Query 043965
Match_columns 342
No_of_seqs 449 out of 1852
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:28:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2.3E-15 7.7E-20 118.5 5.7 73 190-262 10-89 (91)
2 2ect_A Ring finger protein 126 99.5 6.1E-14 2.1E-18 106.6 6.0 58 210-267 12-69 (78)
3 1iym_A EL5; ring-H2 finger, ub 99.4 4.8E-14 1.6E-18 99.9 3.6 51 211-261 3-54 (55)
4 1x4j_A Ring finger protein 38; 99.4 7.5E-14 2.6E-18 105.5 4.3 52 212-263 22-73 (75)
5 2ep4_A Ring finger protein 24; 99.4 1.5E-13 5.1E-18 103.4 5.2 54 210-263 12-65 (74)
6 2kiz_A E3 ubiquitin-protein li 99.4 1.8E-13 6.2E-18 101.5 4.4 53 211-263 12-64 (69)
7 2ecm_A Ring finger and CHY zin 99.3 9.4E-13 3.2E-17 93.1 4.0 50 212-261 4-54 (55)
8 3ng2_A RNF4, snurf, ring finge 99.3 6.4E-13 2.2E-17 98.8 3.0 56 210-265 7-66 (71)
9 2djb_A Polycomb group ring fin 99.3 1.4E-12 4.7E-17 97.8 4.7 55 209-266 11-66 (72)
10 1v87_A Deltex protein 2; ring- 99.3 1.6E-12 5.4E-17 105.8 5.3 53 211-263 23-95 (114)
11 2ea6_A Ring finger protein 4; 99.3 7.4E-13 2.5E-17 97.7 3.0 53 210-262 12-68 (69)
12 2yur_A Retinoblastoma-binding 99.3 3.8E-12 1.3E-16 96.0 5.1 54 209-265 11-67 (74)
13 2d8t_A Dactylidin, ring finger 99.3 1.8E-12 6.3E-17 96.8 3.1 51 211-264 13-63 (71)
14 2xeu_A Ring finger protein 4; 99.3 1.6E-12 5.6E-17 94.4 2.6 54 212-265 2-59 (64)
15 2ecl_A Ring-box protein 2; RNF 99.2 1.4E-12 4.7E-17 100.4 2.1 52 212-263 14-77 (81)
16 2ysl_A Tripartite motif-contai 99.2 3.5E-12 1.2E-16 95.3 4.2 53 209-264 16-71 (73)
17 1chc_A Equine herpes virus-1 r 99.2 3.7E-12 1.3E-16 94.0 4.0 50 212-263 4-53 (68)
18 2ecn_A Ring finger protein 141 99.2 2.4E-12 8.1E-17 95.7 2.5 51 211-265 13-63 (70)
19 2ct2_A Tripartite motif protei 99.2 6.1E-12 2.1E-16 97.2 4.6 57 208-264 10-70 (88)
20 2ecy_A TNF receptor-associated 99.2 4.2E-12 1.5E-16 93.4 3.4 52 210-264 12-64 (66)
21 1t1h_A Gspef-atpub14, armadill 99.2 5.8E-12 2E-16 95.5 4.0 52 210-264 5-57 (78)
22 4ayc_A E3 ubiquitin-protein li 99.2 3E-12 1E-16 108.1 2.1 49 212-263 52-100 (138)
23 3dpl_R Ring-box protein 1; ubi 99.2 5.5E-12 1.9E-16 102.2 3.5 50 212-261 36-100 (106)
24 2csy_A Zinc finger protein 183 99.2 7.2E-12 2.5E-16 95.9 3.4 48 211-261 13-60 (81)
25 2ecw_A Tripartite motif-contai 99.2 1.2E-11 4.3E-16 94.5 4.0 53 210-265 16-74 (85)
26 3lrq_A E3 ubiquitin-protein li 99.2 4.1E-12 1.4E-16 101.5 1.0 52 210-264 19-72 (100)
27 2egp_A Tripartite motif-contai 99.2 5.1E-12 1.8E-16 95.8 1.5 53 209-264 8-67 (79)
28 2ecv_A Tripartite motif-contai 99.2 1.5E-11 5.3E-16 93.9 4.0 53 209-264 15-73 (85)
