|++|+|++|. +..+|
T Consensus 49 ~l~~l~~l~l~~~~l------~~lp~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNA-IRYLP 115 (597)
T ss_dssp GGCCCSEEEESSCEE------SEECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred cCCCceEEEeeCCCC------CCcCHHHHccCCCCcEEECCCCC------CCCCChHHhcCCCCCCEEECCCCc-CCCCC
Confidence 468899999998863 44466778999999999999999 55665 489999999999999999 77776
Q ss_pred c-cccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCc----ccC-
Q 043964 478 E-PLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKA----VDG- 550 (713)
Q Consensus 478 ~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~e----i~~- 550 (713)
. .++.+++|++|+|++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++..+..... +..
T Consensus 116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 194 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTC
T ss_pred HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhh
Confidence 4 57999999999999998 8888887 48999999999999966555666799999999999988765420 000
Q ss_pred -----CCCCCc--cCCccc---------------cCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCcc
Q 043964 551 -----HKGCNN--VFPNWM---------------MSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNE 608 (713)
Q Consensus 551 -----~~~~~~--~~p~~~---------------~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 608 (713)
..+... ..|..+ ...++|+.|+|++|. +...+.++.+++|+.|+|+++. +..+...
T Consensus 195 ~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~ 272 (597)
T 3oja_B 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNE-LEKIMYH 272 (597)
T ss_dssp SEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCEEESG
T ss_pred hhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCChhhccCCCCCEEECCCCc-cCCCCHH
Confidence 000000 000000 012456666666663 3344557778888888888754 2222211
Q ss_pred ccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 609 FLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 609 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
....+++|+.|+|+++ .+..++... ..+|+|+.|++++| .+..+|..+..+++|+.|+++ +|.
T Consensus 273 -----~~~~l~~L~~L~Ls~N-~l~~l~~~~--------~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~-~N~ 335 (597)
T 3oja_B 273 -----PFVKMQRLERLYISNN-RLVALNLYG--------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLD-HNS 335 (597)
T ss_dssp -----GGTTCSSCCEEECTTS-CCCEEECSS--------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECC-SSC
T ss_pred -----HhcCccCCCEEECCCC-CCCCCCccc--------ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECC-CCC
Confidence 1236788888888874 344444332 36889999999988 566788777778899999998 665
No 24
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.80 E-value=2.6e-20 Score=210.08 Aligned_cols=162 Identities=19% Similarity=0.143 Sum_probs=123.3
Q ss_pred EEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCc-eeEEEeccccccc--------
Q 043964 171 IYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDK-ILWVCVSETFEEI-------- 241 (713)
Q Consensus 171 ~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~-------- 241 (713)
.|||+.++++|.++|... +..+||+|+||||+||||||+.+|++.+++.+|+. ++||+|++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999842 24789999999999999999999998889999997 9999998765430
Q ss_pred --------------------------------------------------------cccCCC--------c---------
Q 043964 242 --------------------------------------------------------AFHGRS--------I--------- 248 (713)
Q Consensus 242 --------------------------------------------------------~f~~~~--------~--------- 248 (713)
.|+.+. .
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~ 284 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHH
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCC
Confidence 000000 0
Q ss_pred -----h--------hchHHHHH---------HHHHHHhcCCCCchhH---------------------------------
Q 043964 249 -----E--------ECEKLEQI---------GQKIASRCKGLPLAAK--------------------------------- 273 (713)
Q Consensus 249 -----~--------~~~~l~~i---------~~~i~~~c~GlPlai~--------------------------------- 273 (713)
+ ...+-.++ .....+-|+|+||||+
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd 364 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHH
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHH
Confidence 0 00000000 0112234999999987
Q ss_pred ---------HHhhhccCCCCCccChHHHHHHHHHcCccccCCCccHHHHHHHHHHHHHhCcCCcccccCCCCceeEEEeC
Q 043964 274 ---------CFSYCAIFPKDFNIMKEKLITMWMAQGYFSVEQDEEVDIIGEEYFNILATHSFFQEFKKDDDNLIVACKMH 344 (713)
Q Consensus 274 ---------cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~e~~~~~~~~eL~~~~ll~~~~~~~~~~~~~~~mh 344 (713)
||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++... ....|+||
T Consensus 365 ~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMH 429 (1221)
T 1vt4_I 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQP-----KESTISIP 429 (1221)
T ss_dssp HSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCC
T ss_pred hCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEeh
Confidence 999999999999999999999999987 135888999999999999842 12468999
Q ss_pred hHHHHHHH
Q 043964 345 DIVHDFAQ 352 (713)
Q Consensus 345 dlv~dla~ 352 (713)
|++++++.
T Consensus 430 DLllELr~ 437 (1221)
T 1vt4_I 430 SIYLELKV 437 (1221)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998663
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=4.1e-19 Score=199.25 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=84.5
Q ss_pred CCCceEEEEEEecCCCCCC-ccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc
Q 043964 376 LDKKVCHLMLIIGEGASFP-VSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR 454 (713)
Q Consensus 376 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 454 (713)
.+++++.+.+.++.+..++ ..+..+++|++|++++|.+. .+.+..|..+++|++|+|++|. +..+|.
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~------l~~lp~ 117 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNR------LQNISC 117 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSC------CCEECS
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCc------CCccCc
Confidence 3578899999988887665 47888999999999998642 2234447889999999999998 667877
Q ss_pred chhccCcCCccccCCcccccccC--ccccCCCCCcEEeccCcc
Q 043964 455 NIEKLIHLKYLNLSCLTSIRKLP--EPLCELYNLEKLDISHCW 495 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~ 495 (713)
. .+++|++|++++|. +..+| ..++++++|++|++++|.
T Consensus 118 ~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 118 C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc
Confidence 6 78899999999988 77654 678888888888888876
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=2.4e-19 Score=203.37 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=114.7
Q ss_pred cCCCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcc-c
Q 043964 375 SLDKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILE-I 452 (713)
Q Consensus 375 ~~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~-l 452 (713)
..+..++++.+.++.+..+ +..+.++++|++|++++|.+. .+.+..|.++++|++|+|++|. +.. .
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~------l~~~~ 97 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANP------LIFMA 97 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCC------CSEEC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCc------ccccC
Confidence 3477889999988887765 457888999999999998642 2234447889999999999998 444 4
Q ss_pred CcchhccCcCCccccCCccccccc-CccccCCCCCcEEeccCccCccccc-hhhccCCccceeeccCcccCCcccccCcC
Q 043964 453 PRNIEKLIHLKYLNLSCLTSIRKL-PEPLCELYNLEKLDISHCWYLKELP-EGIGKLINMKHLLNERTDSLGRMPAGIAR 530 (713)
Q Consensus 453 p~~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~ 530 (713)
|..++.+++|++|++++|. +..+ |..++++++|++|++++|. +..++ +.+..+++|++|++++|......|..++.
T Consensus 98 ~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp TTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred hhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence 6788899999999999988 7776 5678889999999999887 55542 33445888899988888554444566777
Q ss_pred CCCCC--cCCceec
Q 043964 531 LTSLR--TFDEFHV 542 (713)
Q Consensus 531 l~~L~--~L~~~~~ 542 (713)
+++|+ +|++..+
T Consensus 176 l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 176 LQQATNLSLNLNGN 189 (606)
T ss_dssp TTTCCSEEEECTTC
T ss_pred hcccceeEEecCCC
Confidence 77777 4444433
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=7e-19 Score=183.55 Aligned_cols=258 Identities=16% Similarity=0.149 Sum_probs=150.3
Q ss_pred eEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-Ccchhc
Q 043964 380 VCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEK 458 (713)
Q Consensus 380 ~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~ 458 (713)
.+.+.+..+....+|..+ .++|++|.+.+|.+. ..++..|..+++|++|+|++|. +..+ |..++.
T Consensus 35 l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~ 100 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDIS------ELRKDDFKGLQHLYALVLVNNK------ISKIHEKAFSP 100 (332)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSC------CCEECGGGSTT
T ss_pred CCEEECCCCCccccCCCC--CCCCeEEECCCCcCC------ccCHhHhhCCCCCcEEECCCCc------cCccCHhHhhC
Confidence 344444444444444433 357777777777532 2223336677777777777777 4444 566777
Q ss_pred cCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccC--CcccccCcCCCCCC
Q 043964 459 LIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSL--GRMPAGIARLTSLR 535 (713)
Q Consensus 459 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l--~~~p~~i~~l~~L~ 535 (713)
+++|++|++++|. +..+|..+. ++|++|++++|. +..+|.. +..+++|++|++++|... ...|..++.+ +|+
T Consensus 101 l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 101 LRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp CTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred cCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 7777777777777 777776655 677777777776 5566553 677777777777777442 2345556666 777
Q ss_pred cCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCC--CCCCCCCcceeeeccCccceEeCccccCCc
Q 043964 536 TFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLP--PLGILPSLEKVIITYMISVKRVGNEFLGIE 613 (713)
Q Consensus 536 ~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 613 (713)
.|++..+.... +|..+. ++|+.|+|++|.. ..++ .+..+++|+.|+++++. +..+...
T Consensus 176 ~L~l~~n~l~~-----------l~~~~~--~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~----- 235 (332)
T 2ft3_A 176 YLRISEAKLTG-----------IPKDLP--ETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQ-IRMIENG----- 235 (332)
T ss_dssp CCBCCSSBCSS-----------CCSSSC--SSCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCCSSC-CCCCCTT-----
T ss_pred EEECcCCCCCc-----------cCcccc--CCCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCc-CCcCChh-----
Confidence 77776654332 444432 5677777776633 3332 26667777777776543 2222211
Q ss_pred ccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCC-CCC------CCCccEEEEEcCC
Q 043964 614 IIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDH-FHQ------TTTLKELIIRSNC 686 (713)
Q Consensus 614 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~-l~~------l~~L~~L~i~~~C 686 (713)
....+++|+.|+++++ .+..++.. ...+++|+.|++++| .++.+|.. +.. .++|+.|++. ++
T Consensus 236 ~~~~l~~L~~L~L~~N-~l~~lp~~--------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~-~N 304 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNN-KLSRVPAG--------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF-NN 304 (332)
T ss_dssp GGGGCTTCCEEECCSS-CCCBCCTT--------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC-SS
T ss_pred HhhCCCCCCEEECCCC-cCeecChh--------hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee-cC
Confidence 1225667777777654 33333322 235667777777766 45555432 211 3556677776 54
Q ss_pred c
Q 043964 687 G 687 (713)
Q Consensus 687 ~ 687 (713)
|
T Consensus 305 ~ 305 (332)
T 2ft3_A 305 P 305 (332)
T ss_dssp S
T ss_pred c
Confidence 4
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=6.9e-19 Score=183.59 Aligned_cols=270 Identities=17% Similarity=0.178 Sum_probs=202.3
Q ss_pred CCceEEEEEEecCCCCCC-ccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc
Q 043964 377 DKKVCHLMLIIGEGASFP-VSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN 455 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 455 (713)
++.++.+.+.++.+..++ ..+.++++|++|.+.+|.+. ...+..|..+++|++|+|++|. +..+|..
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~ 120 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------KIHEKAFSPLRKLQKLYISKNH------LVEIPPN 120 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------EECGGGSTTCTTCCEEECCSSC------CCSCCSS
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC------ccCHhHhhCcCCCCEEECCCCc------CCccCcc
Confidence 568899999888777653 47889999999999998743 2234448899999999999999 7788877
Q ss_pred hhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCcc---ccchhhccCCccceeeccCcccCCcccccCcCC
Q 043964 456 IEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLK---ELPEGIGKLINMKHLLNERTDSLGRMPAGIARL 531 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l 531 (713)
+. .+|++|++++|. +..+|. .+..+++|++|++++|. +. ..|..+..+ +|++|++++| .+..+|..+.
T Consensus 121 ~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~-- 192 (332)
T 2ft3_A 121 LP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP-- 192 (332)
T ss_dssp CC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--
T ss_pred cc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--
Confidence 66 799999999999 888875 48999999999999998 53 456667777 9999999999 5566887664
Q ss_pred CCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCccceEeCccc
Q 043964 532 TSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITYMISVKRVGNEF 609 (713)
Q Consensus 532 ~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~ 609 (713)
++|++|++..+.... ..|..+..+++|+.|+|++|. +..++. ++.+++|+.|+++++. +..++..
T Consensus 193 ~~L~~L~l~~n~i~~----------~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~- 259 (332)
T 2ft3_A 193 ETLNELHLDHNKIQA----------IELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRVPAG- 259 (332)
T ss_dssp SSCSCCBCCSSCCCC----------CCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT-
T ss_pred CCCCEEECCCCcCCc----------cCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc-CeecChh-
Confidence 799999998876442 234678889999999999994 444443 8889999999999864 4444432
Q ss_pred cCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccC--CCCCCCCCCCCCccEEEEEcCCc
Q 043964 610 LGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKL--KALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 610 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L--~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
...+++|+.|+++++ .+..+...... +......+++|+.|++.+++.. ...|..+..+++|+.++++ ++.
T Consensus 260 -----l~~l~~L~~L~l~~N-~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~-~n~ 331 (332)
T 2ft3_A 260 -----LPDLKLLQVVYLHTN-NITKVGVNDFC-PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG-NYK 331 (332)
T ss_dssp -----GGGCTTCCEEECCSS-CCCBCCTTSSS-CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred -----hhcCccCCEEECCCC-CCCccChhHcc-ccccccccccccceEeecCcccccccCcccccccchhhhhhcc-ccc
Confidence 236899999999975 35544332110 0001123688999999999755 3445667889999999998 653
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=7.8e-19 Score=183.05 Aligned_cols=259 Identities=15% Similarity=0.122 Sum_probs=162.6
Q ss_pred EEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-Ccchhcc
Q 043964 381 CHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEKL 459 (713)
Q Consensus 381 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L 459 (713)
+.+.+.......+|..+ .++++.|.+++|.+.. +++..|..+++|++|+|++|. +..+ |..+..+
T Consensus 34 ~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l 99 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITE------IKDGDFKNLKNLHTLILINNK------ISKISPGAFAPL 99 (330)
T ss_dssp TEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCC------BCTTTTTTCTTCCEEECCSSC------CCCBCTTTTTTC
T ss_pred eEEEecCCCccccCccC--CCCCeEEECCCCcCCE------eChhhhccCCCCCEEECCCCc------CCeeCHHHhcCC
Confidence 33444333444434333 2577888888776422 123336778888888888887 4444 6677888
Q ss_pred CcCCccccCCcccccccCccccCCCCCcEEeccCccCccccch-hhccCCccceeeccCcccCC--cccccCcCCCCCCc
Q 043964 460 IHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPE-GIGKLINMKHLLNERTDSLG--RMPAGIARLTSLRT 536 (713)
Q Consensus 460 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~--~~p~~i~~l~~L~~ 536 (713)
++|++|++++|. +..+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|.... ..+..++.+++|+.
T Consensus 100 ~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 100 VKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp TTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 888888888887 777776654 688888888877 555544 47778888888888774422 44566777888888
Q ss_pred CCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCccc
Q 043964 537 FDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEII 615 (713)
Q Consensus 537 L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 615 (713)
|++..+.... +|..+. ++|+.|++++|......|. +..+++|+.|+++++. +..+.... .
T Consensus 176 L~l~~n~l~~-----------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----~ 236 (330)
T 1xku_A 176 IRIADTNITT-----------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS-----L 236 (330)
T ss_dssp EECCSSCCCS-----------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTT-----G
T ss_pred EECCCCcccc-----------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhh-----c
Confidence 8777665432 454432 6788888887743222222 7777888888887654 33332211 2
Q ss_pred ccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCC-CC------CCCCccEEEEEcCCc
Q 043964 616 IAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDH-FH------QTTTLKELIIRSNCG 687 (713)
Q Consensus 616 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~-l~------~l~~L~~L~i~~~C~ 687 (713)
..+++|+.|+++++ .+..++.. ...+++|++|++++| .++.+|.. +. ..++|+.|++. +.|
T Consensus 237 ~~l~~L~~L~L~~N-~l~~lp~~--------l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~-~N~ 304 (330)
T 1xku_A 237 ANTPHLRELHLNNN-KLVKVPGG--------LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF-SNP 304 (330)
T ss_dssp GGSTTCCEEECCSS-CCSSCCTT--------TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC-SSS
T ss_pred cCCCCCCEEECCCC-cCccCChh--------hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEee-cCc
Confidence 25677888888765 34433332 336778888888877 56666542 21 23667778877 444
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=7.5e-19 Score=191.92 Aligned_cols=260 Identities=15% Similarity=0.183 Sum_probs=176.1
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-CcchhccCcCCccccCCccccccc-Cc
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLKYLNLSCLTSIRKL-PE 478 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~l-p~ 478 (713)
++|++|++++|.+. ...+..|..+++|++|+|++|.+ ...+ |..+..+++|++|+|++|. +..+ |.
T Consensus 30 ~~l~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~n~~-----~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSLNSIA------ELNETSFSRLQDLQFLKVEQQTP-----GLVIRNNTFRGLSSLIILKLDYNQ-FLQLETG 97 (455)
T ss_dssp TTCCEEECCSSCCC------EECTTTTSSCTTCCEEECCCCST-----TCEECTTTTTTCTTCCEEECTTCT-TCEECTT
T ss_pred CccCEEEecCCccC------cCChhHhccCccccEEECcCCcc-----cceECcccccccccCCEEeCCCCc-cCccChh
Confidence 78999999999742 22344488999999999999983 2244 5679999999999999999 6655 78
Q ss_pred cccCCCCCcEEeccCccCccccchh--hccCCccceeeccCcccCCccccc-CcCCCCCCcCCceecCCCCc----ccC-
Q 043964 479 PLCELYNLEKLDISHCWYLKELPEG--IGKLINMKHLLNERTDSLGRMPAG-IARLTSLRTFDEFHVSRGKA----VDG- 550 (713)
Q Consensus 479 ~i~~L~~L~~L~l~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~e----i~~- 550 (713)
.++++++|++|++++|......|.. +..+++|++|++++|......|.. ++.+++|++|++..+..... +..
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 8999999999999999843345655 899999999999999665555665 88999999999987754321 000
Q ss_pred ----------CCCCCccCC-cc--------ccCC----------------------------------------------
Q 043964 551 ----------HKGCNNVFP-NW--------MMSL---------------------------------------------- 565 (713)
Q Consensus 551 ----------~~~~~~~~p-~~--------~~~l---------------------------------------------- 565 (713)
..+....++ .+ +..+
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 000000000 00 0012
Q ss_pred -----------------CCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecc
Q 043964 566 -----------------TNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTIS 627 (713)
Q Consensus 566 -----------------~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~ 627 (713)
++|+.|++++|......|. ++.+++|+.|+|+++. +..+.... ...+++|++|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----~~~l~~L~~L~Ls 331 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNA-----FWGLTHLLKLNLS 331 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT-----TTTCTTCCEEECC
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhH-----hcCcccCCEEECC
Confidence 3444455544433222333 6677777777777654 33322211 2357888888888
Q ss_pred ccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 628 WMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 628 ~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
++. +..+. +.....+++|++|++++|......|..+..+++|++|+++ +|.
T Consensus 332 ~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~ 382 (455)
T 3v47_A 332 QNF-LGSID-------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD-TNQ 382 (455)
T ss_dssp SSC-CCEEC-------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSC
T ss_pred CCc-cCCcC-------hhHhcCcccCCEEECCCCcccccChhhccccccccEEECC-CCc
Confidence 753 33322 1224478999999999994433447788899999999998 653
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=3.2e-19 Score=202.31 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=72.8
Q ss_pred ceEEEEEEecCCCCCCc-cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-Ccch
Q 043964 379 KVCHLMLIIGEGASFPV-STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNI 456 (713)
Q Consensus 379 ~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i 456 (713)
.++.+.+..+....++. .+..+++|+.|++.+|.+. . ++..+..+++|++|++++|. +..+ |..+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~-lp~~l~~l~~L~~L~l~~n~------l~~~~~~~~ 321 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS------E-LPSGLVGLSTLKKLVLSANK------FENLCQISA 321 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS------C-CCSSCCSCTTCCEEECTTCC------CSBGGGGCG
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC------C-CChhhcccccCCEEECccCC------cCcCchhhh
Confidence 44555555544443322 2455556666666555432 1 11114455555555555555 3232 3345
Q ss_pred hccCcCCccccCCcccccccCcc-ccCCCCCcEEeccCccCcccc---chhhccCCccceeeccCcccCCcccccCcCCC
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKEL---PEGIGKLINMKHLLNERTDSLGRMPAGIARLT 532 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~ 532 (713)
..+++|++|++++|.....+|.. +..+++|++|++++|. +... |..+..+++|++|++++|......|..++.++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence 55555555555555522244432 5555555555555554 3332 33455555555555555543333344455555
Q ss_pred CCCcCCceec
Q 043964 533 SLRTFDEFHV 542 (713)
Q Consensus 533 ~L~~L~~~~~ 542 (713)
+|+.|++..+
T Consensus 401 ~L~~L~l~~n 410 (606)
T 3t6q_A 401 QLELLDLAFT 410 (606)
T ss_dssp TCSEEECTTC
T ss_pred cCCeEECCCC
Confidence 5555555443
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=9.3e-20 Score=191.95 Aligned_cols=265 Identities=18% Similarity=0.163 Sum_probs=187.3
Q ss_pred ecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-CcchhccCcCCcc
Q 043964 387 IGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLKYL 465 (713)
Q Consensus 387 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L 465 (713)
++....+|..+. ++|++|++++|.+. .+++..|..+++|++|+|++|. +..+ |..+.++++|++|
T Consensus 40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 40 SGSLNSIPSGLT--EAVKSLDLSNNRIT------YISNSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp STTCSSCCTTCC--TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEE
T ss_pred CCCccccccccc--ccCcEEECCCCcCc------ccCHHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEE
Confidence 334444454433 58999999988642 2233347889999999999998 5555 4568899999999
Q ss_pred ccCCcccccccCcc-ccCCCCCcEEeccCccCccccch--hhccCCccceeeccCcccCCcc-cccCcCCCCCCcCCcee
Q 043964 466 NLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKELPE--GIGKLINMKHLLNERTDSLGRM-PAGIARLTSLRTFDEFH 541 (713)
Q Consensus 466 ~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~ 541 (713)
++++|. +..+|.. ++.+++|++|++++|. +..+|. .+.++++|++|++++|..+..+ |..++.+++|++|++..
T Consensus 106 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 106 DLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp ECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 999998 8888866 8889999999999987 778887 6888999999999998655555 46788899999999888
Q ss_pred cCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCccceEeCccccCCcccccCc
Q 043964 542 VSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFP 619 (713)
Q Consensus 542 ~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~ 619 (713)
+... ...|.++..+++|+.|++++|. +..+|. ++.+++|+.|+++++. +..++... .......+
T Consensus 184 n~l~----------~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~--l~~~~~~~ 249 (353)
T 2z80_A 184 SDLQ----------SYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSE--LSTGETNS 249 (353)
T ss_dssp TTCC----------EECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC--------CCC
T ss_pred CCcC----------ccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccccccc--cccccccc
Confidence 7643 2357788889999999999885 344444 4457899999998754 22111110 01112345
Q ss_pred ccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCC-CCCCCccEEEEEcCCc
Q 043964 620 KLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHF-HQTTTLKELIIRSNCG 687 (713)
Q Consensus 620 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l-~~l~~L~~L~i~~~C~ 687 (713)
.++.+.+.++. +..-... ..+.....+++|+.|++++| .++.+|..+ ..+++|++|+++ +++
T Consensus 250 ~l~~l~L~~~~-l~~~~l~---~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~-~N~ 312 (353)
T 2z80_A 250 LIKKFTFRNVK-ITDESLF---QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH-TNP 312 (353)
T ss_dssp CCCEEEEESCB-CCHHHHH---HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SSC
T ss_pred hhhcccccccc-ccCcchh---hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee-CCC
Confidence 66677666542 1110000 01112347899999999998 778999875 789999999998 555
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=1.2e-18 Score=200.26 Aligned_cols=291 Identities=19% Similarity=0.191 Sum_probs=192.9
Q ss_pred CCCceEEEEEEecCCCCCCc-cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc
Q 043964 376 LDKKVCHLMLIIGEGASFPV-STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR 454 (713)
Q Consensus 376 ~~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 454 (713)
.+.+++++.+.++.+..++. .+.++++|++|++++|.+. ...+..|..+++|++|+|++|. +..+|.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~------l~~l~~ 90 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS------KLEPELCQKLPMLKVLNLQHNE------LSQLSD 90 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC------CCCTTHHHHCTTCCEEECCSSC------CCCCCT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC------ccCHHHHhcccCcCEEECCCCc------cCccCh
Confidence 46789999999988776554 5888999999999998643 2234558899999999999998 677776
Q ss_pred -chhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccC--cC
Q 043964 455 -NIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGI--AR 530 (713)
Q Consensus 455 -~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i--~~ 530 (713)
.++++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|......|..+ ..
T Consensus 91 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 59999999999999998 77776 579999999999999998444456668899999999999985433333333 34
Q ss_pred CCCCCcCCceecCCCCcccC----------------------------------------CC-CCCccCCccccCCC--C
Q 043964 531 LTSLRTFDEFHVSRGKAVDG----------------------------------------HK-GCNNVFPNWMMSLT--N 567 (713)
Q Consensus 531 l~~L~~L~~~~~~~~~ei~~----------------------------------------~~-~~~~~~p~~~~~l~--~ 567 (713)
+++|+.|++..+........ .. ......|.++..++ +
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 57788887776543320000 00 01122344555443 4
Q ss_pred CcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccccccccccccc-cccccc
Q 043964 568 PRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGI-TRTGNA 645 (713)
Q Consensus 568 L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~-~~~~~~ 645 (713)
|+.|+|++|......|. ++.+++|+.|+++++. +..+.... ...+++|+.|.+.++..-..+.... ......
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHS-----LHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC-BSEECTTT-----TTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCc-cCccChhh-----hcCCCCccEEeccchhhhcccccccccccChh
Confidence 88888888743333333 7788888888888764 22222211 2357788888887532111100000 000001
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCC
Q 043964 646 FINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNC 686 (713)
Q Consensus 646 ~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C 686 (713)
....+++|++|++++|.-....|..+..+++|++|+++ +|
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n 363 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NS 363 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT-TC
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC-CC
Confidence 23467888888888884333344556778888888887 54
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=201.01 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=113.4
Q ss_pred cCCCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC
Q 043964 375 SLDKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP 453 (713)
Q Consensus 375 ~~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp 453 (713)
..+..++++.+.++.+..+ +..+..+++|++|++++|.+. .+++..|..+++|++|+|++|. +..+|
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~i~~~~~~~l~~L~~L~L~~n~------l~~~~ 92 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNP------IQSLA 92 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCC------CCEEC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC------ccCcccccCchhCCEEeCcCCc------CCccC
Confidence 3467889999988877654 346788999999999998642 2234457889999999999998 55554
Q ss_pred -cchhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCcc--ccchhhccCCccceeeccCcccCCcccccCc
Q 043964 454 -RNIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLK--ELPEGIGKLINMKHLLNERTDSLGRMPAGIA 529 (713)
Q Consensus 454 -~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~ 529 (713)
..++.+.+|++|++++|. +..+|. .++++++|++|++++|. +. .+|..++++++|++|++++|......|..++
T Consensus 93 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred HhhhcCccccccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 678999999999999998 888775 68899999999999987 54 3788899999999999998854433344555
Q ss_pred CCCCC
Q 043964 530 RLTSL 534 (713)
Q Consensus 530 ~l~~L 534 (713)
.+++|
T Consensus 171 ~l~~L 175 (570)
T 2z63_A 171 VLHQM 175 (570)
T ss_dssp HHHTC
T ss_pred chhcc
Confidence 55555
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=2.6e-18 Score=186.62 Aligned_cols=240 Identities=13% Similarity=0.091 Sum_probs=119.5
Q ss_pred ceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhc
Q 043964 379 KVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEK 458 (713)
Q Consensus 379 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 458 (713)
+++.+.+.++.+..++ .+..+++|++|++++|.+... + +..+++|++|++++|. +..+| +++
T Consensus 43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-------~--~~~l~~L~~L~Ls~N~------l~~~~--~~~ 104 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-------D--LSQNTNLTYLACDSNK------LTNLD--VTP 104 (457)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-------C--CTTCTTCSEEECCSSC------CSCCC--CTT
T ss_pred CCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-------c--cccCCCCCEEECcCCC------Cceee--cCC
Confidence 3444444444444322 344455555555555542211 0 3444555555555555 22332 444
Q ss_pred cCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCc---------------
Q 043964 459 LIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGR--------------- 523 (713)
Q Consensus 459 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~--------------- 523 (713)
+++|++|++++|. +..+| ++.+++|++|++++|. +..+| ++.+++|++|++++|..+..
T Consensus 105 l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 105 LTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred CCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence 5555555555554 44443 4455555555555544 33332 44444444444444433333
Q ss_pred ------ccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeec
Q 043964 524 ------MPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIIT 597 (713)
Q Consensus 524 ------~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 597 (713)
+| ++.+++|+.|++..+.... + .+..+++|+.|++++|. +..+| ++.+++|+.|+++
T Consensus 179 ~n~l~~l~--l~~l~~L~~L~l~~N~l~~-----------~--~l~~l~~L~~L~Ls~N~-l~~ip-~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 179 FNKITELD--VSQNKLLNRLNCDTNNITK-----------L--DLNQNIQLTFLDCSSNK-LTEID-VTPLTQLTYFDCS 241 (457)
T ss_dssp SSCCCCCC--CTTCTTCCEEECCSSCCSC-----------C--CCTTCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECC
T ss_pred CCccceec--cccCCCCCEEECcCCcCCe-----------e--ccccCCCCCEEECcCCc-ccccC-ccccCCCCEEEee
Confidence 33 4444455555444433221 2 24567777777777773 34465 7777788888777
Q ss_pred cCccceEeCccccCCcccccCcccceeecccccccccccccccc-ccccccccccccccccccccccCCCCCC
Q 043964 598 YMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITR-TGNAFINIMPRLSSLTIDSCPKLKALPD 669 (713)
Q Consensus 598 ~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~~p~L~~L~l~~c~~L~~lp~ 669 (713)
++. +..++ ...|++|+.|.++. .+++.+...... .+......+++|+.|++++|+.+..+|.
T Consensus 242 ~N~-l~~~~--------~~~l~~L~~L~l~~-n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 242 VNP-LTELD--------VSTLSKLTTLHCIQ-TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp SSC-CSCCC--------CTTCTTCCEEECTT-CCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCc-CCCcC--------HHHCCCCCEEeccC-CCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 643 22211 12456666555443 223332221110 0111134679999999999988777764
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=3.3e-19 Score=183.77 Aligned_cols=178 Identities=25% Similarity=0.243 Sum_probs=90.7
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccc
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPL 480 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 480 (713)
++|++|.+.++.+. .++..+|..+++|++|+|++|.+.. +...|..+..+++|++|++++|. +..+|..+
T Consensus 28 ~~l~~L~L~~n~l~------~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~ 97 (306)
T 2z66_A 28 SSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSSNGLSF---KGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF 97 (306)
T ss_dssp TTCCEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCE---EEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred CCCCEEECCCCccC------ccCHhHhhccccCCEEECCCCccCc---ccCcccccccccccCEEECCCCc-cccChhhc
Confidence 45666666655432 1122334556666666666665321 11224445556666666666665 55666556
Q ss_pred cCCCCCcEEeccCccCccccch--hhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccC
Q 043964 481 CELYNLEKLDISHCWYLKELPE--GIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVF 558 (713)
Q Consensus 481 ~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~ 558 (713)
..+++|++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|++|++..+... ....
T Consensus 98 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~ 167 (306)
T 2z66_A 98 LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---------ENFL 167 (306)
T ss_dssp ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG---------GGEE
T ss_pred CCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc---------cccc
Confidence 666666666666665 444443 4556666666666666443334444555555555555443321 0124
Q ss_pred CccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeecc
Q 043964 559 PNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITY 598 (713)
Q Consensus 559 p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 598 (713)
|.++..+++|+.|+|++|......|. ++.+++|+.|++++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 44555555555555555532221122 44455555555543
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=3.1e-18 Score=178.43 Aligned_cols=242 Identities=18% Similarity=0.219 Sum_probs=186.5
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc-chhccCcCCccccCCccccccc-Cc
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKYLNLSCLTSIRKL-PE 478 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~l-p~ 478 (713)
.+++.+.+.++.+.. ++. .-.+.|++|+|++|. +..++. .++++++|++|+|++|. +..+ |.
T Consensus 31 c~l~~l~~~~~~l~~------lp~---~~~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 94 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK------VPK---DLPPDTALLDLQNNK------ITEIKDGDFKNLKNLHTLILINNK-ISKISPG 94 (330)
T ss_dssp EETTEEECTTSCCCS------CCC---SCCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTT
T ss_pred CCCeEEEecCCCccc------cCc---cCCCCCeEEECCCCc------CCEeChhhhccCCCCCEEECCCCc-CCeeCHH
Confidence 378888888775422 111 123689999999999 666665 79999999999999998 7766 78
Q ss_pred cccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccC
Q 043964 479 PLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVF 558 (713)
Q Consensus 479 ~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~ 558 (713)
.++.+++|++|++++|. +..+|..+. ++|++|++++|......+..++.+++|++|++..+.... ....
T Consensus 95 ~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~ 163 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--------SGIE 163 (330)
T ss_dssp TTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG--------GGBC
T ss_pred HhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc--------cCcC
Confidence 89999999999999998 888998765 799999999995544445568899999999998776431 1235
Q ss_pred CccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccc
Q 043964 559 PNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYG 638 (713)
Q Consensus 559 p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 638 (713)
|..+..+++|+.|++++| .+..+|.. ..++|+.|+++++. +..+.... ...+++|+.|+++++. +..+..
T Consensus 164 ~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~-----~~~l~~L~~L~Ls~n~-l~~~~~- 233 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHLDGNK-ITKVDAAS-----LKGLNNLAKLGLSFNS-ISAVDN- 233 (330)
T ss_dssp TTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECTTSC-CCEECTGG-----GTTCTTCCEEECCSSC-CCEECT-
T ss_pred hhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEEECCCCc-CCccCHHH-----hcCCCCCCEEECCCCc-CceeCh-
Confidence 677888999999999998 45566652 23899999999865 44443222 2368999999998763 333322
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 639 ITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 639 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
.....+++|++|++++| .+..+|..+..+++|++|+++ +|+
T Consensus 234 ------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~-~N~ 274 (330)
T 1xku_A 234 ------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLH-NNN 274 (330)
T ss_dssp ------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECC-SSC
T ss_pred ------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECC-CCc
Confidence 12347899999999999 778999999999999999999 654
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=4.7e-18 Score=184.63 Aligned_cols=262 Identities=16% Similarity=0.141 Sum_probs=174.5
Q ss_pred CceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchh
Q 043964 378 KKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIE 457 (713)
Q Consensus 378 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 457 (713)
.+++.+.+.++.+..+ .+..+++|++|++++|.+... + +..+++|++|++++|. +..++ ++
T Consensus 85 ~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L~~N~l~~l-------~--~~~l~~L~~L~l~~N~------l~~l~--l~ 145 (457)
T 3bz5_A 85 TNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTKL-------D--VSQNPLLTYLNCARNT------LTEID--VS 145 (457)
T ss_dssp TTCSEEECCSSCCSCC--CCTTCTTCCEEECCSSCCSCC-------C--CTTCTTCCEEECTTSC------CSCCC--CT
T ss_pred CCCCEEECcCCCCcee--ecCCCCcCCEEECCCCcCCee-------c--CCCCCcCCEEECCCCc------cceec--cc
Confidence 4556666665555543 255566666666666653221 1 5566677777777776 33443 66
Q ss_pred ccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcC
Q 043964 458 KLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTF 537 (713)
Q Consensus 458 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 537 (713)
.+++|++|++++|..+..++ ++.+++|++|++++|. +..+| +..+++|+.|++++|. +..+ .++.+++|+.|
T Consensus 146 ~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L 217 (457)
T 3bz5_A 146 HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFL 217 (457)
T ss_dssp TCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEE
T ss_pred cCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCc-CCee--ccccCCCCCEE
Confidence 77777777777775466663 7788888888888887 77777 7889999999999984 4444 37899999999
Q ss_pred CceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCc---cccCCcc
Q 043964 538 DEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGN---EFLGIEI 614 (713)
Q Consensus 538 ~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~---~~~~~~~ 614 (713)
++..+.... +| +..+++|+.|++++|. +..+| ++.+++|+.|++++. .++.+.- .+.+.-.
T Consensus 218 ~Ls~N~l~~-----------ip--~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 218 DCSSNKLTE-----------ID--VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp ECCSSCCSC-----------CC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEE
T ss_pred ECcCCcccc-----------cC--ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEeccCC-CCCEEECCCCccCCccc
Confidence 998876542 56 6789999999999994 44444 456666666655432 1222211 1111111
Q ss_pred cccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcC
Q 043964 615 IIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSN 685 (713)
Q Consensus 615 ~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~ 685 (713)
...+++|+.|+++++..+..++.............+++|+.|++++| .++.+| +..+++|+.|++++|
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC
Confidence 23679999999999987776654322111122446788888888887 667775 678999999999833
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=1.5e-18 Score=189.92 Aligned_cols=263 Identities=19% Similarity=0.258 Sum_probs=128.6
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
.++++.+.+.++.+..++. +..+++|++|.+.+|.+... ++ +..+++|++|++++|. +..+|. +
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------~~--~~~l~~L~~L~L~~n~------l~~~~~-~ 130 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI------TP--LANLTNLTGLTLFNNQ------ITDIDP-L 130 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC------GG--GTTCTTCCEEECCSSC------CCCCGG-G
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccC------hh--hcCCCCCCEEECCCCC------CCCChH-H
Confidence 3456666666665555443 56666666666666643211 11 5566666666666666 444443 5
Q ss_pred hccCcCCccccCCcccccccCc--------------------cccCCCCCcEEeccCccCccccchhhccCCccceeecc
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPE--------------------PLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNE 516 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~--------------------~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 516 (713)
.++++|++|++++|. +..+|. .+.++++|++|++++|. +..++. +..+++|++|+++
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 131 KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIAT 207 (466)
T ss_dssp TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECC
T ss_pred cCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEec
Confidence 666666666666665 544442 13344444444444444 333332 4445555555555
Q ss_pred CcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeee
Q 043964 517 RTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVII 596 (713)
Q Consensus 517 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 596 (713)
+|... ..+. ++.+++|++|++..+.... + ..+..+++|+.|++++|. +..++++..+++|+.|++
T Consensus 208 ~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-----------~-~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l 272 (466)
T 1o6v_A 208 NNQIS-DITP-LGILTNLDELSLNGNQLKD-----------I-GTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKL 272 (466)
T ss_dssp SSCCC-CCGG-GGGCTTCCEEECCSSCCCC-----------C-GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEEC
T ss_pred CCccc-cccc-ccccCCCCEEECCCCCccc-----------c-hhhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEEC
Confidence 44222 2221 3444555555544433221 1 123344455555554442 222333444444444444
Q ss_pred ccCccceEeCc---------------cccCCcccccCcccceeecccccccccccccccccccccccccccccccccccc
Q 043964 597 TYMISVKRVGN---------------EFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSC 661 (713)
Q Consensus 597 ~~~~~l~~~~~---------------~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 661 (713)
+++. +..++. .+.+......+++|+.|+++++. +..+.. ...+++|+.|++++|
T Consensus 273 ~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 273 GANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISP---------VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCGG---------GGGCTTCCEEECCSS
T ss_pred CCCc-cCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCchh---------hccCccCCEeECCCC
Confidence 4332 111000 00001112245556666655542 222111 236778888888877
Q ss_pred ccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 662 PKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 662 ~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
.+..++ .+..+++|+.|+++ +|.
