BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043965
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 151/320 (47%), Gaps = 56/320 (17%)
Query: 8 YWCYICSQMVNPRMEAGIK--CPFCESGIVEQMSSSIAGDSINDGIHVRSDRALSLW--A 63
++CY C+Q V + + CP C G +E+ S+N + SD +
Sbjct: 21 FFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPN-SSDSFFPMADPF 79
Query: 64 SILLRMMTGLSPSRPRIAAHEHFNNANPRVEEAEQEREFESLLTRRMRRNSSASLSRMLQ 123
S LL ++ G S + P +F SL M+ + ++
Sbjct: 80 STLLPLIFGSSAAAPS-------------------GMDFMSLFGPSMQPQARSTQQNPQS 120
Query: 124 DIRFGITSRSDGPEALRERSGSLILVNPMNEEALIIQDHNT------TSSLGEYLVGPGL 177
D T + + LR SG+ +I++H + + G+Y GPGL
Sbjct: 121 DAFDPFTFLQNHLQTLRS-SGTHF--------EFVIENHPSDPGNRMPGNFGDYFFGPGL 171
Query: 178 DLLLQHLLENDPNRYGCPAANKAVLKALPTVTIDKNL------QCAVCLEEFEIGNEAKE 231
+ L+Q L ENDPNRYG P A+K+ + ALPTV + K++ QCAVC++EFE G++ K+
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQ 231
Query: 232 MPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFKIQGNGSGNRDESLGNEDAQNNLRLG 291
MPCKH FH +C++PWLE+ +SCPVCRF++P+DD + NR + G
Sbjct: 232 MPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYE-----NRSQGSQGSGDGQGSVEG 286
Query: 292 NGEDRVGNGRRYWIPIPWPF 311
R+ I +PWPF
Sbjct: 287 Q------QTPRFSIQLPWPF 300
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 150 bits (380), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 106/152 (69%), Gaps = 8/152 (5%)
Query: 166 SSLGEYLVGPGLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTIDK-NL-----QCAVC 219
+++G+Y +GPGL+ L+Q L ENDPNRYG P A+K+ ++ALP V I K NL QCAVC
Sbjct: 168 ANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVC 227
Query: 220 LEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFKIQGNGSGNRDESL 279
+++FE G EAK+MPCKH +H +C++PWLE+ +SCPVCR ++P+DD + G + S
Sbjct: 228 MDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTSG 287
Query: 280 GNEDAQNNLRLGNGEDRVGNGRRYWIPIPWPF 311
GN D N+ + +G++R R + I +PWPF
Sbjct: 288 GN-DGDNSGQRSDGDNRTVE-RSFRISLPWPF 317
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 137/299 (45%), Gaps = 41/299 (13%)
Query: 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQMS--SSIAGDSINDGIHVRSDRALSLWASI 65
++C+ C VNP++ I CP C+SG +E+++ SS G + + + LW +
Sbjct: 20 FFCHFCKGEVNPKLPEYI-CPRCDSGFIEEVTDDSSFLGGGGSRTDNSTATHFAELWDHL 78
Query: 66 LLRMMTGLSPSRPRIAAH--EHFNNANPRVEEAEQE-----REFESLLTRRMRRNSSASL 118
M L RP ++++ + N AN R + + R +TRR R S
Sbjct: 79 DHTMF--LQDFRPFLSSNPLDQDNRANERGHQTHTDFWGPSRPPRLPMTRRYRSRGSTRP 136
Query: 119 SR------MLQDIRFGITSRSDGPEALRERSGSLILVNPMNEEALIIQDHNTTSSLGEYL 172
R ++Q I G + S P + S S +L S+ G+Y
Sbjct: 137 DRSPAIEGIIQQIFAGFFANSAIPGSPHPFSWSGML----------------HSNPGDYA 180
Query: 173 VG-PGLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTI-----DKNLQCAVCLEEFEIG 226
G GLD ++ LL N G P A+K + +LPTVT+ + L+C VC E++ +
Sbjct: 181 WGQTGLDAIVTQLLGQLENT-GPPPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVE 239
Query: 227 NEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFKIQGNGSGNRDESLGNEDAQ 285
+ +++PC H FH CI+PWLE+ +CPVCR + +D Q S + + D+Q
Sbjct: 240 EKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSEASASNRFSNDSQ 298
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 128/279 (45%), Gaps = 44/279 (15%)
Query: 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQMS--SSIAGDSINDGIHVRSDRALSLWASI 65
++C+ C V+P++ I CP CESG +E+++ SS G + + + LW +
Sbjct: 20 FFCHFCKGEVSPKLPEYI-CPRCESGFIEEVTDDSSFLGGGGSRIDNTTTTHFAELWGHL 78
Query: 66 LLRMMTGLSPSRPRIAAH--EHFNNANPRVEEAEQEREFESLLTRRM------------R 111