29 2ysj_A Tripartite motif-contai 99.1 3.5E-11 1.2E-15 87.5 3.9 45 209-256 16-63 (63)
30 2y43_A E3 ubiquitin-protein li 99.1 1.5E-11 5.3E-16 97.6 1.6 50 211-263 20-70 (99)
31 3fl2_A E3 ubiquitin-protein li 99.1 2.9E-11 1E-15 99.9 2.9 49 211-262 50-99 (124)
32 2d8s_A Cellular modulator of i 99.1 6.6E-11 2.3E-15 91.0 4.7 52 212-264 14-72 (80)
33 2ckl_A Polycomb group ring fin 99.1 3.5E-11 1.2E-15 97.0 3.3 51 210-263 12-63 (108)
34 3ztg_A E3 ubiquitin-protein li 99.1 4.7E-11 1.6E-15 93.3 3.8 50 209-261 9-61 (92)
35 4a0k_B E3 ubiquitin-protein li 99.1 1.3E-11 4.4E-16 101.7 0.2 50 212-261 47-111 (117)
36 2ecj_A Tripartite motif-contai 99.0 6.1E-11 2.1E-15 84.4 2.7 44 210-256 12-58 (58)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 5.7E-11 1.9E-15 98.1 2.8 55 212-266 6-64 (133)
38 1jm7_A BRCA1, breast cancer ty 99.0 5.6E-11 1.9E-15 95.9 2.5 51 212-265 20-73 (112)
39 1g25_A CDK-activating kinase a 99.0 9.8E-11 3.3E-15 85.7 3.0 54 213-266 3-59 (65)
40 2kr4_A Ubiquitin conjugation f 99.0 1E-10 3.4E-15 90.8 3.0 51 210-263 11-61 (85)
41 2kre_A Ubiquitin conjugation f 99.0 1.8E-10 6.2E-15 92.2 4.1 53 210-265 26-78 (100)
42 1z6u_A NP95-like ring finger p 99.0 1.1E-10 3.6E-15 100.2 2.9 49 212-263 77-126 (150)
43 2ct0_A Non-SMC element 1 homol 99.0 2.1E-10 7.1E-15 86.9 4.1 52 212-265 14-67 (74)
44 1wgm_A Ubiquitin conjugation f 99.0 2E-10 6.8E-15 91.6 4.0 53 210-265 19-72 (98)
45 2ckl_B Ubiquitin ligase protei 99.0 9.5E-11 3.3E-15 101.5 2.2 49 211-262 52-102 (165)
46 3l11_A E3 ubiquitin-protein li 99.0 4.7E-11 1.6E-15 97.3 0.1 49 211-262 13-62 (115)
47 3hct_A TNF receptor-associated 99.0 1E-10 3.5E-15 95.9 2.0 51 210-263 15-66 (118)
48 1rmd_A RAG1; V(D)J recombinati 99.0 6.6E-11 2.3E-15 96.6 0.2 51 211-264 21-72 (116)
49 4ap4_A E3 ubiquitin ligase RNF 98.9 1.8E-10 6.1E-15 95.1 1.7 53 212-264 71-127 (133)
50 1jm7_B BARD1, BRCA1-associated 98.9 2.7E-10 9.1E-15 93.3 2.4 48 211-263 20-68 (117)
51 2y1n_A E3 ubiquitin-protein li 98.9 3.4E-10 1.2E-14 110.6 2.4 47 214-263 333-380 (389)
52 3knv_A TNF receptor-associated 98.9 3.6E-10 1.2E-14 95.9 2.2 52 209-263 27-79 (141)
53 1bor_A Transcription factor PM 98.9 5.3E-10 1.8E-14 79.8 2.6 46 212-263 5-50 (56)
54 1e4u_A Transcriptional repress 98.9 1E-09 3.5E-14 83.9 4.2 56 210-266 8-66 (78)
55 2vje_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 80.4 3.0 47 212-261 7-56 (64)
56 2c2l_A CHIP, carboxy terminus 98.8 1.2E-09 4.2E-14 101.0 2.7 52 209-263 204-256 (281)