T Consensus 342 -~l~~~~-~l~~l~~L~~L~l~-~n~ 364 (466)
T 1o6v_A 342 -KVSDVS-SLANLTNINWLSAG-HNQ 364 (466)
T ss_dssp -CCCCCG-GGTTCTTCCEEECC-SSC
T ss_pred -ccCCch-hhccCCCCCEEeCC-CCc
Confidence 556554 46677888888887 664
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=3.4e-19 Score=199.64 Aligned_cols=154 Identities=15% Similarity=0.167 Sum_probs=125.2
Q ss_pred CCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc
Q 043964 377 DKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN 455 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 455 (713)
+..++++.+.++.+... +..+..+++|++|++++|.+. ..++..|..+++|++|+|++|. +..+|+.
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~ 92 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNH------LSSLSSS 92 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSC------CCSCCHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCc------cCccCHH
Confidence 56889999988877654 456888999999999998642 2234457889999999999999 6666654
Q ss_pred -hhccCcCCccccCCcccccc--cCccccCCCCCcEEeccCccCccccc-hhhccCCccceeeccCcccCCcccccCcCC
Q 043964 456 -IEKLIHLKYLNLSCLTSIRK--LPEPLCELYNLEKLDISHCWYLKELP-EGIGKLINMKHLLNERTDSLGRMPAGIARL 531 (713)
Q Consensus 456 -i~~L~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l 531 (713)
++.+++|++|++++|. +.. .|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 9999999999999998 764 56789999999999999997677777 468999999999999997666678888888
Q ss_pred CCCCcCCceecC
Q 043964 532 TSLRTFDEFHVS 543 (713)
Q Consensus 532 ~~L~~L~~~~~~ 543 (713)
++|++|++..+.
T Consensus 172 ~~L~~L~l~~n~ 183 (549)
T 2z81_A 172 RDIHHLTLHLSE 183 (549)
T ss_dssp SEEEEEEEECSB
T ss_pred ccCceEecccCc
Confidence 888888776654
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=4.5e-19 Score=201.06 Aligned_cols=266 Identities=15% Similarity=0.080 Sum_probs=200.7
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
..+++.+.+.++....++ .+..+++|++|.+.+|.+ ..+ +. + .+++|+.|++++|.. .... .+
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l------~~l-p~-~-~l~~L~~L~l~~n~~-----~~~~--~~ 346 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL------KQF-PT-L-DLPFLKSLTLTMNKG-----SISF--KK 346 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC------SSC-CC-C-CCSSCCEEEEESCSS-----CEEC--CC
T ss_pred CCCCCEEEecCccchhhh-hccccccCCEEEcccccC------ccc-cc-C-CCCccceeeccCCcC-----ccch--hh
Confidence 456777888877776655 777788888888888864 221 22 3 788899999988853 2222 56
Q ss_pred hccCcCCccccCCccccccc---CccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCccc-ccCcCCC
Q 043964 457 EKLIHLKYLNLSCLTSIRKL---PEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMP-AGIARLT 532 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~ 532 (713)
..+++|++|++++|. +..+ |..+..+++|++|++++|. +..+|..+..+++|++|++++|......| ..++.++
T Consensus 347 ~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 347 VALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred ccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 788899999999988 6655 7788899999999999988 78888888999999999999986655555 5788899
Q ss_pred CCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCC-CCC-CCCCCCcceeeeccCccceEeCcccc
Q 043964 533 SLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQ-LPP-LGILPSLEKVIITYMISVKRVGNEFL 610 (713)
Q Consensus 533 ~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~ 610 (713)
+|+.|++..+... ...|..+..+++|+.|+|++|..... +|. ++.+++|+.|+|+++. +..+....
T Consensus 425 ~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~- 492 (606)
T 3vq2_A 425 KLLYLDISYTNTK----------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGV- 492 (606)
T ss_dssp TCCEEECTTSCCE----------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-
T ss_pred cCCEEECcCCCCC----------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhh-
Confidence 9999988876543 23577788899999999999854442 454 8889999999999875 33333222
Q ss_pred CCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCC-CccEEEEEcCCc
Q 043964 611 GIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTT-TLKELIIRSNCG 687 (713)
Q Consensus 611 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~-~L~~L~i~~~C~ 687 (713)
...+++|+.|+++++. +.... +.....+++|+.|++++| .++.+|..+..++ +|+.|+++ ++|
T Consensus 493 ----~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~-~N~ 556 (606)
T 3vq2_A 493 ----FDTLHRLQLLNMSHNN-LLFLD-------SSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLT-NNS 556 (606)
T ss_dssp ----TTTCTTCCEEECCSSC-CSCEE-------GGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECC-SCC
T ss_pred ----hcccccCCEEECCCCc-CCCcC-------HHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEcc-CCC
Confidence 2368899999999874 33321 122447899999999999 5888998888887 69999998 544
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=1.7e-18 Score=189.38 Aligned_cols=265 Identities=17% Similarity=0.179 Sum_probs=170.7
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
...++.+.+.++....++ .+..+++|++|++++|.+.. .++ +..+++|++|++++|. +..++. +
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~------~~~--~~~l~~L~~L~l~~n~------l~~~~~-~ 108 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD------ITP--LKNLTKLVDILMNNNQ------IADITP-L 108 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSC------CCCCGG-G
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC------chh--hhccccCCEEECCCCc------cccChh-h
Confidence 356788888877776644 47789999999999987432 122 7899999999999999 666666 9
Q ss_pred hccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCc
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRT 536 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 536 (713)
+++++|++|++++|. +..+|. +..+++|++|++++|. +..+|. +..+++|++|+++++ ...++. ++++++|+.
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~ 181 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLER 181 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCE
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCE
Confidence 999999999999998 888886 9999999999999997 777764 778888888877532 223332 667777777
Q ss_pred CCceecCCCCc--ccC---------CCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEe
Q 043964 537 FDEFHVSRGKA--VDG---------HKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRV 605 (713)
Q Consensus 537 L~~~~~~~~~e--i~~---------~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 605 (713)
|++..+....- +.. ..+.....+. +..+++|+.|++++| .+..++.+..+++|+.|+++++. +..+
T Consensus 182 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~ 258 (466)
T 1o6v_A 182 LDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQ-ISNL 258 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCCC
T ss_pred EECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCc-cccc
Confidence 77766543320 000 0000000111 233444555555444 22333444445555555555432 1111
Q ss_pred CccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcC
Q 043964 606 GNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSN 685 (713)
Q Consensus 606 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~ 685 (713)
.....+++|+.|.++++. +..+.. ...+++|+.|++++| .+..+|. +..+++|+.|+++ +
T Consensus 259 -------~~~~~l~~L~~L~l~~n~-l~~~~~---------~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~-~ 318 (466)
T 1o6v_A 259 -------APLSGLTKLTELKLGANQ-ISNISP---------LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLY-F 318 (466)
T ss_dssp -------GGGTTCTTCSEEECCSSC-CCCCGG---------GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECC-S
T ss_pred -------hhhhcCCCCCEEECCCCc-cCcccc---------ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECc-C
Confidence 112355666666666542 222211 336788888888887 5666654 6678889999988 6
Q ss_pred Cc
Q 043964 686 CG 687 (713)
Q Consensus 686 C~ 687 (713)
|.
T Consensus 319 n~ 320 (466)
T 1o6v_A 319 NN 320 (466)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=3.9e-18 Score=191.28 Aligned_cols=122 Identities=19% Similarity=0.191 Sum_probs=100.8
Q ss_pred EEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-Ccchhcc
Q 043964 381 CHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEKL 459 (713)
Q Consensus 381 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L 459 (713)
+.+.+.++....+|..+. ++|++|++++|.+. ..++..|..+++|++|+|++|. +..+ |..+..+
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~------~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l 99 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSIS------ELRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFN 99 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCC------CCCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTC
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCcc------ccChhhhccCCCccEEECCCCC------CCcCCHHHhCCC
Confidence 567777776666665543 89999999999753 2233448899999999999999 5565 6779999
Q ss_pred CcCCccccCCcccccccCccccCCCCCcEEeccCccCccccc--hhhccCCccceeeccCccc
Q 043964 460 IHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELP--EGIGKLINMKHLLNERTDS 520 (713)
Q Consensus 460 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~ 520 (713)
++|++|+|++|. +..+|.. .+++|++|++++|. +..+| ..++++++|++|++++|..
T Consensus 100 ~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 100 QDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp TTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcc
Confidence 999999999999 8999986 89999999999998 66654 7899999999999998853
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=199.03 Aligned_cols=284 Identities=19% Similarity=0.222 Sum_probs=198.9
Q ss_pred CCCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-C
Q 043964 376 LDKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-P 453 (713)
Q Consensus 376 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p 453 (713)
.+.+++.|.+..+.+..+ +..+.++++|++|++++|.. ...+.+..|.++++|++|+|++|. +..+ |
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N~------l~~~~p 90 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSSK------IYFLHP 90 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTCC------CCEECT
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCCc------CcccCH
Confidence 588999999999887654 56788999999999999842 223334558999999999999999 5454 7
Q ss_pred cchhccCcCCccccCCcccccccCcc--ccCCCCCcEEeccCccCcccc--chhhccCCccceeeccCcccCCcccccCc
Q 043964 454 RNIEKLIHLKYLNLSCLTSIRKLPEP--LCELYNLEKLDISHCWYLKEL--PEGIGKLINMKHLLNERTDSLGRMPAGIA 529 (713)
Q Consensus 454 ~~i~~L~~Lr~L~L~~~~~i~~lp~~--i~~L~~L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~ 529 (713)
..++++.+|++|+|++|.....+|.. +++|++|++|++++|. +..+ |..+++|++|++|++++|......|..++
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 89999999999999999833346655 8999999999999998 5544 35689999999999999966555666666
Q ss_pred CC--CCCCcCCceecCCCCcccC-------------------CCC-CCccCCcc--------------------------
Q 043964 530 RL--TSLRTFDEFHVSRGKAVDG-------------------HKG-CNNVFPNW-------------------------- 561 (713)
Q Consensus 530 ~l--~~L~~L~~~~~~~~~ei~~-------------------~~~-~~~~~p~~-------------------------- 561 (713)
.+ ++|+.|++..+.....+.. ..+ .....|.+
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 65 6777776665543221000 000 00001111
Q ss_pred ----------cc--CCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccc
Q 043964 562 ----------MM--SLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISW 628 (713)
Q Consensus 562 ----------~~--~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~ 628 (713)
+. ..++|+.|+|++|......|. ++.+++|+.|+|+++. +..+.... ...+++|++|++++
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~-----~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEA-----FYGLDNLQVLNLSY 323 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTT-----TTTCSSCCEEEEES
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHH-----hcCCCCCCEEECCC
Confidence 11 136788888888754333333 7788889999888754 33333221 23678999999987
Q ss_pred cccccccccccccccccccccccccccccccccccCCCCCC-CCCCCCCccEEEEEcCCc
Q 043964 629 MLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPD-HFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 629 ~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~i~~~C~ 687 (713)
+. +..+. +.....+++|+.|++++| .+..+|. .+..+++|+.|+++ ++.
T Consensus 324 N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls-~N~ 373 (844)
T 3j0a_A 324 NL-LGELY-------SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLR-DNA 373 (844)
T ss_dssp CC-CSCCC-------SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEE-TCC
T ss_pred CC-CCccC-------HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECC-CCC
Confidence 63 33221 122458899999999998 5676654 57789999999999 554
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=192.56 Aligned_cols=143 Identities=18% Similarity=0.144 Sum_probs=112.5
Q ss_pred EEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-Ccchhcc
Q 043964 381 CHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEKL 459 (713)
Q Consensus 381 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L 459 (713)
+.+.+.++....+|..+. ++|+.|++++|.+. ..++..|..+++|++|+|++|. +..+ |..++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l 68 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYIS------ELWTSDILSLSKLRILIISHNR------IQYLDISVFKFN 68 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCC------CCCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCccc------ccChhhccccccccEEecCCCc------cCCcChHHhhcc
Confidence 345555666666565554 89999999999743 2345568999999999999999 5555 7789999
Q ss_pred CcCCccccCCcccccccCccccCCCCCcEEeccCccCccc--cchhhccCCccceeeccCcccCCcccccCcCCCCC--C
Q 043964 460 IHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKE--LPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSL--R 535 (713)
Q Consensus 460 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L--~ 535 (713)
++|++|+|++|. +..+|.. .+++|++|++++|. +.. +|..++++++|++|++++|.... ..++.+++| +
T Consensus 69 ~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~ 141 (520)
T 2z7x_B 69 QELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNIS 141 (520)
T ss_dssp TTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEE
T ss_pred cCCCEEecCCCc-eeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch---hhccccccceee
Confidence 999999999998 8899976 89999999999998 554 67899999999999999985432 345556666 7
Q ss_pred cCCceecCC
Q 043964 536 TFDEFHVSR 544 (713)
Q Consensus 536 ~L~~~~~~~ 544 (713)
.|++..+..
T Consensus 142 ~L~l~~n~l 150 (520)
T 2z7x_B 142 KVLLVLGET 150 (520)
T ss_dssp EEEEEECTT
T ss_pred EEEeecccc
Confidence 776666543
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.1e-17 Score=182.40 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=124.2
Q ss_pred CceeEEEeCCCCcccchhhccc-CcchhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccchh-hccC
Q 043964 431 TSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPEG-IGKL 507 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L 507 (713)
++|++|+|++|. +..+ |..+.++++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|.. +..+
T Consensus 75 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 146 (452)
T 3zyi_A 75 SNTRYLNLMENN------IQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYL 146 (452)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSC
T ss_pred CCccEEECcCCc------CceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccChhhhccc
Confidence 345555555555 3333 3445555555555555555 44433 445555555555555555 4444443 4555
Q ss_pred CccceeeccCcccCCccc-ccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCC
Q 043964 508 INMKHLLNERTDSLGRMP-AGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLG 586 (713)
Q Consensus 508 ~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~ 586 (713)
++|++|++++|.. ..+| ..+.++++|+.|++..+.... ..-+..+..+++|+.|+|++| .+..+|.+.
T Consensus 147 ~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~---------~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 215 (452)
T 3zyi_A 147 SKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLE---------YISEGAFEGLFNLKYLNLGMC-NIKDMPNLT 215 (452)
T ss_dssp TTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCC---------EECTTTTTTCTTCCEEECTTS-CCSSCCCCT
T ss_pred CCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCcc---------ccChhhccCCCCCCEEECCCC-ccccccccc
Confidence 5555555555532 2333 345555555555555433221 111223456677777777777 455667777
Q ss_pred CCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCC
Q 043964 587 ILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKA 666 (713)
Q Consensus 587 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~ 666 (713)
.+++|+.|+|+++. +..+.... ...+++|+.|.++++. +..+.. .....+++|+.|++++| .+..
T Consensus 216 ~l~~L~~L~Ls~N~-l~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~ 280 (452)
T 3zyi_A 216 PLVGLEELEMSGNH-FPEIRPGS-----FHGLSSLKKLWVMNSQ-VSLIER-------NAFDGLASLVELNLAHN-NLSS 280 (452)
T ss_dssp TCTTCCEEECTTSC-CSEECGGG-----GTTCTTCCEEECTTSC-CCEECT-------TTTTTCTTCCEEECCSS-CCSC
T ss_pred ccccccEEECcCCc-CcccCccc-----ccCccCCCEEEeCCCc-CceECH-------HHhcCCCCCCEEECCCC-cCCc
Confidence 77778888777654 33332221 2256778888777643 332221 11336788888888887 6666
Q ss_pred CCCC-CCCCCCccEEEEEcCCc
Q 043964 667 LPDH-FHQTTTLKELIIRSNCG 687 (713)
Q Consensus 667 lp~~-l~~l~~L~~L~i~~~C~ 687 (713)
+|.. +..+++|+.|+++ ++|
T Consensus 281 ~~~~~~~~l~~L~~L~L~-~Np 301 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLH-HNP 301 (452)
T ss_dssp CCTTSSTTCTTCCEEECC-SSC
T ss_pred cChHHhccccCCCEEEcc-CCC
Confidence 6643 4668888888887 443
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.3e-17 Score=181.08 Aligned_cols=202 Identities=21% Similarity=0.265 Sum_probs=99.7
Q ss_pred chhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccch-hhccCCccceeeccCcccCCcccccCcCCC
Q 043964 455 NIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPE-GIGKLINMKHLLNERTDSLGRMPAGIARLT 532 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~ 532 (713)
.+.++++|++|+|++|. +..++ ..+..+++|++|+|++|. +..+|. .+..+++|++|++++|......+..+..++
T Consensus 83 ~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 160 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160 (440)
T ss_dssp TTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred HhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence 44444445555554444 33333 334444555555555444 344433 244444555555544422211122344444
Q ss_pred CCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCC
Q 043964 533 SLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGI 612 (713)
Q Consensus 533 ~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 612 (713)
+|++|++..+.... ...+..+..+++|+.|+|++| .+..+|.+..+++|+.|+|+++. +..+....
T Consensus 161 ~L~~L~l~~~~~l~---------~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--- 226 (440)
T 3zyj_A 161 SLRRLDLGELKRLS---------YISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRPGS--- 226 (440)
T ss_dssp TCCEEECCCCTTCC---------EECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECTTT---
T ss_pred ccCEeCCCCCCCcc---------eeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccChhh---
Confidence 55544444322211 111223445666666666666 44556666666666666666653 33332221
Q ss_pred cccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCC-CCCCCCccEEEEE
Q 043964 613 EIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDH-FHQTTTLKELIIR 683 (713)
Q Consensus 613 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~i~ 683 (713)
...+++|+.|.++++. +..+... ....+++|+.|+|++| .++.+|.. +..+++|+.|+++
T Consensus 227 --~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 227 --FQGLMHLQKLWMIQSQ-IQVIERN-------AFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp --TTTCTTCCEEECTTCC-CCEECTT-------SSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECC
T ss_pred --hccCccCCEEECCCCc-eeEEChh-------hhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcC
Confidence 1245666666666542 3222211 1335677777777776 55666543 4567777777776
No 48
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=195.56 Aligned_cols=170 Identities=22% Similarity=0.284 Sum_probs=131.8
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHH-HhhC-CceeEEEecccccc------
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEV-IRKF-DKILWVCVSETFEE------ 240 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~------ 240 (713)
..+|||+.+.++|.++|.... ++.++|+|+||||+||||||+.+|++.++ +.+| +.++|+++++....
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 469999999999999998542 25789999999999999999999998777 8899 58999998753110
Q ss_pred ----------------------------------------------------cccc-------------------CCC--
Q 043964 241 ----------------------------------------------------IAFH-------------------GRS-- 247 (713)
Q Consensus 241 ----------------------------------------------------~~f~-------------------~~~-- 247 (713)
..|+ +..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~ 279 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYV 279 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEE
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceE
Confidence 0000 000
Q ss_pred -----c---------------hhchHHHHHHHHHHHhcCCCCchhH----------------------------------
Q 043964 248 -----I---------------EECEKLEQIGQKIASRCKGLPLAAK---------------------------------- 273 (713)
Q Consensus 248 -----~---------------~~~~~l~~i~~~i~~~c~GlPlai~---------------------------------- 273 (713)
. .......+.+.+|+++|+|+|||++
T Consensus 280 v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~ 359 (591)
T 1z6t_A 280 VPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSY 359 (591)
T ss_dssp EECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSS
T ss_pred eecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhcccc
Confidence 0 0011224578899999999999986
Q ss_pred ----------------------HHhhhccCCCCCccChHHHHHHHHHcCccccCCCccHHHHHHHHHHHHHhCcCCcccc
Q 043964 274 ----------------------CFSYCAIFPKDFNIMKEKLITMWMAQGYFSVEQDEEVDIIGEEYFNILATHSFFQEFK 331 (713)
Q Consensus 274 ----------------------cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~e~~~~~~~~eL~~~~ll~~~~ 331 (713)
||++||+||+++.|+.+.+..+|.++ .+.++.++.+|+++||++...
T Consensus 360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEE
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEec
Confidence 99999999999999999999999653 235788999999999998543
Q ss_pred cCCCCceeEEEeChHHHHHHHHhhc
Q 043964 332 KDDDNLIVACKMHDIVHDFAQFVSQ 356 (713)
Q Consensus 332 ~~~~~~~~~~~mhdlv~dla~~i~~ 356 (713)
. +....|+||++++++++....
T Consensus 429 ~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 429 N---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp E---TTEEEEECCHHHHHHHHHHTG
T ss_pred C---CCccEEEEcHHHHHHHHhhhh
Confidence 2 334579999999999987743
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=3.5e-18 Score=176.05 Aligned_cols=224 Identities=16% Similarity=0.129 Sum_probs=175.7
Q ss_pred CCceeEEEeCCCCcccchhhcccCcc-hhccCcCCccccCCccccccc---CccccCCCCCcEEeccCccCccccchhhc
Q 043964 430 LTSLRVLNIGKWSISRWYFILEIPRN-IEKLIHLKYLNLSCLTSIRKL---PEPLCELYNLEKLDISHCWYLKELPEGIG 505 (713)
Q Consensus 430 ~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 505 (713)
.++|++|+|+++. +..+|.. +.++++|++|+|++|. +..+ |..+..+++|++|++++|. +..+|..+.
T Consensus 27 ~~~l~~L~L~~n~------l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~ 98 (306)
T 2z66_A 27 PSSATRLELESNK------LQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFL 98 (306)
T ss_dssp CTTCCEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEE
T ss_pred CCCCCEEECCCCc------cCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcC
Confidence 3689999999999 7778765 6899999999999998 7655 6678889999999999998 888999999
Q ss_pred cCCccceeeccCcccCCccc--ccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCC-CC
Q 043964 506 KLINMKHLLNERTDSLGRMP--AGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCN-QL 582 (713)
Q Consensus 506 ~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~l 582 (713)
.+++|++|++++|.. ..++ ..+..+++|++|++..+... ...|..+..+++|+.|+|++|.... .+
T Consensus 99 ~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 99 GLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR----------VAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp TCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCE----------ECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCC----------ccchhhcccCcCCCEEECCCCccccccc
Confidence 999999999999944 4444 47889999999998876543 2356677889999999999985443 34
Q ss_pred CC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccccccccccccccccccccccccccccccccccc
Q 043964 583 PP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSC 661 (713)
Q Consensus 583 ~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 661 (713)
|. +..+++|+.|+++++. +..+.... ...+++|+.|+++++. +..+... ....+++|+.|++++|
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----~~~l~~L~~L~L~~N~-l~~~~~~-------~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQ-LEQLSPTA-----FNSLSSLQVLNMSHNN-FFSLDTF-------PYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CSCCTTCTTCCEEECTTSC-CCEECTTT-----TTTCTTCCEEECTTSC-CSBCCSG-------GGTTCTTCCEEECTTS
T ss_pred hhHHhhCcCCCEEECCCCC-cCCcCHHH-----hcCCCCCCEEECCCCc-cCccChh-------hccCcccCCEeECCCC
Confidence 54 8899999999999875 44443222 2367999999998863 3333221 2347899999999999
Q ss_pred ccCCCCCCCCCCCC-CccEEEEEcCCc
Q 043964 662 PKLKALPDHFHQTT-TLKELIIRSNCG 687 (713)
Q Consensus 662 ~~L~~lp~~l~~l~-~L~~L~i~~~C~ 687 (713)
......|..+..++ +|+.|+++ +++
T Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~-~N~ 259 (306)
T 2z66_A 234 HIMTSKKQELQHFPSSLAFLNLT-QND 259 (306)
T ss_dssp CCCBCSSSSCCCCCTTCCEEECT-TCC
T ss_pred CCcccCHHHHHhhhccCCEEEcc-CCC
Confidence 65556677777774 99999998 544
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=7.7e-18 Score=182.81 Aligned_cols=220 Identities=18% Similarity=0.203 Sum_probs=110.6
Q ss_pred CCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc-
Q 043964 377 DKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR- 454 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~- 454 (713)
+.+++.+.+..+.+..+ +..+.++++|++|++++|.+. .+.+..|.++++|++|+|++|. +..+|.
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~i~~~~~~~l~~L~~L~L~~n~------l~~~~~~ 130 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR------TIEIGAFNGLANLNTLELFDNR------LTTIPNG 130 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC------EECGGGGTTCSSCCEEECCSSC------CSSCCTT
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC------ccChhhccCCccCCEEECCCCc------CCeeCHh
Confidence 44555555555554433 234455566666666555421 1122235555666666666655 444443
Q ss_pred chhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCccccch-hhccCCccceeeccCcccCCcccccCcCCC
Q 043964 455 NIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELPE-GIGKLINMKHLLNERTDSLGRMPAGIARLT 532 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~ 532 (713)
.+..+++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+..+++|++|++++| .+..+| .+..++
T Consensus 131 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~ 207 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLI 207 (440)
T ss_dssp TSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCS
T ss_pred HhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCc
Confidence 35555666666666655 555443 455566666666665544555544 2555666666666655 333444 245555
Q ss_pred CCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCccceEeCcccc
Q 043964 533 SLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITYMISVKRVGNEFL 610 (713)
Q Consensus 533 ~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~ 610 (713)
+|+.|++..+... ...|..+..+++|+.|+|++|. +..++. +..+++|+.|+|+++. +..++....
T Consensus 208 ~L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 275 (440)
T 3zyj_A 208 KLDELDLSGNHLS----------AIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLF 275 (440)
T ss_dssp SCCEEECTTSCCC----------EECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred ccCEEECCCCccC----------ccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCC-CCccChhHh
Confidence 5555555554322 1234455555666666666553 222221 5555666666665532 222222211
Q ss_pred CCcccccCcccceeeccc
Q 043964 611 GIEIIIAFPKLKSLTISW 628 (713)
Q Consensus 611 ~~~~~~~f~~L~~L~l~~ 628 (713)
..+++|+.|+|++
T Consensus 276 -----~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 276 -----TPLHHLERIHLHH 288 (440)
T ss_dssp -----SSCTTCCEEECCS
T ss_pred -----ccccCCCEEEcCC
Confidence 1345555665554
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=8e-18 Score=191.88 Aligned_cols=133 Identities=19% Similarity=0.231 Sum_probs=112.1
Q ss_pred ccCCCceEEEEEEecCCCCCC-ccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc
Q 043964 374 NSLDKKVCHLMLIIGEGASFP-VSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI 452 (713)
Q Consensus 374 ~~~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l 452 (713)
...|..+++|.+.++.+..++ ..|.++++|++|++++|.+. .+++..|.++++|++|+|++|. +..+
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~------~i~~~~f~~L~~L~~L~Ls~N~------l~~l 115 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNP------IQSL 115 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCC------CCEE
T ss_pred CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC------CcChhHhcCCCCCCEEEccCCc------CCCC
Confidence 445788999999999887664 47889999999999999742 3345558999999999999999 7777
Q ss_pred Cc-chhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCcc--ccchhhccCCccceeeccCccc
Q 043964 453 PR-NIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLK--ELPEGIGKLINMKHLLNERTDS 520 (713)
Q Consensus 453 p~-~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~ 520 (713)
|. .+.+|.+|++|+|++|. +..+|. .+++|++|++|++++|. +. .+|..++.+++|++|++++|..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccc
Confidence 75 57999999999999998 888885 58999999999999998 54 4678889999999999998843
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=6.6e-18 Score=184.01 Aligned_cols=198 Identities=20% Similarity=0.201 Sum_probs=96.7
Q ss_pred CCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc-
Q 043964 377 DKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR- 454 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~- 454 (713)
+.+++.|.+.++.+..+ +..+.++++|+.|++++|.+. .+.+..|.++++|++|+|++|. +..+|.
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~ 141 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR------QIEVGAFNGLASLNTLELFDNW------LTVIPSG 141 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSC------CSBCCTT
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC------CcChhhccCcccCCEEECCCCc------CCccChh
Confidence 44555555555544432 234455555555555555421 1122224555555555555555 334433
Q ss_pred chhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccCCcccccCcCCC
Q 043964 455 NIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSLGRMPAGIARLT 532 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~l~ 532 (713)
.+..+++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|.. +..+++|++|++++| .+..+| .+..++
T Consensus 142 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~ 218 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLV 218 (452)
T ss_dssp TSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCT
T ss_pred hhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccc
Confidence 24555555555555555 444443 3555555555555554445555442 455555555555555 233333 244555
Q ss_pred CCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccC
Q 043964 533 SLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYM 599 (713)
Q Consensus 533 ~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 599 (713)
+|+.|++..+... ...|.++..+++|+.|+|++|......+. +..+++|+.|+|+++
T Consensus 219 ~L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 219 GLEELEMSGNHFP----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp TCCEEECTTSCCS----------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccEEECcCCcCc----------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 5555555544322 12344455555555555555532222122 455555555555543
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=191.55 Aligned_cols=106 Identities=26% Similarity=0.267 Sum_probs=59.1
Q ss_pred CCceEEEEEEecCCCCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc-
Q 043964 377 DKKVCHLMLIIGEGASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR- 454 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~- 454 (713)
.++++++.+.++.+..+ +..+.++++|++|++.+|.+. ..++..|..+++|++|++++|. +..+|.
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~ 118 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------SLALGAFSGLSSLQKLVAVETN------LASLENF 118 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTSC------CCCSTTC
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC------ccCHhhhcCccccccccccccc------cccCCCc
Confidence 34566666665554433 234566667777777666431 1122335566666666666666 444433
Q ss_pred chhccCcCCccccCCcccccc--cCccccCCCCCcEEeccCcc
Q 043964 455 NIEKLIHLKYLNLSCLTSIRK--LPEPLCELYNLEKLDISHCW 495 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~ 495 (713)
.++++++|++|++++|. +.. +|..++++++|++|++++|.
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp SCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCc
Confidence 45566666666666665 442 45556666666666666554
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=2.1e-17 Score=185.01 Aligned_cols=237 Identities=19% Similarity=0.190 Sum_probs=164.8
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
+++++.|.+.++.+..++. .+++|++|++++|.+.. ++ ..+++|++|+|++|. +..+|.
T Consensus 60 ~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~------lp----~~l~~L~~L~Ls~N~------l~~l~~-- 118 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS------LP----VLPPGLLELSIFSNP------LTHLPA-- 118 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC------CC----CCCTTCCEEEECSCC------CCCCCC--
T ss_pred CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc------CC----CCCCCCCEEECcCCc------CCCCCC--
Confidence 4667777777777665544 46777777777776321 11 156777777887777 555665
Q ss_pred hccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCc
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRT 536 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 536 (713)
.+.+|++|++++|. +..+|.. +++|++|++++|. +..+|. .+.+|+.|++++| .+..+| ..+++|+.
T Consensus 119 -~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~~ 185 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQE 185 (622)
T ss_dssp -CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCE
T ss_pred -CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCC-CCCCCc---ccCCCCcE
Confidence 45677777777777 7777753 3777788887776 666665 3456777777777 445566 34577788
Q ss_pred CCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCcccc
Q 043964 537 FDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIII 616 (713)
Q Consensus 537 L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 616 (713)
|++..+.... +|.. +++|+.|++++| .+..+|.. +++|+.|+|+++. +..++ .
T Consensus 186 L~Ls~N~l~~-----------l~~~---~~~L~~L~L~~N-~l~~l~~~--~~~L~~L~Ls~N~-L~~lp---------~ 238 (622)
T 3g06_A 186 LSVSDNQLAS-----------LPTL---PSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLP---------V 238 (622)
T ss_dssp EECCSSCCSC-----------CCCC---CTTCCEEECCSS-CCSSCCCC--CTTCCEEECCSSC-CSCCC---------C
T ss_pred EECCCCCCCC-----------CCCc---cchhhEEECcCC-cccccCCC--CCCCCEEEccCCc-cCcCC---------C
Confidence 8777665432 4443 578888888887 45566643 5889999998753 33322 2
Q ss_pred cCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCch
Q 043964 617 AFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCGL 688 (713)
Q Consensus 617 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~~ 688 (713)
.+++|+.|+++++ .+..++. .+++|+.|++++| .++.+|..+..+++|+.|+++ +++-
T Consensus 239 ~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~-~N~l 296 (622)
T 3g06_A 239 LPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE-GNPL 296 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC-SCCC
T ss_pred CCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEec-CCCC
Confidence 5789999999885 4444332 5689999999998 778999989999999999999 6653
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=194.00 Aligned_cols=279 Identities=14% Similarity=0.146 Sum_probs=199.8
Q ss_pred CCceEEEEEEecCC-CCC-CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc
Q 043964 377 DKKVCHLMLIIGEG-ASF-PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR 454 (713)
Q Consensus 377 ~~~~r~lsl~~~~~-~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 454 (713)
..+++.|.+.++.. ..+ +..+.++++|++|++++|.+. ...+..|.++++|++|+|++|.+. ...|.
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~------~~~p~~~~~l~~L~~L~Ls~n~l~-----~~~~~ 115 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY------FLHPDAFQGLFHLFELRLYFCGLS-----DAVLK 115 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC------EECTTSSCSCSSCCCEECTTCCCS-----SCCST
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc------ccCHhHccCCcccCEeeCcCCCCC-----ccccc
Confidence 46788888877733 233 567889999999999998742 223445889999999999999942 23455
Q ss_pred c--hhccCcCCccccCCcccccccC--ccccCCCCCcEEeccCccCccccchhhccC--CccceeeccCcccCCcccccC
Q 043964 455 N--IEKLIHLKYLNLSCLTSIRKLP--EPLCELYNLEKLDISHCWYLKELPEGIGKL--INMKHLLNERTDSLGRMPAGI 528 (713)
Q Consensus 455 ~--i~~L~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L--~~L~~L~l~~~~~l~~~p~~i 528 (713)
. ++++++|++|+|++|. +..++ ..++++++|++|++++|......|..+..+ ++|+.|++++|......|..+
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp TCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred CccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccch
Confidence 4 8999999999999998 66553 579999999999999998545566777777 889999999887766677666
Q ss_pred cCCCC------CCcCCceecCCCCcc------------------c----------------------C-----------C
Q 043964 529 ARLTS------LRTFDEFHVSRGKAV------------------D----------------------G-----------H 551 (713)
Q Consensus 529 ~~l~~------L~~L~~~~~~~~~ei------------------~----------------------~-----------~ 551 (713)
+.+++ |+.|++..+....++ . + .
T Consensus 195 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence 66555 788777765321100 0 0 0
Q ss_pred CC-CCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccc
Q 043964 552 KG-CNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWM 629 (713)
Q Consensus 552 ~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~ 629 (713)
.+ .....|.++..+++|+.|+|++|......|. ++.+++|+.|+|+++. +..+... ....+++|+.|+++++
T Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSS-----NFYGLPKVAYIDLQKN 348 (844)
T ss_dssp TCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSC-----SCSSCTTCCEEECCSC
T ss_pred CCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHH-----HhcCCCCCCEEECCCC
Confidence 00 1122466777899999999999954444443 8899999999999864 3222211 2237899999999976
Q ss_pred ccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 630 LELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 630 ~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
.+..+.. .....+++|+.|++++| .++.++. +++|+.|+++ ++.
T Consensus 349 -~i~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~-~N~ 392 (844)
T 3j0a_A 349 -HIAIIQD-------QTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFLS-GNK 392 (844)
T ss_dssp -CCCCCCS-------SCSCSCCCCCEEEEETC-CSCCCSS----CCSCSEEEEE-SCC
T ss_pred -CCCccCh-------hhhcCCCCCCEEECCCC-CCCcccC----CCCcchhccC-CCC
Confidence 3433332 12447899999999998 5666654 7889999998 554
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=3.9e-19 Score=184.05 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=6.8
Q ss_pred HccCCceeEEEeCCCC
Q 043964 427 FEKLTSLRVLNIGKWS 442 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~ 442 (713)
|..+++|++|+|++|.
T Consensus 54 ~~~l~~L~~L~Ls~n~ 69 (317)
T 3o53_A 54 LAPFTKLELLNLSSNV 69 (317)
T ss_dssp HTTCTTCCEEECTTSC
T ss_pred hhCCCcCCEEECCCCc
Confidence 3444444444444444
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=3.2e-17 Score=188.42 Aligned_cols=144 Identities=18% Similarity=0.146 Sum_probs=116.7
Q ss_pred EecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-CcchhccCcCCc
Q 043964 386 IIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLKY 464 (713)
Q Consensus 386 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~ 464 (713)
.+.....+|..+. +++++|++++|.+.. .++..|.++++|++|+|++|. +..+ |..++++++|++
T Consensus 12 s~~~L~~ip~~~~--~~l~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 12 SHLKLTQVPDDLP--TNITVLNLTHNQLRR------LPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKV 77 (680)
T ss_dssp CSSCCSSCCSCSC--TTCSEEECCSSCCCC------CCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCE
T ss_pred CCCCccccccccC--CCCcEEECCCCCCCC------cCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCE
Confidence 3334444454443 789999999987432 234448899999999999999 4444 677999999999
Q ss_pred cccCCcccccccCc-cccCCCCCcEEeccCccCccccc-hhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceec
Q 043964 465 LNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELP-EGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHV 542 (713)
Q Consensus 465 L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 542 (713)
|+|++|. +..+|. .++++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++..+
T Consensus 78 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 78 LNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred EECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 9999998 888886 59999999999999998 66666 56999999999999999766666778899999999999877
Q ss_pred CCC
Q 043964 543 SRG 545 (713)
Q Consensus 543 ~~~ 545 (713)
...
T Consensus 156 ~l~ 158 (680)
T 1ziw_A 156 KIQ 158 (680)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=1.8e-17 Score=185.56 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=80.4
Q ss_pred CCceEEEEEEecCCCCCC-ccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc
Q 043964 377 DKKVCHLMLIIGEGASFP-VSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN 455 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 455 (713)
..+++.+.+.++.+...+ ..+..+++|++|++++|.+. ..++..|..+++|++|+|++|.+.+ ...|..
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~ 118 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS------SLSSSWFGPLSSLKYLNLMGNPYQT----LGVTSL 118 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC------SCCHHHHTTCTTCCEEECTTCCCSS----SCSSCS
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccC------ccCHHHhccCCCCcEEECCCCcccc----cchhhh
Confidence 456788888777766543 46778889999999888642 2345557888899999999888321 134566
Q ss_pred hhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccchhhc
Q 043964 456 IEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPEGIG 505 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 505 (713)
++++++|++|++++|..+..+| ..+..+++|++|++++|......|..+.