M RP +++ + N AN R + + F R+ R
Sbjct: 79 DHTMF--FQDFRPFLSSSPLDQDNRANERGHQTHTD--FWGARPPRLPLGRRYRSRGSSR 134
Query: 112 RNSSASLSRMLQDIRFGITSRSDGPEALRERSGSLILVNPMNEEALIIQDHNTTSSLGEY 171
+ S ++ +LQ I G + S P + S S +L S+ G+Y
Sbjct: 135 PDRSPAIEGILQHIFAGFFANSAIPGSPHPFSWSGML----------------HSNPGDY 178
Query: 172 LVG-PGLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTI-----DKNLQCAVCLEEFEI 225
G GLD ++ LL N G P A+K + +LPTVT+ D L+C VC E++ +
Sbjct: 179 AWGQTGLDAIVTQLLGQLENT-GPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTV 237
Query: 226 GNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDD 264
E +++PC H FH CI+PWLE+ +CPVCR + +D
Sbjct: 238 EEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 276
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 121/282 (42%), Gaps = 52/282 (18%)
Query: 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQM-----------SSSIAGDSINDGIHVRSD 56
Y+C+ CS + PR+ I CP CESG +E++ + S A N D
Sbjct: 11 YFCHCCSVEIVPRLPDYI-CPRCESGFIEELPEETRNTENGSAPSTAPTDQNRQPFENVD 69
Query: 57 RALSLWASILLRMMTGLSPSRPRIAAHEHFNNANP-RVEEAEQEREFES----------- 104
+ L + G+ I A+ R E+ +ERE +S
Sbjct: 70 QHLFTLPQGYSQFAFGIFDDSFEIPTFPPGAQADDGRDPESRREREHQSRHRYGARQPRA 129
Query: 105 -LLTRRM--RRNSSASLSRMLQDIRFGITSRSDGPEALRERSGSLILVNPMNEEALIIQD 161
L RR R +L ++Q + GI S + P +L ++ NPM+
Sbjct: 130 RLTARRATGRHEGVPTLEGIIQQLVNGIISPAAVP-SLGLGPWGVLHSNPMD-------- 180
Query: 162 HNTTSSLGEYLVGP-GLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTIDKN-----LQ 215
Y G GLD ++ LL N G P A+K ++ALPTV + + L+
Sbjct: 181 ---------YAWGANGLDTIITQLL-NQFENTGPPPADKEKIQALPTVPVTEEHVGSGLE 230
Query: 216 CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCR 257
C VC E++ +G +++PC H FH CI+PWLE SCPVCR
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 118/267 (44%), Gaps = 25/267 (9%)
Query: 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQMSSSIAGDSINDGIHVRSDRALSLWASILL 67
Y+C+ C+ + PR+ CP C+SG +E++ + N + +D+ + +I
Sbjct: 11 YFCHSCTAEITPRLPE-YTCPRCDSGFIEELPETSRNSESNSSNNSGTDQNRPSFENIES 69
Query: 68 RMMTGLSPSRPRIAAHEHFNNANPRVE--------EAEQEREFESLLTRRMRRNSSASLS 119
T P F N ++ E+ R+ ES + R+ A
Sbjct: 70 AQFT-----LPSGYGQVTFGIFNEGLDFPMFGTSGPVEETRDGESRREHQSRQRYGARQP 124
Query: 120 RMLQDIRFGITSRSDGPEALRERSGSLI--LVNPMNEEALIIQDHNTT-SSLGEYLVGP- 175
R R G R++G L L+ ++ P L + S+ +Y G
Sbjct: 125 RARMSTRRG-AGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGAN 183
Query: 176 GLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTIDK-----NLQCAVCLEEFEIGNEAK 230
GLD ++ LL N G P A+ ++ALPT+ I + L+C VC E++ +G +
Sbjct: 184 GLDTIITQLL-NQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVR 242
Query: 231 EMPCKHKFHGECIMPWLEVRSSCPVCR 257
++PC H FH +CI+PWLE +CPVCR
Sbjct: 243 QLPCNHLFHNDCIIPWLEQHDTCPVCR 269
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 116/270 (42%), Gaps = 30/270 (11%)
Query: 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQMS----SSIAGDSINDGIHVRSDRALSLWA 63
Y+C+ CS + PR+ I CP CESG +E++ S+ G + + +S L
Sbjct: 11 YFCHCCSVEIVPRLPDYI-CPRCESGFIEELPEETRSTENGSAPSTAPTDQSRPPLEHVD 69
Query: 64 SILLRMMTGLSPSRPRIAAHEHFNNANPRVEEAEQEREFESLLTRRMRRNSSASLSRMLQ 123
L + G I P +A+ R+ ES R R+ + +
Sbjct: 70 QHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPES----RRERDHPSRHRYGAR 125
Query: 124 DIRFGITSRSDGPEALRERSGSLILVNPMNEEALIIQDHNTTSSLGEYLV---------- 173
R +T+R A G L + + I T SLG + V
Sbjct: 126 QPRARLTTR----RATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWGVLHSNPMDYAW 181
Query: 174 -GPGLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTIDK-----NLQCAVCLEEFEIGN 227
GLD ++ LL N G P A+K ++ALPTV + + L+C VC +++ +G
Sbjct: 182 GANGLDAIITQLL-NQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGE 240
Query: 228 EAKEMPCKHKFHGECIMPWLEVRSSCPVCR 257
+++PC H FH CI+PWLE SCPVCR
Sbjct: 241 RVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 270
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 118/283 (41%), Gaps = 53/283 (18%)
Query: 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQMS------------SSIAGDSINDGIHVRS 55
Y+C+ CS + PR+ I CP CESG +E++ S+ + D
Sbjct: 11 YFCHCCSVEIVPRLPDYI-CPRCESGFIEELPEETRSAENGSAPSTASADQSRQQPFENV 69
Query: 56 DRALSLWASILLRMMTGLSPSRPRIAAHEHFNNAN-PRVEEAEQEREFES---------- 104
D+ L G+ I A+ R E+ +ERE S
Sbjct: 70 DQPLFTLPQGYGHFAFGIFDDSFEIPTFPPGAQADDSRDPESRREREQHSRHRYGARQPR 129
Query: 105 --LLTRRM--RRNSSASLSRMLQDIRFGITSRSDGPEALRERSGSLILVNPMNEEALIIQ 160
L RR R +L ++Q + GI + + P L ++ NPM+
Sbjct: 130 ARLTARRATGRHEGVPTLEGIIQQLVNGIITPATIPN-LGLGPWGVLHSNPMD------- 181
Query: 161 DHNTTSSLGEYLVGP-GLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTIDK-----NL 214
Y G GLD ++ LL N G P A+K ++ALPTV + + L
Sbjct: 182 ----------YAWGANGLDAIITQLL-NQFENTGPPPADKEKIQALPTVPVTEEHVGSGL 230
Query: 215 QCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCR 257
+C VC +++ +G +++PC H FH CI+PWLE SCPVCR
Sbjct: 231 ECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 273
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 25/267 (9%)
Query: 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQMSSSIAGDSINDGIHVRSDRALSLWASILL 67
Y+C+ C+ + PR+ CP C+SG +E++ + N + R+D+ + ++
Sbjct: 11 YFCHSCTAEITPRLPE-YTCPRCDSGFIEELPETSRNSENNSSNNSRTDQNRPSFENLES 69
Query: 68 RMMTGLSPSRPRIAAHEHFNNANPRVE--------EAEQEREFESLLTRRMRRNSSASLS 119
T P F N ++ E+ R+ ES + R+ A
Sbjct: 70 AQFT-----LPSGYGQVTFGIFNEGLDFPIFGTSGPVEETRDGESRREHQSRQRYGARQP 124
Query: 120 RMLQDIRFGITSRSDGPEALRERSGSLI--LVNPMNEEALIIQDHNTT-SSLGEYLVGP- 175
R R R++G L L+ ++ P L + S+ +Y G
Sbjct: 125 RARLSTRRA-AGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGAN 183
Query: 176 GLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTIDK-----NLQCAVCLEEFEIGNEAK 230
GLD ++ LL N G P A+ ++ALPT+ I + L+C VC E++ +G +
Sbjct: 184 GLDTIITQLL-NQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVR 242
Query: 231 EMPCKHKFHGECIMPWLEVRSSCPVCR 257
++PC H FH +CI+PWLE +CPVCR
Sbjct: 243 QLPCNHLFHNDCIIPWLEQHDTCPVCR 269
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 5/75 (6%)
Query: 195 PAANKAVLKALPTVTI-----DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV 249
P A KAV+++LP V I DK ++C VCL EFE +EMPCKH FH CI+PWL
Sbjct: 53 PPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNK 112
Query: 250 RSSCPVCRFQVPSDD 264
+SCP+CR ++P+D+
Sbjct: 113 TNSCPLCRLELPTDN 127
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 79/136 (58%), Gaps = 12/136 (8%)
Query: 165 TSSLGEYLVGPGLDLLLQHLLEND-PNRYGCPAANKAVLKALPTVTIDKNL--------Q 215
T++L + L+ GLD+++ +L++ P R P A+K V++ LP + + L +
Sbjct: 173 TANLMQELIN-GLDMIIPDILDDGGPPR--APPASKEVVEKLPVIIFTEELLKKFGAEAE 229
Query: 216 CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFKIQGNGSGNR 275
C +C E IG++ +E+PCKH FH C+ PWL+ +SCP+CR ++P+DD K + +
Sbjct: 230 CCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDQKYENWKEREK 289
Query: 276 DESLGNEDAQNNLRLG 291
+ + A+N +R G
Sbjct: 290 EAEEERKGAENAVRGG 305
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 5/74 (6%)