57 4ic3_A E3 ubiquitin-protein li 98.8 7.9E-10 2.7E-14 83.4 0.6 45 211-262 22-67 (74)
58 2yu4_A E3 SUMO-protein ligase 98.8 1.7E-09 5.8E-14 85.3 1.6 51 211-264 5-65 (94)
59 2vje_B MDM4 protein; proto-onc 98.7 3.4E-09 1.2E-13 77.5 2.9 46 213-261 7-55 (63)
60 3hcs_A TNF receptor-associated 98.7 3.3E-09 1.1E-13 92.1 2.0 51 210-263 15-66 (170)
61 2f42_A STIP1 homology and U-bo 98.6 1.1E-08 3.8E-13 90.1 3.7 53 209-264 102-155 (179)
62 2ecg_A Baculoviral IAP repeat- 98.6 7E-09 2.4E-13 78.2 1.0 45 212-263 24-69 (75)
63 2yho_A E3 ubiquitin-protein li 98.5 1.9E-08 6.4E-13 76.9 0.5 45 212-263 17-62 (79)
64 2ea5_A Cell growth regulator w 98.5 6.4E-08 2.2E-12 71.8 3.1 45 212-263 14-59 (68)
65 3t6p_A Baculoviral IAP repeat- 98.5 3.2E-08 1.1E-12 95.7 1.7 45 211-262 293-338 (345)
66 2bay_A PRE-mRNA splicing facto 98.5 3.9E-08 1.3E-12 71.5 1.4 51 213-266 3-54 (61)
67 3k1l_B Fancl; UBC, ring, RWD, 98.4 4.3E-08 1.5E-12 93.8 2.0 52 212-263 307-374 (381)
68 3htk_C E3 SUMO-protein ligase 98.4 6.3E-08 2.1E-12 89.7 1.8 53 210-265 178-235 (267)
69 1wim_A KIAA0161 protein; ring 98.3 1.5E-07 5.1E-12 73.8 1.9 51 212-262 4-66 (94)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.6E-07 8.7E-12 67.0 2.6 48 212-262 5-59 (60)
71 3vk6_A E3 ubiquitin-protein li 97.9 4.6E-06 1.6E-10 66.0 2.4 47 215-263 3-50 (101)
72 3nw0_A Non-structural maintena 97.6 2.7E-05 9.1E-10 71.4 2.8 51 213-265 180-232 (238)
73 2ko5_A Ring finger protein Z; 96.3 0.0034 1.2E-07 48.8 4.1 56 205-265 20-76 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 92.5 0.042 1.4E-06 42.7 1.5 33 212-246 2-36 (101)
75 1wil_A KIAA1045 protein; ring 92.3 0.069 2.4E-06 40.7 2.5 37 209-246 11-47 (89)
76 2kdx_A HYPA, hydrogenase/ureas 91.3 0.092 3.1E-06 42.5 2.3 33 6-39 72-105 (119)
77 2lri_C Autoimmune regulator; Z 88.1 0.28 9.6E-06 35.6 2.5 44 213-259 12-59 (66)
78 3m62_A Ubiquitin conjugation f 85.4 0.39 1.3E-05 51.7 2.9 50 212-264 890-940 (968)
79 1dx8_A Rubredoxin; electron tr 84.9 0.67 2.3E-05 34.1 3.1 37 1-37 1-56 (70)
80 2l5u_A Chromodomain-helicase-D 83.8 0.49 1.7E-05 33.6 1.9 45 211-258 9-57 (61)
81 1fp0_A KAP-1 corepressor; PHD 83.4 0.63 2.2E-05 35.8 2.6 47 210-259 22-72 (88)
82 1we9_A PHD finger family prote 83.4 0.33 1.1E-05 34.6 0.9 47 212-258 5-57 (64)
83 1mm2_A MI2-beta; PHD, zinc fin 83.1 0.59 2E-05 33.1 2.1 46 212-260 8-57 (61)
84 4ayb_P DNA-directed RNA polyme 82.6 0.56 1.9E-05 31.7 1.7 33 5-37 1-36 (48)
85 3a43_A HYPD, hydrogenase nicke 82.2 0.52 1.8E-05 39.2 1.8 34 6-39 69-122 (139)