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 7777788888887776556665 4567777777777776663333444443
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=6e-18 Score=172.37 Aligned_cols=202 Identities=18% Similarity=0.159 Sum_probs=126.8
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-CcchhccCcCCccccCCccccccc-C
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLKYLNLSCLTSIRKL-P 477 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~l-p 477 (713)
.++|+.|.+.++.+. .+++..|..+++|++|+|++|. +..+ |..+..+++|++|++++|..+..+ |
T Consensus 31 ~~~l~~L~l~~n~i~------~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS------HVPAASFRACRNLTILWLHSNV------LARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CTTCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCCceEEEeeCCcCC------ccCHHHcccCCCCCEEECCCCc------cceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 457777777777532 2223336677778888887777 4444 566777778888888777545555 5
Q ss_pred ccccCCCCCcEEeccCccCcccc-chhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCc
Q 043964 478 EPLCELYNLEKLDISHCWYLKEL-PEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNN 556 (713)
Q Consensus 478 ~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~ 556 (713)
..+..+++|++|++++|. +..+ |..+.++++|++|++++|......+..++.+++|++|++..+....
T Consensus 99 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------- 167 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS---------- 167 (285)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE----------
T ss_pred HHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc----------
Confidence 667777788888888777 4444 4557777788888887774333333446777777777776654331
Q ss_pred cCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccc
Q 043964 557 VFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWML 630 (713)
Q Consensus 557 ~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 630 (713)
..+.++..+++|+.|+|++|......|. ++.+++|+.|+++++. +..++... ...+++|+.|++++.+
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEA-----LAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHH-----HTTCTTCCEEECCSSC
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHH-----cccCcccCEEeccCCC
Confidence 1223466677777887777743333333 6777777777777653 22222111 2256777777776643
No 60
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.72 E-value=2.2e-18 Score=146.73 Aligned_cols=81 Identities=27% Similarity=0.498 Sum_probs=76.4
Q ss_pred hhHHHHHHHHhccchHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhc--cccchHHHHHHHHHHHHHHhhHhHHH
Q 043964 4 AVVSPLLEQLISFSTEEVTQQVKLVKGVEQEVEKLTSHLQTIQAVLNDAEQR--QVKEKSIRVWLGRLKDVSYDIENVLD 81 (713)
Q Consensus 4 ~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~Wl~~l~~~~~d~ed~ld 81 (713)
|+|+++++||++ ++.+|+..+.|+++++++|+++|++|+++|.||+.+ +.+++.++.|+++||++|||+||+||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999 999999999999999999999999999999999987 56789999999999999999999999
Q ss_pred HHHHHHH
Q 043964 82 EWITARR 88 (713)
Q Consensus 82 ~~~~~~~ 88 (713)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998773
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=1.5e-17 Score=172.14 Aligned_cols=224 Identities=18% Similarity=0.193 Sum_probs=172.2
Q ss_pred hhHHHHHHccCCceeEEEeCCCCcccchhhcccC-cchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCcc
Q 043964 420 GKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-RNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLK 498 (713)
Q Consensus 420 ~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~ 498 (713)
...+...+..+++|++|+|++|. +..++ ..+..+++|++|+|++|. +..++. +..+++|++|++++|. +.
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~ 93 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQ 93 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSC------CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EE
T ss_pred hhhHHHHhccCCCCCEEECcCCc------cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-cc
Confidence 44466777888899999999999 55554 689999999999999999 777765 9999999999999998 77
Q ss_pred ccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCC
Q 043964 499 ELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCEN 578 (713)
Q Consensus 499 ~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 578 (713)
.+|. +++|++|++++|. +..++.. .+++|++|++..+.... ..|.++..+++|+.|+|++|..
T Consensus 94 ~l~~----~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~----------~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 94 ELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITM----------LRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp EEEE----CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCS----------GGGBCTGGGSSEEEEECTTSCC
T ss_pred cccC----CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCC----------ccchhhhccCCCCEEECCCCCC
Confidence 7663 4899999999994 4444432 47889999988876542 2345677889999999999854
Q ss_pred CCCCCC-C-CCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccc
Q 043964 579 CNQLPP-L-GILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSL 656 (713)
Q Consensus 579 ~~~l~~-l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L 656 (713)
....+. + ..+++|+.|+++++. +..++. ...+++|+.|+++++ .+..++.. ...+++|+.|
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~l~~L~~L~Ls~N-~l~~l~~~--------~~~l~~L~~L 219 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------QVVFAKLKTLDLSSN-KLAFMGPE--------FQSAAGVTWI 219 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------CCCCTTCCEEECCSS-CCCEECGG--------GGGGTTCSEE
T ss_pred CcccHHHHhhccCcCCEEECCCCc-Cccccc-------ccccccCCEEECCCC-cCCcchhh--------hcccCcccEE
Confidence 332222 3 468999999999865 333321 125789999999976 34444333 3378999999
Q ss_pred cccccccCCCCCCCCCCCCCccEEEEEcCCch
Q 043964 657 TIDSCPKLKALPDHFHQTTTLKELIIRSNCGL 688 (713)
Q Consensus 657 ~l~~c~~L~~lp~~l~~l~~L~~L~i~~~C~~ 688 (713)
++++| .++.+|..+..+++|+.|+++ +++-
T Consensus 220 ~L~~N-~l~~l~~~~~~l~~L~~L~l~-~N~~ 249 (317)
T 3o53_A 220 SLRNN-KLVLIEKALRFSQNLEHFDLR-GNGF 249 (317)
T ss_dssp ECTTS-CCCEECTTCCCCTTCCEEECT-TCCC
T ss_pred ECcCC-cccchhhHhhcCCCCCEEEcc-CCCc
Confidence 99998 778899888899999999998 5553
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.6e-17 Score=182.05 Aligned_cols=166 Identities=14% Similarity=0.084 Sum_probs=80.8
Q ss_pred ceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCcccc
Q 043964 402 RMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLC 481 (713)
Q Consensus 402 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~ 481 (713)
+|++|++++|.+.. .++..|..+++|++|+|++|. +...++ ++.+++|++|+|++|. +..+|.
T Consensus 35 ~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~------l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~--- 97 (487)
T 3oja_A 35 NVKELDLSGNPLSQ------ISAADLAPFTKLELLNLSSNV------LYETLD-LESLSTLRTLDLNNNY-VQELLV--- 97 (487)
T ss_dssp GCCEEECCSSCCCC------CCGGGGTTCTTCCEEECTTSC------CEEEEE-CTTCTTCCEEECCSSE-EEEEEE---
T ss_pred CccEEEeeCCcCCC------CCHHHHhCCCCCCEEEeeCCC------CCCCcc-cccCCCCCEEEecCCc-CCCCCC---
Confidence 55555555554321 122234555555555555555 333322 5555555555555555 554442
Q ss_pred CCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCcc
Q 043964 482 ELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNW 561 (713)
Q Consensus 482 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~ 561 (713)
.++|++|++++|. +..+|. ..+++|++|++++|......|..++.+++|+.|++..+... ...|.+
T Consensus 98 -~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~ 163 (487)
T 3oja_A 98 -GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID----------TVNFAE 163 (487)
T ss_dssp -CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC----------EEEGGG
T ss_pred -CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC----------CcChHH
Confidence 2555555555555 444443 23455555555555433333445555555555555544322 112333
Q ss_pred cc-CCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccC
Q 043964 562 MM-SLTNPRSLELILCENCNQLPPLGILPSLEKVIITYM 599 (713)
Q Consensus 562 ~~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 599 (713)
+. .+++|+.|+|++|. +..+|....+++|+.|+|+++
T Consensus 164 l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN 201 (487)
T ss_dssp GGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSS
T ss_pred HhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCC
Confidence 32 45555555555552 333344444555555555543
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.3e-18 Score=188.72 Aligned_cols=185 Identities=13% Similarity=0.069 Sum_probs=82.5
Q ss_pred ceEEEEEEecCCCCCC-ccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchh
Q 043964 379 KVCHLMLIIGEGASFP-VSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIE 457 (713)
Q Consensus 379 ~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 457 (713)
+++.|.+.++.+..++ ..+..+++|++|++++|.+.. . ++ +..+++|++|+|++|. +..+|.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~-~~--l~~l~~L~~L~Ls~N~------l~~l~~--- 97 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----T-LD--LESLSTLRTLDLNNNY------VQELLV--- 97 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-----E-EE--CTTCTTCCEEECCSSE------EEEEEE---
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-----C-cc--cccCCCCCEEEecCCc------CCCCCC---
Confidence 4555555554444332 244455555555555553211 0 11 4445555555555554 333322
Q ss_pred ccCcCCccccCCcccccccCccccCCCCCcEEeccCccCcccc-chhhccCCccceeeccCcccCCcccccCc-CCCCCC
Q 043964 458 KLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKEL-PEGIGKLINMKHLLNERTDSLGRMPAGIA-RLTSLR 535 (713)
Q Consensus 458 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~-~l~~L~ 535 (713)
.++|++|++++|. +..+|. ..+++|++|++++|. +..+ |..++.+++|++|++++|......|..+. .+++|+
T Consensus 98 -~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 -GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp -CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred -CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 1445555555554 444432 134455555555554 3222 33445555555555555533333333333 455555
Q ss_pred cCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeecc
Q 043964 536 TFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITY 598 (713)
Q Consensus 536 ~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 598 (713)
+|++..+.... +|.. ..+++|+.|+|++|. +..+|+ ++.+++|+.|+|++
T Consensus 173 ~L~Ls~N~l~~-----------~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 173 HLNLQYNFIYD-----------VKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp EEECTTSCCCE-----------EECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTT
T ss_pred EEecCCCcccc-----------cccc-ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecC
Confidence 55554443221 1111 134555555555552 222322 44455555555554
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=1.3e-16 Score=162.35 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=88.6
Q ss_pred CCceeEEEeCCCCcccchhhcccC-cchhccCcCCccccCCccccccc-CccccCCCCCcEEeccCccCcccc-chhhcc
Q 043964 430 LTSLRVLNIGKWSISRWYFILEIP-RNIEKLIHLKYLNLSCLTSIRKL-PEPLCELYNLEKLDISHCWYLKEL-PEGIGK 506 (713)
Q Consensus 430 ~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~ 506 (713)
.++|++|+++++. +..+| ..+..+++|++|++++|. +..+ |..+..+++|++|++++|..+..+ |..+..
T Consensus 31 ~~~l~~L~l~~n~------i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNR------ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CTTCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCceEEEeeCCc------CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 4567777777777 44444 356677777777777776 5554 556777777777777777535555 455667
Q ss_pred CCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--
Q 043964 507 LINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-- 584 (713)
Q Consensus 507 L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-- 584 (713)
+++|++|++++|......|..++.+++|++|++..+.... ..+..+..+++|+.|+|++| .+..+|.
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 172 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA----------LPDDTFRDLGNLTHLFLHGN-RISSVPERA 172 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------CCTTTTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc----------cCHhHhccCCCccEEECCCC-cccccCHHH
Confidence 7777777777764433334555666666666655543321 11223445566666666655 2333332
Q ss_pred CCCCCCcceeeeccC
Q 043964 585 LGILPSLEKVIITYM 599 (713)
Q Consensus 585 l~~l~~L~~L~L~~~ 599 (713)
+..+++|+.|+++++
T Consensus 173 ~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQN 187 (285)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hcCccccCEEECCCC
Confidence 455555555555543
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=5.8e-18 Score=178.19 Aligned_cols=253 Identities=16% Similarity=0.177 Sum_probs=187.9
Q ss_pred CCCceEEEEEEecCCCCCCc-cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc
Q 043964 376 LDKKVCHLMLIIGEGASFPV-STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR 454 (713)
Q Consensus 376 ~~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 454 (713)
.++.++.+.+.++.+..++. .+.++++|++|.+++|.+. ...+..|..+++|++|+|++|. +..+|.
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~ 117 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHLDLSYNY------LSNLSS 117 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSC------CSSCCH
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC------ccCHhhcCCCCCCCEEECCCCc------CCcCCH
Confidence 35689999998888776554 6888999999999998643 2233447889999999999999 667776
Q ss_pred c-hhccCcCCccccCCcccccccCc--cccCCCCCcEEeccCccCccccc-hhhccCCccceeeccCcccCCcccccCcC
Q 043964 455 N-IEKLIHLKYLNLSCLTSIRKLPE--PLCELYNLEKLDISHCWYLKELP-EGIGKLINMKHLLNERTDSLGRMPAGIAR 530 (713)
Q Consensus 455 ~-i~~L~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~ 530 (713)
. ++.+++|++|++++|. +..+|. .+..+++|++|++++|..+..+| ..+..+++|++|++++|......|..++.
T Consensus 118 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 5 8899999999999998 889987 78999999999999996566664 56899999999999999766666889999
Q ss_pred CCCCCcCCceecCCCCcccCCCCCCccCCcc-ccCCCCCcEEEeccCCCCC----CCCCCCCCCCcceeeeccCccceEe
Q 043964 531 LTSLRTFDEFHVSRGKAVDGHKGCNNVFPNW-MMSLTNPRSLELILCENCN----QLPPLGILPSLEKVIITYMISVKRV 605 (713)
Q Consensus 531 l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~----~l~~l~~l~~L~~L~L~~~~~l~~~ 605 (713)
+++|++|++..+.... +|.. +..+++|+.|+|++|.... .++....++.++.++++++. +.
T Consensus 197 l~~L~~L~l~~n~l~~-----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~-- 262 (353)
T 2z80_A 197 IQNVSHLILHMKQHIL-----------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-IT-- 262 (353)
T ss_dssp CSEEEEEEEECSCSTT-----------HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CC--
T ss_pred cccCCeecCCCCcccc-----------chhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-cc--
Confidence 9999999998876432 4443 3358999999999985322 22223456778888887642 11
Q ss_pred CccccC-CcccccCcccceeecccccccccccccccccccccccccccccccccccccc
Q 043964 606 GNEFLG-IEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPK 663 (713)
Q Consensus 606 ~~~~~~-~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 663 (713)
+..+.. ......+++|+.|+++++ .+..++... ...+++|++|++++|+-
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~-------~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI-------FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT-------TTTCTTCCEEECCSSCB
T ss_pred CcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH-------HhcCCCCCEEEeeCCCc
Confidence 110000 011236889999999886 455444321 24789999999999853
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=2.9e-16 Score=161.55 Aligned_cols=191 Identities=16% Similarity=0.251 Sum_probs=128.8
Q ss_pred ccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccccccc
Q 043964 397 TCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKL 476 (713)
Q Consensus 397 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~l 476 (713)
...+++|++|.+.++.+.. ++. +..+++|++|+|++|. +..++. +..+++|++|++++|. +..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-------l~~-~~~l~~L~~L~L~~n~------i~~~~~-~~~l~~L~~L~L~~n~-l~~~ 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-------IEG-VQYLNNLIGLELKDNQ------ITDLAP-LKNLTKITELELSGNP-LKNV 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECCSSC------CCCCGG-GTTCCSCCEEECCSCC-CSCC
T ss_pred HHHcCCcCEEEeeCCCccC-------chh-hhccCCCCEEEccCCc------CCCChh-HccCCCCCEEEccCCc-CCCc
Confidence 3456788888888775422 111 6677888888888887 556665 7788888888888887 7777
Q ss_pred CccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCc
Q 043964 477 PEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNN 556 (713)
Q Consensus 477 p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~ 556 (713)
| .+..+++|++|++++|. +..+|. +..+++|++|++++| .+..++. ++.+++|+.|++..+....
T Consensus 101 ~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~---------- 165 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSD---------- 165 (308)
T ss_dssp G-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCC----------
T ss_pred h-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCC----------
Confidence 6 47788888888888887 666665 778888888888887 3444444 6677777777776664432
Q ss_pred cCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccc
Q 043964 557 VFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWM 629 (713)
Q Consensus 557 ~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~ 629 (713)
+|. +..+++|+.|+|++| .+..++.+..+++|+.|+++++. +..+. ....+++|+.|+++++
T Consensus 166 -~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l~~~~-------~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 166 -LTP-LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVS-------PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp -CGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCG-------GGTTCTTCCEEEEEEE
T ss_pred -Chh-hcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc-cCccc-------cccCCCCCCEEEccCC
Confidence 333 566777777777777 44555556777777777777653 22211 1235667777776654
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=6.8e-18 Score=174.24 Aligned_cols=243 Identities=16% Similarity=0.150 Sum_probs=152.2
Q ss_pred CCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchh-------ccCcCCccccCCcc
Q 043964 399 RVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIE-------KLIHLKYLNLSCLT 471 (713)
Q Consensus 399 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~-------~L~~Lr~L~L~~~~ 471 (713)
..++|+.|.+.+|.+ .++..+... |++|+|+++.+.. ..+|..+. ++.+|++|+|++|.
T Consensus 41 ~~~~L~~l~l~~n~l-------~~p~~~~~~---L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-------ADLGQFTDI---IKSLSLKRLTVRA----ARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEECTTHHHHCCTT-------CCCHHHHHH---HHHCCCCEEEEEE----EECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred cCCCceeEeeccccc-------ccHHHHHHH---HhhcccccccccC----CCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 345666666666653 112222221 6777777776321 13455554 67788888888887
Q ss_pred cccccCccc--cCCCCCcEEeccCccCccccchhhccC-----CccceeeccCcccCCcccccCcCCCCCCcCCceecCC
Q 043964 472 SIRKLPEPL--CELYNLEKLDISHCWYLKELPEGIGKL-----INMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSR 544 (713)
Q Consensus 472 ~i~~lp~~i--~~L~~L~~L~l~~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 544 (713)
....+|..+ +.+++|++|++++|. +..+|..+..+ ++|++|++++|......|..++.+++|++|++..+..
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 223677665 778888888888877 65567767666 7888888888755444446777888888888776653
Q ss_pred CCcccCCCCCCccCCccc--cCCCCCcEEEeccCCCCCCCCC-----CCCCCCcceeeeccCccceEeCccccCCccccc
Q 043964 545 GKAVDGHKGCNNVFPNWM--MSLTNPRSLELILCENCNQLPP-----LGILPSLEKVIITYMISVKRVGNEFLGIEIIIA 617 (713)
Q Consensus 545 ~~ei~~~~~~~~~~p~~~--~~l~~L~~L~L~~~~~~~~l~~-----l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 617 (713)
... ..+|..+ ..+++|+.|+|++|. +..++. +..+++|+.|+++++. +..... ......
T Consensus 186 ~~~--------~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~~~ 251 (312)
T 1wwl_A 186 LGE--------RGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAG----APSCDW 251 (312)
T ss_dssp CHH--------HHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCC----CSCCCC
T ss_pred Ccc--------hHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccc----hhhhhh
Confidence 210 0123333 567888888888873 332221 2456788888887653 221110 011124
Q ss_pred CcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCCCccEEEEE
Q 043964 618 FPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIR 683 (713)
Q Consensus 618 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~ 683 (713)
+++|+.|+++++. ++.++.. .+++|+.|++++| .++.+|. +..+++|++|+++
T Consensus 252 l~~L~~L~Ls~N~-l~~ip~~----------~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 252 PSQLNSLNLSFTG-LKQVPKG----------LPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLK 304 (312)
T ss_dssp CTTCCEEECTTSC-CSSCCSS----------CCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECT
T ss_pred cCCCCEEECCCCc-cChhhhh----------ccCCceEEECCCC-CCCCChh-HhhCCCCCEEecc
Confidence 5788888887753 4433221 2278999999988 6777887 7888999999998
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=6.9e-16 Score=155.79 Aligned_cols=185 Identities=21% Similarity=0.186 Sum_probs=84.7
Q ss_pred hhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccCCcccccCcCCCCC
Q 043964 456 IEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSLGRMPAGIARLTSL 534 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L 534 (713)
+..+++|++|++++|. +..++ .++.+++|++|++++|. +..+|.. +..+++|++|++++|......|..++.+++|
T Consensus 59 l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 4444444444444444 43333 34444444444444444 3333332 3444444444444442222222223444444
Q ss_pred CcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCccceEeCccccCC
Q 043964 535 RTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITYMISVKRVGNEFLGI 612 (713)
Q Consensus 535 ~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 612 (713)
++|++..+.... ..|.++..+++|+.|+|++|. +..++. ++.+++|+.|+++++. +..+....
T Consensus 136 ~~L~L~~n~l~~----------~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~--- 200 (272)
T 3rfs_A 136 TYLNLAHNQLQS----------LPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGV--- 200 (272)
T ss_dssp CEEECCSSCCCC----------CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---
T ss_pred CEEECCCCccCc----------cCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCHHH---
Confidence 444444433221 112233455556666666552 333333 4556666666665543 22221111
Q ss_pred cccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCCCCCCC
Q 043964 613 EIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTT 675 (713)
Q Consensus 613 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~ 675 (713)
...+++|+.|++++++- ...+|+|+.|.+..+.....+|..+..++
T Consensus 201 --~~~l~~L~~L~l~~N~~---------------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 201 --FDRLTSLQYIWLHDNPW---------------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp --TTTCTTCCEEECCSSCB---------------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred --HhCCcCCCEEEccCCCc---------------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 12456666666655420 11466677777776655556676655443
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=2e-16 Score=171.60 Aligned_cols=250 Identities=18% Similarity=0.192 Sum_probs=119.0
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCC-------------ceeEEEeCCCCc
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLT-------------SLRVLNIGKWSI 443 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-------------~Lr~L~L~~~~~ 443 (713)
...++.+.+.++....+|..+.++++|++|.+++|.+ .+. .+..+..++ .++.|+++++.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~-----~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~- 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW-----ERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLG- 82 (454)
T ss_dssp ------------------------CCHHHHHHHHHHH-----HHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcc-----ccc-CCcccccchhcchhhhhhhhccCCCEEEecCCc-
Confidence 3456777777777777788888888888888887642 111 111133333 35778888877
Q ss_pred ccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCc
Q 043964 444 SRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGR 523 (713)
Q Consensus 444 ~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~ 523 (713)
+..+|.. .++|++|++++|. +..+|.. +.+|++|++++|. +..+|.. .++|++|++++|. +..
T Consensus 83 -----l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~-l~~ 145 (454)
T 1jl5_A 83 -----LSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQ-LEK 145 (454)
T ss_dssp -----CSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSC-CSS
T ss_pred -----cccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCC-CCC
Confidence 4455542 2567777777776 6667653 3567777777765 5555432 1567777777663 344
Q ss_pred ccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccce
Q 043964 524 MPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVK 603 (713)
Q Consensus 524 ~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~ 603 (713)
+| .++.+++|++|++..+.... +|.+ .++|+.|++++| .+..+|.++.+++|+.|+++++. +.
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-----------lp~~---~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~ 208 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-----------LPDL---PPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LK 208 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-----------CCCC---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CS
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-----------cCCC---cccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CC
Confidence 66 46667777777666654321 3332 235555555555 33334555555555555555432 11
Q ss_pred EeCc-------------cccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCCCC
Q 043964 604 RVGN-------------EFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPDH 670 (713)
Q Consensus 604 ~~~~-------------~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~ 670 (713)
.++. .+........+++|++|+++++ .+..++ ..+++|+.|++++| .+..+|..
T Consensus 209 ~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~l~-----------~~~~~L~~L~l~~N-~l~~l~~~ 275 (454)
T 1jl5_A 209 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN-LLKTLP-----------DLPPSLEALNVRDN-YLTDLPEL 275 (454)
T ss_dssp SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSSCC-----------SCCTTCCEEECCSS-CCSCCCCC
T ss_pred cCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC-cCCccc-----------ccccccCEEECCCC-cccccCcc
Confidence 1000 0000001224555666665543 122211 13456677777666 45556543
Q ss_pred CCCCCCccEEEEE
Q 043964 671 FHQTTTLKELIIR 683 (713)
Q Consensus 671 l~~l~~L~~L~i~ 683 (713)
+++|+.|+++
T Consensus 276 ---~~~L~~L~ls 285 (454)
T 1jl5_A 276 ---PQSLTFLDVS 285 (454)
T ss_dssp ---CTTCCEEECC
T ss_pred ---cCcCCEEECc
Confidence 3566667766
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=6.2e-16 Score=152.95 Aligned_cols=198 Identities=19% Similarity=0.187 Sum_probs=113.3
Q ss_pred ceeEEEeCCCCcccchhhcccCc-chhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCccccch-hhccCC
Q 043964 432 SLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELPE-GIGKLI 508 (713)
Q Consensus 432 ~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~ 508 (713)
.|++|+++++. +..+|. .+..+++|++|++++|..++.+|. .+..+++|++|++++|..+..+|. .+..++
T Consensus 32 ~l~~L~l~~n~------l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIETH------LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESCC------CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEeCCc------ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 55566666555 444443 455555666666655532444443 455555666666655222444443 345555
Q ss_pred ccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCc---EEEeccCCCCCCCCC-
Q 043964 509 NMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPR---SLELILCENCNQLPP- 584 (713)
Q Consensus 509 ~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~---~L~L~~~~~~~~l~~- 584 (713)
+|++|++++|. +..+| . +..+++|+ .|++++|..+..+|.
T Consensus 106 ~L~~L~l~~n~-l~~lp----------------------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~ 149 (239)
T 2xwt_C 106 LLKFLGIFNTG-LKMFP----------------------------------D-LTKVYSTDIFFILEITDNPYMTSIPVN 149 (239)
T ss_dssp TCCEEEEEEEC-CCSCC----------------------------------C-CTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred CCCEEeCCCCC-Ccccc----------------------------------c-cccccccccccEEECCCCcchhhcCcc
Confidence 55555555552 22233 2 33344444 777777755555554
Q ss_pred -CCCCCCcc-eeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccccccccccccc-ccccccccccc
Q 043964 585 -LGILPSLE-KVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIM-PRLSSLTIDSC 661 (713)
Q Consensus 585 -l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-p~L~~L~l~~c 661 (713)
+..+++|+ .|+++++. +..++...+. . ++|+.|++++++.++.++... ...+ ++|+.|+++++
T Consensus 150 ~~~~l~~L~~~L~l~~n~-l~~i~~~~~~-----~-~~L~~L~L~~n~~l~~i~~~~-------~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNG-FTSVQGYAFN-----G-TKLDAVYLNKNKYLTVIDKDA-------FGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TTTTTBSSEEEEECCSCC-CCEECTTTTT-----T-CEEEEEECTTCTTCCEECTTT-------TTTCSBCCSEEECTTC
T ss_pred cccchhcceeEEEcCCCC-CcccCHhhcC-----C-CCCCEEEcCCCCCcccCCHHH-------hhccccCCcEEECCCC
Confidence 66777777 77777643 3444433221 2 678888888765565554321 2356 88999999987
Q ss_pred ccCCCCCCCCCCCCCccEEEEEcCCchh
Q 043964 662 PKLKALPDHFHQTTTLKELIIRSNCGLL 689 (713)
Q Consensus 662 ~~L~~lp~~l~~l~~L~~L~i~~~C~~l 689 (713)
.++.+|.. .+++|+.|++. +|..+
T Consensus 216 -~l~~l~~~--~~~~L~~L~l~-~~~~l 239 (239)
T 2xwt_C 216 -SVTALPSK--GLEHLKELIAR-NTWTL 239 (239)
T ss_dssp -CCCCCCCT--TCTTCSEEECT-TC---
T ss_pred -ccccCChh--HhccCceeecc-CccCC
Confidence 67788874 67899999988 77653
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.3e-15 Score=155.09 Aligned_cols=79 Identities=23% Similarity=0.183 Sum_probs=42.4
Q ss_pred CceeEEEeCCCCcccchhhccc-CcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCc
Q 043964 431 TSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLIN 509 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 509 (713)
+.|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|.. +.+++|++|++++|. +..+|..+..+++
T Consensus 31 ~~l~~L~L~~N~------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENL------LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSC------CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTT
T ss_pred CCCCEEEcCCCc------CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCC
Confidence 355555555555 2232 3345555555555555555 5555442 455555555555554 5555555555555
Q ss_pred cceeeccCc
Q 043964 510 MKHLLNERT 518 (713)
Q Consensus 510 L~~L~l~~~ 518 (713)
|++|++++|
T Consensus 102 L~~L~l~~N 110 (290)
T 1p9a_G 102 LTVLDVSFN 110 (290)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555555
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=2.2e-15 Score=163.41 Aligned_cols=100 Identities=18% Similarity=0.286 Sum_probs=48.4
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhcc
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGK 506 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 506 (713)
|..+++|++|++++|. +..+|..+ .+|++|++++|. +..+| .++.+++|++|++++|. +..+|...
T Consensus 149 ~~~l~~L~~L~l~~N~------l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~-- 214 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS------LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDLP-- 214 (454)
T ss_dssp CTTCTTCCEEECCSSC------CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC--
T ss_pred cCCCCCCCEEECCCCc------CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCCc--
Confidence 4455555555555555 33333322 245555555554 44454 35555555555555554 44444322
Q ss_pred CCccceeeccCcccCCcccccCcCCCCCCcCCceecC
Q 043964 507 LINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVS 543 (713)
Q Consensus 507 L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 543 (713)
.+|++|++++| .+..+|. ++.+++|++|++..+.
T Consensus 215 -~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 215 -LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp -TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSC
T ss_pred -CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCc
Confidence 34555555555 2334442 5555555555555443
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=4.9e-16 Score=159.79 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=157.0
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
..+++++.+.++.+..++ .+..+++|++|.+++|.+.. +.+ +..+++|++|+|++|. +..++ .+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~------~~~--~~~l~~L~~L~L~~n~------l~~~~-~~ 103 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD------LAP--LKNLTKITELELSGNP------LKNVS-AI 103 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG--GTTCCSCCEEECCSCC------CSCCG-GG
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC------Chh--HccCCCCCEEEccCCc------CCCch-hh
Confidence 356778888777776644 67889999999999997432 122 7899999999999999 55554 68
Q ss_pred hccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCc
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRT 536 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 536 (713)
..+++|++|++++|. +..+|. +..+++|++|++++|. +..+|. +..+++|++|++++| .+..++. +..+++|+.
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTT 177 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCE
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCE
Confidence 999999999999999 888886 9999999999999998 778876 899999999999999 4556665 889999999
Q ss_pred CCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCc
Q 043964 537 FDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMI 600 (713)
Q Consensus 537 L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 600 (713)
|++..+.... +|. +..+++|+.|+|++| .+..++++..+++|+.|++++++
T Consensus 178 L~l~~n~l~~-----------~~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 178 LKADDNKISD-----------ISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EECCSSCCCC-----------CGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred EECCCCccCc-----------Chh-hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 9998876542 333 678999999999999 55667678999999999999754
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=3e-15 Score=150.96 Aligned_cols=124 Identities=25% Similarity=0.296 Sum_probs=53.4
Q ss_pred cCCccccCCcccccccCc-cccCCCCCcEEeccCccCccccchhh-ccCCccceeeccCcccCCccc-ccCcCCCCCCcC
Q 043964 461 HLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELPEGI-GKLINMKHLLNERTDSLGRMP-AGIARLTSLRTF 537 (713)
Q Consensus 461 ~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L 537 (713)
+|++|+|++|. +..+|. .+..+++|++|++++|. +..+|..+ ..+++|++|++++|. +..+| ..+..+++|++|
T Consensus 38 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 38 DTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence 44444444444 444332 34444444444444444 33444332 344444444444442 22222 223344444444
Q ss_pred CceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeecc
Q 043964 538 DEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITY 598 (713)
Q Consensus 538 ~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~ 598 (713)
++..+.... ..|..+..+++|+.|+|++| .+..+|. ++.+++|+.|+|++
T Consensus 115 ~l~~n~l~~----------~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 115 RLDRNQLKS----------LPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp ECCSSCCCC----------CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCe----------eCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecC
Confidence 443332211 11223345555666666555 2333333 45555555555554
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=4.8e-16 Score=157.41 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=65.6
Q ss_pred CCceEEEEEEecCCCCCCc-cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC-c
Q 043964 377 DKKVCHLMLIIGEGASFPV-STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-R 454 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~ 454 (713)
+..++++.+.++.+..++. .+.++++|++|++++|.+. .+++..|..+++|++|+|++|. +..++ .
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~ 94 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNP------IQSLALG 94 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCC------CCEECTT
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC------ccCHHHccCCcCCCEEECCCCc------cCccChh
Confidence 3445555554444433222 3444555555555554321 1112224445555555555555 32322 3
Q ss_pred chhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCccc--cchhhccCCccceeeccCcccCCcccccCcCC
Q 043964 455 NIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKE--LPEGIGKLINMKHLLNERTDSLGRMPAGIARL 531 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l 531 (713)
.+..+++|++|++++|. +..++. .++.+++|++|++++|. +.. +|..+..+++|++|++++|......+..+..+
T Consensus 95 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 44555555555555554 444432 35555555555555554 332 34455555555555555553222222334444
Q ss_pred CCCC
Q 043964 532 TSLR 535 (713)
Q Consensus 532 ~~L~ 535 (713)
++|+
T Consensus 173 ~~L~ 176 (276)
T 2z62_A 173 HQMP 176 (276)
T ss_dssp HTCT
T ss_pred hhcc
Confidence 4444
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=9.3e-16 Score=174.73 Aligned_cols=137 Identities=24% Similarity=0.230 Sum_probs=111.7
Q ss_pred CCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc-chhccCcCCccccCC
Q 043964 391 ASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKYLNLSC 469 (713)
Q Consensus 391 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~ 469 (713)
..+|..+. ++++.|++++|.+ ..+++..|.++++|++|+|++|. +..+|+ .+.+|++|++|+|++
T Consensus 44 ~~vP~~lp--~~~~~LdLs~N~i------~~l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 44 YKIPDNLP--FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp SSCCSSSC--TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTT
T ss_pred CccCCCCC--cCCCEEEeeCCCC------CCCCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEccC
Confidence 34454432 5899999999974 23344458999999999999999 777765 689999999999999
Q ss_pred cccccccCc-cccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccCC-cccccCcCCCCCCcCCceecC
Q 043964 470 LTSIRKLPE-PLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSLG-RMPAGIARLTSLRTFDEFHVS 543 (713)
Q Consensus 470 ~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~-~~p~~i~~l~~L~~L~~~~~~ 543 (713)
|. ++.+|. .+.+|++|++|++++|. +..+|.. +++|++|++|++++|.... ..|..++.+++|++|++..+.
T Consensus 110 N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 110 NP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred Cc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 98 999885 58999999999999998 7888764 8999999999999995433 457788889999988876653
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=4.7e-16 Score=153.82 Aligned_cols=173 Identities=13% Similarity=0.136 Sum_probs=120.1
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc-chhccCcCCccccCC-cccccccC-
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKYLNLSC-LTSIRKLP- 477 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~-~~~i~~lp- 477 (713)
++|+.|.+.++.+. .+++..|..+++|++|++++|.. +..+|. .+..+++|++|++++ |. +..+|
T Consensus 31 ~~l~~L~l~~n~l~------~i~~~~~~~l~~L~~L~l~~n~~-----l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLR------TIPSHAFSNLPNISRIYVSIDVT-----LQQLESHSFYNLSKVTHIEIRNTRN-LTYIDP 98 (239)
T ss_dssp TTCCEEEEESCCCS------EECTTTTTTCTTCCEEEEECCSS-----CCEECTTTEESCTTCCEEEEEEETT-CCEECT
T ss_pred CcccEEEEeCCcce------EECHHHccCCCCCcEEeCCCCCC-----cceeCHhHcCCCcCCcEEECCCCCC-eeEcCH
Confidence 47888888888642 22333477888999999988852 445554 678888999999988 66 77777
Q ss_pred ccccCCCCCcEEeccCccCccccchhhccCCccc---eeeccCcccCCcccc-cCcCCCCCC-cCCceecCCCCcccCCC
Q 043964 478 EPLCELYNLEKLDISHCWYLKELPEGIGKLINMK---HLLNERTDSLGRMPA-GIARLTSLR-TFDEFHVSRGKAVDGHK 552 (713)
Q Consensus 478 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~~p~-~i~~l~~L~-~L~~~~~~~~~ei~~~~ 552 (713)
..+..+++|++|++++|. +..+|. +..+++|+ +|++++|..+..+|. .+..+++|+ +|++..+...
T Consensus 99 ~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~------- 169 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT------- 169 (239)
T ss_dssp TSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-------
T ss_pred HHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-------
Confidence 467888999999999887 777887 77777777 888888844555554 467777777 7776655432
Q ss_pred CCCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCC-CCcceeeecc
Q 043964 553 GCNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGIL-PSLEKVIITY 598 (713)
Q Consensus 553 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l-~~L~~L~L~~ 598 (713)
.+|......++|+.|+|++|..+..+|. +..+ ++|+.|++++
T Consensus 170 ----~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 170 ----SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ----EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ----ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 2444433336777777777754555543 5566 6777777765
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=1.6e-15 Score=154.31 Aligned_cols=192 Identities=19% Similarity=0.156 Sum_probs=151.2
Q ss_pred CceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchh
Q 043964 378 KKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIE 457 (713)
Q Consensus 378 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 457 (713)
.+.+.+.+..+....+|..+. ++++.|.+++|.+. ...+..|..+++|++|+|++|. +..++.. +
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~-~ 74 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY------TFSLATLMPYTRLTQLNLDRAE------LTKLQVD-G 74 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS------EEEGGGGTTCTTCCEEECTTSC------CCEEECC-S
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCC------ccCHHHhhcCCCCCEEECCCCc------cCcccCC-C
Confidence 456667776666666565543 68999999999743 2233448899999999999999 5666654 7
Q ss_pred ccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccc-hhhccCCccceeeccCcccCCccc-ccCcCCCCCC
Q 043964 458 KLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELP-EGIGKLINMKHLLNERTDSLGRMP-AGIARLTSLR 535 (713)
Q Consensus 458 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~ 535 (713)
.+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|. +..+| ..+..+++|+
T Consensus 75 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred CCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCC
Confidence 89999999999998 99999999999999999999998 77777 458999999999999994 44555 4468899999
Q ss_pred cCCceecCCCCcccCCCCCCccCCc-cccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccC
Q 043964 536 TFDEFHVSRGKAVDGHKGCNNVFPN-WMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYM 599 (713)
Q Consensus 536 ~L~~~~~~~~~ei~~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 599 (713)
.|++..+.... +|. .+..+++|+.|+|++| .+..+|. +..+++|+.|.|++.
T Consensus 152 ~L~L~~N~l~~-----------l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 152 KLSLANNNLTE-----------LPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EEECTTSCCSC-----------CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred EEECCCCcCCc-----------cCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 99988776442 554 3467899999999998 4556766 777888999998864
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.7e-17 Score=173.44 Aligned_cols=160 Identities=12% Similarity=0.104 Sum_probs=76.0
Q ss_pred cCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCcc--ccchhhcc
Q 043964 429 KLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLK--ELPEGIGK 506 (713)
Q Consensus 429 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~ 506 (713)
.+++|++|+|++|.++ ...+|..+..+++|++|++++|......|..++.+++|++|++++|..+. .+|..+..