Query: 195 PAANKAVLKALPTVTI-----DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV 249
P A+K V+++LP VT+ D L+C VCL EFE G +++PC+H FH CI+PWL
Sbjct: 53 PPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGK 112
Query: 250 RSSCPVCRFQVPSD 263
+SCP+CR ++P+D
Sbjct: 113 TNSCPLCRHELPTD 126
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 176 GLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTIDK-----NLQCAVCLEEFEIGNEAK 230
GLD ++ LL N G P A+ ++ALPT+ I + L+C VC E++ +G +
Sbjct: 183 GLDTIITQLL-NQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVR 241
Query: 231 EMPCKHKFHGECIMPWLEVRSSCPVCR 257
++PC H FH +CI+PWLE +CPVCR
Sbjct: 242 QLPCNHLFHNDCIIPWLEQHDTCPVCR 268
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 5/74 (6%)
Query: 195 PAANKAVLKALPTVTI-----DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV 249
P A K V+++LP VT+ D L+C VCL EFE G +++PC+H FH CI+PWL
Sbjct: 53 PPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGK 112
Query: 250 RSSCPVCRFQVPSD 263
+SCP+CR ++P+D
Sbjct: 113 TNSCPLCRHELPTD 126
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 195 PAANKAVLKALPTVTI---DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS 251
P A KAV+++LP I +L+C VCL EFE EMPC H FH CI+PWL +
Sbjct: 64 PPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTN 123
Query: 252 SCPVCRFQVPSDD 264
SCP+CR ++P+DD
Sbjct: 124 SCPLCRHELPTDD 136
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 9/102 (8%)
Query: 176 GLDLLLQHLLENDPNRYG----CPAANKAVLKALPTVTIDKN-----LQCAVCLEEFEIG 226
G + LLQ+L E D G P A K+ ++AL T + + + CAVC + +G
Sbjct: 208 GYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMG 267
Query: 227 NEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFKIQ 268
K++PC H +HG+CI+PWL R+SCPVCRFQ+ +DD + +
Sbjct: 268 ETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYE 309
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 195 PAANKAVLKALPTVTI---DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS 251
P A K V++ LP I L+C VCL EFE A EMPC H FH CI+PWL +
Sbjct: 52 PPAAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTN 111
Query: 252 SCPVCRFQVPSDD 264
SCP+CR+++P+DD
Sbjct: 112 SCPLCRYELPTDD 124
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 151 PMNEEALIIQDHNTTSSLGEYLVGP-GLDLLLQHLLENDPNRYGCPAANKAVLKAL---- 205
P N + N + + G+Y G GLD ++ L+E A + V+ +
Sbjct: 325 PFNPANMFSNIFNLSGNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQK 384
Query: 206 -PTVTIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQV 260
P ID+ +C +C+E F+I ++ ++PCKH FH CI PWL V +C +CR V
Sbjct: 385 PPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 195 PAANKAVLKALPTVTI---DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS 251
P A KAV+++LP I L+C VCL EFE EMPC H FH CI+PWL +
Sbjct: 64 PPAAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTN 123
Query: 252 SCPVCRFQVPSDD 264
SCP+CR ++P+DD
Sbjct: 124 SCPLCRHELPTDD 136
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Query: 195 PAANKAVLKALPTVTIDK-----NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV 249
P A+K + LP I K +L+C+VC E E G + + +PCKH+FH ECI+ WL+
Sbjct: 44 PEASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKK 103
Query: 250 RSSCPVCRFQVPSDD 264
+SCP+CR+++ +DD
Sbjct: 104 TNSCPLCRYELETDD 118
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 195 PAANKAVLKALPTVTI---DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS 251
P A K ++ LP I L+C VCL EFE A EMPC H FH CI+PWL +