86 3h0g_L DNA-directed RNA polyme 81.7 0.77 2.6E-05 33.0 2.3 28 8-35 22-49 (63)
87 1f62_A Transcription factor WS 80.8 0.51 1.8E-05 32.0 1.1 44 215-258 2-49 (51)
88 2yql_A PHD finger protein 21A; 80.2 0.34 1.2E-05 33.7 -0.0 44 212-258 8-55 (56)
89 2k16_A Transcription initiatio 79.7 0.49 1.7E-05 34.8 0.7 49 213-262 18-71 (75)
90 3o36_A Transcription intermedi 78.6 0.7 2.4E-05 39.9 1.5 45 213-260 4-52 (184)
91 2e6r_A Jumonji/ARID domain-con 77.0 1 3.4E-05 34.7 1.8 49 211-259 14-66 (92)
92 3lqh_A Histone-lysine N-methyl 75.5 1.3 4.4E-05 38.6 2.3 48 214-261 3-65 (183)
93 2puy_A PHD finger protein 21A; 75.1 0.4 1.4E-05 33.8 -0.9 46 213-261 5-54 (60)
94 2lv9_A Histone-lysine N-methyl 74.7 1.3 4.5E-05 34.4 1.9 44 214-258 29-75 (98)
95 1xwh_A Autoimmune regulator; P 74.5 1.1 3.9E-05 32.1 1.4 44 212-258 7-54 (66)
96 1twf_L ABC10-alpha, DNA-direct 72.9 2.1 7.2E-05 31.4 2.5 25 8-32 29-53 (70)
97 2ysm_A Myeloid/lymphoid or mix 72.8 1.4 4.9E-05 34.7 1.7 46 212-257 6-55 (111)
98 2yt5_A Metal-response element- 71.3 0.85 2.9E-05 32.5 0.1 50 212-261 5-63 (66)
99 3i2d_A E3 SUMO-protein ligase 70.8 1.7 5.8E-05 41.9 2.0 51 213-265 249-303 (371)
100 3u5n_A E3 ubiquitin-protein li 70.5 1.3 4.6E-05 38.8 1.2 45 213-260 7-55 (207)
101 2kgg_A Histone demethylase jar 69.6 4.6 0.00016 27.4 3.5 43 215-257 4-52 (52)
102 2cs3_A Protein C14ORF4, MY039 69.6 0.89 3E-05 34.3 -0.2 37 212-249 14-52 (93)
103 3v43_A Histone acetyltransfera 69.3 1.9 6.5E-05 34.2 1.8 45 214-258 62-111 (112)
104 1wep_A PHF8; structural genomi 68.2 4.2 0.00014 30.0 3.4 46 214-260 13-64 (79)
105 4fo9_A E3 SUMO-protein ligase 68.1 2.1 7.1E-05 41.1 2.0 53 213-267 215-271 (360)
106 2l43_A N-teminal domain from h 66.7 0.99 3.4E-05 34.5 -0.5 54 210-263 22-79 (88)
107 2ct7_A Ring finger protein 31; 65.5 2.9 9.8E-05 31.5 2.0 32 8-39 26-58 (86)
108 3shb_A E3 ubiquitin-protein li 65.1 1.6 5.5E-05 32.5 0.5 44 215-258 28-76 (77)
109 1wev_A Riken cDNA 1110020M19; 63.2 2.8 9.5E-05 31.9 1.5 52 212-263 15-76 (88)
110 2gmg_A Hypothetical protein PF 63.0 4 0.00014 32.3 2.4 30 8-37 68-97 (105)
111 1weu_A Inhibitor of growth fam 62.8 4.9 0.00017 30.9 2.9 44 213-260 36-86 (91)
112 2ro1_A Transcription intermedi 62.4 2.4 8.1E-05 36.9 1.1 43 214-259 3-49 (189)
113 2e6s_A E3 ubiquitin-protein li 61.9 2.6 9E-05 31.3 1.1 44 215-258 28-76 (77)
114 2kn9_A Rubredoxin; metalloprot 59.8 7.7 0.00026 29.2 3.4 28 5-32 25-68 (81)
115 1wen_A Inhibitor of growth fam 59.7 5.6 0.00019 29.0 2.6 45 212-260 15-66 (71)
116 3asl_A E3 ubiquitin-protein li 58.6 2.8 9.4E-05 30.5 0.7 43 215-258 20-68 (70)