T Consensus 91 ~~~~L~~L~L~~~~l~----~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIE----VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CCBCCCEEECTTCEEC----HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred cCCCCCEEEccCCCcC----HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 4555555555555521 01144445555555555555555222444455555555555555553233 24444555
Q ss_pred CCccceeeccCcccCCc--ccccCcCCC-CCCcCCceecCC-CCcccCCCCCCccCCccccCCCCCcEEEeccCCCCC--
Q 043964 507 LINMKHLLNERTDSLGR--MPAGIARLT-SLRTFDEFHVSR-GKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCN-- 580 (713)
Q Consensus 507 L~~L~~L~l~~~~~l~~--~p~~i~~l~-~L~~L~~~~~~~-~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-- 580 (713)
+++|++|++++|..+.. ++..++.++ +|++|++..+.. . ....+|..+..+++|+.|+|++|..+.
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~--------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL--------QKSDLSTLVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS--------CHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC--------CHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence 55555555555522221 344445555 555555554421 0 001233444455555555555554222
Q ss_pred CCCCCCCCCCcceeeeccCc
Q 043964 581 QLPPLGILPSLEKVIITYMI 600 (713)
Q Consensus 581 ~l~~l~~l~~L~~L~L~~~~ 600 (713)
.++.++.+++|+.|++++|.
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHhCCCCCCEeeCCCCC
Confidence 12234555555555555543
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=4.2e-15 Score=150.43 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=88.6
Q ss_pred CceeEEEeCCCCcccchhhcccCc-chhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCccccc-hhhccC
Q 043964 431 TSLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELP-EGIGKL 507 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L 507 (713)
+.|++|++++|. +..++. .+.++++|++|++++|. +..++. .+..+++|++|++++|. +..+| ..+.++
T Consensus 28 ~~l~~L~ls~n~------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCC------CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTC
T ss_pred CCccEEECCCCc------ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCC
Confidence 468888888887 555554 67788888888888887 666653 67788888888888887 55554 557788
Q ss_pred CccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccC
Q 043964 508 INMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILC 576 (713)
Q Consensus 508 ~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~ 576 (713)
++|++|++++|......+..++.+++|++|++..+.... ..+|.++..+++|+.|+|++|
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS---------FKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC---------CCCCGGGGGCTTCCEEECCSS
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccce---------ecCchhhccCCCCCEEECCCC
Confidence 888888888874433333356677777777766654321 124666666777777777666
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=7.6e-15 Score=164.25 Aligned_cols=220 Identities=17% Similarity=0.112 Sum_probs=168.8
Q ss_pred CCCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc
Q 043964 376 LDKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN 455 (713)
Q Consensus 376 ~~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 455 (713)
..++++.|.+.++.+..++. .+++|++|.+++|.+... + ..+++|+.|++++|. +..+|..
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-------~---~~l~~L~~L~L~~N~------l~~lp~~ 139 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHL-------P---ALPSGLCKLWIFGNQ------LTSLPVL 139 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCC-------C---CCCTTCCEEECCSSC------CSCCCCC
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCC-------C---CCCCCcCEEECCCCC------CCcCCCC
Confidence 46789999999998877665 679999999999974321 1 157889999999999 6677764
Q ss_pred hhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCC
Q 043964 456 IEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLR 535 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~ 535 (713)
+++|++|+|++|. +..+|.. +.+|+.|++++|. +..+| ..+++|+.|++++| .+..+|.. +++|+
T Consensus 140 ---l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~ 204 (622)
T 3g06_A 140 ---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDN-QLASLPTL---PSELY 204 (622)
T ss_dssp ---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCCC---CTTCC
T ss_pred ---CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCC-CCCCCCCc---cchhh
Confidence 4889999999998 8888863 5789999999998 88888 56789999999998 45667754 46788
Q ss_pred cCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCccc
Q 043964 536 TFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEII 615 (713)
Q Consensus 536 ~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 615 (713)
.|++.++.... +|. .+++|+.|+|++| .+..+| ..+++|+.|+|+++. +..++.
T Consensus 205 ~L~L~~N~l~~-----------l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~-------- 258 (622)
T 3g06_A 205 KLWAYNNRLTS-----------LPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLPM-------- 258 (622)
T ss_dssp EEECCSSCCSS-----------CCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC--------
T ss_pred EEECcCCcccc-----------cCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCCc--------
Confidence 88887765432 554 3588999999998 556677 567899999999753 333322
Q ss_pred ccCcccceeeccccccccccccccccccccccccccccccccccccccCC
Q 043964 616 IAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLK 665 (713)
Q Consensus 616 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 665 (713)
.+++|+.|+++++ .+..++.. ...+++|+.|++++|+...
T Consensus 259 -~~~~L~~L~Ls~N-~L~~lp~~--------l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 259 -LPSGLLSLSVYRN-QLTRLPES--------LIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCTTCCEEECCSS-CCCSCCGG--------GGGSCTTCEEECCSCCCCH
T ss_pred -ccccCcEEeCCCC-CCCcCCHH--------HhhccccCEEEecCCCCCC
Confidence 5688999999886 45555433 4488999999999986443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.7e-15 Score=151.30 Aligned_cols=107 Identities=26% Similarity=0.397 Sum_probs=47.1
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCcc-hhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCccccch-h
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPRN-IEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELPE-G 503 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~ 503 (713)
|..+++|++|+|++|. +..+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|. .
T Consensus 57 ~~~l~~L~~L~l~~n~------l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 128 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNK------LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRV 128 (270)
T ss_dssp SSSCTTCCEEECCSSC------CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTT
T ss_pred hcCCCCCCEEECCCCc------cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHH
Confidence 4444555555555544 3334332 2444555555555544 444442 23444555555555544 333332 2
Q ss_pred hccCCccceeeccCcccCCcccc-cCcCCCCCCcCCceec
Q 043964 504 IGKLINMKHLLNERTDSLGRMPA-GIARLTSLRTFDEFHV 542 (713)
Q Consensus 504 i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~ 542 (713)
+..+++|++|++++|. +..+|. .++.+++|+.|++..+
T Consensus 129 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred hCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC
Confidence 3445555555555442 222332 2344444444444433
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=6.9e-15 Score=148.43 Aligned_cols=191 Identities=21% Similarity=0.300 Sum_probs=141.2
Q ss_pred ccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccccccc
Q 043964 397 TCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKL 476 (713)
Q Consensus 397 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~l 476 (713)
...+++|+.|.+.++.+.. ++. +..+++|++|++++|. +..+ +.+..+++|++|++++|. +..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-------~~~-l~~l~~L~~L~l~~n~------l~~~-~~l~~l~~L~~L~L~~n~-l~~~ 100 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-------VQG-IQYLPNVRYLALGGNK------LHDI-SALKELTNLTYLILTGNQ-LQSL 100 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECTTSC------CCCC-GGGTTCTTCCEEECTTSC-CCCC
T ss_pred cccccceeeeeeCCCCccc-------ccc-cccCCCCcEEECCCCC------CCCc-hhhcCCCCCCEEECCCCc-cCcc
Confidence 3457788888888876422 111 6778899999999988 4444 368888999999999988 7777
Q ss_pred Ccc-ccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccCCccc-ccCcCCCCCCcCCceecCCCCcccCCCC
Q 043964 477 PEP-LCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSLGRMP-AGIARLTSLRTFDEFHVSRGKAVDGHKG 553 (713)
Q Consensus 477 p~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~ei~~~~~ 553 (713)
|.. ++.+++|++|++++|. +..+|.. +..+++|++|++++|. +..+| ..++.+++|++|++..+....
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------- 171 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQS------- 171 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------
T ss_pred ChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCc-------
Confidence 654 6889999999999988 6666655 6889999999999984 44554 446888999999988876432
Q ss_pred CCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccc
Q 043964 554 CNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWM 629 (713)
Q Consensus 554 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~ 629 (713)
..|..+..+++|+.|+|++|. +..+++ ++.+++|+.|++++++ +.+ .+|+|+.|.+...
T Consensus 172 ---~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~--------~~~-----~~~~l~~l~~~~n 232 (272)
T 3rfs_A 172 ---LPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP--------WDC-----TCPGIRYLSEWIN 232 (272)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC--------BCC-----CTTTTHHHHHHHH
T ss_pred ---cCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC--------ccc-----cCcHHHHHHHHHH
Confidence 133445788999999999985 444544 7889999999998753 111 5678888877653
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=5.4e-17 Score=169.53 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=124.1
Q ss_pred CceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccc--cCccccCCCCCcEEeccCccCccccchhhccCC
Q 043964 431 TSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK--LPEPLCELYNLEKLDISHCWYLKELPEGIGKLI 508 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 508 (713)
+.+++|+++++. +...+..+..+++|++|++++|. +.. +|..+..+++|++|++++|......|..+.+++
T Consensus 70 ~~l~~L~l~~n~------l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSF------MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCE------ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred ccceEEEcCCcc------ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 667777777776 44555556667777777777776 442 666677777777777777763345666677777
Q ss_pred ccceeeccCcccCC--cccccCcCCCCCCcCCceec-CCCCcccCCCCCCccCCccccCCC-CCcEEEeccCC-CC--CC
Q 043964 509 NMKHLLNERTDSLG--RMPAGIARLTSLRTFDEFHV-SRGKAVDGHKGCNNVFPNWMMSLT-NPRSLELILCE-NC--NQ 581 (713)
Q Consensus 509 ~L~~L~l~~~~~l~--~~p~~i~~l~~L~~L~~~~~-~~~~ei~~~~~~~~~~p~~~~~l~-~L~~L~L~~~~-~~--~~ 581 (713)
+|++|++++|..+. .+|..+..+++|++|++..+ ... ...+|..+..++ +|+.|+|++|. .+ ..
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~---------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT---------EKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC---------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC---------hHHHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 77777777774444 25555667777777777666 322 112445555677 77777777774 22 22
Q ss_pred CCC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccc
Q 043964 582 LPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDS 660 (713)
Q Consensus 582 l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 660 (713)
+|. +..+++|+.|++++|..+..... .....+++|+.|++++|..+..... .....+|+|+.|++++
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~l~~l~~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCF-----QEFFQLNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFG 281 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGG-----GGGGGCTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTT
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHH-----HHHhCCCCCCEeeCCCCCCCCHHHH-------HHHhcCCCCCEEeccC
Confidence 333 45677777777777653321111 1123567777777777653322111 0123577777777777
Q ss_pred c
Q 043964 661 C 661 (713)
Q Consensus 661 c 661 (713)
|
T Consensus 282 ~ 282 (336)
T 2ast_B 282 I 282 (336)
T ss_dssp S
T ss_pred c
Confidence 7
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=6.3e-15 Score=151.92 Aligned_cols=197 Identities=19% Similarity=0.124 Sum_probs=99.8
Q ss_pred CCCceeEEEecCCcCCCcchhhhHHHHH-HccCCceeEEEeCCCCcccchhhcccCcchhcc-----CcCCccccCCccc
Q 043964 399 RVKRMRSLFIGGNMLDNSSLNGKMLKEL-FEKLTSLRVLNIGKWSISRWYFILEIPRNIEKL-----IHLKYLNLSCLTS 472 (713)
Q Consensus 399 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L-----~~Lr~L~L~~~~~ 472 (713)
++++|++|.+++|.+.. ..+..+ +..+++|++|+|++|. +...|..++.+ ++|++|+|++|.
T Consensus 93 ~l~~L~~L~L~~n~l~~-----~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~l~~~~~~~L~~L~L~~N~- 160 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG-----TAPPPLLEATGPDLNILNLRNVS------WATRDAWLAELQQWLKPGLKVLSIAQAH- 160 (312)
T ss_dssp TTSCCCEEEEEEEBCBS-----CCCCCSSSCCSCCCSEEEEESCB------CSSSSSHHHHHHTTCCTTCCEEEEESCS-
T ss_pred CcCCccEEEccCCcccc-----hhHHHHHHhcCCCccEEEccCCC------CcchhHHHHHHHHhhcCCCcEEEeeCCC-
Confidence 45566666666554321 111111 1556666666666666 33445555555 566666666666
Q ss_pred ccccC-ccccCCCCCcEEeccCccCccc--cchhh--ccCCccceeeccCcccCCcc---c-ccCcCCCCCCcCCceecC
Q 043964 473 IRKLP-EPLCELYNLEKLDISHCWYLKE--LPEGI--GKLINMKHLLNERTDSLGRM---P-AGIARLTSLRTFDEFHVS 543 (713)
Q Consensus 473 i~~lp-~~i~~L~~L~~L~l~~~~~l~~--lp~~i--~~L~~L~~L~l~~~~~l~~~---p-~~i~~l~~L~~L~~~~~~ 543 (713)
+..+| ..++.+++|++|++++|..... +|..+ ..+++|++|++++|. +..+ + ..+..+++|+.|++..+.
T Consensus 161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 44444 5566666666666666653222 23333 556666666666663 2221 2 122345666666665554
Q ss_pred CCCcccCCCCCCccCC-ccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccCccceEeCccccCCcccccCccc
Q 043964 544 RGKAVDGHKGCNNVFP-NWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKL 621 (713)
Q Consensus 544 ~~~ei~~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L 621 (713)
... ..| ..+..+++|+.|+|++|. +..+|. +. ++|+.|+|+++. ++.++. ...+++|
T Consensus 240 l~~----------~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-------~~~l~~L 298 (312)
T 1wwl_A 240 LRD----------AAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-LDRNPS-------PDELPQV 298 (312)
T ss_dssp CCS----------SCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC-CCSCCC-------TTTSCEE
T ss_pred CCc----------ccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC-CCCChh-------HhhCCCC
Confidence 331 011 223345666666666663 335554 32 566666666532 222211 2256666
Q ss_pred ceeecccc
Q 043964 622 KSLTISWM 629 (713)
Q Consensus 622 ~~L~l~~~ 629 (713)
++|++++.
T Consensus 299 ~~L~L~~N 306 (312)
T 1wwl_A 299 GNLSLKGN 306 (312)
T ss_dssp EEEECTTC
T ss_pred CEEeccCC
Confidence 66666653
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=148.96 Aligned_cols=196 Identities=13% Similarity=0.059 Sum_probs=114.2
Q ss_pred ceEEEEEEecCCCCC-Cccc--cCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC-c
Q 043964 379 KVCHLMLIIGEGASF-PVST--CRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-R 454 (713)
Q Consensus 379 ~~r~lsl~~~~~~~~-~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~ 454 (713)
+++.+.+.++.+... +..+ ..+++|++|++++|.+.... .......+..+++|++|+|++|. +..++ .
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~~~~~~L~~L~Ls~n~------l~~~~~~ 163 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR--SWLAELQQWLKPGLKVLSIAQAH------SPAFSCE 163 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT--SSHHHHHTTBCSCCCEEEEECCS------SCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh--hhhHHHHhhhccCCCEEEeeCCC------cchhhHH
Confidence 366666666654422 3333 56777777777777543210 11111224467777777777777 43433 5
Q ss_pred chhccCcCCccccCCcccccc---cC--ccccCCCCCcEEeccCccCccccchh----hccCCccceeeccCcccCCccc
Q 043964 455 NIEKLIHLKYLNLSCLTSIRK---LP--EPLCELYNLEKLDISHCWYLKELPEG----IGKLINMKHLLNERTDSLGRMP 525 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~---lp--~~i~~L~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~p 525 (713)
.++.+++|++|+|++|. +.. ++ ..++.+++|++|++++|. +..+|.. +..+++|++|++++|......|
T Consensus 164 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp SCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 66677777777777776 322 32 223567777777777776 5555542 4566777777777775444446
Q ss_pred ccCcCC---CCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeecc
Q 043964 526 AGIARL---TSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITY 598 (713)
Q Consensus 526 ~~i~~l---~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 598 (713)
..++.+ ++|++|++..+.... +|.++. ++|+.|+|++| .+..+|.+..+++|+.|+|++
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~~-----------lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLEQ-----------VPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCCS-----------CCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSS
T ss_pred hhHHhccCcCcCCEEECCCCCCCc-----------hhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcC
Confidence 655555 466666666554332 455442 56677777666 344445556666666666654
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=1.3e-14 Score=147.74 Aligned_cols=168 Identities=17% Similarity=0.241 Sum_probs=125.1
Q ss_pred cCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccC
Q 043964 398 CRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLP 477 (713)
Q Consensus 398 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp 477 (713)
..+++|+.|.+.++.+... +. +..+++|++|+|++|. +..++. +..+++|++|++++|. +..+|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-------~~-~~~l~~L~~L~L~~n~------l~~~~~-l~~l~~L~~L~l~~n~-l~~~~ 106 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-------QG-IQYLPNVTKLFLNGNK------LTDIKP-LANLKNLGWLFLDENK-VKDLS 106 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-------TT-GGGCTTCCEEECCSSC------CCCCGG-GTTCTTCCEEECCSSC-CCCGG
T ss_pred hhcCcccEEEccCCCcccC-------hh-HhcCCCCCEEEccCCc------cCCCcc-cccCCCCCEEECCCCc-CCCCh
Confidence 4567888888887764221 12 6778888888888888 556655 8888888888888887 77776
Q ss_pred ccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCcc
Q 043964 478 EPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNV 557 (713)
Q Consensus 478 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~ 557 (713)
. +..+++|++|++++|. +..+| .+..+++|++|++++|. +..+ ..++.+++|+.|++..+....
T Consensus 107 ~-l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~----------- 170 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD----------- 170 (291)
T ss_dssp G-GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCC-----------
T ss_pred h-hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcccc-----------
Confidence 5 8888888888888887 66664 57888888888888884 3444 467788888888887765442
Q ss_pred CCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccC
Q 043964 558 FPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYM 599 (713)
Q Consensus 558 ~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 599 (713)
++. +..+++|+.|+|++| .+..++.+..+++|+.|+++++
T Consensus 171 ~~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 171 IVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEE
T ss_pred chh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCC
Confidence 333 667888888888888 5566777888888888888764
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=145.87 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=121.8
Q ss_pred CCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch--hccCcCCccccCCcccccc-
Q 043964 399 RVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI--EKLIHLKYLNLSCLTSIRK- 475 (713)
Q Consensus 399 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i--~~L~~Lr~L~L~~~~~i~~- 475 (713)
+...++.+.+.+..+....+ .. ... +..+++|++|++++|.+ ....|..+ ..+++|++|+|++|. +..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~-~~-~~~-~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~ 132 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLL-VG-ALR-VLAYSRLKELTLEDLKI-----TGTMPPLPLEATGLALSSLRLRNVS-WATG 132 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHH-HH-HHH-HHHHSCCCEEEEESCCC-----BSCCCCCSSSCCCBCCSSCEEESCC-CSST
T ss_pred hhcceeEEEEeCCcCCHHHH-HH-HHH-hcccCceeEEEeeCCEe-----ccchhhhhhhccCCCCCEEEeeccc-ccch
Confidence 34457777777765322111 11 112 23456799999999984 23566666 889999999999998 553
Q ss_pred cC----ccccCCCCCcEEeccCccCccccc-hhhccCCccceeeccCcccCCc--cc--ccCcCCCCCCcCCceecCCCC
Q 043964 476 LP----EPLCELYNLEKLDISHCWYLKELP-EGIGKLINMKHLLNERTDSLGR--MP--AGIARLTSLRTFDEFHVSRGK 546 (713)
Q Consensus 476 lp----~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~p--~~i~~l~~L~~L~~~~~~~~~ 546 (713)
.| ..+..+++|++|++++|. +..+| ..++.+++|++|++++|..... ++ ..++.+++|++|++..+....
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred hhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 33 335679999999999998 55554 6788999999999999954331 32 334788999999988876431
Q ss_pred cccCCCCCCccCCcc-ccCCCCCcEEEeccCCCCCCCCC-CCCC---CCcceeeeccC
Q 043964 547 AVDGHKGCNNVFPNW-MMSLTNPRSLELILCENCNQLPP-LGIL---PSLEKVIITYM 599 (713)
Q Consensus 547 ei~~~~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~l~~-l~~l---~~L~~L~L~~~ 599 (713)
....+.+ +..+++|+.|+|++|......|. ++.+ ++|+.|+|+++
T Consensus 212 --------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 212 --------PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp --------HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred --------hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence 0011222 35778999999998854443343 4443 57777777653
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=2.9e-14 Score=149.48 Aligned_cols=92 Identities=18% Similarity=0.140 Sum_probs=39.3
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCc-chhccCcCCc-cccCCcccccccC-ccccCCCCCcEEeccCccCccccchh
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKY-LNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPEG 503 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~-L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~ 503 (713)
|.++++|++|+|++|.+ ...+|. .+.+|++|+. +.+++|. +..+| ..+..+++|++|++++|. +..+|..
T Consensus 50 f~~l~~L~~L~Ls~N~i-----~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~ 122 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDV-----LEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTG-IKHLPDV 122 (350)
T ss_dssp STTCTTCCEEEEECCTT-----CCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCC
T ss_pred HcCCCCCCEEECcCCCC-----CCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhccccccccccccc-cccCCch
Confidence 45555555555555542 122332 3344444443 2223333 44442 334555555555555554 3433331
Q ss_pred -hccCCccceeeccCcccCCccc
Q 043964 504 -IGKLINMKHLLNERTDSLGRMP 525 (713)
Q Consensus 504 -i~~L~~L~~L~l~~~~~l~~~p 525 (713)
.....++..|++.++..+..+|
T Consensus 123 ~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 123 HKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp TTCCBSSCEEEEEESCTTCCEEC
T ss_pred hhcccchhhhhhhcccccccccc
Confidence 2233344444444443333333
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=4.3e-14 Score=143.94 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=133.8
Q ss_pred ccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccC
Q 043964 428 EKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKL 507 (713)
Q Consensus 428 ~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 507 (713)
..+++|+.|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|++|++++|. +..+|. +..+
T Consensus 43 ~~l~~L~~L~l~~~~------i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l 111 (291)
T 1h6t_A 43 NELNSIDQIIANNSD------IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (291)
T ss_dssp HHHHTCCEEECTTSC------CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred hhcCcccEEEccCCC------cccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccC
Confidence 456789999999998 66665 48899999999999998 888887 9999999999999998 777765 8999
Q ss_pred CccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCC
Q 043964 508 INMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGI 587 (713)
Q Consensus 508 ~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 587 (713)
++|++|++++|. +..+ ..++.+++|+.|++..+.... + ..+..+++|+.|+|++| .+..++.+..
T Consensus 112 ~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~-----------~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~ 176 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-----------I-TVLSRLTKLDTLSLEDN-QISDIVPLAG 176 (291)
T ss_dssp TTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCC-----------C-GGGGGCTTCSEEECCSS-CCCCCGGGTT
T ss_pred CCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCc-----------c-hhhccCCCCCEEEccCC-ccccchhhcC
Confidence 999999999994 4444 467889999999988876542 2 56778899999999988 4555666888
Q ss_pred CCCcceeeeccCccceEeCccccCCcccccCcccceeeccccc
Q 043964 588 LPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWML 630 (713)
Q Consensus 588 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 630 (713)
+++|+.|+++++. +..++ ....+++|+.|++++++
T Consensus 177 l~~L~~L~L~~N~-i~~l~-------~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 177 LTKLQNLYLSKNH-ISDLR-------ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CTTCCEEECCSSC-CCBCG-------GGTTCTTCSEEEEEEEE
T ss_pred CCccCEEECCCCc-CCCCh-------hhccCCCCCEEECcCCc
Confidence 9999999998753 33221 23467888888887653
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=1.3e-14 Score=138.70 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=66.3
Q ss_pred CceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCcc
Q 043964 431 TSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINM 510 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 510 (713)
++|+.|+++++. +..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|......|..+..+++|
T Consensus 44 ~~L~~L~l~~n~------i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANIN------VTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HTCCEEEEESSC------CSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred CCccEEeccCCC------ccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 344445554444 33333 34444555555555543 44333 34445555555555544222234444445555
Q ss_pred ceeeccCcccCCcccccCcCCCCCCcCCceecC-CCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCC
Q 043964 511 KHLLNERTDSLGRMPAGIARLTSLRTFDEFHVS-RGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILP 589 (713)
Q Consensus 511 ~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~-~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 589 (713)
++|++++|......|..++.+++|++|++..+. ... +| .+..+++|+.|++++| .+..++.+..++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----------~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~ 181 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-----------IM-PLKTLPELKSLNIQFD-GVHDYRGIEDFP 181 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-----------CG-GGGGCSSCCEEECTTB-CCCCCTTGGGCS
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-----------cH-hhcCCCCCCEEECCCC-CCcChHHhccCC
Confidence 555555443332333334444444444443332 111 22 3344555556666555 233444555555
Q ss_pred Ccceeeecc
Q 043964 590 SLEKVIITY 598 (713)
Q Consensus 590 ~L~~L~L~~ 598 (713)
+|+.|++++
T Consensus 182 ~L~~L~l~~ 190 (197)
T 4ezg_A 182 KLNQLYAFS 190 (197)
T ss_dssp SCCEEEECB
T ss_pred CCCEEEeeC
Confidence 566655553
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=4.1e-14 Score=158.15 Aligned_cols=169 Identities=18% Similarity=0.242 Sum_probs=131.2
Q ss_pred cCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccC
Q 043964 398 CRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLP 477 (713)
Q Consensus 398 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp 477 (713)
..+++|+.|.+.++.+.. ++. +..+++|+.|+|++|. +..+|+ +..|++|++|+|++|. +..+|
T Consensus 40 ~~L~~L~~L~l~~n~i~~-------l~~-l~~l~~L~~L~Ls~N~------l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~ 103 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-------VQG-IQYLPNVTKLFLNGNK------LTDIKP-LTNLKNLGWLFLDENK-IKDLS 103 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-------CTT-GGGCTTCCEEECTTSC------CCCCGG-GGGCTTCCEEECCSSC-CCCCT
T ss_pred hcCCCCCEEECcCCCCCC-------ChH-HccCCCCCEEEeeCCC------CCCChh-hccCCCCCEEECcCCC-CCCCh
Confidence 457788888888876432 112 6788899999999988 556655 8888999999999988 88777
Q ss_pred ccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCcc
Q 043964 478 EPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNV 557 (713)
Q Consensus 478 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~ 557 (713)
.+..+++|++|+|++|. +..+| .+..|++|+.|+|++|. +..+ ..++.+++|+.|++..+....
T Consensus 104 -~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~----------- 167 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD----------- 167 (605)
T ss_dssp -TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCC-----------
T ss_pred -hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCC-----------
Confidence 58889999999999987 67665 48889999999999884 4444 567888889988888776442
Q ss_pred CCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCc
Q 043964 558 FPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMI 600 (713)
Q Consensus 558 ~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 600 (713)
++. +..+++|+.|+|++| .+..+|.+..|++|+.|+|+++.
T Consensus 168 ~~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 168 IVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred chh-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence 333 678889999999988 55667778889999999998754
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=4e-16 Score=166.20 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=155.7
Q ss_pred CCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc-------hhccCcCCcc
Q 043964 393 FPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN-------IEKLIHLKYL 465 (713)
Q Consensus 393 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-------i~~L~~Lr~L 465 (713)
+...+..+++|++|.+++|.+... ....+...+..+++|++|+|++|..... ...+|.. +..+++|++|
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~~~~~~l--~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTE--AARWLSENIASKKDLEIAEFSDIFTGRV--KDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHH--HHHHHHHTTTTCTTCCEEECCSCCTTSC--GGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHhcCCCccEEECCCCCCCHH--HHHHHHHHHHhCCCccEEeCcccccCcc--ccchhHHHHHHHHHHhhCCcccEE
Confidence 355666778899999988864211 1111333466788999999988753210 1123333 4678899999
Q ss_pred ccCCcccccc-----cCccccCCCCCcEEeccCccCcc-----ccchhhccC---------CccceeeccCcccC-Cccc
Q 043964 466 NLSCLTSIRK-----LPEPLCELYNLEKLDISHCWYLK-----ELPEGIGKL---------INMKHLLNERTDSL-GRMP 525 (713)
Q Consensus 466 ~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~-----~lp~~i~~L---------~~L~~L~l~~~~~l-~~~p 525 (713)
+|++|. +.. +|..+..+++|++|+|++|. +. .++..+..+ ++|++|++++|... ..+|
T Consensus 100 ~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 100 RLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp ECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred ECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 999888 554 77778888999999999887 43 233444455 88999999988543 3344
Q ss_pred ---ccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCC----CCCCC-CCCCCCcceeeec
Q 043964 526 ---AGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENC----NQLPP-LGILPSLEKVIIT 597 (713)
Q Consensus 526 ---~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~----~~l~~-l~~l~~L~~L~L~ 597 (713)
..+..+++|++|++..+..... +.....|.++..+++|+.|+|++|... ..+|. +..+++|+.|+|+
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~-----g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPE-----GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHH-----HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHh-----HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 4566788888888877654310 000013346677888999999888531 33444 6778888888888
Q ss_pred cCccceEeCccccCCccc--ccCcccceeeccccccccc-----ccccccccccccccccccccccccccccc
Q 043964 598 YMISVKRVGNEFLGIEII--IAFPKLKSLTISWMLELKE-----WNYGITRTGNAFINIMPRLSSLTIDSCPK 663 (713)
Q Consensus 598 ~~~~l~~~~~~~~~~~~~--~~f~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 663 (713)
+|. +...+..... ... ..+++|+.|+|+++. +.. ++... ...+|+|+.|++++|+-
T Consensus 253 ~n~-i~~~~~~~l~-~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-------~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 253 DCL-LSARGAAAVV-DAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-------DEKMPDLLFLELNGNRF 315 (386)
T ss_dssp TCC-CCHHHHHHHH-HHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-------HHHCTTCCEEECTTSBS
T ss_pred CCC-CchhhHHHHH-HHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-------HhcCCCceEEEccCCcC
Confidence 764 2111000000 001 136888888888763 222 22111 12578888888888843
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=2.8e-16 Score=171.72 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=27.2
Q ss_pred ccccccccccccccCC-----CCCCCCCCCCCccEEEEEcCCc
Q 043964 650 MPRLSSLTIDSCPKLK-----ALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 650 ~p~L~~L~l~~c~~L~-----~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
.++|++|++++| .+. .+|..+..+++|++|+++ +|+
T Consensus 369 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~-~N~ 409 (461)
T 1z7x_W 369 GSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLS-NNC 409 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECC-SSS
T ss_pred CCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECC-CCC
Confidence 568888888888 444 566666678889999998 664
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=5.6e-16 Score=165.08 Aligned_cols=240 Identities=13% Similarity=0.072 Sum_probs=167.4
Q ss_pred HHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccccc----ccCccc-------cCCCCCcEEecc
Q 043964 424 KELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIR----KLPEPL-------CELYNLEKLDIS 492 (713)
Q Consensus 424 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~----~lp~~i-------~~L~~L~~L~l~ 492 (713)
...+..+++|++|+|++|.++.. ....++..+..+++|++|+|++|. +. .+|..+ ..+++|++|+|+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTE-AARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHH-HHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHH-HHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34477899999999999985320 112245567789999999999975 43 344444 789999999999
Q ss_pred CccCccc-----cchhhccCCccceeeccCcccCCc----ccccCcCC---------CCCCcCCceecCCCCcccCCCCC
Q 043964 493 HCWYLKE-----LPEGIGKLINMKHLLNERTDSLGR----MPAGIARL---------TSLRTFDEFHVSRGKAVDGHKGC 554 (713)
Q Consensus 493 ~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~----~p~~i~~l---------~~L~~L~~~~~~~~~ei~~~~~~ 554 (713)
+|. +.. +|..+.++++|++|++++|..... ++..+..+ ++|++|++..+....
T Consensus 103 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------- 173 (386)
T 2ca6_A 103 DNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-------- 173 (386)
T ss_dssp SCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--------
T ss_pred CCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc--------
Confidence 998 544 888899999999999999954322 23334444 899999998876541
Q ss_pred CccCC---ccccCCCCCcEEEeccCCCCC-----CCC-CCCCCCCcceeeeccCccc----eEeCccccCCcccccCccc
Q 043964 555 NNVFP---NWMMSLTNPRSLELILCENCN-----QLP-PLGILPSLEKVIITYMISV----KRVGNEFLGIEIIIAFPKL 621 (713)
Q Consensus 555 ~~~~p---~~~~~l~~L~~L~L~~~~~~~-----~l~-~l~~l~~L~~L~L~~~~~l----~~~~~~~~~~~~~~~f~~L 621 (713)
..+| ..+..+++|+.|+|++|.... ..| .+..+++|+.|+|+++.-- ..++. ....+++|
T Consensus 174 -~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~------~l~~~~~L 246 (386)
T 2ca6_A 174 -GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI------ALKSWPNL 246 (386)
T ss_dssp -GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH------HGGGCTTC
T ss_pred -HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH------HHccCCCc
Confidence 2234 345578999999999994321 244 5788999999999986521 11111 12367899
Q ss_pred ceeecccccccccccccccccccccc--ccccccccccccccccCCC-----CCCCC-CCCCCccEEEEEcCCc
Q 043964 622 KSLTISWMLELKEWNYGITRTGNAFI--NIMPRLSSLTIDSCPKLKA-----LPDHF-HQTTTLKELIIRSNCG 687 (713)
Q Consensus 622 ~~L~l~~~~~l~~~~~~~~~~~~~~~--~~~p~L~~L~l~~c~~L~~-----lp~~l-~~l~~L~~L~i~~~C~ 687 (713)
+.|+|+++. +....... .+... ..+++|++|++++| .+.. +|..+ .++++|+.|+++ +|+
T Consensus 247 ~~L~L~~n~-i~~~~~~~---l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~-~N~ 314 (386)
T 2ca6_A 247 RELGLNDCL-LSARGAAA---VVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELN-GNR 314 (386)
T ss_dssp CEEECTTCC-CCHHHHHH---HHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECT-TSB
T ss_pred CEEECCCCC-CchhhHHH---HHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEcc-CCc
Confidence 999999874 32211000 00011 24899999999999 4554 77766 568999999998 665
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=1.1e-13 Score=154.54 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=130.6
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhcc
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGK 506 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 506 (713)
+..+++|+.|+++++. +..+| .+..|++|++|+|++|. +..+|. ++.+++|+.|+|++|. +..+| .+..
T Consensus 39 ~~~L~~L~~L~l~~n~------i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD------IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKD 107 (605)
T ss_dssp HHHHTTCCCCBCTTCC------CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTT
T ss_pred hhcCCCCCEEECcCCC------CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhcc
Confidence 3467788889999888 55665 58889999999999988 888876 8899999999999987 77776 5888
Q ss_pred CCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCC
Q 043964 507 LINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLG 586 (713)
Q Consensus 507 L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~ 586 (713)
|++|++|++++|. +..+ +.++.+++|+.|++..+.... + ..+..+++|+.|+|++|. +..++++.
T Consensus 108 l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~-----------l-~~l~~l~~L~~L~Ls~N~-l~~~~~l~ 172 (605)
T 1m9s_A 108 LKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-----------I-TVLSRLTKLDTLSLEDNQ-ISDIVPLA 172 (605)
T ss_dssp CTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCCC-----------C-GGGGSCTTCSEEECCSSC-CCCCGGGT
T ss_pred CCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCccCC-----------c-hhhcccCCCCEEECcCCc-CCCchhhc
Confidence 9999999999884 4444 457888899999888776542 2 456788899999999884 45555588
Q ss_pred CCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccc
Q 043964 587 ILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWML 630 (713)
Q Consensus 587 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 630 (713)
.+++|+.|+|+++. +..+ .....+++|+.|+|++++
T Consensus 173 ~l~~L~~L~Ls~N~-i~~l-------~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 GLTKLQNLYLSKNH-ISDL-------RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCCEEECCSSC-CCBC-------GGGTTCTTCSEEECCSEE
T ss_pred cCCCCCEEECcCCC-CCCC-------hHHccCCCCCEEEccCCc
Confidence 88999999998763 3222 123467888888888754
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=6.5e-14 Score=146.80 Aligned_cols=204 Identities=17% Similarity=0.188 Sum_probs=93.8
Q ss_pred CCceEEEEEEecCCCCCCc-cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeE-EEeCCCCcccchhhccc-C
Q 043964 377 DKKVCHLMLIIGEGASFPV-STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRV-LNIGKWSISRWYFILEI-P 453 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~-L~L~~~~~~~~~~~~~l-p 453 (713)
+.+++.|.+.++.+..++. .+.++++|++|++++|.+. ..++...|.+++.|.. +.+.++. +..+ |
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-----~~i~~~~f~~L~~l~~~l~~~~N~------l~~l~~ 97 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-----EVIEADVFSNLPKLHEIRIEKANN------LLYINP 97 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-----CEECTTSBCSCTTCCEEEEEEETT------CCEECT
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-----CccChhHhhcchhhhhhhcccCCc------ccccCc
Confidence 4455555555555554432 3455556666666555321 1111222444544332 3444444 3344 2
Q ss_pred cchhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCccccchh-hccC-CccceeeccCcccCCcccccCcC
Q 043964 454 RNIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELPEG-IGKL-INMKHLLNERTDSLGRMPAGIAR 530 (713)
Q Consensus 454 ~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L-~~L~~L~l~~~~~l~~~p~~i~~ 530 (713)
..+..+++|++|++++|. +..+|. .+....++.+|++.++..+..+|.. +..+ ..|+.|++++| .+..+|..+..