Sbjct: 52 PPAAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTN 111
Query: 252 SCPVCRFQVPSDD 264
SCP+CR ++P+DD
Sbjct: 112 SCPLCRHELPTDD 124
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 189 PNRYGCPAANKAV-----------LKALPTVTIDKNLQCAVCLEEFEIGNEAKEMPCKHK 237
P Y PA +AV LKA+P D +C +CLEEF IG+E + +PC H
Sbjct: 201 PGLYLTPAQTEAVEALIQELPKFRLKAVP----DDCGECLICLEEFHIGHEVRGLPCAHN 256
Query: 238 FHGECIMPWLEVRSSCPVCRFQV-PSDDFKIQGN--GSGNRDESLGNEDA 284
FH ECI WL + CP CR V P D N SG S N +
Sbjct: 257 FHVECIDQWLRLNVKCPRCRCSVFPDLDLSALSNLQSSGTEQHSQVNTET 306
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 198 NKAVLKALPTVTI------DKNLQCAVCLEEFEIGNEAKEMP-CKHKFHGECIMPWLEVR 250
+++V+++LP L+CAVCL FE + +P CKH FH EC+ WL+
Sbjct: 122 DRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAH 181
Query: 251 SSCPVCRFQVPSDDFKIQGN 270
S+CP+CR++V +D + G+
Sbjct: 182 STCPLCRYRVDPEDILLIGD 201
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPS 262
+ L C+VCLE+ +G + +PC H+FH CI PWL + +CPVC+F+ S
Sbjct: 206 EDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKFRAHS 257
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 176 GLDLLLQHLLENDPNRYGCPAANKAVLKALPTVTIDKN-------LQCAVCLEEFEIGNE 228
GL ++ +H E P R N V+ +LPT T+ +CAVCL + ++
Sbjct: 66 GLPVIFRHPFEM-PKR----GLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDK 120
Query: 229 AKEMP-CKHKFHGECIMPWLEVRSSCPVCRFQV 260
A+E+P CKH FH +C+ WL S+CPVCR +V
Sbjct: 121 ARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEV 153
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 198 NKAVLKALPTVTIDKNLQ---CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL-EVRSSC 253
K LK +PT K Q CA+CL+E+E G++ + +PC H +H C+ PWL + R +C
Sbjct: 209 TKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTC 268
Query: 254 PVCR 257
P+C+
Sbjct: 269 PICK 272
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 198 NKAVLKALPTVTIDK-----NLQCAVCLEEFEIGNEAKEMP-CKHKFHGECIMPWLEVRS 251
N +++K+LP T ++C+VCL EF+ + MP CKH FH CI W S
Sbjct: 53 NPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHS 112
Query: 252 SCPVCRFQV 260
SCP+CR Q+
Sbjct: 113 SCPLCRSQI 121
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 17/197 (8%)
Query: 98 QEREFESLLTRRMRRNSSASLSRMLQDIRFGITSRSDGPEALRERSGSLILVNPMNEEAL 157
Q FE+ + + + S++ + +D+R I S + +IL + AL
Sbjct: 176 QRAGFEAAIVHNVHSDDLVSMTHVYEDLRGQIAIPSVFVSEAASQDLRVILGCNKSAHAL 235
Query: 158 IIQDHNTTSSLG-------EYLVGPGLDLL------LQHLL--ENDPNRYGCPAANKAVL 202
++ D LG +++G L L+ L HL + P
Sbjct: 236 LLPDDPPCHDLGCHPVLTVSWVLGCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTCQ 295
Query: 203 KALPTVTIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLE--VRSSCPVCRFQV 260
KA N CA+CL+E+E G++ K +PC H +H +CI PW R SCPVC+ V
Sbjct: 296 KAQVRTFTWHNDLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 355
Query: 261 PSDDFKIQGNGSGNRDE 277
+ + RDE
Sbjct: 356 AATEDSFDSTTYSFRDE 372
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 199 KAVLKALPTVTIDKNLQ---CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL-EVRSSCP 254
K LK LP K + CA+CL+E+E G++ + +PC H +H +C+ PWL + + +CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 255 VCRFQ-VPSDDFKIQGNGSGNRDESLGNEDAQNNLRL 290
VC+ + VPS QG+ D S + N L
Sbjct: 280 VCKQKVVPS-----QGDSDSETDSSQEENEVSENTPL 311
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 199 KAVLKALPTVTIDKNLQ---CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL-EVRSSCP 254
K LK LP K + CA+CLEE+E G++ + +PC H +H +C+ PWL + + +CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 255 VCRFQV 260