117 3qt1_I DNA-directed RNA polyme 58.4 5.4 0.00019 32.8 2.6 36 4-41 20-61 (133)
118 1s24_A Rubredoxin 2; electron 54.0 9.4 0.00032 29.1 3.1 28 5-32 33-76 (87)
119 3ask_A E3 ubiquitin-protein li 52.8 4.3 0.00015 36.4 1.1 44 215-258 176-224 (226)
120 2kwj_A Zinc finger protein DPF 52.2 1.7 5.8E-05 34.6 -1.5 48 214-261 59-110 (114)
121 2ku3_A Bromodomain-containing 51.5 2.7 9.1E-05 30.7 -0.4 48 211-258 14-65 (71)
122 2xb1_A Pygopus homolog 2, B-ce 51.1 7.2 0.00025 30.5 2.1 47 214-260 4-62 (105)
123 1dvp_A HRS, hepatocyte growth 51.0 13 0.00044 32.7 4.0 35 212-246 160-195 (220)
124 2con_A RUH-035 protein, NIN on 50.9 9 0.00031 28.7 2.5 30 8-39 16-45 (79)
125 1weo_A Cellulose synthase, cat 50.6 22 0.00076 27.2 4.6 51 213-263 16-71 (93)
126 2yw8_A RUN and FYVE domain-con 50.0 9.4 0.00032 28.4 2.5 35 212-246 18-53 (82)
127 1wem_A Death associated transc 49.7 2.9 9.8E-05 30.7 -0.5 45 214-259 17-70 (76)
128 3v43_A Histone acetyltransfera 49.4 12 0.00041 29.4 3.2 33 212-244 4-42 (112)
129 2ri7_A Nucleosome-remodeling f 49.2 3.5 0.00012 34.9 -0.0 47 212-259 7-59 (174)
130 2ysm_A Myeloid/lymphoid or mix 48.8 3.2 0.00011 32.6 -0.3 44 215-258 56-103 (111)
131 1wee_A PHD finger family prote 48.3 3.7 0.00013 29.8 -0.0 46 213-259 16-66 (72)
132 3t7l_A Zinc finger FYVE domain 48.1 11 0.00037 28.6 2.6 49 212-260 19-74 (90)
133 2vpb_A Hpygo1, pygopus homolog 48.1 8.1 0.00028 27.6 1.8 31 213-243 8-40 (65)
134 4rxn_A Rubredoxin; electron tr 48.0 12 0.00041 25.9 2.6 29 5-33 1-45 (54)
135 3h0g_I DNA-directed RNA polyme 47.5 9.4 0.00032 30.2 2.3 31 8-40 5-40 (113)
136 6rxn_A Rubredoxin; electron tr 47.0 14 0.00046 24.7 2.6 29 5-33 2-39 (46)
137 1z60_A TFIIH basal transcripti 47.0 5.9 0.0002 28.0 0.9 43 214-256 16-58 (59)
138 1z2q_A LM5-1; membrane protein 46.5 7.2 0.00025 29.1 1.4 35 212-246 20-55 (84)
139 1joc_A EEA1, early endosomal a 46.5 11 0.00039 30.3 2.6 34 213-246 69-103 (125)
140 2dj7_A Actin-binding LIM prote 45.9 14 0.00048 26.9 2.9 41 211-261 13-53 (80)
141 3o70_A PHD finger protein 13; 45.8 4.8 0.00016 29.0 0.3 45 213-258 19-66 (68)
142 1y02_A CARP2, FYVE-ring finger 45.4 3.4 0.00011 33.5 -0.7 48 213-260 19-67 (120)
143 1ryq_A DNA-directed RNA polyme 45.3 9.9 0.00034 27.7 1.9 19 9-32 13-31 (69)
144 2k2d_A Ring finger and CHY zin 44.9 10 0.00035 28.2 2.0 33 7-40 37-71 (79)
145 1wew_A DNA-binding family prot 44.6 5.1 0.00017 29.5 0.2 46 213-259 16-72 (78)
146 2v3b_B Rubredoxin 2, rubredoxi 43.7 18 0.00061 25.0 2.9 28 5-32 1-44 (55)