T Consensus 98 ~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~ 175 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFN 175 (350)
T ss_dssp TSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSST
T ss_pred hhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhcc
Confidence 345555566666665555 444442 2333444555555554445555442 2333 24555555555 33445544444
Q ss_pred CCCCCcCCceecCCCCcccCCCCCCccCCc-cccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEe
Q 043964 531 LTSLRTFDEFHVSRGKAVDGHKGCNNVFPN-WMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRV 605 (713)
Q Consensus 531 l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 605 (713)
.++|++|.+..+... ..+|. .+..+++|+.|+|++| .+..+|. +.+.+|+.|.+.++..++.+
T Consensus 176 ~~~L~~l~l~~~n~l----------~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 176 GTQLDELNLSDNNNL----------EELPNDVFHGASGPVILDISRT-RIHSLPS-YGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp TEEEEEEECTTCTTC----------CCCCTTTTTTEECCSEEECTTS-CCCCCCS-SSCTTCCEEECTTCTTCCCC
T ss_pred ccchhHHhhccCCcc----------cCCCHHHhccCcccchhhcCCC-CcCccCh-hhhccchHhhhccCCCcCcC
Confidence 555555554432211 11332 2345555555555555 3444443 22344444444444444333
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=1.5e-13 Score=151.77 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=122.3
Q ss_pred CceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCcc
Q 043964 431 TSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINM 510 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 510 (713)
.+|++|+|+++. +..+|..+. ++|++|+|++|. +..+| ..+++|++|++++|. +..+|. +.+ +|
T Consensus 59 ~~L~~L~Ls~n~------L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 59 NQFSELQLNRLN------LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TTCSEEECCSSC------CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CCccEEEeCCCC------CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 378899999888 666777663 789999999988 88888 457889999999987 777887 655 89
Q ss_pred ceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCC
Q 043964 511 KHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPS 590 (713)
Q Consensus 511 ~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 590 (713)
++|++++| .+..+|. .+++|+.|++.++.... +|. .+++|+.|+|++|. +..+|.+. ++
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~-----------lp~---~l~~L~~L~Ls~N~-L~~lp~l~--~~ 181 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYINADNNQLTM-----------LPE---LPTSLEVLSVRNNQ-LTFLPELP--ES 181 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSC-----------CCC---CCTTCCEEECCSSC-CSCCCCCC--TT
T ss_pred CEEECCCC-cCCCCCC---cCccccEEeCCCCccCc-----------CCC---cCCCcCEEECCCCC-CCCcchhh--CC
Confidence 99999988 4455776 57888888887765432 555 46788888888884 45576644 78
Q ss_pred cceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccccccccccccccccccccccccccCCCCC
Q 043964 591 LEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALP 668 (713)
Q Consensus 591 L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp 668 (713)
|+.|+|+++. +..++. +.. .-....+.|+.|+++++ .++.++.. ...+++|+.|++++|+....+|
T Consensus 182 L~~L~Ls~N~-L~~lp~-~~~-~L~~~~~~L~~L~Ls~N-~l~~lp~~--------l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 182 LEALDVSTNL-LESLPA-VPV-RNHHSEETEIFFRCREN-RITHIPEN--------ILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCEEECCSSC-CSSCCC-CC---------CCEEEECCSS-CCCCCCGG--------GGGSCTTEEEECCSSSCCHHHH
T ss_pred CCEEECcCCC-CCchhh-HHH-hhhcccccceEEecCCC-cceecCHH--------HhcCCCCCEEEeeCCcCCCcCH
Confidence 8888887653 333332 110 00001122266666553 33333322 2246666666666664433333
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=9.5e-14 Score=138.25 Aligned_cols=147 Identities=20% Similarity=0.270 Sum_probs=75.1
Q ss_pred ceeEEEeCCCCcccchhhcccC-cchhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccch-hhccCC
Q 043964 432 SLRVLNIGKWSISRWYFILEIP-RNIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPE-GIGKLI 508 (713)
Q Consensus 432 ~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~ 508 (713)
.|+.|+|+++. +..++ ..+..+++|++|+|++|. +..++ ..+..+++|++|++++|. +..+|. .+..++
T Consensus 36 ~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 107 (251)
T 3m19_A 36 DTEKLDLQSTG------LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLT 107 (251)
T ss_dssp TCCEEECTTSC------CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred CCCEEEccCCC------cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccC
Confidence 45555555555 33332 245555555555555555 44333 234555555555555554 444443 245555
Q ss_pred ccceeeccCcccCCcccc-cCcCCCCCCcCCceecCCCCcccCCCCCCccCCc-cccCCCCCcEEEeccCCCCCCCCC--
Q 043964 509 NMKHLLNERTDSLGRMPA-GIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPN-WMMSLTNPRSLELILCENCNQLPP-- 584 (713)
Q Consensus 509 ~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~-- 584 (713)
+|++|++++| .+..+|. .++.+++|++|++..+.... +|. .+..+++|+.|+|++|. +..++.
T Consensus 108 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 174 (251)
T 3m19_A 108 QLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS-----------IPAGAFDKLTNLQTLSLSTNQ-LQSVPHGA 174 (251)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSC-CSCCCTTT
T ss_pred CCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc-----------cCHHHcCcCcCCCEEECCCCc-CCccCHHH
Confidence 5555555555 2233332 23555555555555443221 222 45556667777777663 333432
Q ss_pred CCCCCCcceeeeccC
Q 043964 585 LGILPSLEKVIITYM 599 (713)
Q Consensus 585 l~~l~~L~~L~L~~~ 599 (713)
+..+++|+.|+|+++
T Consensus 175 ~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 175 FDRLGKLQTITLFGN 189 (251)
T ss_dssp TTTCTTCCEEECCSC
T ss_pred HhCCCCCCEEEeeCC
Confidence 666777777777653
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=5.3e-13 Score=132.78 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=132.9
Q ss_pred CceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccch-hhccCC
Q 043964 431 TSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPE-GIGKLI 508 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~ 508 (713)
...+.++++++. +..+|..+. .+|++|+|++|. +..++ ..+.++++|++|++++|. +..++. .+..++
T Consensus 14 ~~~~~l~~~~~~------l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKS------LDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCC------CSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred CCCeEEecCCCC------ccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCC
Confidence 457789999998 778887765 689999999999 76665 468999999999999998 665554 479999
Q ss_pred ccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCc-cccCCCCCcEEEeccCCCCCCCCC--C
Q 043964 509 NMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPN-WMMSLTNPRSLELILCENCNQLPP--L 585 (713)
Q Consensus 509 ~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~--l 585 (713)
+|++|++++|......+..++.+++|++|++..+.... +|. .+..+++|+.|+|++| .+..+|. +
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 151 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-----------LPSGVFDRLTKLKELRLNTN-QLQSIPAGAF 151 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC-----------cChhHhccCCcccEEECcCC-cCCccCHHHc
Confidence 99999999995544444567899999999998876442 443 4578999999999999 4556655 8
Q ss_pred CCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccc
Q 043964 586 GILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWML 630 (713)
Q Consensus 586 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 630 (713)
+.+++|+.|+|+++. +..++... ...+++|+.|++++.+
T Consensus 152 ~~l~~L~~L~L~~N~-l~~~~~~~-----~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQ-LQSVPHGA-----FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTT-----TTTCTTCCEEECCSCC
T ss_pred CcCcCCCEEECCCCc-CCccCHHH-----HhCCCCCCEEEeeCCc
Confidence 889999999998753 33333221 2367889999988753
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=3.6e-16 Score=170.93 Aligned_cols=122 Identities=23% Similarity=0.174 Sum_probs=64.3
Q ss_pred CCccccCCCCCcEEEeccCCCCCC-----C-CC-CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccc
Q 043964 558 FPNWMMSLTNPRSLELILCENCNQ-----L-PP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWML 630 (713)
Q Consensus 558 ~p~~~~~l~~L~~L~L~~~~~~~~-----l-~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 630 (713)
+|.++..+++|+.|+|++|. +.. + +. ...+++|+.|++++|. +...+..... .....+++|++|+++++.
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLC-RVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH-HHHHHCTTCCEEECTTCC
T ss_pred HHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHH-HHHhhCCCcceEECCCCC
Confidence 34555566777777777763 221 1 11 2346777777777652 2211000000 011246778888887653
Q ss_pred cccccccccccccccccccccccccccccccccCCC-----CCCCCCCCCCccEEEEEcCCc
Q 043964 631 ELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKA-----LPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 631 ~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~-----lp~~l~~l~~L~~L~i~~~C~ 687 (713)
+.......- ........++|++|++++|. +.. +|..+..+++|++|+++ +|.
T Consensus 296 -i~~~~~~~l--~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls-~n~ 352 (461)
T 1z7x_W 296 -LGDEGARLL--CETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQIS-NNR 352 (461)
T ss_dssp -CHHHHHHHH--HHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECC-SSB
T ss_pred -CchHHHHHH--HHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEcc-CCc
Confidence 221110000 00001133689999999985 442 34455667999999999 663
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=1e-13 Score=132.45 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=118.8
Q ss_pred chhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCC
Q 043964 455 NIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSL 534 (713)
Q Consensus 455 ~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L 534 (713)
....+++|++|++++|. +..+| .+..+++|++|++++|. +..+| .+..+++|++|++++|......|..++.+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 34788899999999998 88999 69999999999999995 76665 68999999999999996655578888999999
Q ss_pred CcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCcc
Q 043964 535 RTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEI 614 (713)
Q Consensus 535 ~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 614 (713)
++|++..+... ...|..+..+++|+.|+|++|..+..+|.+..+++|+.|+++++. +..+. .
T Consensus 115 ~~L~Ls~n~i~----------~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~-------~ 176 (197)
T 4ezg_A 115 TLLDISHSAHD----------DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR-------G 176 (197)
T ss_dssp CEEECCSSBCB----------GGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT-------T
T ss_pred CEEEecCCccC----------cHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH-------H
Confidence 99998887643 224677778999999999998657777778888888888888753 22111 1
Q ss_pred cccCcccceeeccc
Q 043964 615 IIAFPKLKSLTISW 628 (713)
Q Consensus 615 ~~~f~~L~~L~l~~ 628 (713)
...+++|+.|++++
T Consensus 177 l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 177 IEDFPKLNQLYAFS 190 (197)
T ss_dssp GGGCSSCCEEEECB
T ss_pred hccCCCCCEEEeeC
Confidence 22455666666554
No 103
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=6.6e-15 Score=166.30 Aligned_cols=283 Identities=12% Similarity=0.041 Sum_probs=155.2
Q ss_pred CceEEEEEEecCCCC-----CCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc
Q 043964 378 KKVCHLMLIIGEGAS-----FPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI 452 (713)
Q Consensus 378 ~~~r~lsl~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l 452 (713)
++++.|.+..+.... +......+++|++|.+.++..... ....++..+..+++|+.|++++|. +..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~------~~~l 235 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI--SPKDLETIARNCRSLVSVKVGDFE------ILEL 235 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC--CHHHHHHHHHHCTTCCEEECSSCB------GGGG
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc--CHHHHHHHHhhCCCCcEEeccCcc------HHHH
Confidence 445556555443221 111223466777777766653211 122344556667777777777766 5556
Q ss_pred CcchhccCcCCccccCCcccc---cccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCc-ccccC
Q 043964 453 PRNIEKLIHLKYLNLSCLTSI---RKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGR-MPAGI 528 (713)
Q Consensus 453 p~~i~~L~~Lr~L~L~~~~~i---~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~-~p~~i 528 (713)
|..+..+++|++|+++++... ...+..+..+++|+.|+++++. ...+|..+..+++|++|++++|..... ++..+
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 666777777777777643211 2334456667777777777654 566777777777888888887752111 12335
Q ss_pred cCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEecc----------CCCCCC--CCC-CCCCCCcceee
Q 043964 529 ARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELIL----------CENCNQ--LPP-LGILPSLEKVI 595 (713)
Q Consensus 529 ~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~----------~~~~~~--l~~-l~~l~~L~~L~ 595 (713)
+.+++|++|++..+- . ...++.....+++|+.|+|++ |..+.. ++. ...+|+|++|+
T Consensus 315 ~~~~~L~~L~L~~~~-~---------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 315 QKCPNLEVLETRNVI-G---------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp TTCTTCCEEEEEGGG-H---------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred HhCcCCCEEeccCcc-C---------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 677777777776221 1 112333444677888888884 544332 222 23477888888
Q ss_pred eccCccceEeCccccCCcccccCcccceeecccc---cccccccccccccccccccccccccccccccccc-CCC-CCCC
Q 043964 596 ITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWM---LELKEWNYGITRTGNAFINIMPRLSSLTIDSCPK-LKA-LPDH 670 (713)
Q Consensus 596 L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~---~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~-L~~-lp~~ 670 (713)
+. |..+.... +... ...+++|+.|.+.++ ..++..+...+ .+.....+++|++|++++|.. +.. .+..
T Consensus 385 l~-~~~l~~~~--~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~--~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 385 VY-VSDITNES--LESI--GTYLKNLCDFRLVLLDREERITDLPLDNG--VRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp EE-ESCCCHHH--HHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHH--HHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ee-cCCccHHH--HHHH--HhhCCCCcEEEEeecCCCccccCchHHHH--HHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 73 33221110 0000 113678888888743 33433211100 001123578899999887754 221 1111
Q ss_pred C-CCCCCccEEEEEcCCc
Q 043964 671 F-HQTTTLKELIIRSNCG 687 (713)
Q Consensus 671 l-~~l~~L~~L~i~~~C~ 687 (713)
+ ..+++|+.|+++ +|.
T Consensus 458 ~~~~~~~L~~L~L~-~n~ 474 (592)
T 3ogk_B 458 IGQYSPNVRWMLLG-YVG 474 (592)
T ss_dssp HHHSCTTCCEEEEC-SCC
T ss_pred HHHhCccceEeecc-CCC
Confidence 1 347889999998 775
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=4.1e-13 Score=134.43 Aligned_cols=146 Identities=19% Similarity=0.171 Sum_probs=104.5
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhcc
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGK 506 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 506 (713)
+..+++|++|++++|. +..+| .+..+++|++|+|++|. +..+|. +..+++|++|++++|. +..+|....
T Consensus 37 ~~~l~~L~~L~l~~n~------i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN------IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS- 105 (263)
T ss_dssp HHHHTTCSEEECTTSC------CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC-
T ss_pred hhhcCcCcEEECcCCC------cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc-
Confidence 4566778888888877 55565 57777888888888877 777776 7778888888888876 666765333
Q ss_pred CCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCC
Q 043964 507 LINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLG 586 (713)
Q Consensus 507 L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~ 586 (713)
++|++|++++| .+..+| .++.+++|+.|++..+.... +| .+..+++|+.|+|++| .+..++.+.
T Consensus 106 -~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~-----------~~-~l~~l~~L~~L~L~~N-~i~~~~~l~ 169 (263)
T 1xeu_A 106 -ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKS-----------IV-MLGFLSKLEVLDLHGN-EITNTGGLT 169 (263)
T ss_dssp -SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCB-----------CG-GGGGCTTCCEEECTTS-CCCBCTTST
T ss_pred -CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCC-----------Ch-HHccCCCCCEEECCCC-cCcchHHhc
Confidence 77888888877 344444 47777778877777665432 33 5667888888888887 444456678
Q ss_pred CCCCcceeeeccC
Q 043964 587 ILPSLEKVIITYM 599 (713)
Q Consensus 587 ~l~~L~~L~L~~~ 599 (713)
.+++|+.|+++++
T Consensus 170 ~l~~L~~L~l~~N 182 (263)
T 1xeu_A 170 RLKKVNWIDLTGQ 182 (263)
T ss_dssp TCCCCCEEEEEEE
T ss_pred cCCCCCEEeCCCC
Confidence 8888888888764
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.6e-13 Score=137.40 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=133.5
Q ss_pred cCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCC
Q 043964 429 KLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLI 508 (713)
Q Consensus 429 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 508 (713)
.+..+..++++++. +..++ .+..+.+|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..++
T Consensus 17 ~l~~l~~l~l~~~~------i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQS------VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTCSC------TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHHhcCCC------ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 34556777888888 66666 68899999999999998 99998 69999999999999998 888888 99999
Q ss_pred ccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCCCCCC
Q 043964 509 NMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPPLGIL 588 (713)
Q Consensus 509 ~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 588 (713)
+|++|++++| .+..+|.... ++|+.|++..+.... + ..+..+++|+.|+|++| .+..++.++.+
T Consensus 86 ~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L~~N~l~~-----------~-~~l~~l~~L~~L~Ls~N-~i~~~~~l~~l 149 (263)
T 1xeu_A 86 KLEELSVNRN-RLKNLNGIPS--ACLSRLFLDNNELRD-----------T-DSLIHLKNLEILSIRNN-KLKSIVMLGFL 149 (263)
T ss_dssp SCCEEECCSS-CCSCCTTCCC--SSCCEEECCSSCCSB-----------S-GGGTTCTTCCEEECTTS-CCCBCGGGGGC
T ss_pred CCCEEECCCC-ccCCcCcccc--CcccEEEccCCccCC-----------C-hhhcCcccccEEECCCC-cCCCChHHccC
Confidence 9999999999 4555665333 889999988876542 3 35778999999999998 46677788899
Q ss_pred CCcceeeeccCccceEeCccccCCcccccCcccceeeccccc
Q 043964 589 PSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWML 630 (713)
Q Consensus 589 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 630 (713)
++|+.|+++++. +..+ .....+++|+.|++++.+
T Consensus 150 ~~L~~L~L~~N~-i~~~-------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 150 SKLEVLDLHGNE-ITNT-------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCEEECTTSC-CCBC-------TTSTTCCCCCEEEEEEEE
T ss_pred CCCCEEECCCCc-Ccch-------HHhccCCCCCEEeCCCCc
Confidence 999999998754 2222 223468889999988753
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=7.3e-15 Score=165.93 Aligned_cols=285 Identities=11% Similarity=0.038 Sum_probs=164.2
Q ss_pred CCceEEEEEEecCCCCC-CccccC-CCc-eeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC
Q 043964 377 DKKVCHLMLIIGEGASF-PVSTCR-VKR-MRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP 453 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~-~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp 453 (713)
.+.++.|.+..+.+... ...+.. +++ |++|.+.++. .+....+..+...+++|++|+|++|.+++.. ...++
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~ 185 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKD-GKWLH 185 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE----EEEHHHHHHHHHHCTTCSEEECTTCEEECCC-SHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC----CcCHHHHHHHHhhCCCCCEEECccccccCcc-hhHHH
Confidence 34566677766543311 112222 333 8888887764 1122334454567888888888888742200 00133
Q ss_pred cchhccCcCCccccCCccccc-----ccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccC---Cccc
Q 043964 454 RNIEKLIHLKYLNLSCLTSIR-----KLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSL---GRMP 525 (713)
Q Consensus 454 ~~i~~L~~Lr~L~L~~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l---~~~p 525 (713)
..+..+++|++|++++|. +. .++..+..+++|++|++++|. +..+|..+..+++|++|.++.+... ...+
T Consensus 186 ~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 345667788888888776 43 455556677888888888876 6677877888888888888754322 2233
Q ss_pred ccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCC--CCC-CCCCCCcceeeecc----
Q 043964 526 AGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQ--LPP-LGILPSLEKVIITY---- 598 (713)
Q Consensus 526 ~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~-l~~l~~L~~L~L~~---- 598 (713)
..++.+++|+.|.+..+. ...+|..+..+++|++|+|++|. +.. ++. +..+++|+.|++++
T Consensus 264 ~~l~~~~~L~~L~l~~~~-----------~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMG-----------PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp SCCCCCTTCCEEEETTCC-----------TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred HHhhccccccccCccccc-----------hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCH
Confidence 456667777777655432 13367777778888888888886 321 111 46677777777742
Q ss_pred ---------CccceEeCcc-----------ccCCc------ccccCcccceeeccccccccccccccccccccccccccc
Q 043964 599 ---------MISVKRVGNE-----------FLGIE------IIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPR 652 (713)
Q Consensus 599 ---------~~~l~~~~~~-----------~~~~~------~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~ 652 (713)
|+.|+.+.-. ..... ....+++|++|.+ .+.++..-... .....+++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~------~l~~~~~~ 404 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLE------SIGTYLKN 404 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH------HHHHHCCS
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH------HHHhhCCC
Confidence 2222222111 00000 0113556666665 22222211100 00124788
Q ss_pred cccccccc---cccCCCCCCC------CCCCCCccEEEEEcCCch
Q 043964 653 LSSLTIDS---CPKLKALPDH------FHQTTTLKELIIRSNCGL 688 (713)
Q Consensus 653 L~~L~l~~---c~~L~~lp~~------l~~l~~L~~L~i~~~C~~ 688 (713)
|++|++++ |..++..|.. +..+++|+.|+++ .|..
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~-~~~~ 448 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY-LRQG 448 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE-CCGG
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe-cCCC
Confidence 99999984 5566665432 4458999999998 7764
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=2.3e-13 Score=155.94 Aligned_cols=159 Identities=20% Similarity=0.180 Sum_probs=101.6
Q ss_pred CCceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch
Q 043964 377 DKKVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI 456 (713)
Q Consensus 377 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 456 (713)
...++++++..+.....+.......+|+.+.+......... ...++..|..++.|++|+|++|. +..+|..+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~--~~~~~~~~~~l~~L~~L~Ls~n~------l~~l~~~~ 243 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR--MVMPKDSKYDDQLWHALDLSNLQ------IFNISANI 243 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSC------CSCCCGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc--eecChhhhccCCCCcEEECCCCC------CCCCChhh
Confidence 34567777766655543333333444444444332211111 12356668899999999999999 77899999
Q ss_pred hccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCc
Q 043964 457 EKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRT 536 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~ 536 (713)
..+.+|++|+|++|. +..+|.++++|++|++|+|++|. +..+|..++.|++|++|+|++| .+..+|..++.|++|++
T Consensus 244 ~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCC
T ss_pred cCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccE
Confidence 999999999999998 88999999999999999999998 7799999999999999999999 56789999999999999
Q ss_pred CCceecCCCC
Q 043964 537 FDEFHVSRGK 546 (713)
Q Consensus 537 L~~~~~~~~~ 546 (713)
|++.++....
T Consensus 321 L~L~~N~l~~ 330 (727)
T 4b8c_D 321 LGVEGNPLEK 330 (727)
T ss_dssp EECTTSCCCS
T ss_pred EeCCCCccCC
Confidence 9998887653
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=8.3e-13 Score=145.92 Aligned_cols=173 Identities=20% Similarity=0.176 Sum_probs=100.5
Q ss_pred ceEEEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhc
Q 043964 379 KVCHLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEK 458 (713)
Q Consensus 379 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 458 (713)
+++.|.+.++.+..++..+ +++|++|++++|.+. .++ ..+++|++|+|++|. +..+|. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~------~ip----~~l~~L~~L~Ls~N~------l~~ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI------SLP----ELPASLEYLDACDNR------LSTLPE-LPA 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS------CCC----CCCTTCCEEECCSSC------CSCCCC-CCT
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc------ccc----cccCCCCEEEccCCC------CCCcch-hhc
Confidence 4555555555555444433 256777777766532 111 335667777777776 445555 443
Q ss_pred cCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCC
Q 043964 459 LIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFD 538 (713)
Q Consensus 459 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 538 (713)
+|++|+|++|. +..+|. .+++|++|++++|. +..+|. .+++|++|++++| .+..+|. ++ ++|+.|+
T Consensus 121 --~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 121 --SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALD 186 (571)
T ss_dssp --TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEE
T ss_pred --CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCCEEE
Confidence 67777777766 666665 56677777777766 555665 4566777777776 3444665 44 6666666
Q ss_pred ceecCCCCcccCCCCCCccCCccccCCCCC-------cEEEeccCCCCCCCCC-CCCCCCcceeeeccC
Q 043964 539 EFHVSRGKAVDGHKGCNNVFPNWMMSLTNP-------RSLELILCENCNQLPP-LGILPSLEKVIITYM 599 (713)
Q Consensus 539 ~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L-------~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 599 (713)
+.++.... +|. +.. +| +.|+|++| .+..+|. +..+++|+.|+|+++
T Consensus 187 Ls~N~L~~-----------lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 187 VSTNLLES-----------LPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CCSSCCSS-----------CCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred CcCCCCCc-----------hhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 66654332 444 222 44 66777666 3445555 555666666666654
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=2.2e-13 Score=131.32 Aligned_cols=104 Identities=31% Similarity=0.473 Sum_probs=55.2
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc-hhccCcCCccccCCcccccccCcc
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN-IEKLIHLKYLNLSCLTSIRKLPEP 479 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~~i~~lp~~ 479 (713)
++|+.|.+.++.+. .+++..|..+++|++|++++|. +..+|.. +..+++|++|++++|. +..+|..
T Consensus 28 ~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLK------SLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCCcEEEcCCCccC------cCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEECCCCc-CCccCHh
Confidence 45666666655432 1122224555666666666665 3444432 3555666666666655 5555433
Q ss_pred -ccCCCCCcEEeccCccCccccchh-hccCCccceeeccCc
Q 043964 480 -LCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERT 518 (713)
Q Consensus 480 -i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 518 (713)
+..+++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC
Confidence 4556666666666655 4444443 455566666666555
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=3e-12 Score=125.28 Aligned_cols=124 Identities=26% Similarity=0.337 Sum_probs=61.7
Q ss_pred CceeEEEeCCCCcccchhhccc-CcchhccCcCCccccCCcccccccCcc-ccCCCCCcEEeccCccCccccchh-hccC
Q 043964 431 TSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKELPEG-IGKL 507 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L 507 (713)
++|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|.. +..+++|++|+|++|. +..+|.. +..+
T Consensus 40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l 111 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRL 111 (229)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcc
Confidence 445555555555 2232 3344555555555555555 4444422 3455555555555554 4444433 3445
Q ss_pred CccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--C
Q 043964 508 INMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--L 585 (713)
Q Consensus 508 ~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l 585 (713)
++|++|++++| .+.. +|..+..+++|+.|+|++| .+..+|. +
T Consensus 112 ~~L~~L~Ls~N-~l~~----------------------------------lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 155 (229)
T 3e6j_A 112 VHLKELFMCCN-KLTE----------------------------------LPRGIERLTHLTHLALDQN-QLKSIPHGAF 155 (229)
T ss_dssp TTCCEEECCSS-CCCS----------------------------------CCTTGGGCTTCSEEECCSS-CCCCCCTTTT
T ss_pred hhhCeEeccCC-cccc----------------------------------cCcccccCCCCCEEECCCC-cCCccCHHHH
Confidence 55555555554 2223 4444455556666666655 3334432 5
Q ss_pred CCCCCcceeeecc
Q 043964 586 GILPSLEKVIITY 598 (713)
Q Consensus 586 ~~l~~L~~L~L~~ 598 (713)
..+++|+.|+|++
T Consensus 156 ~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 156 DRLSSLTHAYLFG 168 (229)
T ss_dssp TTCTTCCEEECTT
T ss_pred hCCCCCCEEEeeC
Confidence 5566666666654
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=4.5e-12 Score=122.09 Aligned_cols=125 Identities=23% Similarity=0.315 Sum_probs=58.1
Q ss_pred CcCCccccCCcccccccCcc-ccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccCCcccc-cCcCCCCCCc
Q 043964 460 IHLKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSLGRMPA-GIARLTSLRT 536 (713)
Q Consensus 460 ~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~ 536 (713)
.+|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .++.+++|+.
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCE
Confidence 355555555555 4444432 4555555555555554 4444443 3455555555555552 222222 2344444444
Q ss_pred CCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeecc
Q 043964 537 FDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITY 598 (713)
Q Consensus 537 L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~ 598 (713)
|++..+.... ..+..+..+++|+.|+|++|. +..++. +..+++|+.|++++
T Consensus 105 L~L~~N~l~~----------~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 105 LALNTNQLQS----------LPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp EECCSSCCCC----------CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred EEcCCCcCcc----------cCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecC
Confidence 4443332211 011223445556666666552 223332 44555555555553
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=1e-13 Score=146.09 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=37.9
Q ss_pred HccCC-ceeEEEeCCCCcccchhhccc-Ccchhcc-----CcCCccccCCcccccccC-cc----ccCC-CCCcEEeccC
Q 043964 427 FEKLT-SLRVLNIGKWSISRWYFILEI-PRNIEKL-----IHLKYLNLSCLTSIRKLP-EP----LCEL-YNLEKLDISH 493 (713)
Q Consensus 427 ~~~~~-~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L-----~~Lr~L~L~~~~~i~~lp-~~----i~~L-~~L~~L~l~~ 493 (713)
|..++ +|++|+|++|.+ ... +..+..+ ++|++|+|++|. +...+ .. +..+ ++|++|++++
T Consensus 46 l~~~~~~L~~L~Ls~N~l------~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 118 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSL------GFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGW 118 (362)
T ss_dssp HHTCCTTCCEEECCSSCG------GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHhCCCceeEEECcCCCC------CHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcC
Confidence 44455 555555555552 221 2333333 555555555555 43322 11 2233 4555555555
Q ss_pred ccCccccch-h----hcc-CCccceeeccCc
Q 043964 494 CWYLKELPE-G----IGK-LINMKHLLNERT 518 (713)
Q Consensus 494 ~~~l~~lp~-~----i~~-L~~L~~L~l~~~ 518 (713)
|. +...+. . +.. .++|++|++++|
T Consensus 119 N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 119 ND-FSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp SC-GGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred Cc-CCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 55 333322 1 122 135555555555
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.4e-14 Score=160.83 Aligned_cols=202 Identities=14% Similarity=0.091 Sum_probs=140.2
Q ss_pred cCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcc--------cchhhcccCcchhccCcCCccc-cC
Q 043964 398 CRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSIS--------RWYFILEIPRNIEKLIHLKYLN-LS 468 (713)
Q Consensus 398 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~--------~~~~~~~lp~~i~~L~~Lr~L~-L~ 468 (713)
..+++|+.|.+++|. ... +|..+..+++|+.|+++++... ........|..++.|.+|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~------L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEK------STV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHH------HHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCChhh------HHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 567889999998885 233 4555888999999998665300 0001334567788888888888 55
Q ss_pred CcccccccCc------cccC--CCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCce
Q 043964 469 CLTSIRKLPE------PLCE--LYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEF 540 (713)
Q Consensus 469 ~~~~i~~lp~------~i~~--L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 540 (713)
.+. +..++. .+.. ...|++|++++|. +..+|. ++.|++|++|++++| .+..+|..++.+++|+.|++.
T Consensus 419 ~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 419 AAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQAS 494 (567)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECC
T ss_pred hcc-cchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECC
Confidence 543 333332 1111 1258899999987 788887 899999999999998 455888899999999999988
Q ss_pred ecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCC--CC-CCCCCCcceeeeccCccceEeCccccCCccccc
Q 043964 541 HVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQL--PP-LGILPSLEKVIITYMISVKRVGNEFLGIEIIIA 617 (713)
Q Consensus 541 ~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l--~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 617 (713)
++.... +| .+..+++|+.|+|++|. +..+ |. ++.+++|+.|+|+++. +..++..... ....
T Consensus 495 ~N~l~~-----------lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~--l~~~ 558 (567)
T 1dce_A 495 DNALEN-----------VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQER--LAEM 558 (567)
T ss_dssp SSCCCC-----------CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTH--HHHH
T ss_pred CCCCCC-----------Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHH--HHHH
Confidence 876542 66 78889999999999884 4444 44 8889999999998754 3322221111 1124
Q ss_pred Ccccceeec
Q 043964 618 FPKLKSLTI 626 (713)
Q Consensus 618 f~~L~~L~l 626 (713)
+|+|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 788888853
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=3.4e-14 Score=157.83 Aligned_cols=200 Identities=15% Similarity=0.154 Sum_probs=148.1
Q ss_pred ccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcc-------------cccccCccccCCCCCcEEe-ccC
Q 043964 428 EKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLT-------------SIRKLPEPLCELYNLEKLD-ISH 493 (713)
Q Consensus 428 ~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~-------------~i~~lp~~i~~L~~L~~L~-l~~ 493 (713)
..++.|+.|+|+++. +..+|+.|++|.+|+.|+++++. ....+|..++.|.+|+.|+ ++.
T Consensus 346 ~~~~~L~~L~Ls~n~------L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 346 ATDEQLFRCELSVEK------STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp STTTTSSSCCCCHHH------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred ccCccceeccCChhh------HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh
Confidence 467889999999999 88999999999999999997763 2455677788999999998 555
Q ss_pred ccCccccch------hhccC--CccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCC
Q 043964 494 CWYLKELPE------GIGKL--INMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSL 565 (713)
Q Consensus 494 ~~~l~~lp~------~i~~L--~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l 565 (713)
+. +..++. .+..+ ..|+.|++++| .+..+|. ++.+++|+.|++..+... .+|..+..+
T Consensus 420 n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~-----------~lp~~~~~l 485 (567)
T 1dce_A 420 AY-LDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR-----------ALPPALAAL 485 (567)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC-----------CCCGGGGGC
T ss_pred cc-cchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccccc-----------ccchhhhcC
Confidence 43 444443 12222 26899999999 5667887 999999999999887654 389999999
Q ss_pred CCCcEEEeccCCCCCCCCCCCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccccccccccccccccccc
Q 043964 566 TNPRSLELILCENCNQLPPLGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNA 645 (713)
Q Consensus 566 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~ 645 (713)
++|+.|+|++| .+..+|.++.+++|+.|+|+++. +..+. .......+++|+.|++++++ +...+.... .
T Consensus 486 ~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~----~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~----~ 554 (567)
T 1dce_A 486 RCLEVLQASDN-ALENVDGVANLPRLQELLLCNNR-LQQSA----AIQPLVSCPRLVLLNLQGNS-LCQEEGIQE----R 554 (567)
T ss_dssp TTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CCSSS----TTGGGGGCTTCCEEECTTSG-GGGSSSCTT----H
T ss_pred CCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCC-CCCCC----CcHHHhcCCCCCEEEecCCc-CCCCccHHH----H
Confidence 99999999999 45568889999999999999753 33331 01123478999999999864 444332211 1
Q ss_pred ccccccccccccc
Q 043964 646 FINIMPRLSSLTI 658 (713)
Q Consensus 646 ~~~~~p~L~~L~l 658 (713)
....+|+|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 1235889988853
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=6.5e-12 Score=122.03 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=62.0
Q ss_pred CceeEEEeCCCCcccchhhcccCc-chhccCcCCccccCCccccccc-CccccCCCCCcEEeccCccCccccchh-hccC
Q 043964 431 TSLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKYLNLSCLTSIRKL-PEPLCELYNLEKLDISHCWYLKELPEG-IGKL 507 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L 507 (713)
+.|+.|+|++|. +..+|. .+..+++|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|.. +..+
T Consensus 32 ~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSC------CCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCC
Confidence 345555555555 333332 44555555555555555 4333 3445555555555555554 4444443 3445
Q ss_pred CccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--C
Q 043964 508 INMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--L 585 (713)
Q Consensus 508 ~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l 585 (713)
++|++|++++|..... .|..+..+++|+.|+|++|. +..++. +
T Consensus 104 ~~L~~L~L~~N~l~~~----------------------------------~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 148 (220)
T 2v9t_B 104 FSLQLLLLNANKINCL----------------------------------RVDAFQDLHNLNLLSLYDNK-LQTIAKGTF 148 (220)
T ss_dssp TTCCEEECCSSCCCCC----------------------------------CTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred CCCCEEECCCCCCCEe----------------------------------CHHHcCCCCCCCEEECCCCc-CCEECHHHH
Confidence 5555555555522222 23344455566666666653 333332 5
Q ss_pred CCCCCcceeeecc
Q 043964 586 GILPSLEKVIITY 598 (713)
Q Consensus 586 ~~l~~L~~L~L~~ 598 (713)
..+++|+.|+|++
T Consensus 149 ~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 149 SPLRAIQTMHLAQ 161 (220)
T ss_dssp TTCTTCCEEECCS
T ss_pred hCCCCCCEEEeCC
Confidence 5566666666654
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=2.7e-14 Score=150.53 Aligned_cols=244 Identities=14% Similarity=0.101 Sum_probs=157.6
Q ss_pred HHHHHccCCceeEEEeCCCCcccchhhcccC-----cchhccC-cCCccccCCccccccc-CccccCC-----CCCcEEe
Q 043964 423 LKELFEKLTSLRVLNIGKWSISRWYFILEIP-----RNIEKLI-HLKYLNLSCLTSIRKL-PEPLCEL-----YNLEKLD 490 (713)
Q Consensus 423 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-----~~i~~L~-~Lr~L~L~~~~~i~~l-p~~i~~L-----~~L~~L~ 490 (713)
++.++...++|++|+|++|. +...+ ..+..++ +|++|+|++|. +... +..+..+ ++|++|+
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHhCCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEE
Confidence 56667777779999999999 44444 5677888 89999999998 6654 4556654 9999999
Q ss_pred ccCccCcccc-chh----hccC-CccceeeccCcccCCccccc----CcC-CCCCCcCCceecCCCCcccCCCCCCccCC
Q 043964 491 ISHCWYLKEL-PEG----IGKL-INMKHLLNERTDSLGRMPAG----IAR-LTSLRTFDEFHVSRGKAVDGHKGCNNVFP 559 (713)
Q Consensus 491 l~~~~~l~~l-p~~----i~~L-~~L~~L~l~~~~~l~~~p~~----i~~-l~~L~~L~~~~~~~~~ei~~~~~~~~~~p 559 (713)
+++|. +... +.. +..+ ++|++|++++|......+.. +.. .++|++|++..+..... ....++
T Consensus 87 Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------~~~~l~ 159 (362)
T 3goz_A 87 LSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK------SSDELI 159 (362)
T ss_dssp CCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS------CHHHHH
T ss_pred CcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH------HHHHHH
Confidence 99998 5543 333 4445 89999999999643332222 334 36999999988764420 012344
Q ss_pred ccccCCC-CCcEEEeccCCCCCCCC-----CCCCC-CCcceeeeccCccceEeCccccCCccccc-Ccccceeecccccc
Q 043964 560 NWMMSLT-NPRSLELILCENCNQLP-----PLGIL-PSLEKVIITYMISVKRVGNEFLGIEIIIA-FPKLKSLTISWMLE 631 (713)
Q Consensus 560 ~~~~~l~-~L~~L~L~~~~~~~~l~-----~l~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~~~~-f~~L~~L~l~~~~~ 631 (713)
.++..++ +|+.|+|++|......+ .+..+ ++|+.|+|+++. +...+..... ..... .++|+.|+++++.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~-~~l~~~~~~L~~L~Ls~N~- 236 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELA-YIFSSIPNHVVSLNLCLNC- 236 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHH-HHHHHSCTTCCEEECCSSC-
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHH-HHHhcCCCCceEEECcCCC-
Confidence 5555565 99999999994322222 13455 499999999764 2221111000 00112 3589999998763
Q ss_pred ccccccccccccccccccccccccccccccc-------cCCCCCCCCCCCCCccEEEEEcCCc
Q 043964 632 LKEWNYGITRTGNAFINIMPRLSSLTIDSCP-------KLKALPDHFHQTTTLKELIIRSNCG 687 (713)
Q Consensus 632 l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~-------~L~~lp~~l~~l~~L~~L~i~~~C~ 687 (713)
+....... .......+++|+.|++++|. .+..++..+..+++|+.|+++ +++
T Consensus 237 l~~~~~~~---l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~-~N~ 295 (362)
T 3goz_A 237 LHGPSLEN---LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN-GKE 295 (362)
T ss_dssp CCCCCHHH---HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT-SCB
T ss_pred CCcHHHHH---HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC-CCc
Confidence 33322100 00113467899999999985 133445566778889999998 443
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.33 E-value=4e-14 Score=159.93 Aligned_cols=134 Identities=15% Similarity=0.117 Sum_probs=74.3
Q ss_pred CCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccc------
Q 043964 399 RVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTS------ 472 (713)
Q Consensus 399 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~------ 472 (713)
.+++|++|.+.++.. .+....+..+...+++|++|++++|.. +..+|..+..+++|++|+++.+..
T Consensus 182 ~~~~L~~L~l~~~~~---~~~~~~l~~l~~~~~~L~~L~L~~~~~-----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 182 TYTSLVSLNISCLAS---EVSFSALERLVTRCPNLKSLKLNRAVP-----LEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp TCCCCCEEECTTCCS---CCCHHHHHHHHHHCTTCCEEECCTTSC-----HHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred cCCcCcEEEecccCC---cCCHHHHHHHHHhCCCCcEEecCCCCc-----HHHHHHHHhcCCcceEcccccccCccchhh
Confidence 566777777776630 112233444455667777777777632 334555566666666665433310
Q ss_pred ------------------------ccccCccccCCCCCcEEeccCccCccc--cchhhccCCccceeeccCcccCCcccc
Q 043964 473 ------------------------IRKLPEPLCELYNLEKLDISHCWYLKE--LPEGIGKLINMKHLLNERTDSLGRMPA 526 (713)
Q Consensus 473 ------------------------i~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~ 526 (713)
...+|..+..+++|++|++++|. +.. ++..+.++++|++|++.+|.....++.