VC+ +V
Sbjct: 280 VCKQKV 285
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 199 KAVLKALPTVTIDKNLQ---CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL-EVRSSCP 254
K LK LP K + CA+CLEE+E G++ + +PC H +H +C+ PWL + + +CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 255 VCRFQV 260
VC+ +V
Sbjct: 280 VCKQKV 285
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 131 SRSDGPEALRERSGSLILVNPMNEEALIIQDHNTTSSLGEYLVGPGLDLLLQHLLENDPN 190
SR+ + L++ +++LV + L++Q S + +G +DL + ++ +
Sbjct: 243 SRAQEQKPLQQLWNAILLVAMLLCTGLVVQAQRQASRQSQRELGGQVDLFKRRVVRRLAS 302
Query: 191 RYGCPAANKAVLKALPTVTIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVR 250
+ LP + CAVCL+ F + +PCKH+FH +C+ PWL ++
Sbjct: 303 LKTRRCRLSRAAQGLPDPGAET---CAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQ 359
Query: 251 SSCPVCRFQVPSDDF 265
+CP+C+F V + +
Sbjct: 360 QTCPLCKFNVLGNRY 374
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQV 260
++ +C +CL E+E G E +E+PC H FH CI WL + S CP+C+F +
Sbjct: 334 EDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 144 GSLILVNPMNEEALIIQDHNTTSSLGEYLVGPGLDLL---LQHLLENDPNRYGCPAANKA 200
G+ +L+ P N L T +G ++ G L+ +QH NR K
Sbjct: 157 GARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGTVLIVRCIQHRKRLQRNRL-----TKE 211
Query: 201 VLKALPTVTIDKNLQ---CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL-EVRSSCPVC 256
LK +PT K + CA+CL+E+E G++ + +PC H +H C+ PWL + R +CP+C
Sbjct: 212 QLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPIC 271
Query: 257 R 257
+
Sbjct: 272 K 272
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 186 ENDPNRYGCPAANKAVLKALPTVT----IDKNLQ---CAVCLEEFEIGNEAKEMPCKHKF 238
++ +R C KA++K +PT T +K+L CA+C+E ++ + + +PCKH+F
Sbjct: 267 KDQQSRNLCSVTKKAIMK-IPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEF 325
Query: 239 HGECIMPWLEVRSSCPVCRFQV 260
H CI PWL +CP+C+ V
Sbjct: 326 HKNCIDPWLIEHRTCPMCKLDV 347
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 143 SGSLILVNPMNEEALIIQDHNTTSSLGEYLVGPGLDLL---LQHLLENDPNRYGCPAANK 199
G+ +L+ P N L T +G ++ G L+ +QH NR K
Sbjct: 156 KGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGTVLIVRCIQHRKRLQRNRL-----TK 210
Query: 200 AVLKALPTVTIDKNLQ---CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL-EVRSSCPV 255
LK +PT K + CA+CL+E+E G++ + +PC H +H C+ PWL + R +CP+
Sbjct: 211 EQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPI 270
Query: 256 CR 257
C+
Sbjct: 271 CK 272
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLE--VRSSCPVCRFQVP--SDDFKI 267
+N CA+CL+E+E G++ K +PC H +H +CI PW R SCPVC+ V D F
Sbjct: 305 RNDLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAGTEDSFDS 364
Query: 268 QGNGSGNRDESL 279
+ + D SL
Sbjct: 365 TTDSFSDEDPSL 376
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQV 260
+ ++ C +CL +E G E +PC H FH CI+ WL++R++CP+C++ +
Sbjct: 301 LAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 195 PAANKAVLKALPTVTIDKN-------LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL 247
P A+K + ALP + + ++ + C +C E+ G A E+PC H FH C+ WL
Sbjct: 502 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWL 561
Query: 248 EVRSSCPVCRFQVP 261
+ +CPVCR P
Sbjct: 562 QKSGTCPVCRCMFP 575
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 195 PAANKAVLKALPTVTIDKN-------LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL 247
P A+K + ALP + + ++ + C +C E+ G A E+PC H FH C+ WL
Sbjct: 567 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWL 626