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 22344444456777788887776 432 233355777788888777622122222
Q ss_pred cCcCCCCCCcCCcee
Q 043964 527 GIARLTSLRTFDEFH 541 (713)
Q Consensus 527 ~i~~l~~L~~L~~~~ 541 (713)
....+++|++|++..
T Consensus 333 l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 333 LASTCKDLRELRVFP 347 (594)
T ss_dssp HHHHCTTCCEEEEEC
T ss_pred HHHhCCCCCEEEEec
Confidence 223467777777643
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=1.5e-12 Score=120.81 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=78.3
Q ss_pred ccCCceeEEEeCCCCcccchhhc--ccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccc-cchhh
Q 043964 428 EKLTSLRVLNIGKWSISRWYFIL--EIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKE-LPEGI 504 (713)
Q Consensus 428 ~~~~~Lr~L~L~~~~~~~~~~~~--~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~i 504 (713)
...+.|++|++++|. +. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|. +.. +|..+
T Consensus 21 ~~~~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 91 (168)
T 2ell_A 21 RTPAAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDMLA 91 (168)
T ss_dssp SCTTSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHH
T ss_pred CCcccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHHHH
Confidence 345778889998888 54 677778888889999998888 7777 668888899999998888 555 77777
Q ss_pred ccCCccceeeccCcccCCccc--ccCcCCCCCCcCCceec
Q 043964 505 GKLINMKHLLNERTDSLGRMP--AGIARLTSLRTFDEFHV 542 (713)
Q Consensus 505 ~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~ 542 (713)
..+++|++|++++| .+..+| ..++.+++|+.|++..+
T Consensus 92 ~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 92 EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC
Confidence 77888999988888 444444 45555555555555544
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=1.7e-12 Score=127.11 Aligned_cols=143 Identities=25% Similarity=0.382 Sum_probs=107.3
Q ss_pred EEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc-chhccCc
Q 043964 383 LMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR-NIEKLIH 461 (713)
Q Consensus 383 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~ 461 (713)
+.........+|..+ .++|+.|.+++|.+.. +.+..|..+++|++|+|++|. +..+|. .+..+++
T Consensus 24 v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI--PTNAQILYLHDNQITK------LEPGVFDSLINLKELYLGSNQ------LGALPVGVFDSLTQ 89 (229)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTT
T ss_pred eEccCCCcCccCCCC--CCCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCCCC------CCCcChhhcccCCC
Confidence 333333444445443 3889999999997532 233447889999999999999 667775 4689999
Q ss_pred CCccccCCcccccccCcc-ccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCccc-ccCcCCCCCCcCCc
Q 043964 462 LKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMP-AGIARLTSLRTFDE 539 (713)
Q Consensus 462 Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~ 539 (713)
|++|+|++|. +..+|.. +..+++|++|++++|. +..+|..+..+++|++|++++| .+..+| ..+..+++|+.|++
T Consensus 90 L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 90 LTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEe
Confidence 9999999998 8888754 6899999999999998 8899999999999999999998 344444 33455555555544
Q ss_pred eec
Q 043964 540 FHV 542 (713)
Q Consensus 540 ~~~ 542 (713)
.++
T Consensus 167 ~~N 169 (229)
T 3e6j_A 167 FGN 169 (229)
T ss_dssp TTS
T ss_pred eCC
Confidence 433
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=6.8e-12 Score=121.86 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=51.6
Q ss_pred ceeEEEeCCCCcccchhhcccC--cchhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCccccchh-hccC
Q 043964 432 SLRVLNIGKWSISRWYFILEIP--RNIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELPEG-IGKL 507 (713)
Q Consensus 432 ~Lr~L~L~~~~~~~~~~~~~lp--~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L 507 (713)
.+++|+|++|. +..++ ..+..+++|++|+|++|. +..++. .+..+++|++|++++|. +..+|.. +..+
T Consensus 33 ~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 104 (220)
T 2v70_A 33 YTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGL 104 (220)
T ss_dssp TCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTC
T ss_pred CCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCC
Confidence 44566666665 33432 225556666666666655 554443 45566666666666655 4444432 5556
Q ss_pred CccceeeccCcccCCcccccCcCCCCCCcCCce
Q 043964 508 INMKHLLNERTDSLGRMPAGIARLTSLRTFDEF 540 (713)
Q Consensus 508 ~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 540 (713)
++|++|++++|......|..+..+++|+.|++.
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 666666666553322223334444444444433
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=1.8e-14 Score=162.73 Aligned_cols=205 Identities=14% Similarity=0.137 Sum_probs=104.1
Q ss_pred CceEEEEEEecCCCCC-Ccccc-CCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc
Q 043964 378 KKVCHLMLIIGEGASF-PVSTC-RVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN 455 (713)
Q Consensus 378 ~~~r~lsl~~~~~~~~-~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 455 (713)
++++++.+.++..... +..+. .+++|++|.+.+|. .+....++.++..+++|++|+|++|.+++.. ...++..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-~~~l~~~ 179 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESDVDDVS-GHWLSHF 179 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCEEECCC-GGGGGGS
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-hHHHHHH
Confidence 4566666665543311 11222 46677777777663 1122234454556777777777777632100 1112233
Q ss_pred hhccCcCCccccCCcc-cc--cccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCccc------CCcccc
Q 043964 456 IEKLIHLKYLNLSCLT-SI--RKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDS------LGRMPA 526 (713)
Q Consensus 456 i~~L~~Lr~L~L~~~~-~i--~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~------l~~~p~ 526 (713)
...+++|++|++++|. .+ ..++..+..+++|++|++++|..+..+|..+.++++|++|.++.+.. +..++.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 3355677777777664 11 12222234467777777777755666666677777777777655421 112233
Q ss_pred cCcCCCCCCcCC-ceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCC--CCC-CCCCCCcceeeeccC
Q 043964 527 GIARLTSLRTFD-EFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQ--LPP-LGILPSLEKVIITYM 599 (713)
Q Consensus 527 ~i~~l~~L~~L~-~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~-l~~l~~L~~L~L~~~ 599 (713)
.++++++|+.|. +.... ...+|..+..+++|+.|+|++|. +.. ++. +..+++|+.|++++|
T Consensus 260 ~l~~~~~L~~Ls~~~~~~-----------~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAV-----------PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHTCTTCCEEECCBTCC-----------GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhcCCCcccccCCcccc-----------hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 344555555541 11110 12234444455666666666664 221 111 344556666665543
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=2.3e-12 Score=125.24 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=105.2
Q ss_pred EEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhccc-CcchhccCcCC
Q 043964 385 LIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLK 463 (713)
Q Consensus 385 l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr 463 (713)
..+.....+|..+. ++|+.|.+.+|.+. .+++..|..+++|++|+|++|. +..+ |..+..+++|+
T Consensus 18 c~~~~l~~iP~~l~--~~l~~L~l~~n~i~------~i~~~~~~~l~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 18 CRGKGLTEIPTNLP--ETITEIRLEQNTIK------VIPPGAFSPYKKLRRIDLSNNQ------ISELAPDAFQGLRSLN 83 (220)
T ss_dssp CTTSCCSSCCSSCC--TTCCEEECCSSCCC------EECTTSSTTCTTCCEEECCSSC------CCEECTTTTTTCSSCC
T ss_pred cCCCCcCcCCCccC--cCCCEEECCCCcCC------CcCHhHhhCCCCCCEEECCCCc------CCCcCHHHhhCCcCCC
Confidence 33334444444433 68999999998743 2233447889999999999999 5555 77899999999
Q ss_pred ccccCCcccccccCcc-ccCCCCCcEEeccCccCcccc-chhhccCCccceeeccCcccCCcccccCcCCCCCCcCCcee
Q 043964 464 YLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKEL-PEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFH 541 (713)
Q Consensus 464 ~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 541 (713)
+|+|++|. +..+|.. +..+++|++|+|++|. +..+ |..+..+++|++|++++|......+..+..+++|+.|++.+
T Consensus 84 ~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 84 SLVLYGNK-ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCc-CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 99999999 8888865 5889999999999998 6655 56689999999999999943333233455566665555544
Q ss_pred c
Q 043964 542 V 542 (713)
Q Consensus 542 ~ 542 (713)
+
T Consensus 162 N 162 (220)
T 2v9t_B 162 N 162 (220)
T ss_dssp S
T ss_pred C
Confidence 3
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=120.01 Aligned_cols=145 Identities=17% Similarity=0.120 Sum_probs=87.8
Q ss_pred eEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccC--ccccCCCCCcEEeccCccCccccch-hhccCCcc
Q 043964 434 RVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLP--EPLCELYNLEKLDISHCWYLKELPE-GIGKLINM 510 (713)
Q Consensus 434 r~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L 510 (713)
+.++++++. +..+|..+. ..+++|+|++|. +..++ ..+..+++|++|++++|. +..+|. .+..+++|
T Consensus 14 ~~l~~s~n~------l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQK------LNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSC------CSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CEeEeCCCC------cccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCC
Confidence 356666666 555665543 245677777776 66653 236667777777777776 555544 46777777
Q ss_pred ceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCC
Q 043964 511 KHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILP 589 (713)
Q Consensus 511 ~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~ 589 (713)
++|++++|......|..++.+++|++|++..+... ...|..+..+++|+.|+|++|......|. +..++
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT----------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC----------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC----------eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 77777777443333344666777777776665533 12355566677777777777633322233 66677
Q ss_pred Ccceeeecc
Q 043964 590 SLEKVIITY 598 (713)
Q Consensus 590 ~L~~L~L~~ 598 (713)
+|+.|+|++
T Consensus 154 ~L~~L~L~~ 162 (220)
T 2v70_A 154 SLSTLNLLA 162 (220)
T ss_dssp TCCEEECCS
T ss_pred CCCEEEecC
Confidence 777777765
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=2.3e-12 Score=116.96 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=67.1
Q ss_pred cCCceeEEEeCCCCcccchhhc--ccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccc-cchhhc
Q 043964 429 KLTSLRVLNIGKWSISRWYFIL--EIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKE-LPEGIG 505 (713)
Q Consensus 429 ~~~~Lr~L~L~~~~~~~~~~~~--~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~i~ 505 (713)
..++|+.|++++|. +. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|. +.. +|..+.
T Consensus 15 ~~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~ 85 (149)
T 2je0_A 15 TPSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAE 85 (149)
T ss_dssp CGGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHH
T ss_pred CCccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhh
Confidence 34567777777777 44 566667777777777777776 6666 457777777777777776 444 666666
Q ss_pred cCCccceeeccCcccCCccc--ccCcCCCCCCcCCceec
Q 043964 506 KLINMKHLLNERTDSLGRMP--AGIARLTSLRTFDEFHV 542 (713)
Q Consensus 506 ~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~ 542 (713)
.+++|++|++++|. +..+| ..++.+++|++|++.++
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence 67777777777773 33332 44444555554444433
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=5e-12 Score=118.20 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=42.4
Q ss_pred ccCCceeEEEeCCCCcccchhhcccCcchhccC-cCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhh-c
Q 043964 428 EKLTSLRVLNIGKWSISRWYFILEIPRNIEKLI-HLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGI-G 505 (713)
Q Consensus 428 ~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~-~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i-~ 505 (713)
..+.+|++|++++|. +..+|. +..+. +|++|++++|. +..+ ..++.+++|++|++++|. +..+|..+ .
T Consensus 16 ~~~~~L~~L~l~~n~------l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~ 85 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK------IPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQ 85 (176)
T ss_dssp ECTTSCEEEECTTSC------CCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred CCcCCceEEEeeCCC------CchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhh
Confidence 344555555555555 333332 33333 55555555555 5554 345555555555555555 44555443 5
Q ss_pred cCCccceeeccCc
Q 043964 506 KLINMKHLLNERT 518 (713)
Q Consensus 506 ~L~~L~~L~l~~~ 518 (713)
.+++|++|++++|
T Consensus 86 ~l~~L~~L~L~~N 98 (176)
T 1a9n_A 86 ALPDLTELILTNN 98 (176)
T ss_dssp HCTTCCEEECCSC
T ss_pred cCCCCCEEECCCC
Confidence 5555555555555
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=6.5e-12 Score=116.44 Aligned_cols=107 Identities=25% Similarity=0.257 Sum_probs=55.7
Q ss_pred HccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccc-cCccccCCCCCcEEeccCccCccccc--hh
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK-LPEPLCELYNLEKLDISHCWYLKELP--EG 503 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp--~~ 503 (713)
+..+++|++|++++|. +..+ ..+..+++|++|++++|. +.. +|..+..+++|++|++++|. +..+| ..
T Consensus 45 ~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 115 (168)
T 2ell_A 45 TAEFVNLEFLSLINVG------LISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEP 115 (168)
T ss_dssp CGGGGGCCEEEEESSC------CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGG
T ss_pred HHhCCCCCEEeCcCCC------CCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCCc-cCcchhHHH
Confidence 3445555555555555 3333 445555555555555555 443 44444445555555555554 44444 34
Q ss_pred hccCCccceeeccCcccCCcccc----cCcCCCCCCcCCceecC
Q 043964 504 IGKLINMKHLLNERTDSLGRMPA----GIARLTSLRTFDEFHVS 543 (713)
Q Consensus 504 i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~~~~~ 543 (713)
+..+++|++|++++|. +..+|. .+..+++|+.|++..+.
T Consensus 116 l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 116 LKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5555555555555552 233333 45555555555555544
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=2.2e-11 Score=128.01 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=113.1
Q ss_pred eEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc-hh-ccCcCCccccCCcccccccC-ccc
Q 043964 404 RSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN-IE-KLIHLKYLNLSCLTSIRKLP-EPL 480 (713)
Q Consensus 404 r~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~-~L~~Lr~L~L~~~~~i~~lp-~~i 480 (713)
+++.+.++.+.. ++. .-...+++|+|++|. +..++.. +. .+.+|++|+|++|. +..+| ..+
T Consensus 21 ~~l~c~~~~l~~------iP~---~~~~~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~ 84 (361)
T 2xot_A 21 NILSCSKQQLPN------VPQ---SLPSYTALLDLSHNN------LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAF 84 (361)
T ss_dssp TEEECCSSCCSS------CCS---SCCTTCSEEECCSSC------CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTT
T ss_pred CEEEeCCCCcCc------cCc---cCCCCCCEEECCCCC------CCccChhhhhhcccccCEEECCCCc-CCccChhhc
Confidence 567777765322 111 123457888888888 5566544 44 78888888888888 77776 458
Q ss_pred cCCCCCcEEeccCccCccccch-hhccCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCC
Q 043964 481 CELYNLEKLDISHCWYLKELPE-GIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFP 559 (713)
Q Consensus 481 ~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p 559 (713)
..+++|++|+|++|. +..+|. .+..+++|++|++++|......|..+..+++|+.|++..+.... +|
T Consensus 85 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-----------l~ 152 (361)
T 2xot_A 85 VPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-----------FP 152 (361)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-----------CC
T ss_pred cCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-----------eC
Confidence 888888888888887 666665 47888888888888885544446677888888888887765442 55
Q ss_pred ccc----cCCCCCcEEEeccCCCCCCCCC--CCCCCC--cceeeecc
Q 043964 560 NWM----MSLTNPRSLELILCENCNQLPP--LGILPS--LEKVIITY 598 (713)
Q Consensus 560 ~~~----~~l~~L~~L~L~~~~~~~~l~~--l~~l~~--L~~L~L~~ 598 (713)
..+ ..+++|+.|+|++| .+..+|. +..++. |+.|+|.+
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp GGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred HHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecC
Confidence 543 45778888888877 4445553 455555 36666664
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=1.5e-11 Score=129.39 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=115.1
Q ss_pred EEEEEecCCCCCCccccCCCceeEEEecCCcCCCcchhhhHHHHHHc-cCCceeEEEeCCCCcccchhhcccC-cchhcc
Q 043964 382 HLMLIIGEGASFPVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFE-KLTSLRVLNIGKWSISRWYFILEIP-RNIEKL 459 (713)
Q Consensus 382 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L 459 (713)
.+.+.++....+|..+ .+.++.|++++|.+. .+++..|. .+++|++|+|++|. +..++ ..+..+
T Consensus 22 ~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~------~l~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l 87 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL--PSYTALLDLSHNNLS------RLRAEWTPTRLTNLHSLLLSHNH------LNFISSEAFVPV 87 (361)
T ss_dssp EEECCSSCCSSCCSSC--CTTCSEEECCSSCCC------EECTTSSSSCCTTCCEEECCSSC------CCEECTTTTTTC
T ss_pred EEEeCCCCcCccCccC--CCCCCEEECCCCCCC------ccChhhhhhcccccCEEECCCCc------CCccChhhccCC
Confidence 3444444455545443 246788888888642 22233355 78888899998888 55655 468888
Q ss_pred CcCCccccCCcccccccCc-cccCCCCCcEEeccCccCcccc-chhhccCCccceeeccCcccCCcccccC----cCCCC
Q 043964 460 IHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKEL-PEGIGKLINMKHLLNERTDSLGRMPAGI----ARLTS 533 (713)
Q Consensus 460 ~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i----~~l~~ 533 (713)
++|++|+|++|. +..+|. .+..+.+|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+ ..+++
T Consensus 88 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 88 PNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPK 164 (361)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTT
T ss_pred CCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCc
Confidence 889999998888 777764 57888888999998887 5555 566888888889988888 555666543 56888
Q ss_pred CCcCCceecCCCCcccCCCCCCccCC-ccccCCCC--CcEEEeccCC
Q 043964 534 LRTFDEFHVSRGKAVDGHKGCNNVFP-NWMMSLTN--PRSLELILCE 577 (713)
Q Consensus 534 L~~L~~~~~~~~~ei~~~~~~~~~~p-~~~~~l~~--L~~L~L~~~~ 577 (713)
|+.|++..+.... +| ..+..+++ |+.|+|++|.
T Consensus 165 L~~L~L~~N~l~~-----------l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 165 LMLLDLSSNKLKK-----------LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCEEECCSSCCCC-----------CCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCEEECCCCCCCc-----------cCHHHhhhccHhhcceEEecCCC
Confidence 8888887765432 34 33445555 4778888874
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=7e-12 Score=117.19 Aligned_cols=131 Identities=21% Similarity=0.192 Sum_probs=102.1
Q ss_pred cccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccc
Q 043964 396 STCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK 475 (713)
Q Consensus 396 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~ 475 (713)
.+.++.+|+.|.+.+|.+... +.+....++|++|+|++|. +..+ ..+..+++|++|++++|. +..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-------~~~~~~~~~L~~L~Ls~N~------l~~~-~~l~~l~~L~~L~Ls~N~-l~~ 78 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-------ENLGATLDQFDAIDFSDNE------IRKL-DGFPLLRRLKTLLVNNNR-ICR 78 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-------CCGGGGTTCCSEEECCSSC------CCEE-CCCCCCSSCCEEECCSSC-CCE
T ss_pred hcCCcCCceEEEeeCCCCchh-------HHhhhcCCCCCEEECCCCC------CCcc-cccccCCCCCEEECCCCc-ccc
Confidence 445678899999998875321 2223334489999999999 5555 578889999999999998 888
Q ss_pred cCccc-cCCCCCcEEeccCccCccccch--hhccCCccceeeccCcccCCccccc----CcCCCCCCcCCceecC
Q 043964 476 LPEPL-CELYNLEKLDISHCWYLKELPE--GIGKLINMKHLLNERTDSLGRMPAG----IARLTSLRTFDEFHVS 543 (713)
Q Consensus 476 lp~~i-~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~l~~L~~L~~~~~~ 543 (713)
+|..+ +.+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|++..+.
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88665 889999999999998 788887 78899999999999984 4456654 7778888888877654
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=9.1e-12 Score=112.90 Aligned_cols=126 Identities=25% Similarity=0.273 Sum_probs=85.7
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccc-cCc
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK-LPE 478 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~-lp~ 478 (713)
.++|+.|.+.+|.+... . .+..+..+++|++|++++|. +..+ ..++.+++|++|++++|. +.. +|.
T Consensus 16 ~~~l~~L~l~~n~l~~~----~-~~~~~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG----K-LEGLTDEFEELEFLSTINVG------LTSI-ANLPKLNKLKKLELSDNR-VSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTT----B-CCSCCTTCTTCCEEECTTSC------CCCC-TTCCCCTTCCEEECCSSC-CCSCTHH
T ss_pred CccCeEEEccCCcCChh----H-HHHHHhhcCCCcEEECcCCC------CCCc-hhhhcCCCCCEEECCCCc-ccchHHH
Confidence 46677777777754211 1 12235677888888888887 4444 567778888888888887 655 776
Q ss_pred cccCCCCCcEEeccCccCccccc--hhhccCCccceeeccCcccCCcccc----cCcCCCCCCcCCce
Q 043964 479 PLCELYNLEKLDISHCWYLKELP--EGIGKLINMKHLLNERTDSLGRMPA----GIARLTSLRTFDEF 540 (713)
Q Consensus 479 ~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~~ 540 (713)
.++.+++|++|++++|. +..+| ..++.+++|++|++++|. +...|. .++.+++|+.|++.
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 66678888888888887 66654 667888888888888873 344443 56667777776653
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=7.6e-11 Score=111.78 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=54.7
Q ss_pred eEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCcc--ccCCCCCcEEeccCccCcccc-chhhccCCcc
Q 043964 434 RVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEP--LCELYNLEKLDISHCWYLKEL-PEGIGKLINM 510 (713)
Q Consensus 434 r~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L 510 (713)
++++++++. +..+|..+.. +|++|++++|. +..+|.. ++.+++|++|++++|. +..+ |..+..+++|
T Consensus 11 ~~l~~s~~~------l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRG------LKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSC------CSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTC
T ss_pred CEEEcCCCC------cCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccC
Confidence 456666666 5555554433 66666666665 5555542 5666666666666665 4333 4556666666
Q ss_pred ceeeccCcccCCcccccCcCCCCCCcCCceec
Q 043964 511 KHLLNERTDSLGRMPAGIARLTSLRTFDEFHV 542 (713)
Q Consensus 511 ~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 542 (713)
++|++++|......|..++.+++|++|++..+
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 66666666332222233444444444444443
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=2.5e-11 Score=139.15 Aligned_cols=117 Identities=21% Similarity=0.144 Sum_probs=98.8
Q ss_pred hcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccC
Q 043964 449 ILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGI 528 (713)
Q Consensus 449 ~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 528 (713)
+...|..+..+.+|++|+|++|. +..+|..+.++++|++|+|++|. +..+|..+++|++|++|+|++|. +..+|..+
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~ 289 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAEL 289 (727)
T ss_dssp ---------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSG
T ss_pred eecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhh
Confidence 33457788999999999999999 88999999999999999999998 77999999999999999999995 55889999
Q ss_pred cCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCC
Q 043964 529 ARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENC 579 (713)
Q Consensus 529 ~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 579 (713)
+.|++|++|++..+... .+|..+..+++|+.|+|++|...
T Consensus 290 ~~l~~L~~L~L~~N~l~-----------~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-----------TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGGTTCSEEECCSSCCC-----------CCCSSTTSCTTCCCEECTTSCCC
T ss_pred cCCCCCCEEECCCCCCC-----------ccChhhhcCCCccEEeCCCCccC
Confidence 99999999999887644 38888999999999999999643
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=1.8e-10 Score=109.22 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=39.3
Q ss_pred EEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccch-hhccCCcccee
Q 043964 435 VLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPE-GIGKLINMKHL 513 (713)
Q Consensus 435 ~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L 513 (713)
+++++++. +..+|..+. .+|++|+|++|. +..+|..+..+++|++|++++|. +..+|. .+..+++|++|
T Consensus 14 ~l~~~~~~------l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 14 VVRCSNKG------LKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp EEECTTSC------CSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred EEEcCCCC------CCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEE
Confidence 45555555 444554332 355555555555 55555555555555555555555 444432 35555555555
Q ss_pred eccCc
Q 043964 514 LNERT 518 (713)
Q Consensus 514 ~l~~~ 518 (713)
++++|
T Consensus 84 ~Ls~N 88 (193)
T 2wfh_A 84 ILSYN 88 (193)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55555
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=3.9e-13 Score=128.44 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=78.7
Q ss_pred HccCCceeEEEeCCCCcccc-hhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhc
Q 043964 427 FEKLTSLRVLNIGKWSISRW-YFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIG 505 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~-~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 505 (713)
+.....+..++++.+.+.+. ..+..+|..+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence 34445555555554443221 0134444567777777777777776 66676 67777777777777776 666776666
Q ss_pred cCCccceeeccCcccCCcccccCcCCCCCCcCCceecCCCCcccCCCCCCccCC--ccccCCCCCcEEEeccC
Q 043964 506 KLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFP--NWMMSLTNPRSLELILC 576 (713)
Q Consensus 506 ~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p--~~~~~l~~L~~L~L~~~ 576 (713)
.+++|++|++++| .+..+| .++.+++|+.|++..+.... +| ..+..+++|+.|++++|
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~-----------~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNNKITN-----------WGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEEECCC-----------HHHHHHHTTTTTCSEEEECSC
T ss_pred cCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCCcCCc-----------hhHHHHHhcCCCCCEEEecCC
Confidence 6677777777776 333444 45555666666655544321 12 23445666666666665
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=5.2e-10 Score=105.97 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=101.0
Q ss_pred CCccccCCcccccccCccccCCCCCcEEeccCccCccccchh--hccCCccceeeccCcccCCcccccCcCCCCCCcCCc
Q 043964 462 LKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEG--IGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDE 539 (713)
Q Consensus 462 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~ 539 (713)
-++++++++. ++.+|..+.. +|++|++++|. +..+|.. +..+++|++|++++|......|..++.+++|++|++
T Consensus 10 ~~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRG-LKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSC-CSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCC-cCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3789999998 8999987764 99999999998 7777764 899999999999999666556788999999999999
Q ss_pred eecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC-CCCCCCcceeeeccC
Q 043964 540 FHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP-LGILPSLEKVIITYM 599 (713)
Q Consensus 540 ~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 599 (713)
..+... ...|..+..+++|+.|+|++|......|. ++.+++|+.|+|++.
T Consensus 86 s~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 86 GENKIK----------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CSCCCC----------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCcCC----------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 887654 22455577899999999999854444444 788999999999863
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.05 E-value=8.3e-10 Score=104.55 Aligned_cols=123 Identities=14% Similarity=0.082 Sum_probs=99.2
Q ss_pred CCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCcee
Q 043964 462 LKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFH 541 (713)
Q Consensus 462 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 541 (713)
-++++++++. +..+|..+. .+|++|++++|. +..+|..+..+++|++|++++|......+..+..+++|++|++..
T Consensus 12 ~~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKG-LKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCC-CCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 3678999988 999998764 699999999998 889999999999999999999955444446788999999999888
Q ss_pred cCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccC
Q 043964 542 VSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITYM 599 (713)
Q Consensus 542 ~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~ 599 (713)
+.... ..|..+..+++|+.|+|++| .+..+|. +..+++|+.|+|++.
T Consensus 88 N~l~~----------i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 NRLRC----------IPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SCCCB----------CCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CccCE----------eCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 76542 23446778899999999988 4555665 778888998888753
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=1.3e-12 Score=124.74 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=83.0
Q ss_pred HHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCCCCcEEeccCccCccccchhhc
Q 043964 426 LFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKELPEGIG 505 (713)
Q Consensus 426 ~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 505 (713)
.+..+++|++|+|++|. +..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~------l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN------IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEE------ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHH
T ss_pred HHhcCCCCCEEECCCCC------Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-ccc
Confidence 47778888888888887 55677 78888888888888887 77888777777888888888887 67776 578
Q ss_pred cCCccceeeccCcccCCccc--ccCcCCCCCCcCCceecC
Q 043964 506 KLINMKHLLNERTDSLGRMP--AGIARLTSLRTFDEFHVS 543 (713)
Q Consensus 506 ~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~ 543 (713)
.+++|++|++++|. +..+| ..+..+++|++|++..+.
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 88888888888873 44444 367778888888877654
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=7.7e-10 Score=103.31 Aligned_cols=104 Identities=25% Similarity=0.425 Sum_probs=52.2
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcc-hhccCcCCccccCCcccccccCcc
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRN-IEKLIHLKYLNLSCLTSIRKLPEP 479 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~~i~~lp~~ 479 (713)
++|++|.+.+|.+. .+++..|..+++|++|++++|. +..+|.. +..+++|++|++++|. +..+|..
T Consensus 28 ~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 94 (177)
T 2o6r_A 28 SSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSQNQ------IQSLPDGVFDKLTKLTILYLHENK-LQSLPNG 94 (177)
T ss_dssp TTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCCcEEEeCCCccc------EeCHHHhcCcccccEEECCCCc------ceEeChhHccCCCccCEEECCCCC-ccccCHH
Confidence 45555555555422 1122224455555555555555 3344332 3555555555555555 4444432
Q ss_pred -ccCCCCCcEEeccCccCccccchh-hccCCccceeeccCc
Q 043964 480 -LCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERT 518 (713)
Q Consensus 480 -i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 518 (713)
+..+++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 95 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred HhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 3555555555555554 4445544 244555555555555
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=2.6e-09 Score=99.62 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=39.0
Q ss_pred eEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCc-cccCCCCCcEEeccCccCccccchh-hccCCccc
Q 043964 434 RVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPE-PLCELYNLEKLDISHCWYLKELPEG-IGKLINMK 511 (713)
Q Consensus 434 r~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~ 511 (713)
+.++++++. +..+|..+. .+|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|+
T Consensus 10 ~~l~~~~~~------l~~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 10 TEIRCNSKG------LTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLT 79 (177)
T ss_dssp TEEECCSSC------CSSCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CEEEecCCC------CccCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccC
Confidence 345555555 444443332 455666666555 444443 23555666666666554 4444443 35555566
Q ss_pred eeeccCc
Q 043964 512 HLLNERT 518 (713)
Q Consensus 512 ~L~l~~~ 518 (713)
+|++++|
T Consensus 80 ~L~l~~N 86 (177)
T 2o6r_A 80 ILYLHEN 86 (177)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6665555
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=3.9e-09 Score=109.26 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=70.6
Q ss_pred CCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCccceEeCccccCCcccccCcccc-eeecccccccccccccccc
Q 043964 565 LTNPRSLELILCENCNQLPP--LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLK-SLTISWMLELKEWNYGITR 641 (713)
Q Consensus 565 l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~-~L~l~~~~~l~~~~~~~~~ 641 (713)
+++|+.|+|.+| .+..+|. +..+++|+.|.|.+ +++.++...+. ++++|+ .+.+.+ +++.+...
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~-----~~~~L~~~l~l~~--~l~~I~~~--- 291 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFS-----NCGRLAGTLELPA--SVTAIEFG--- 291 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-----TCTTCCEEEEECT--TCCEECTT---
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc--ccceehHHHhh-----CChhccEEEEEcc--cceEEchh---
Confidence 788999999877 4666766 78889999999876 36676655433 677888 888865 45544432
Q ss_pred ccccccccccccccccccccccCCCCCC-CCCCCCCccEEE
Q 043964 642 TGNAFINIMPRLSSLTIDSCPKLKALPD-HFHQTTTLKELI 681 (713)
Q Consensus 642 ~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~ 681 (713)
....+++|+.|++.++ .++.++. .+.++++|+.|+
T Consensus 292 ----aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 ----AFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ----TTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred ----hhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 2347788999988765 6777765 467788888875
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=2.7e-09 Score=99.15 Aligned_cols=75 Identities=25% Similarity=0.339 Sum_probs=37.9
Q ss_pred eEEEeCCCCcccchhhcccCcchhccCcCCccccCCccccccc-CccccCCCCCcEEeccCccCccccchh-hccCCccc
Q 043964 434 RVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKL-PEPLCELYNLEKLDISHCWYLKELPEG-IGKLINMK 511 (713)
Q Consensus 434 r~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~ 511 (713)
+.++++++. +..+|..+. .+|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|.. +.++++|+
T Consensus 15 ~~l~~~~n~------l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 15 TLVNCQNIR------LASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SEEECCSSC------CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cEEEeCCCC------CCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhh
Confidence 345555555 444454443 455555555555 4444 3345555555555555554 4445444 24555555
Q ss_pred eeeccCc
Q 043964 512 HLLNERT 518 (713)
Q Consensus 512 ~L~l~~~ 518 (713)
+|++++|
T Consensus 85 ~L~L~~N 91 (174)
T 2r9u_A 85 QLDLNDN 91 (174)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 5555555
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.85 E-value=4.2e-09 Score=97.45 Aligned_cols=99 Identities=25% Similarity=0.315 Sum_probs=59.1
Q ss_pred eeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccccccc-CccccCCCCCcEEeccCccCccccchh-hccCCcc
Q 043964 433 LRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKL-PEPLCELYNLEKLDISHCWYLKELPEG-IGKLINM 510 (713)
Q Consensus 433 Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L 510 (713)
.++|+++++. +..+|..+. .+|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|.. +..+++|
T Consensus 11 ~~~l~~s~n~------l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSGKS------LASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQL 80 (170)
T ss_dssp TTEEECTTSC------CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCEEEeCCCC------cCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCC
Confidence 3566777666 556665553 567777777776 6555 4456677777777777776 5666654 3667777
Q ss_pred ceeeccCcccCCcccc-cCcCCCCCCcCCceec
Q 043964 511 KHLLNERTDSLGRMPA-GIARLTSLRTFDEFHV 542 (713)
Q Consensus 511 ~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~ 542 (713)
++|++++| .+..+|. .++.+++|+.|++.++
T Consensus 81 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 81 TQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 77777766 3333333 2444444444444443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.70 E-value=1e-08 Score=95.21 Aligned_cols=81 Identities=22% Similarity=0.398 Sum_probs=67.4
Q ss_pred CceeEEEeCCCCcccchhhccc-CcchhccCcCCccccCCcccccccCcc-ccCCCCCcEEeccCccCccccchh-hccC
Q 043964 431 TSLRVLNIGKWSISRWYFILEI-PRNIEKLIHLKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHCWYLKELPEG-IGKL 507 (713)
Q Consensus 431 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L 507 (713)
++|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|.. +.++++|++|+|++|. +..+|.. +..+
T Consensus 33 ~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 104 (174)
T 2r9u_A 33 TDKQRLWLNNNQ------ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNL 104 (174)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCcEEEeCCCC------ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhccc
Confidence 678899999988 5555 5678889999999999988 8888865 4789999999999987 7788876 8889
Q ss_pred CccceeeccCcc
Q 043964 508 INMKHLLNERTD 519 (713)
Q Consensus 508 ~~L~~L~l~~~~ 519 (713)
++|++|++++|.
T Consensus 105 ~~L~~L~L~~N~ 116 (174)
T 2r9u_A 105 KSLTHIYLYNNP 116 (174)
T ss_dssp TTCSEEECCSSC
T ss_pred cCCCEEEeCCCC
Confidence 999999998883
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=7.2e-08 Score=89.04 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=69.2
Q ss_pred cCCccccCCcccccccCccccCCCCCcEEeccCccCcccc-chhhccCCccceeeccCcccCCccccc-CcCCCCCCcCC
Q 043964 461 HLKYLNLSCLTSIRKLPEPLCELYNLEKLDISHCWYLKEL-PEGIGKLINMKHLLNERTDSLGRMPAG-IARLTSLRTFD 538 (713)
Q Consensus 461 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~ 538 (713)
..+.|+++++. +..+|..+. .+|++|+|++|. +..+ |..+..+++|++|++++|. +..+|.. +..+++|+.|+
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCC-cCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEE
Confidence 35788999988 889997764 889999999998 6666 5568899999999999984 4455543 45666666666
Q ss_pred ceecCCCCcccCCCCCCccCCc-cccCCCCCcEEEeccC
Q 043964 539 EFHVSRGKAVDGHKGCNNVFPN-WMMSLTNPRSLELILC 576 (713)
Q Consensus 539 ~~~~~~~~ei~~~~~~~~~~p~-~~~~l~~L~~L~L~~~ 576 (713)
+..+.... +|. .+..+++|+.|+|++|
T Consensus 85 L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 85 LNDNQLKS-----------IPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCSSCCCC-----------CCTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCE-----------eCHHHhcCCCCCCEEEeCCC
Confidence 65554321 222 3445555666665555
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=1.1e-06 Score=93.13 Aligned_cols=238 Identities=13% Similarity=0.145 Sum_probs=154.0
Q ss_pred ccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC-cchhccCcCCccccCCcccc
Q 043964 395 VSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-RNIEKLIHLKYLNLSCLTSI 473 (713)
Q Consensus 395 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i 473 (713)
..|.++ +|+.+.+..+- ..+....|.++ .|+.+.+.. . +..++ ..+.++.+|+.+++.++. +
T Consensus 130 ~aF~~~-~L~~i~l~~~i-------~~I~~~aF~~~-~L~~i~lp~-~------l~~I~~~aF~~c~~L~~l~l~~n~-l 192 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEGL-------KSIGDMAFFNS-TVQEIVFPS-T------LEQLKEDIFYYCYNLKKADLSKTK-I 192 (401)
T ss_dssp TTTTTC-CCSEEECCTTC-------CEECTTTTTTC-CCCEEECCT-T------CCEECSSTTTTCTTCCEEECTTSC-C
T ss_pred hhcccC-CccEEEeCCCc-------cEECHHhcCCC-CceEEEeCC-C------ccEehHHHhhCcccCCeeecCCCc-c
Confidence 344454 68888776552 12222336554 588888875 3 44554 467888889999998877 8
Q ss_pred cccCccccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccCCcccc-cCcCCCCCCcCCceecCCCCcccCC
Q 043964 474 RKLPEPLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSLGRMPA-GIARLTSLRTFDEFHVSRGKAVDGH 551 (713)
Q Consensus 474 ~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~ei~~~ 551 (713)
..+|...-...+|+.+.+..+ +..++.. +..+++|+.+.+..+ +..++. .+.. ++|+.+.+... ..
T Consensus 193 ~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~------ 260 (401)
T 4fdw_A 193 TKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT------ 260 (401)
T ss_dssp SEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC------
T ss_pred eEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc------
Confidence 888866555688888888754 6666654 678888998888764 344443 3444 67777766321 10
Q ss_pred CCCCccCCccccCCCCCcEEEeccCCCC----CCCCC--CCCCCCcceeeeccCccceEeCccccCCcccccCcccceee
Q 043964 552 KGCNNVFPNWMMSLTNPRSLELILCENC----NQLPP--LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLT 625 (713)
Q Consensus 552 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~----~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~ 625 (713)
..-+..+..+++|+.+.+.++... ..++. +..|++|+.+.|.+ +++.++...+. ++++|+.+.
T Consensus 261 ----~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-----~c~~L~~l~ 329 (401)
T 4fdw_A 261 ----NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG-----GNRKVTQLT 329 (401)
T ss_dssp ----EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-----TCCSCCEEE
T ss_pred ----EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc-----CCCCccEEE
Confidence 111344567899999999876322 23444 77889999999873 47777655433 568899988
Q ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCC-CCCCCC-CccEEEEE
Q 043964 626 ISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPD-HFHQTT-TLKELIIR 683 (713)
Q Consensus 626 l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~l~~l~-~L~~L~i~ 683 (713)
|.+ +++.+.... ...+ +|+.|.+.++ .+..++. .+..++ +++.|.+-
T Consensus 330 lp~--~l~~I~~~a-------F~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 330 IPA--NVTQINFSA-------FNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp ECT--TCCEECTTS-------SSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred ECc--cccEEcHHh-------CCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeC
Confidence 853 344443322 2356 8999999887 4444543 345564 78888887
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=1.9e-07 Score=96.39 Aligned_cols=100 Identities=8% Similarity=-0.002 Sum_probs=66.0
Q ss_pred CCCCCcCCceecCCCCcccCCCCCCccCCc-cccCCCCCcEEEeccCCCCCCCCC--CCCCCCcc-eeeeccCccceEeC
Q 043964 531 LTSLRTFDEFHVSRGKAVDGHKGCNNVFPN-WMMSLTNPRSLELILCENCNQLPP--LGILPSLE-KVIITYMISVKRVG 606 (713)
Q Consensus 531 l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~-~L~L~~~~~l~~~~ 606 (713)
+++|+.|++..+... .+|. .+..+++|+.|+|.++ +..++. +..+++|+ .+.+.+ .++.++
T Consensus 225 ~~~L~~l~L~~n~i~-----------~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-----------TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCC-----------EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCCCcc-----------eecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEc
Confidence 567777776654322 2443 3567889999999875 666665 78889998 999976 577776
Q ss_pred ccccCCcccccCcccceeeccccccccccccccccccccccccccccccccc
Q 043964 607 NEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTI 658 (713)
Q Consensus 607 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l 658 (713)
...+. ++++|+.|.+.+ .+++.+.... ...+++|+.|+.
T Consensus 290 ~~aF~-----~c~~L~~l~l~~-n~i~~I~~~a-------F~~~~~L~~ly~ 328 (329)
T 3sb4_A 290 FGAFM-----GCDNLRYVLATG-DKITTLGDEL-------FGNGVPSKLIYK 328 (329)
T ss_dssp TTTTT-----TCTTEEEEEECS-SCCCEECTTT-------TCTTCCCCEEEC
T ss_pred hhhhh-----CCccCCEEEeCC-CccCccchhh-------hcCCcchhhhcc
Confidence 54433 678899998853 2344444321 336778887753
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.46 E-value=2.6e-07 Score=96.29 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=61.1
Q ss_pred HccCCceeEEEeCC-CCcccchhhcccC-cchhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccchh
Q 043964 427 FEKLTSLRVLNIGK-WSISRWYFILEIP-RNIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPEG 503 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~-~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~ 503 (713)
+..+.+|+.|+|++ |. +..+| ..++.|.+|++|+|++|. +..+| ..+.+|++|+.|+|++|. +..+|..
T Consensus 27 l~~~~~L~~L~l~~~n~------l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH------LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp SCSCSCCSEEECCSCSS------CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred CCCCCCeeEEEccCCCC------CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 67777788888875 77 55665 467778888888888887 66655 456778888888888876 6777766
Q ss_pred hccCCccceeeccCcc
Q 043964 504 IGKLINMKHLLNERTD 519 (713)
Q Consensus 504 i~~L~~L~~L~l~~~~ 519 (713)
+....+|+.|++.+|.
T Consensus 99 ~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred HcccCCceEEEeeCCC
Confidence 5444448888887774
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=3.6e-08 Score=103.40 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=89.0
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHc-cCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccC-
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFE-KLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLP- 477 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp- 477 (713)
+++|++|++++|.+.... ...+...+. ..++|+.|+|++|.+++ .....-...+.+|++|+|++|. +...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK--CTVVAAVLGSGRHALDEVNLASCQLDP----AGLRTLLPVFLRARKLGLQLNS-LGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHH--HHHHHHHHSSCSSCEEEEECTTCCCCH----HHHHHTHHHHHTEEEEECCSSC-CCHHHH
T ss_pred HhhCCEEEecCCCCCHHH--HHHHHHHHhhCCCCceEEEecCCCCCH----HHHHHHHHHHHhccHhhcCCCC-CCHHHH
Confidence 356777777777542211 111222233 23578888888777431 1111222345567788888776 54322
Q ss_pred ----ccc-cCCCCCcEEeccCccCccc-----cchhhccCCccceeeccCcccCC----cccccCcCCCCCCcCCceecC
Q 043964 478 ----EPL-CELYNLEKLDISHCWYLKE-----LPEGIGKLINMKHLLNERTDSLG----RMPAGIARLTSLRTFDEFHVS 543 (713)
Q Consensus 478 ----~~i-~~L~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~----~~p~~i~~l~~L~~L~~~~~~ 543 (713)
..+ ...++|++|+|++|. +.. ++..+..+++|++|++++|.... .++..+...++|++|++..|.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 112 245678888888776 432 44555677778888888774221 123445556667777766655
Q ss_pred CCCcccCCCCCCccCCccccCCCCCcEEEeccCC
Q 043964 544 RGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCE 577 (713)
Q Consensus 544 ~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 577 (713)
.... ....++..+...++|+.|+|++|.
T Consensus 223 i~~~------g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 223 AGDT------AALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCHH------HHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCHH------HHHHHHHHHHhCCCCCEEeccCCC
Confidence 4310 001123334456777778877774
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.34 E-value=5.4e-06 Score=87.64 Aligned_cols=233 Identities=15% Similarity=0.209 Sum_probs=156.4
Q ss_pred CCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCc-chhccCcCCccccCCcccccccC-
Q 043964 400 VKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPR-NIEKLIHLKYLNLSCLTSIRKLP- 477 (713)
Q Consensus 400 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp- 477 (713)
+..+..+.+..+- ..+....|.++ +|+.+.+..+ +..++. .+.+ .+|+.+.+.. . ++.++
T Consensus 112 ~~~l~~i~ip~~i-------~~I~~~aF~~~-~L~~i~l~~~-------i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~ 173 (401)
T 4fdw_A 112 LKGYNEIILPNSV-------KSIPKDAFRNS-QIAKVVLNEG-------LKSIGDMAFFN-STVQEIVFPS-T-LEQLKE 173 (401)
T ss_dssp CSSCSEEECCTTC-------CEECTTTTTTC-CCSEEECCTT-------CCEECTTTTTT-CCCCEEECCT-T-CCEECS
T ss_pred cCCccEEEECCcc-------CEehHhhcccC-CccEEEeCCC-------ccEECHHhcCC-CCceEEEeCC-C-ccEehH
Confidence 4566666665542 22223346665 6999998754 334443 4555 4799999986 3 77777
Q ss_pred ccccCCCCCcEEeccCccCccccchhhccCCccceeeccCcccCCccc-ccCcCCCCCCcCCceecCCCCcccCCCCCCc
Q 043964 478 EPLCELYNLEKLDISHCWYLKELPEGIGKLINMKHLLNERTDSLGRMP-AGIARLTSLRTFDEFHVSRGKAVDGHKGCNN 556 (713)
Q Consensus 478 ~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~ 556 (713)
..+..+.+|+.+++.++. +..+|...-...+|+.+.+..+ +..++ ..+..+++|+.+.+...- .
T Consensus 174 ~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l------------~ 238 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENV------------S 238 (401)
T ss_dssp STTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTC------------C
T ss_pred HHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCc------------c
Confidence 468889999999999887 8889987666789999999754 45554 457788899988865421 1
Q ss_pred cCCc-cccCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCcc----ceEeCccccCCcccccCcccceeecccc
Q 043964 557 VFPN-WMMSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITYMIS----VKRVGNEFLGIEIIIAFPKLKSLTISWM 629 (713)
Q Consensus 557 ~~p~-~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~----l~~~~~~~~~~~~~~~f~~L~~L~l~~~ 629 (713)
.++. .+.. .+|+.+.|.+ .+..++. +..+++|+.+.+.+... +..++... ..++++|+.+.|.+
T Consensus 239 ~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a-----F~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC-----LEGCPKLARFEIPE- 309 (401)
T ss_dssp EECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT-----TTTCTTCCEECCCT-
T ss_pred Ccccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH-----hhCCccCCeEEeCC-
Confidence 1222 2223 7899999965 3555554 78899999999975321 11233322 33678899998863
Q ss_pred ccccccccccccccccccccccccccccccccccCCCCCC-CCCCCCCccEEEEEcC
Q 043964 630 LELKEWNYGITRTGNAFINIMPRLSSLTIDSCPKLKALPD-HFHQTTTLKELIIRSN 685 (713)
Q Consensus 630 ~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~i~~~ 685 (713)
+++.+.... ...+++|+.|.|.. .++.++. .+.+| +|+.|.+..+
T Consensus 310 -~i~~I~~~a-------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 310 -SIRILGQGL-------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp -TCCEECTTT-------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred -ceEEEhhhh-------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 355444332 33678999999965 4777754 46778 9999999833
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=1.2e-06 Score=91.03 Aligned_cols=101 Identities=14% Similarity=0.030 Sum_probs=82.2
Q ss_pred EEEeCCC-CcccchhhcccCcchhccCcCCccccCC-cccccccC-ccccCCCCCcEEeccCccCccccch-hhccCCcc
Q 043964 435 VLNIGKW-SISRWYFILEIPRNIEKLIHLKYLNLSC-LTSIRKLP-EPLCELYNLEKLDISHCWYLKELPE-GIGKLINM 510 (713)
Q Consensus 435 ~L~L~~~-~~~~~~~~~~lp~~i~~L~~Lr~L~L~~-~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L 510 (713)
.++++++ . +..+|. +..+.+|++|+|++ |. +..+| ..++.|.+|++|+|++|. +..+|+ .+.+|++|
T Consensus 12 ~v~~~~~n~------l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 12 GLRCTRDGA------LDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRL 82 (347)
T ss_dssp CEECCSSCC------CTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCC
T ss_pred EEEcCCCCC------CCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCC
Confidence 4588877 6 778999 99999999999996 77 88888 569999999999999998 766665 57999999
Q ss_pred ceeeccCcccCCcccccCcCCCCCCcCCceecCCC
Q 043964 511 KHLLNERTDSLGRMPAGIARLTSLRTFDEFHVSRG 545 (713)
Q Consensus 511 ~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 545 (713)
++|+|++| .+..+|..+....+|+.|++..+...
T Consensus 83 ~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 83 SRLNLSFN-ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CEEECCSS-CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CEEeCCCC-ccceeCHHHcccCCceEEEeeCCCcc
Confidence 99999999 55677765444444999988776643
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=1.3e-07 Score=98.31 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=39.2
Q ss_pred ccccCccccCCCCCcEEeccCccC---------ccccchhhccCCccceeeccCcccCCcccccCcCCCCCCcCCcee
Q 043964 473 IRKLPEPLCELYNLEKLDISHCWY---------LKELPEGIGKLINMKHLLNERTDSLGRMPAGIARLTSLRTFDEFH 541 (713)
Q Consensus 473 i~~lp~~i~~L~~L~~L~l~~~~~---------l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 541 (713)
+..+++++.++++|+.|.+.+... ...++..+..+++|+.|.+++|..+ .+|. + .+++|++|.+..
T Consensus 128 ~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~ 202 (362)
T 2ra8_A 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIIS 202 (362)
T ss_dssp HHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEEC
T ss_pred HHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEec
Confidence 445566677888999998865421 1134455567788888888776322 2222 2 255566665544
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=7.8e-07 Score=93.17 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=84.6
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcch-hccCcCCccccCCcccccc----
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNI-EKLIHLKYLNLSCLTSIRK---- 475 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i-~~L~~Lr~L~L~~~~~i~~---- 475 (713)
++|+.|++++|.+. ......+...+++|+.|+|++|.+++.. ...+...+ ....+|++|+|++|. +..
T Consensus 101 ~~L~~L~Ls~n~l~-----~~~~~~l~~~L~~L~~L~Ls~n~l~~~~-~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQLD-----PAGLRTLLPVFLRARKLGLQLNSLGPEA-CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVA 173 (372)
T ss_dssp SCEEEEECTTCCCC-----HHHHHHTHHHHHTEEEEECCSSCCCHHH-HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHH
T ss_pred CCceEEEecCCCCC-----HHHHHHHHHHHHhccHhhcCCCCCCHHH-HHHHHHHHHhcCCccceeeCCCCC-CChHHHH
Confidence 67888888887542 2223333445567888888888753210 11122222 234678888888887 543
Q ss_pred -cCccccCCCCCcEEeccCccCccc-----cchhhccCCccceeeccCcccCC----cccccCcCCCCCCcCCceecCCC
Q 043964 476 -LPEPLCELYNLEKLDISHCWYLKE-----LPEGIGKLINMKHLLNERTDSLG----RMPAGIARLTSLRTFDEFHVSRG 545 (713)
Q Consensus 476 -lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~----~~p~~i~~l~~L~~L~~~~~~~~ 545 (713)
++..+..+++|++|+|++|. +.. ++..+...++|++|++++|.... .++..+...++|++|++..|...
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 55555677888888888887 432 34556677788888888884322 23344555677888887776543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=4.8e-07 Score=94.03 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=20.8
Q ss_pred CCCCCcEEEeccCCCCCC-----CCC-CCCCCCcceeeeccC
Q 043964 564 SLTNPRSLELILCENCNQ-----LPP-LGILPSLEKVIITYM 599 (713)
Q Consensus 564 ~l~~L~~L~L~~~~~~~~-----l~~-l~~l~~L~~L~L~~~ 599 (713)
.+++|+.|+|+.|. +.. ++. +..+++|+.|+|++|
T Consensus 277 ~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 277 ILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred cCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 35677777776653 222 222 345677777777654
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=7.2e-06 Score=80.65 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=63.6
Q ss_pred HHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccccCccccCCC--CCcEEeccCccCccccc
Q 043964 424 KELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRKLPEPLCELY--NLEKLDISHCWYLKELP 501 (713)
Q Consensus 424 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp 501 (713)
......+++|+.|+|++|.+++ +..+|..+..+++|++|+|++|. +..+. .+..+. +|++|+|.+|.....+|
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~---l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYR---LDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCC---CGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred HHHHhhCCCCCEEECCCCCCCC---CccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 3334678999999999999654 55566778889999999999998 77763 355555 88999999888434444
Q ss_pred h-------hhccCCccceeec
Q 043964 502 E-------GIGKLINMKHLLN 515 (713)
Q Consensus 502 ~-------~i~~L~~L~~L~l 515 (713)
. .+..+++|+.|+-
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESS
T ss_pred cchhHHHHHHHHCcccCeECC
Confidence 2 3566777777763
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=1e-05 Score=75.61 Aligned_cols=119 Identities=15% Similarity=0.039 Sum_probs=79.6
Q ss_pred cccCCCceeEEEecCC-cCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCccccc
Q 043964 396 STCRVKRMRSLFIGGN-MLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIR 474 (713)
Q Consensus 396 ~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~ 474 (713)
.+...+.|++|.+++| .+.... ...+...+...+.|++|+|++|.+.+. ....+...+...++|++|+|++|. +.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~~L~~L~Ls~n~i~~~-g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNTYVKKFSIVGTRSNDP-VAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCCSCCEEECTTSCCCHH-HHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHhcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCCCcCEEECcCCCCChH-HHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 4456778888888887 543221 122445567778899999998885421 122344556666788899998887 65
Q ss_pred c-----cCccccCCCCCcEEec--cCccCccc-----cchhhccCCccceeeccCcc
Q 043964 475 K-----LPEPLCELYNLEKLDI--SHCWYLKE-----LPEGIGKLINMKHLLNERTD 519 (713)
Q Consensus 475 ~-----lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 519 (713)
. +...+...++|++|+| ++|. +.. +...+...++|++|++++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4 5566777788888888 6676 432 44455666788888888773
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=0.00037 Score=73.54 Aligned_cols=126 Identities=16% Similarity=0.194 Sum_probs=66.9
Q ss_pred CccccCCCceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccC-cchhccCcCCccccCCccc
Q 043964 394 PVSTCRVKRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIP-RNIEKLIHLKYLNLSCLTS 472 (713)
Q Consensus 394 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~ 472 (713)
..+|.+|.+|+++.+..+- ..+....|.++.+|+.+++..+ +..++ ..+..+..|+.+.+..+
T Consensus 64 ~~AF~~c~~L~~i~lp~~i-------~~I~~~aF~~c~~L~~i~lp~~-------l~~I~~~aF~~c~~L~~i~~p~~-- 127 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPSTV-------REIGEFAFENCSKLEIINIPDS-------VKMIGRCTFSGCYALKSILLPLM-- 127 (394)
T ss_dssp TTTTTTCTTEEEEECCTTC-------CEECTTTTTTCTTCCEECCCTT-------CCEECTTTTTTCTTCCCCCCCTT--
T ss_pred HHHhhCCCCceEEEeCCCc-------cCcchhHhhCCCCCcEEEeCCC-------ceEccchhhcccccchhhcccCc--
Confidence 3567788889998886542 1222344888888999888643 22332 24555555655554322
Q ss_pred ccccC-----------------------ccccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcccCCccc-cc
Q 043964 473 IRKLP-----------------------EPLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTDSLGRMP-AG 527 (713)
Q Consensus 473 i~~lp-----------------------~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p-~~ 527 (713)
+..++ ..+..+.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ +..++ ..
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~ 203 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYC 203 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTT
T ss_pred eeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchh
Confidence 11111 22445566666666543 2334432 455666666666543 22222 23
Q ss_pred CcCCCCCCcCCc
Q 043964 528 IARLTSLRTFDE 539 (713)
Q Consensus 528 i~~l~~L~~L~~ 539 (713)
+.....|+.+.+
T Consensus 204 F~~~~~L~~i~~ 215 (394)
T 4fs7_A 204 FAECILLENMEF 215 (394)
T ss_dssp TTTCTTCCBCCC
T ss_pred hccccccceeec
Confidence 445555555543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=1.4e-05 Score=72.74 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=17.9
Q ss_pred CceeEEEecCCcCCCcchhhhHHHHHHccCCceeEEEeCCCC
Q 043964 401 KRMRSLFIGGNMLDNSSLNGKMLKELFEKLTSLRVLNIGKWS 442 (713)
Q Consensus 401 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~ 442 (713)
.+|+.|+++++.+.. ..+.. +.++++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd-----~GL~~-L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS-----IGFDH-MEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCG-----GGGGG-GTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccH-----HHHHH-hcCCCCCCEEEeCCCC
Confidence 356666666654221 11111 3456666666666654
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=9.3e-06 Score=73.97 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=42.3
Q ss_pred cCcccceeecccccccccccccccccccccc-ccccccccccccccccCCC--CCCCCCCCCCccEEEEEcCCchhhH
Q 043964 617 AFPKLKSLTISWMLELKEWNYGITRTGNAFI-NIMPRLSSLTIDSCPKLKA--LPDHFHQTTTLKELIIRSNCGLLEE 691 (713)
Q Consensus 617 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~~p~L~~L~l~~c~~L~~--lp~~l~~l~~L~~L~i~~~C~~l~~ 691 (713)
++++|+.|+|++|..+++.....-. .. ...++|++|+|++|+.++. +. .+.++++|+.|+|+ +|+.+.+
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~----~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~-~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLS----QLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLS-DLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHH----TCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEE-SCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHH----hcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECC-CCCCCCc
Confidence 5666666666666655543322110 00 0135788888888877763 21 24567888889998 8887765
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.67 E-value=0.00016 Score=76.39 Aligned_cols=213 Identities=15% Similarity=0.123 Sum_probs=100.4
Q ss_pred HccCCceeEEEeCCCCcccchhhcccC-cchhccCcCCccccCCcccccccC-ccccCCCCCcEEeccCccCccccchhh
Q 043964 427 FEKLTSLRVLNIGKWSISRWYFILEIP-RNIEKLIHLKYLNLSCLTSIRKLP-EPLCELYNLEKLDISHCWYLKELPEGI 504 (713)
Q Consensus 427 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i 504 (713)
|..+++|+.+.+.++. ..++ ..+.++.+|+.+.+..+ ++.++ ..+.+...|+.+.+..+. ..+....
T Consensus 158 F~~c~~L~~i~l~~~~-------~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~ 226 (394)
T 4fs7_A 158 FATCESLEYVSLPDSM-------ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL--YYLGDFA 226 (394)
T ss_dssp TTTCTTCCEEECCTTC-------CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC--CEECTTT
T ss_pred hcccCCCcEEecCCcc-------ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc--eEeehhh
Confidence 5566666666665432 1222 34555566666666543 34443 234555566655554432 2233333
Q ss_pred ccCCccceeeccCcccCCccc-ccCcCCCCCCcCCceecCCCCcccCCCCCCccCCccccCCCCCcEEEeccCCCCCCCC
Q 043964 505 GKLINMKHLLNERTDSLGRMP-AGIARLTSLRTFDEFHVSRGKAVDGHKGCNNVFPNWMMSLTNPRSLELILCENCNQLP 583 (713)
Q Consensus 505 ~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~ei~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 583 (713)
....+|+.+.+... ...+. ..+....+|+.+.+..... ..-...+..+..|+.+.+... .++
T Consensus 227 ~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~-----------~i~~~~F~~~~~l~~~~~~~~----~i~ 289 (394)
T 4fs7_A 227 LSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL-----------RIGGSLFYNCSGLKKVIYGSV----IVP 289 (394)
T ss_dssp TTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC-----------EECSCTTTTCTTCCEEEECSS----EEC
T ss_pred cccCCCceEEECCC--ceecccccccccccceeEEcCCCcc-----------eeeccccccccccceeccCce----eec
Confidence 33445555555432 11121 2233444444443322110 001112234555555554432 122
Q ss_pred C--CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccccccccccccccccccccccccccccccccccc
Q 043964 584 P--LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITRTGNAFINIMPRLSSLTIDSC 661 (713)
Q Consensus 584 ~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 661 (713)
. +..+.+|+.+.+.+ +++.++...+. .+.+|+.+.|.+ +++.+... ....+.+|+.+.+..
T Consensus 290 ~~~F~~~~~L~~i~l~~--~i~~I~~~aF~-----~c~~L~~i~lp~--~v~~I~~~-------aF~~c~~L~~i~lp~- 352 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLD--SVKFIGEEAFE-----SCTSLVSIDLPY--LVEEIGKR-------SFRGCTSLSNINFPL- 352 (394)
T ss_dssp TTTTTTCTTCCEEEECT--TCCEECTTTTT-----TCTTCCEECCCT--TCCEECTT-------TTTTCTTCCEECCCT-
T ss_pred ccccccccccccccccc--ccceechhhhc-----CCCCCCEEEeCC--cccEEhHH-------hccCCCCCCEEEECc-
Confidence 2 44566677666642 35555443222 456677666642 23333221 122556777777754
Q ss_pred ccCCCCCC-CCCCCCCccEEEEEcC
Q 043964 662 PKLKALPD-HFHQTTTLKELIIRSN 685 (713)
Q Consensus 662 ~~L~~lp~-~l~~l~~L~~L~i~~~ 685 (713)
.++.++. .+..|++|+.+++..+
T Consensus 353 -~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 353 -SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred -cccEehHHHhhCCCCCCEEEECCC
Confidence 2555544 3566778888877633
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=1.9e-05 Score=73.65 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=69.4
Q ss_pred hhHHHHHHccCCceeEEEeCCC-CcccchhhcccCcchhccCcCCccccCCcccccc-----cCccccCCCCCcEEeccC
Q 043964 420 GKMLKELFEKLTSLRVLNIGKW-SISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK-----LPEPLCELYNLEKLDISH 493 (713)
Q Consensus 420 ~~~~~~~~~~~~~Lr~L~L~~~-~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~ 493 (713)
.+.+...+...+.|+.|+|++| .+.+ .....+...+....+|++|+|++|. +.. +...+...++|++|+|++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC
Confidence 3445667888999999999999 7532 1123455566777889999999998 653 445566678899999998
Q ss_pred ccCccc-----cchhhccCCccceeec--cCc
Q 043964 494 CWYLKE-----LPEGIGKLINMKHLLN--ERT 518 (713)
Q Consensus 494 ~~~l~~-----lp~~i~~L~~L~~L~l--~~~ 518 (713)
|. +.. +...+...++|++|++ ++|
T Consensus 103 N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 103 NF-ISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp SC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred Cc-CCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 87 443 4556677778888888 656
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.46 E-value=2.2e-05 Score=77.24 Aligned_cols=82 Identities=23% Similarity=0.217 Sum_probs=61.5
Q ss_pred hccCcCCccccCCccccccc---CccccCCCCCcEEeccCccCccccchhhccCC--ccceeeccCcccCCccc------
Q 043964 457 EKLIHLKYLNLSCLTSIRKL---PEPLCELYNLEKLDISHCWYLKELPEGIGKLI--NMKHLLNERTDSLGRMP------ 525 (713)
Q Consensus 457 ~~L~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~~p------ 525 (713)
.++++|+.|+|++|. +..+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|++.+|.....+|
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 568899999999998 6654 4566789999999999998 6666 3356665 89999999997555444
Q ss_pred -ccCcCCCCCCcCCcee
Q 043964 526 -AGIARLTSLRTFDEFH 541 (713)
Q Consensus 526 -~~i~~l~~L~~L~~~~ 541 (713)
..+..+++|+.|+...
T Consensus 244 ~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHHHCTTCCEESSCB
T ss_pred HHHHHHCcccCeECCcC
Confidence 2356777888777543
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.39 E-value=6.7e-05 Score=79.81 Aligned_cols=52 Identities=31% Similarity=0.260 Sum_probs=38.1
Q ss_pred CCcEEeccchHHHHHHHH-hCCCCc--cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKL-LCESSE--QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L-~~~~~~--~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+..++||+.+.+++.++| .....+ .....-+|+|+|++|+||||||+.+++.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 356999999999999988 421100 0123445555999999999999999985
No 163
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.25 E-value=0.00017 Score=75.81 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=42.8
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhC
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKF 226 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F 226 (713)
+..++||+.+.+++.+++..... ......+.|+|++|+||||||+.+.+. ....|
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~ 73 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKF 73 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHh
Confidence 36799999999999998874211 124568899999999999999999984 44444
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.15 E-value=0.0039 Score=65.63 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeecccccccccccccccc
Q 043964 564 SLTNPRSLELILCENCNQLPP--LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGITR 641 (713)
Q Consensus 564 ~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~ 641 (713)
.+.+|+.+.+.+. ...+.. +..+++|+.+.+. ..++.++...+ .++.+|+.+.|.+ +++.+...
T Consensus 263 ~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF-----~~c~~L~~i~lp~--~v~~I~~~--- 328 (394)
T 4gt6_A 263 SCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPESVF-----AGCISLKSIDIPE--GITQILDD--- 328 (394)
T ss_dssp TCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTTTT-----TTCTTCCEEECCT--TCCEECTT---
T ss_pred ecccccEEecccc--cceecCcccccccccccccCC--CcccccCceee-----cCCCCcCEEEeCC--cccEehHh---
Confidence 4566777776543 222322 5667788887775 34555554433 2567888888743 34433322
Q ss_pred ccccccccccccccccccccccCCCCCC-CCCCCCCccEEEEE
Q 043964 642 TGNAFINIMPRLSSLTIDSCPKLKALPD-HFHQTTTLKELIIR 683 (713)
Q Consensus 642 ~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~i~ 683 (713)
....+.+|+++.|.. .++.++. .+.+|++|+.+++.
T Consensus 329 ----aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 329 ----AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp ----TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred ----HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 133677888888864 4677764 45789999999998
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.15 E-value=0.00024 Score=66.27 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=37.8
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++|+++..+++.+++... ....+-|+|.+|+||||+|+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998752 2345679999999999999999884
No 166
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.10 E-value=0.00022 Score=74.98 Aligned_cols=49 Identities=18% Similarity=0.092 Sum_probs=39.8
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++||+++++++.+++..-.. ....+.+-|+|++|+||||||+.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999988764211 123568999999999999999999985
No 167
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.03 E-value=0.00027 Score=73.09 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=38.3
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...++||+.+.+++.+++.. + +++.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHH
Confidence 45699999999999998863 2 58999999999999999999874
No 168
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.03 E-value=0.00038 Score=72.19 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=41.5
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEec
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVS 235 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 235 (713)
...++||+++.+.+.+ +. . +++.|+|++|+|||||++.+.+. ... ..+|+.+.
T Consensus 12 ~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~ 64 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLR 64 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGG
T ss_pred HHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEch
Confidence 4568999999999988 64 2 59999999999999999999874 221 25676554
No 169
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.99 E-value=0.00033 Score=64.90 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=37.5
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++.+.+.+.+.+... ....+-|+|.+|+||||+|+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998752 2345579999999999999999874
No 170
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.96 E-value=0.0006 Score=65.16 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=37.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++..++++.+++.... ...+-|+|.+|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997532 223889999999999999999873
No 171
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.84 E-value=0.00053 Score=72.00 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=40.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++||+.+++++.+++...-. ......+.|+|++|+||||+|+.+.+.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999998854311 124568889999999999999999985
No 172
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.84 E-value=0.00051 Score=66.74 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=38.8
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++..++.+.+++..+. ...++-|+|.+|+||||+|+.+++.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987532 2358889999999999999999874
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.80 E-value=0.00076 Score=70.87 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=39.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++||+.+.+++.+++.....+.....+.+.|+|.+|+||||||+.+.+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999887521100113348999999999999999999874
No 174
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.55 E-value=0.01 Score=62.40 Aligned_cols=100 Identities=12% Similarity=0.181 Sum_probs=60.7
Q ss_pred cCCCCCcEEEeccCCCCCCCCC--CCCCCCcceeeeccCccceEeCccccCCcccccCcccceeeccccccccccccccc
Q 043964 563 MSLTNPRSLELILCENCNQLPP--LGILPSLEKVIITYMISVKRVGNEFLGIEIIIAFPKLKSLTISWMLELKEWNYGIT 640 (713)
Q Consensus 563 ~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~ 640 (713)
..+++|+.+.+.. .+..++. +..+.+|+.+.|.. +++.++...+. ++.+|+.+.|-+ +++.+...
T Consensus 285 ~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-----~C~~L~~i~ip~--sv~~I~~~-- 351 (394)
T 4gt6_A 285 MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFA-----GCEQLERIAIPS--SVTKIPES-- 351 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-----TCTTCCEEEECT--TCCBCCGG--
T ss_pred ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhh-----CCCCCCEEEECc--ccCEEhHh--
Confidence 3678899998864 4555655 77889999999963 46777654432 677899888842 34433322
Q ss_pred cccccccccccccccccccccccCCCCCCCCCCCCCccEEEEE
Q 043964 641 RTGNAFINIMPRLSSLTIDSCPKLKALPDHFHQTTTLKELIIR 683 (713)
Q Consensus 641 ~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~i~ 683 (713)
....+++|+.+.+.+.... . ..+..+.+|+.+.+.
T Consensus 352 -----aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 352 -----AFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVA 386 (394)
T ss_dssp -----GGTTCTTCCEEEESSCHHH--H-HTCBCCCCC------
T ss_pred -----HhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeC
Confidence 2336788888888764221 1 234556778877775
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.25 E-value=0.0017 Score=57.45 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=34.1
Q ss_pred cEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 170 EIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+++|+...+.++.+.+..-.. .+. -|-|+|..|.|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~~-~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TDI-AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CCS-CEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCC-CEEEECCCCCCHHHHHHHHHHh
Confidence 478999889988888754221 122 3569999999999999999874
No 176
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.18 E-value=0.073 Score=55.34 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=21.1
Q ss_pred cccccccccccccccCCCCCC-CCCCCCCccEEEEE
Q 043964 649 IMPRLSSLTIDSCPKLKALPD-HFHQTTTLKELIIR 683 (713)
Q Consensus 649 ~~p~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~i~ 683 (713)
.+.+|+.+.|.. .++.++. .+.+|++|+.+.+.
T Consensus 308 ~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 308 DCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 556777777753 3555544 35667777777765
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.18 E-value=0.0042 Score=58.41 Aligned_cols=54 Identities=20% Similarity=0.086 Sum_probs=34.4
Q ss_pred hHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
..+.+.+++..... ......+-|+|.+|+||||||+++++. .......++++++
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 34455555553321 112267889999999999999999984 4344445555543
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.07 E-value=0.0026 Score=64.74 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=37.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++..++.+.+++..+ ....+-++|++|+||||+|+.+.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999998753 2223889999999999999999884
No 179
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.01 E-value=0.002 Score=56.90 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=33.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+...++++.+.+..-.. ... -|-|+|..|.|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~---~~~-~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK---RTS-PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT---CSS-CEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC---CCC-cEEEECCCCccHHHHHHHHHHh
Confidence 3588998888888887754221 122 3569999999999999999984
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.00 E-value=0.0038 Score=63.65 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=37.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++..++.+.+++..+ ....+-++|++|+||||+|+.+++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999988743 2334889999999999999999884
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.92 E-value=0.0036 Score=62.54 Aligned_cols=52 Identities=23% Similarity=0.149 Sum_probs=38.0
Q ss_pred CCcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.++.++++.+.+...... +-....-+-|+|.+|+||||||+++.+.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999998887431000 0013456889999999999999999873
No 182
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.90 E-value=0.0069 Score=56.89 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 174 RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 174 ~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
|+..++++.+.+.... .....+|+|.|..|.||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445677777776532 22467999999999999999999876
No 183
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0017 Score=65.38 Aligned_cols=48 Identities=8% Similarity=0.013 Sum_probs=39.4
Q ss_pred cEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 170 EIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+.||+++.++|...|...-. ++....+-|+|++|.|||++|+.|.++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 388999999999988765322 235667899999999999999999985
No 184
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.85 E-value=0.0041 Score=57.25 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=22.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-..+.|+|..|.||||||+.+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999984
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.80 E-value=0.011 Score=57.03 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=28.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSE 236 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~ 236 (713)
...+-|+|.+|+||||+|+.+.+. .........|+..++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHH
Confidence 457889999999999999999984 333334556666543
No 186
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.75 E-value=0.0052 Score=66.10 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=36.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+.++|++.+++.+++.|.... ..-+-++|.+|+||||+|+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH
Confidence 459999999999999997532 22346899999999999999988
No 187
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.66 E-value=0.0052 Score=60.38 Aligned_cols=52 Identities=21% Similarity=0.096 Sum_probs=35.1
Q ss_pred CCcEEeccchHHHHHHHHhC---CCCc---cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLC---ESSE---QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~---~~~~---~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.+..++++.+++.. ...- +....+-|-++|.+|+||||+|+++.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35689998877777665432 1100 0023345779999999999999999883
No 188
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.61 E-value=0.0066 Score=62.63 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=37.9
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+++.++.+..++..+. ...+-++|..|+||||+|+.+.+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999987532 223789999999999999999885
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.56 E-value=0.0084 Score=60.58 Aligned_cols=50 Identities=22% Similarity=0.152 Sum_probs=34.8
Q ss_pred cEEeccchHHHHHHHHhCCC---------CccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 170 EIYGRVGEKNELLSKLLCES---------SEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+++|.+..++.+.+++.... -........+-|+|.+|+||||+|+.+.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 47888887777776654210 000123456889999999999999998884
No 190
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.47 E-value=0.0062 Score=55.58 Aligned_cols=20 Identities=45% Similarity=0.680 Sum_probs=18.8
Q ss_pred EEEEEEecCCchhHHHHHHH
Q 043964 197 HIISIVGMGGIGKTTLAQLD 216 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v 216 (713)
.+|.|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999998
No 191
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.41 E-value=0.011 Score=55.81 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++|.+.+... ...-.+|+|+|..|.|||||++.+..-
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555432 124679999999999999999998873
No 192
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.38 E-value=0.0083 Score=62.41 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=38.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++..++.+.+++..+. ..+.+-|+|..|+||||+|+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999987532 2357789999999999999998763
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.36 E-value=0.0086 Score=60.28 Aligned_cols=52 Identities=27% Similarity=0.176 Sum_probs=37.6
Q ss_pred CCcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.+..++++.+++...-.. .-...+.|.++|.+|.||||||+++.+.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 346899998888888776531000 0123457899999999999999999983
No 194
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.35 E-value=0.011 Score=59.79 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=32.7
Q ss_pred EeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 172 YGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 172 vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
|+.+.-.+++++.+...-. .+....|.|+|+.|.||||+++.+...
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3344556667776643322 235677999999999999999999873
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.33 E-value=0.0079 Score=60.43 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=37.4
Q ss_pred CcEEeccchHHHHHHHHhCCCC------ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.+..++.+.+++..... .-....+.|-|+|.+|+||||+|+.+.+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5689999999998887743100 00112457889999999999999999873
No 196
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.29 E-value=0.0058 Score=62.72 Aligned_cols=50 Identities=26% Similarity=0.285 Sum_probs=38.1
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|++..++++..++...... ......|-|+|.+|+||||+|+.+.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 356999999999988888642100 11344678999999999999999976
No 197
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.29 E-value=0.013 Score=60.75 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=35.1
Q ss_pred CcEEeccchHHH---HHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++++|++..++. +.+.+..+.. ..+.+-|+|.+|+||||+|+.+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 469999987665 4555553321 2357889999999999999999883
No 198
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.28 E-value=0.0043 Score=63.24 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=37.4
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++..+.++.+++...... ......+-|+|.+|+||||+|+.+.+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 56899999888888877531100 112356789999999999999999873
No 199
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.23 E-value=0.0095 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+|+|+|+.|.|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 200
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.19 E-value=0.0078 Score=61.03 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=36.3
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|++..++.+.+++..+ ....+-++|.+|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHH
Confidence 45899999888888887642 2333889999999999999999874
No 201
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.19 E-value=0.0098 Score=64.84 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCcEEeccchHHHHHHHHhCCCC-----------ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESS-----------EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|++..++++.+++..... ++....+.+-|+|++|+||||+|+.+.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35699999999999999975110 00113468899999999999999999874
No 202
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.16 E-value=0.23 Score=51.50 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=10.2
Q ss_pred ccccCCCceeEEEecCC
Q 043964 395 VSTCRVKRMRSLFIGGN 411 (713)
Q Consensus 395 ~~~~~~~~Lr~L~l~~~ 411 (713)
.+|.+|.+|+++.+..+
T Consensus 63 ~aF~~C~~L~~I~lp~~ 79 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAST 79 (379)
T ss_dssp TTTTTCTTCCEEEECTT
T ss_pred HHhhCCCCCCEEEeCCc
Confidence 35566666666666543
No 203
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.03 E-value=0.01 Score=61.36 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=37.5
Q ss_pred CcEEeccchHHHHHHHHhCC---CC---ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCE---SS---EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.+..++++.+.+... .. ......+-|-|+|..|+||||||+++.+.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999888877421 00 00123557889999999999999999873
No 204
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.00 E-value=0.014 Score=59.41 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=38.1
Q ss_pred CCcEEeccchHHHHHHHHhCC---C---CccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCE---S---SEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.+..++++.+++... + .......+-|-++|.+|.|||+||+++.+.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999998877310 0 000123456889999999999999999873
No 205
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.91 E-value=0.01 Score=63.07 Aligned_cols=45 Identities=27% Similarity=0.277 Sum_probs=35.1
Q ss_pred CcEEeccchH---HHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEK---NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.+..+ ..+...+.. ..+..+-+||.+|+||||+|+.+.+.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4588887666 566666663 24567889999999999999999873
No 206
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.91 E-value=0.01 Score=53.88 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 207
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.0091 Score=61.65 Aligned_cols=45 Identities=20% Similarity=0.037 Sum_probs=34.0
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+...+.+.+++.... .... +.|+|..|+||||+|+.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHH
Confidence 468898888877777762211 1233 89999999999999998876
No 208
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.90 E-value=0.011 Score=54.39 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 209
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.87 E-value=0.011 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 210
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.83 E-value=0.0072 Score=61.85 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=34.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.+..++.+-..+..... .+.....+.++|..|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3577877666666555542200 0123467899999999999999999883
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.80 E-value=0.012 Score=57.92 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=32.8
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++|....+.++.+.+..-.. .-.-|-|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4588999888888877654221 1234569999999999999999873
No 212
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.79 E-value=0.013 Score=53.58 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 213
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.77 E-value=0.012 Score=53.77 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|-|.|+.|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 214
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.76 E-value=0.011 Score=53.85 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 215
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.76 E-value=0.025 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhch
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998774
No 216
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.74 E-value=0.015 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+++|+|..|.|||||++..+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346999999999999999998664
No 217
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.73 E-value=0.024 Score=56.02 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=33.3
Q ss_pred cEEeccchHHHHHH-------HHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 170 EIYGRVGEKNELLS-------KLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 170 ~~vG~~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++|.....++++. .+.... .....-+-|+|.+|+||||+|+++.+.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46777666666655 333211 224677889999999999999999884
No 218
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.73 E-value=0.02 Score=57.71 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=28.6
Q ss_pred hHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
....+...+..... .....+|||.|..|+||||+|+.+..