Query: 248 EVRSSCPVCRFQVP 261
+ +CPVCR P
Sbjct: 627 QKSGTCPVCRCMFP 640
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 204 ALPTVTIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263
L T++ CA+CLE++ G E + +PC H+FH C+ PWL +CP CR +
Sbjct: 190 GLDTLSSSSISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNI--I 247
Query: 264 DFKIQGNGSGNRDESLGNEDAQNNLRL 290
+ K G+G G + SL + Q R+
Sbjct: 248 EQKKGGHGPGCVENSLSHGRQQQQQRV 274
>sp|A8WWR3|HRDL1_CAEBR E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
briggsae GN=hrdl-1 PE=3 SV=1
Length = 578
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 171 YLVGPGLDLLLQHLLENDPNRYGC-------PAANKAVLK----ALPTV-TIDKNLQCAV 218
++ PGL+L L + Y C +K + + A P+V + + +C V
Sbjct: 293 FVFAPGLNLTSIFFLYHMKLTYNCMREQLGRHRTHKKIFEHIESAYPSVKAANSDDRCIV 352
Query: 219 CLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFKIQGNGSGN 274
C +E+ ++ +PC H+FH C+M WL SSCP CR+ +PS + SGN
Sbjct: 353 C---WELLGTSRRLPCSHQFHDWCLMWWLAQDSSCPTCRYVIPSPQEEASRTDSGN 405
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 199 KAVLKALPTVTIDKNLQ---CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL-EVRSSCP 254
K LK LP K + CA+CL+E+E G++ + +PC H +H +C+ PWL + + +CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 255 VCRFQV 260
VC+ +V
Sbjct: 280 VCKQKV 285
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 199 KAVLKALPTVTIDKNLQ---CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL-EVRSSCP 254
K LK LP K + CA+CL+E+E G++ + +PC H +H +C+ PWL + + +CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 255 VCRFQV 260
VC+ +V
Sbjct: 280 VCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 199 KAVLKALPTVTIDKNLQ---CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL-EVRSSCP 254
K LK LP K + CA+CL+E+E G++ + +PC H +H +C+ PWL + + +CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 255 VCRFQV 260
VC+ +V
Sbjct: 280 VCKQKV 285
>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1
Length = 379
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 216 CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDF 265
CAVCL+ F + +PCKH+FH +C+ PWL ++ +CP+C+F V + +
Sbjct: 327 CAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKFNVLGNHY 376
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 216 CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQV 260
C+VC+ E+ GN+ +++PC H++H CI WL S+CP+CR V
Sbjct: 570 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 614
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 9/61 (14%)
Query: 216 CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFKIQGNGSGNR 275
C+VC+ E+ GN+ +++PC H++H CI WL S+CP+CR V S SGNR
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLS---------SGNR 596
Query: 276 D 276
+
Sbjct: 597 E 597
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQV 260
+ ++ +C +CL +E G E +E+PC H FH C+ WL + ++CP+C++ +
Sbjct: 347 LQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNI 397
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 216 CAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQV 260
C+VC+ E+ GN+ +++PC H++H CI WL S+CP+CR V
Sbjct: 568 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 612
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,427,097
Number of Sequences: 539616
Number of extensions: 5652460
Number of successful extensions: 14380
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 13861
Number of HSP's gapped (non-prelim): 648
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)