T Consensus 75 ~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 75 TLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444444444332 34678999999999999999999865
No 219
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.71 E-value=0.019 Score=58.30 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=37.3
Q ss_pred CCcEEeccchHHHHHHHHhCC---CC---ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCE---SS---EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.++.++.+.+.+... +. ......+-|-++|++|.||||||+++.+.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 357899998888888766321 00 00123467889999999999999999883
No 220
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.68 E-value=0.012 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-..++|+|..|.|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999984
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.66 E-value=0.013 Score=57.33 Aligned_cols=52 Identities=25% Similarity=0.144 Sum_probs=34.1
Q ss_pred CCcEEeccchHHHHHHHH---hCCCCc---cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKL---LCESSE---QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.+..++++.+.+ .....- .....+-|.|+|..|.||||+|+.+.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 356899887777666543 221100 0011234789999999999999999873
No 222
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.64 E-value=0.017 Score=54.05 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.+|.|+|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.64 E-value=0.017 Score=66.32 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=37.1
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++|++.+++++++.|.... ..-+-++|.+|+||||+|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997533 223569999999999999998773
No 224
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.64 E-value=0.016 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+|+|+|+.|.||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 225
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.63 E-value=0.016 Score=58.43 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.3
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++.+||+|.|-|||||||.|-.+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999999877655
No 226
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.62 E-value=0.016 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999864
No 227
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.62 E-value=0.016 Score=56.53 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998765
No 228
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.60 E-value=0.02 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.+|.|+|+.|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 229
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.60 E-value=0.014 Score=67.97 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=37.5
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++||++++..+++.|.... ..-+-++|.+|+||||+|+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999997532 234578999999999999999884
No 230
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.54 E-value=0.02 Score=53.89 Aligned_cols=24 Identities=42% Similarity=0.400 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|+|+.|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 231
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.53 E-value=0.019 Score=53.68 Aligned_cols=25 Identities=44% Similarity=0.413 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
....+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999876
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.50 E-value=0.022 Score=57.49 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=37.1
Q ss_pred cEEeccchHHHHHHHHhCCC---CccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 170 EIYGRVGEKNELLSKLLCES---SEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++|.+..++.+...+.... .........+.++|..|+||||+|+.+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 47788888888887776431 111223468999999999999999999883
No 233
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.45 E-value=0.02 Score=54.06 Aligned_cols=24 Identities=42% Similarity=0.394 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999876
No 234
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.43 E-value=0.019 Score=58.95 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=35.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.+..++.+...+..+ .+..+.++|..|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 45788888788888777643 2323899999999999999998873
No 235
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.43 E-value=0.018 Score=54.11 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|+|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 236
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.42 E-value=0.017 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 237
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.40 E-value=0.019 Score=53.97 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998765
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.40 E-value=0.019 Score=52.64 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 239
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.40 E-value=0.017 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|+|+|+.|.||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 240
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.39 E-value=0.028 Score=54.84 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=30.1
Q ss_pred chHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 176 GEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+++++.+..+... .....+|.|+|++|.||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445565555544321 34568999999999999999999865
No 241
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.37 E-value=0.02 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999887
No 242
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.32 E-value=0.019 Score=57.93 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=36.2
Q ss_pred CcEEeccchHHHHHHHHhCC----C-C---ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCE----S-S---EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~----~-~---~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++|.+..++.+...+... . . .......-+-++|.+|+||||+|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999988888877541 0 0 00012345679999999999999999873
No 243
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.31 E-value=0.014 Score=57.55 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=34.8
Q ss_pred CCcEEeccchHHHHHHHHhCCCCc------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.+..++++.+.+..-... .....+-+-++|.+|+||||+|+++.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 356899988888877765410000 0011223679999999999999999883
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.31 E-value=0.015 Score=53.81 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999886
No 245
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.28 E-value=0.022 Score=57.94 Aligned_cols=47 Identities=28% Similarity=0.164 Sum_probs=38.4
Q ss_pred CCcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-++++|.+..++.+.+++..+. ...++-+.|..|+||||+|+.+.+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3568999999999999988432 3467888899999999999999773
No 246
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.27 E-value=0.016 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 247
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.26 E-value=0.019 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 248
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.24 E-value=0.022 Score=53.62 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 249
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.23 E-value=0.02 Score=53.72 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 250
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.23 E-value=0.041 Score=54.75 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=28.7
Q ss_pred hHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++++..+...... .....+|-|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~-~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKA-VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCC-CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccC-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555543221 33467899999999999999999865
No 251
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.22 E-value=0.02 Score=54.72 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|+|+|+.|.||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999865
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.22 E-value=0.025 Score=65.01 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=37.4
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.++||+.+++++++.|.... ..-+-++|.+|+||||+|+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999997532 234569999999999999999873
No 253
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.20 E-value=0.025 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 254
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.18 E-value=0.02 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+|+|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998873
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.15 E-value=0.021 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 256
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.08 E-value=0.027 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998875
No 257
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.07 E-value=0.027 Score=58.02 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=37.3
Q ss_pred CCcEEeccchHHHHHHHHhCC---CC---ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCE---SS---EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.+..++.+.+.+... +. ......+-|-++|.+|+||||||+++.+.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999998877321 00 00112345789999999999999999984
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.06 E-value=0.018 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999876
No 259
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.06 E-value=0.022 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999877
No 260
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.05 E-value=0.018 Score=52.88 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|+|+.|+||||+|+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999875
No 261
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.03 E-value=0.021 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 262
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.98 E-value=0.028 Score=56.62 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|||+|..|.|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999887
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.98 E-value=0.019 Score=53.97 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|+|+.|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 264
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.93 E-value=0.028 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|+|.|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998765
No 265
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.90 E-value=0.027 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998865
No 266
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.89 E-value=0.027 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 267
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.88 E-value=0.027 Score=54.97 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999876
No 268
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.87 E-value=0.025 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|+|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998765
No 269
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.87 E-value=0.022 Score=57.29 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=35.2
Q ss_pred cEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 170 EIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+++|....+.++.+.+..-.. ... -|-|+|..|+|||++|+.+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~---~~~-~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP---SDA-TVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS---TTS-CEEEESCTTSCHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhC---CCC-cEEEECCCCchHHHHHHHHHH
Confidence 578998888888888765321 122 456999999999999999987
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.86 E-value=0.026 Score=54.77 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999885
No 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.85 E-value=0.049 Score=55.14 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+|+|+|..|+||||+++.+..-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998873
No 272
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.84 E-value=0.031 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+++++|..|.|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999887
No 273
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.83 E-value=0.023 Score=51.86 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|.|+|+.|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 274
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.82 E-value=0.03 Score=57.93 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=35.2
Q ss_pred cEEeccchHHHHHHHHhC-------CC--CccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 170 EIYGRVGEKNELLSKLLC-------ES--SEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~-------~~--~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++|.+..++.+...+.. .. .........|-++|.+|+||||+|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 378888888888887720 00 000113456889999999999999999873
No 275
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.80 E-value=0.02 Score=52.70 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 276
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.79 E-value=0.03 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+|.+.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 277
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.78 E-value=0.028 Score=52.93 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 278
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.74 E-value=0.037 Score=58.91 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCcEEeccchHHHHHHHHhCC----C--CccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCE----S--SEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.+..++.+.+.+... . .......+-|-++|++|+||||||+++.+.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999888888876311 0 000123467889999999999999999883
No 279
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.73 E-value=0.028 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+|+|+|+.|.||||+++.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999874
No 280
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.69 E-value=0.041 Score=57.56 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=37.3
Q ss_pred CCcEEeccchHHHHHHHHhCCCC------ccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 168 EEEIYGRVGEKNELLSKLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|.+..++.+.+++..... ......+-|-|+|..|+|||+||+++.+
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999888732100 0011245788999999999999999976
No 281
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.67 E-value=0.033 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|.|+.|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 282
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.66 E-value=0.05 Score=58.17 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=34.2
Q ss_pred CcEEeccchHHHHHH---HHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLS---KLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~---~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.++.++.+.. ++..+. ...+-+-++|++|.||||+|+++.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 569999988775444 443322 12345779999999999999999883
No 283
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.65 E-value=0.031 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|.|+.|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 284
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.64 E-value=0.033 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 285
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.60 E-value=0.023 Score=51.62 Aligned_cols=23 Identities=43% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998873
No 286
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.58 E-value=0.031 Score=50.45 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 287
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.58 E-value=0.039 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCchhHHHHHHHh
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDC 217 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~ 217 (713)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999999986
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.57 E-value=0.027 Score=51.78 Aligned_cols=21 Identities=38% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|-|+|+.|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998765
No 289
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.57 E-value=0.05 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|+|.+|+|||||+..+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999988776
No 290
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.55 E-value=0.037 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|||.|..|.|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999876
No 291
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.54 E-value=0.045 Score=55.60 Aligned_cols=24 Identities=42% Similarity=0.401 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+-|+|.+|+||||||+.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456889999999999999999984
No 292
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.04 Score=57.76 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=38.1
Q ss_pred CCCcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 167 DEEEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 167 ~~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.++.|.++.+++|.+.+...-.. +-...+=|-++|++|.|||+||+++.+.
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457899998888887766421000 0123556889999999999999999883
No 293
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.52 E-value=0.026 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 294
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.52 E-value=0.026 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 295
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.47 E-value=0.026 Score=57.61 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=34.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++|++..++.+...+..+ .-+-++|.+|+||||||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 35889888888888887642 2467899999999999999876
No 296
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.47 E-value=0.045 Score=58.18 Aligned_cols=30 Identities=33% Similarity=0.286 Sum_probs=24.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCC
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFD 227 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~ 227 (713)
..-+.|+|.+|+||||||+.+.+ .+...|.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~ 159 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEP 159 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCC
Confidence 56788999999999999999998 4545553
No 297
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.47 E-value=0.069 Score=53.74 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|||+|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 298
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.45 E-value=0.036 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 299
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.44 E-value=0.034 Score=51.56 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 300
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.40 E-value=0.023 Score=53.70 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 301
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.39 E-value=0.035 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|.|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 302
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.39 E-value=0.047 Score=51.79 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=28.0
Q ss_pred chHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 176 GEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+..+++.+.+. .....+|.|+|.+|+|||||+..+...
T Consensus 16 ~~~~~~~~~~~------~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 16 RLAEKNREALR------ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHH------HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhc------ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555443 235789999999999999999888763
No 303
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.38 E-value=0.034 Score=51.60 Aligned_cols=24 Identities=17% Similarity=0.499 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-++|.|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999876
No 304
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.38 E-value=0.035 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|+|.+|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999887
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.37 E-value=0.03 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.2
Q ss_pred EEEEEecCCchhHHHHHHHhchHH
Q 043964 198 IISIVGMGGIGKTTLAQLDCNHEE 221 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~~~ 221 (713)
+++|+|..|+|||||++.+....+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988533
No 306
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.35 E-value=0.068 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...-|.|+|.+|+|||||+..+.++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4667899999999999999998765
No 307
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.31 E-value=0.038 Score=59.39 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=34.0
Q ss_pred cEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 170 EIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++|.+..++.+...+..+ .-|-++|.+|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4788888888888777642 24678999999999999999883
No 308
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.26 E-value=0.049 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+.+-++|++|+|||+||+++.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999984
No 309
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.19 E-value=0.043 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|+|.|+.|.||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999877
No 310
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.19 E-value=0.032 Score=51.19 Aligned_cols=23 Identities=39% Similarity=0.300 Sum_probs=16.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 311
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.05 Score=57.10 Aligned_cols=54 Identities=24% Similarity=0.154 Sum_probs=38.2
Q ss_pred CCCCcEEeccchHHHHHHHHhCC---CC----ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 166 IDEEEIYGRVGEKNELLSKLLCE---SS----EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 166 ~~~~~~vG~~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.-+++.|.++.+++|.+.+... +. -+-...+=|-++|++|.|||+||++|.+.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33457889988888877766421 10 00123567889999999999999999984
No 312
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.15 E-value=0.043 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 313
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.15 E-value=0.048 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
No 314
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.14 E-value=0.039 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|+.|+|||||++.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999876
No 315
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.11 E-value=0.081 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+|+|+|..|+||||+++.+..-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999998873
No 316
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.09 E-value=0.058 Score=61.95 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=37.9
Q ss_pred CCCcEEeccchHHHHHHHHhCC---CC--c--cCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 167 DEEEIYGRVGEKNELLSKLLCE---SS--E--QQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 167 ~~~~~vG~~~~~~~l~~~L~~~---~~--~--~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+++|.+..++++.+++... +. . .-.....|.++|.+|.||||||+.+.+
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3456999999888888877531 00 0 012345689999999999999999976
No 317
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.04 E-value=0.044 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999875
No 318
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.04 E-value=0.041 Score=56.85 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=37.7
Q ss_pred CCCCcEEeccchHHHHHHHHhCC---CC----ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 166 IDEEEIYGRVGEKNELLSKLLCE---SS----EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 166 ~~~~~~vG~~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.-+++.|.++.+++|.+.+... +. -+-...+=|-++|++|.|||+||++|.+.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 33457899998888877765421 00 00123456789999999999999999883
No 319
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.03 E-value=0.043 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999876
No 320
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.01 E-value=0.091 Score=53.00 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhch
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
....+|+|+|.+|+||||++..+..-
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988763
No 321
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.97 E-value=0.052 Score=54.31 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.+++|+|..|+||||+++.+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998873
No 322
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.97 E-value=0.082 Score=53.12 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=28.0
Q ss_pred hHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+.+.+++..... .....+-++|..|+|||+||+++.+.
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445555553221 12457789999999999999999984
No 323
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.96 E-value=0.12 Score=47.69 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=66.0
Q ss_pred CCCceeEEEecCC-cCCCcchhhhHHHHHHccCCceeEEEeCCCCcccchhhcccCcchhccCcCCccccCCcccccc--
Q 043964 399 RVKRMRSLFIGGN-MLDNSSLNGKMLKELFEKLTSLRVLNIGKWSISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK-- 475 (713)
Q Consensus 399 ~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~-- 475 (713)
+-+.|++|.+.++ .+.... ...+...+..-..|+.|+|++|.+.+ .....+-+.+..=..|++|+|++|. |..
T Consensus 39 ~n~~L~~L~L~~nn~igd~g--a~~la~aL~~N~~L~~L~L~~n~igd-~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKER--IRSLIEAACNSKHIEKFSLANTAISD-SEARGLIELIETSPSLRVLNVESNF-LTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHH--HHHHHHHHTTCSCCCEEECTTSCCBH-HHHTTHHHHHHHCSSCCEEECCSSB-CCHHH
T ss_pred cCCCccEEECCCCCCCCHHH--HHHHHHHHhhCCCcCEEEccCCCCCh-HHHHHHHHHHhcCCccCeEecCCCc-CCHHH
Confidence 4456777887764 322111 12244556677788888888887542 1122344455555678888888877 542
Q ss_pred ---cCccccCCCCCcEEeccCccC--cc-----ccchhhccCCccceeeccCc
Q 043964 476 ---LPEPLCELYNLEKLDISHCWY--LK-----ELPEGIGKLINMKHLLNERT 518 (713)
Q Consensus 476 ---lp~~i~~L~~L~~L~l~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~ 518 (713)
+-+.+..-..|++|+|+++.. +. .+-..+..=+.|+.|+++.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 333444556688888875431 11 12223444466777777654
No 324
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.95 E-value=0.042 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999874
No 325
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.052 Score=56.95 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=38.0
Q ss_pred CCCcEEeccchHHHHHHHHhCC---CC----ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 167 DEEEIYGRVGEKNELLSKLLCE---SS----EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 167 ~~~~~vG~~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.++.|.++.+++|.+.+... +. -+-...+=|-++|++|.|||+||++|.+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3457899998888887764321 10 00224567889999999999999999883
No 326
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.90 E-value=0.049 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.+|.|.|+.|.||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998773
No 327
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.89 E-value=0.11 Score=44.48 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=14.7
Q ss_pred cCCccccCCcccccccCcc-ccCCCCCcEEeccCc
Q 043964 461 HLKYLNLSCLTSIRKLPEP-LCELYNLEKLDISHC 494 (713)
Q Consensus 461 ~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~ 494 (713)
+|++|+|++|. +..+|.. +..+++|++|+|.+|
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 34444554444 4444422 334444444444443
No 328
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.88 E-value=0.048 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.87 E-value=0.049 Score=51.41 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 330
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.84 E-value=0.037 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|+|+.|.||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.83 E-value=0.047 Score=50.68 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 332
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.81 E-value=0.062 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.099 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.+|+|.|..|.||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999999873
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.78 E-value=0.051 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...|.|.|+.|+||||+|+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 334
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.049 Score=57.14 Aligned_cols=52 Identities=19% Similarity=0.103 Sum_probs=36.9
Q ss_pred CCcEEeccchHHHHHHHHhC---CCC----ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLC---ESS----EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~---~~~----~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.++.|.++.+++|.+.+.. .+. -+-...+=|-++|++|.|||+||++|.+.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 35688888888888776432 100 00124567789999999999999999883
No 335
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.74 E-value=0.051 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 336
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.72 E-value=0.057 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+++|+|..|.|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999865
No 337
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.72 E-value=0.047 Score=58.67 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=36.5
Q ss_pred CcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++++.+++...... +-....-|-|+|.+|.|||++|+++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 46899999999988877532000 001234578999999999999999977
No 338
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.71 E-value=0.044 Score=54.10 Aligned_cols=50 Identities=24% Similarity=0.197 Sum_probs=31.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCc-------cCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++.|.++.++++.+.+...-.. .-.-.+=+.++|..|.||||||+.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45777777777776654211000 000011289999999999999999987
No 339
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.70 E-value=0.052 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+|+|+|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999988763
No 340
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.69 E-value=0.049 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 341
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.66 E-value=0.046 Score=53.26 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=31.7
Q ss_pred CcEEeccchHHHHHHHHhCCCCc------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
++++|.++.+.++.++...-... .-.-.+=+.|+|..|.||||||+.+.+.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46788776666555443211000 0000112899999999999999999873
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.65 E-value=0.05 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3679999999999999999998873
No 343
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.65 E-value=0.053 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 344
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.64 E-value=0.15 Score=46.98 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..--|.|+|.+|+|||||+..+.++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 3456789999999999999987763
No 345
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.64 E-value=0.066 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.004 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999865
No 346
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.63 E-value=0.053 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999876
No 347
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.63 E-value=0.11 Score=55.19 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.||+|+|..|+|||||++.+..-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999998873
No 348
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.59 E-value=0.055 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 349
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.59 E-value=0.038 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=15.9
Q ss_pred EEEEEEecCCchhHHHHHHHh-c
Q 043964 197 HIISIVGMGGIGKTTLAQLDC-N 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~-~ 218 (713)
.+|+|+|..|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999988 5
No 350
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.53 E-value=0.055 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999998874
No 351
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.53 E-value=0.048 Score=51.49 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 352
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.53 E-value=0.056 Score=50.68 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999866
No 353
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.52 E-value=0.056 Score=51.12 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999865
No 354
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.51 E-value=0.074 Score=56.71 Aligned_cols=52 Identities=23% Similarity=0.164 Sum_probs=34.5
Q ss_pred CCcEEeccchHHHHHHHHhCCCCc------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.++.++++.+....-... +-.-.+-|.++|++|.||||||+++.+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899988777766654321000 0011233779999999999999999883
No 355
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.50 E-value=0.058 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.49 E-value=0.056 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|.|+.|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998866
No 357
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.49 E-value=0.057 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 358
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.49 E-value=0.062 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 359
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.49 E-value=0.057 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999876
No 360
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.49 E-value=0.12 Score=54.52 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCc---cCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 178 KNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 178 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++.++|...... .....++|.|+|.||+||||++-.+..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45566666532210 123578999999999999999988876
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.42 E-value=0.07 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+||-|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999998876
No 362
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.41 E-value=0.059 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999876
No 363
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.41 E-value=0.046 Score=56.12 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=31.1
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..+..+...+.... ..-|-|+|..|+||||+|+.+.+
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 458898776555444443221 11278999999999999999987
No 364
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.40 E-value=0.06 Score=52.31 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999887
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.36 E-value=0.06 Score=50.91 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998865
No 366
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.34 E-value=0.061 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 367
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.32 E-value=0.075 Score=53.17 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+|+|+|.+|+||||++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4689999999999999999998873
No 368
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.31 E-value=0.063 Score=52.03 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 369
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.30 E-value=0.063 Score=54.22 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 370
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.28 E-value=0.1 Score=53.66 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++.+.+... .....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44455555432 23578999999999999999988765
No 371
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.24 E-value=0.065 Score=51.17 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|+|.|+.|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 372
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.22 E-value=0.064 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999887
No 373
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.22 E-value=0.065 Score=52.38 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.19 E-value=0.055 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 375
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.18 E-value=0.065 Score=52.70 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 376
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.17 E-value=0.067 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 377
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.14 E-value=0.071 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=21.8
Q ss_pred CCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 193 QKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 193 ~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
....++|+|+|-||+||||+|-.+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 34678999999999999999988776
No 378
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.12 E-value=0.075 Score=55.24 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=33.7
Q ss_pred cEEeccchHHHHHHHHh----CCCC--------------------ccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 170 EIYGRVGEKNELLSKLL----CESS--------------------EQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 170 ~~vG~~~~~~~l~~~L~----~~~~--------------------~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++|.+..++.+...+. .... ........|-++|..|+||||+|+.+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 47888888888877662 0000 0001234578999999999999999987
No 379
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.092 Score=48.39 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
....|.|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999888763
No 380
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.07 E-value=0.069 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 381
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.03 E-value=0.07 Score=51.85 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 382
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.02 E-value=0.14 Score=43.84 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=37.4
Q ss_pred ccccCCccccc--ccCccccCCCCCcEEeccCccCccccchh-hccCCccceeeccCcc
Q 043964 464 YLNLSCLTSIR--KLPEPLCELYNLEKLDISHCWYLKELPEG-IGKLINMKHLLNERTD 519 (713)
Q Consensus 464 ~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 519 (713)
.++.++.. ++ .+|..+. .+|++|+|++|. +..+|.+ +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45566655 66 7775443 468888888887 7778765 5778888888888873
No 383
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.99 E-value=0.071 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 384
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.94 E-value=0.063 Score=53.12 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCcEEeccchHHHHHHHHhCCCCc------cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-++++|.++.++++.++...-... .-.-.+=+.|+|..|.||||||+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 356888887666665544221000 0000112899999999999999999873
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.90 E-value=0.07 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..|.|.|+.|+||||+|+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 386
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.89 E-value=0.15 Score=57.70 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCCCcEEeccchHHHHHHHHhC---CCCc----cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 166 IDEEEIYGRVGEKNELLSKLLC---ESSE----QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 166 ~~~~~~vG~~~~~~~l~~~L~~---~~~~----~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
+.-+++.|.++.+++|.+++.. .+.- +-...+-|-++|++|.|||+||++|.+.
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445688999888888776532 1100 0124567889999999999999999874
No 387
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.89 E-value=0.054 Score=59.23 Aligned_cols=51 Identities=27% Similarity=0.303 Sum_probs=34.8
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|.++-++.+.+.+....-.......++.++|.+|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 357888777666655443211000113568999999999999999999873
No 388
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.83 E-value=0.1 Score=54.93 Aligned_cols=42 Identities=33% Similarity=0.345 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCc---cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 178 KNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 178 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++.+++...... ......+|.|+|.+|+||||++..+...
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666533110 0134679999999999999999888764
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.77 E-value=0.079 Score=50.04 Aligned_cols=21 Identities=33% Similarity=0.279 Sum_probs=19.0
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 390
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.76 E-value=0.088 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
....|+|+|..|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3568899999999999999988763
No 391
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.76 E-value=0.16 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...||.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 392
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.75 E-value=0.14 Score=53.63 Aligned_cols=25 Identities=40% Similarity=0.345 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...||.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999888763
No 393
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.74 E-value=0.15 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 45999999999999999999887
No 394
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.62 E-value=0.08 Score=50.41 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 395
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.52 E-value=0.077 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999865
No 396
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.52 E-value=0.088 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|.|+.|.||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 397
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.48 E-value=0.13 Score=47.76 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=20.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchH
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHE 220 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~ 220 (713)
..--|.|+|.+|+|||||...+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999999887653
No 398
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.46 E-value=0.087 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 399
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.41 E-value=0.089 Score=52.44 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345899999999999999999887
No 400
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.37 E-value=0.057 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=18.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 401
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.35 E-value=0.099 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+|+|+|.+|+||||++..+..-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998873
No 402
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.31 E-value=0.094 Score=51.25 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999986
No 403
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.30 E-value=0.11 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998763
No 404
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.11 Score=54.00 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=37.6
Q ss_pred CCCcEEeccchHHHHHHHHhC---CCC----ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 167 DEEEIYGRVGEKNELLSKLLC---ESS----EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 167 ~~~~~vG~~~~~~~l~~~L~~---~~~----~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-+++.|.++.+++|.+.+.. .+. -+-...+=|-++|++|.|||+||++|.+.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 345688998888887776532 110 00123567889999999999999999984
No 405
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.22 E-value=0.085 Score=56.59 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=34.0
Q ss_pred CCcEEeccchHHHHHHHHh---CCCC-c--cCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 168 EEEIYGRVGEKNELLSKLL---CESS-E--QQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 168 ~~~~vG~~~~~~~l~~~L~---~~~~-~--~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|.++.+.++.+... .... . .-.-.+=|.|+|..|.||||||+++.+.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568998877666665543 2100 0 0001123899999999999999999874
No 406
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.20 E-value=0.11 Score=50.63 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCeEEEEEEecCCchhHHHHHHHhc
Q 043964 194 KGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 194 ~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568899999999999999998875
No 407
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.18 E-value=0.17 Score=47.56 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..--|.|+|.+|+|||||+..+.++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998764
No 408
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.15 E-value=0.19 Score=53.92 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCc---cCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 178 KNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 178 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++.++|...... ......+|.|+|.+|+||||++.++..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555655432211 013578999999999999999988876
No 409
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.11 E-value=0.097 Score=47.96 Aligned_cols=22 Identities=45% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 410
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.03 E-value=0.11 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||++.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999876
No 411
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.02 E-value=0.1 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 412
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.98 E-value=0.11 Score=51.75 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=26.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
-+++-|+|++|+||||||.++... .-..++|+++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEe
Confidence 356789999999999999998763 2235677777
No 413
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.97 E-value=0.15 Score=47.21 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-..+-|+|++|.||||+|..+.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988773
No 414
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.96 E-value=0.11 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 415
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.92 E-value=0.11 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.88 E-value=0.11 Score=49.14 Aligned_cols=34 Identities=26% Similarity=0.125 Sum_probs=25.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEe
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCV 234 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v 234 (713)
-.++.|+|.+|+||||||+.+.. ..=..++|+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEEC
Confidence 45899999999999999999876 11235666543
No 417
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.81 E-value=0.13 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.0
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.--|.|+|.+|+|||||+..+.++
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345779999999999999987653
No 418
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.79 E-value=0.12 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999998763
No 419
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.79 E-value=0.12 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+.+++|.|+-|.|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 578999999999999999999875
No 420
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.65 E-value=0.13 Score=45.61 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 421
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.63 E-value=0.13 Score=50.51 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=25.3
Q ss_pred EEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEec
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVS 235 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs 235 (713)
++|+|.|-||+||||+|-.+..- ....=..++-|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCC
Confidence 58889999999999999887763 33221244555543
No 422
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.61 E-value=0.13 Score=51.03 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.++|+|.|-||+||||+|-.+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46899999999999999988876
No 423
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.55 E-value=0.16 Score=53.33 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=34.8
Q ss_pred CcEEeccchHHHHHHHHhCC--------CCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..++|.++.++.+...+... ........+-|-++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35899888888887666321 000011234588999999999999999877
No 424
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.50 E-value=0.12 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.+++|+|..|+|||||++.+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999998864
No 425
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.50 E-value=0.11 Score=57.76 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=34.2
Q ss_pred CcEEeccchHHHHHHHHhCCCCccCCCeEEEEEEecCCchhHHHHHHHhc
Q 043964 169 EEIYGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|.+..++.+...+..+ ..+.|+|..|.||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 35889888777777776632 3789999999999999999987
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.48 E-value=0.15 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.076 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|+|+|+.|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999986
No 427
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.45 E-value=0.12 Score=45.89 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988754
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.39 E-value=0.14 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...+|-|+|++|.||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998773
No 429
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.37 E-value=0.16 Score=46.50 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998763
No 430
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.37 E-value=0.13 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.+++|+|..|.|||||++.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 35899999999999999999875
No 431
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.27 E-value=0.14 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-.+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 432
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.22 E-value=0.14 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.2
Q ss_pred CeEEEEEEecCCchhHHHHHHHh
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDC 217 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~ 217 (713)
..--|.|+|.+|+|||||+..+.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999843
No 433
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.19 E-value=0.28 Score=45.25 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=58.5
Q ss_pred hhHHHHHHccCCceeEEEeCCC-CcccchhhcccCcchhccCcCCccccCCcccccc-----cCccccCCCCCcEEeccC
Q 043964 420 GKMLKELFEKLTSLRVLNIGKW-SISRWYFILEIPRNIEKLIHLKYLNLSCLTSIRK-----LPEPLCELYNLEKLDISH 493 (713)
Q Consensus 420 ~~~~~~~~~~~~~Lr~L~L~~~-~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~ 493 (713)
...+...+..-+.|+.|+|+++ .+.+ .....+-+.+..-..|+.|+|++|. +.. |.+.+..-+.|++|+|++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd-~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSK-ERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCH-HHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCH-HHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC
Confidence 3345566777889999999986 5321 1122344556666788888888887 542 333344556788888887
Q ss_pred ccCccc-----cchhhccCCccceeeccCc
Q 043964 494 CWYLKE-----LPEGIGKLINMKHLLNERT 518 (713)
Q Consensus 494 ~~~l~~-----lp~~i~~L~~L~~L~l~~~ 518 (713)
|. +.. +-..+..=+.|++|+|+++
T Consensus 108 N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 108 NF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred Cc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 76 332 2222333455777777654
No 434
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.18 E-value=0.15 Score=49.05 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...|.|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 435
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.16 E-value=0.14 Score=52.24 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||.+.+.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999876
No 436
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.11 E-value=0.14 Score=49.30 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.++.|+|.+|+|||||++.+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45999999999999999998776
No 437
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.10 E-value=0.14 Score=50.75 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35899999999999999998876
No 438
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.08 E-value=0.22 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...-|.|+|.+|+|||||+..+.++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 4567899999999999999988653
No 439
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.04 E-value=0.14 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|+|||||++.+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999998874
No 440
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.03 E-value=0.13 Score=45.91 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..--|.|+|.+|+|||||+..+.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999988753
No 441
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.03 E-value=0.34 Score=55.46 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=38.3
Q ss_pred CcEEeccchHHHHHHHHhCCCC---ccCCCeEEEEEEecCCchhHHHHHHHhch
Q 043964 169 EEIYGRVGEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 169 ~~~vG~~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..++|.+..++.+.+.+..... ........+-++|.+|+|||++|+++.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999988888888764321 11223447899999999999999999883
No 442
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.03 E-value=0.16 Score=46.45 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+.+|+|..|.|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 443
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.03 E-value=0.15 Score=46.15 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998763
No 444
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.02 E-value=0.14 Score=47.86 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.9
Q ss_pred EEEEEecCCchhHHHHHHHhc
Q 043964 198 IISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+|-|.|++|+||||.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999998876
No 445
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.93 E-value=0.14 Score=51.07 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..+|+++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999988763
No 446
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.93 E-value=0.13 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998754
No 447
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.88 E-value=0.2 Score=46.31 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|.||.|+||+|.|+.+-+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999988744
No 448
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.87 E-value=0.16 Score=51.05 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..+|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 449
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.83 E-value=0.15 Score=45.96 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..-|.|+|.+|+|||||++.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999988764
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.82 E-value=0.16 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 451
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.75 E-value=0.26 Score=50.31 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=30.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEeccccc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSETFE 239 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 239 (713)
-+++.|+|.+|+||||||..+..... ..=..++|++....++
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~ 102 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALD 102 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcC
Confidence 46899999999999999988876422 2223677887665443
No 452
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.68 E-value=0.32 Score=49.55 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=29.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEecccc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSETF 238 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~ 238 (713)
.-.++.|+|.+|+||||||..+..... ..=..++|+.....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccccc
Confidence 347999999999999999999887432 211346677654443
No 453
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.68 E-value=0.15 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+.| +|+|..|+|||||.+.++.
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC
T ss_pred EEE-EEECCCCCCHHHHHHHHhC
Confidence 444 9999999999999999876
No 454
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.63 E-value=0.16 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988754
No 455
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.60 E-value=0.14 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
....|.|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 456
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.60 E-value=0.16 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||.+.+.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 457
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.60 E-value=0.15 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.059 Sum_probs=20.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..--|.|+|.+|+|||||++.+.+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999987665
No 458
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.58 E-value=0.19 Score=46.24 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4668899999999999999998765
No 459
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.57 E-value=0.17 Score=52.80 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999887
No 460
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.49 E-value=0.14 Score=47.85 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-..|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999998764
No 461
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.48 E-value=0.16 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.-|.|+|.+|+|||||++.+.++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998764
No 462
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.47 E-value=0.29 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999998876
No 463
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.43 E-value=0.16 Score=45.30 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..-|.|+|.+|+|||||+..+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988754
No 464
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.43 E-value=0.28 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+++|+|..|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999886
No 465
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.36 E-value=0.23 Score=45.27 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...-|.|+|.+|+|||||.+.+.++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 466
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.36 E-value=0.2 Score=45.26 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
....|.|+|.+|+|||||+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999988663
No 467
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.34 E-value=0.17 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.8
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
--|.|+|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988763
No 468
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.30 E-value=0.18 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998776
No 469
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.30 E-value=0.17 Score=46.27 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...-|.|+|.+|+|||||++.+.++
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999987653
No 470
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.29 E-value=0.16 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.|+|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988753
No 471
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.25 E-value=0.2 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999876
No 472
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.23 E-value=0.17 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 4899999999999999999876
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.19 E-value=0.19 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.137 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...+|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999998876
No 474
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.15 E-value=0.16 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999876
No 475
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.14 E-value=0.17 Score=45.34 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999887753
No 476
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.13 E-value=0.18 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999876
No 477
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.12 E-value=0.18 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||.+.+.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4899999999999999999876
No 478
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.04 E-value=0.24 Score=44.27 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
+--|.|+|.+|+|||||+..+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 34588999999999999998864
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.98 E-value=0.17 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-..+||.|++|+||||+|+.+.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34689999999999999998866
No 480
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.98 E-value=0.16 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998755
No 481
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.96 E-value=0.18 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4899999999999999999876
No 482
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.93 E-value=0.18 Score=45.11 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
.--|.|+|.+|+|||||++.+.++
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999988664
No 483
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.87 E-value=0.19 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||.+.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999999876
No 484
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.84 E-value=0.18 Score=44.99 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=19.1
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.|+|..|+|||||+..+.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887654
No 485
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.77 E-value=0.33 Score=49.66 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=30.7
Q ss_pred eEEEEEEecCCchhHHHHHHHhchHHHHhhCCceeEEEeccccc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNHEEVIRKFDKILWVCVSETFE 239 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 239 (713)
-+++-|.|.+|+||||||..+..... ..=..++|++....++
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~ 104 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALD 104 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCcc
Confidence 45899999999999999988776422 2223678887765543
No 486
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.75 E-value=0.2 Score=51.16 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchhHHHHHHHhch
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-.+++|+|..|+|||||++.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999884
No 487
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.75 E-value=0.21 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhch
Q 043964 198 IISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 198 vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988764
No 488
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.73 E-value=0.27 Score=44.41 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988764
No 489
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.70 E-value=0.19 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.-.+|.|+|+.|.|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 346899999999999999999987
No 490
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.66 E-value=0.21 Score=46.19 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=19.8
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...-|.|+|.+|+|||||++.+.+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345678999999999999987766
No 491
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.65 E-value=0.15 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
.+++|+|..|.|||||.+.+.-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 492
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.62 E-value=0.22 Score=44.99 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..--|.|+|.+|+|||||+..+.++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 493
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.61 E-value=0.19 Score=44.59 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEEEecCCchhHHHHHHHhch
Q 043964 197 HIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
--|.|+|..|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999887653
No 494
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.61 E-value=0.36 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.8
Q ss_pred eEEEEEEecCCchhHHHHHHHhc
Q 043964 196 LHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 196 ~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
-.++.|.|.+|+||||||..+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999877655
No 495
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.54 E-value=0.19 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=19.7
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..--|.|+|.+|+|||||+..+.+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999976654
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.54 E-value=0.2 Score=44.50 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=18.3
Q ss_pred EEEEecCCchhHHHHHHHhc
Q 043964 199 ISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 199 i~I~G~gGiGKTTLa~~v~~ 218 (713)
|.|+|.+|+|||||+..+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998865
No 497
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.49 E-value=0.2 Score=46.05 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEEEecCCchhHHHHHHHhc
Q 043964 197 HIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 197 ~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
..|.|+|.+|+|||||.+.+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3679999999999999998775
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.45 E-value=0.21 Score=46.99 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
....|.|+|.+|+|||||+..+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988763
No 499
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.44 E-value=0.31 Score=44.22 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCchhHHHHHHHhc
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCN 218 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~ 218 (713)
...-|.|+|..|+|||||...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456788999999999999988875
No 500
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.43 E-value=0.2 Score=45.97 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=20.5
Q ss_pred CeEEEEEEecCCchhHHHHHHHhch
Q 043964 195 GLHIISIVGMGGIGKTTLAQLDCNH 219 (713)
Q Consensus 195 ~~~vi~I~G~gGiGKTTLa~~v~~~ 219 (713)
..--|.|+|.+|+|||||+..+.++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456789999999999999887653
Done!