147 1wd2_A Ariadne-1 protein homol 43.5 7.4 0.00025 27.4 0.9 36 214-249 7-47 (60)
148 2cu8_A Cysteine-rich protein 2 43.1 15 0.00051 26.2 2.6 41 213-263 9-49 (76)
149 1iml_A CRIP, cysteine rich int 42.7 11 0.00037 26.9 1.8 9 216-224 3-11 (76)
150 2dar_A PDZ and LIM domain prot 42.5 17 0.0006 26.8 3.0 40 213-263 25-64 (90)
151 1e8j_A Rubredoxin; iron-sulfur 42.4 18 0.00061 24.7 2.7 27 6-32 2-44 (52)
152 3c6w_A P28ING5, inhibitor of g 42.3 5.8 0.0002 27.7 0.2 43 212-258 8-57 (59)
153 2rsd_A E3 SUMO-protein ligase 41.9 3.9 0.00013 29.4 -0.8 43 214-258 11-64 (68)
154 2vnf_A ING 4, P29ING4, inhibit 41.7 5.9 0.0002 27.8 0.2 42 213-258 10-58 (60)
155 1x4u_A Zinc finger, FYVE domai 41.6 15 0.00051 27.3 2.5 33 213-245 14-47 (84)
156 2kwj_A Zinc finger protein DPF 41.0 11 0.00037 29.8 1.7 33 214-246 2-41 (114)
157 1wfk_A Zinc finger, FYVE domai 40.9 16 0.00053 27.6 2.5 50 213-262 9-66 (88)
158 2lbm_A Transcriptional regulat 40.7 13 0.00045 30.8 2.2 43 213-258 63-116 (142)
159 1vfy_A Phosphatidylinositol-3- 40.2 16 0.00053 26.5 2.3 34 213-246 11-45 (73)
160 2co8_A NEDD9 interacting prote 39.1 24 0.00081 25.7 3.2 43 212-264 14-56 (82)
161 2m0e_A Zinc finger and BTB dom 39.1 12 0.0004 20.0 1.2 12 25-36 3-14 (29)
162 1x64_A Alpha-actinin-2 associa 38.3 21 0.00072 26.3 2.9 40 213-263 25-64 (89)
163 2o35_A Hypothetical protein DU 38.0 8.1 0.00028 30.2 0.4 12 237-248 42-53 (105)
164 3fyb_A Protein of unknown func 37.9 8.2 0.00028 30.1 0.4 12 237-248 41-52 (104)
165 2d8z_A Four and A half LIM dom 37.8 26 0.0009 24.2 3.2 39 214-263 6-44 (70)
166 2d8v_A Zinc finger FYVE domain 37.1 13 0.00045 26.8 1.4 30 212-245 7-37 (67)
167 4gne_A Histone-lysine N-methyl 37.0 26 0.0009 27.5 3.3 47 211-263 13-66 (107)
168 3mpx_A FYVE, rhogef and PH dom 36.8 7.3 0.00025 37.5 0.0 48 213-260 375-430 (434)
169 1x62_A C-terminal LIM domain p 36.7 16 0.00055 26.3 1.9 39 213-262 15-53 (79)
170 3zyq_A Hepatocyte growth facto 36.6 16 0.00053 32.4 2.2 49 212-260 163-220 (226)
171 1zbd_B Rabphilin-3A; G protein 35.8 15 0.00053 30.0 1.9 47 212-258 54-106 (134)
172 1yk4_A Rubredoxin, RD; electro 34.9 25 0.00087 23.9 2.6 25 8-32 3-43 (52)
173 2d8x_A Protein pinch; LIM doma 34.8 22 0.00077 24.7 2.4 40 213-263 5-44 (70)
174 1x4l_A Skeletal muscle LIM-pro 34.4 32 0.0011 24.0 3.2 42 214-263 6-48 (72)
175 1x4k_A Skeletal muscle LIM-pro 33.5 31 0.0011 23.9 3.0 41 214-263 6-46 (72)
176 1ard_A Yeast transcription fac 33.4 14 0.00047 19.8 0.9 12 25-36 3-14 (29)
177 1nyp_A Pinch protein; LIM doma 33.0 26 0.00089 24.0 2.5 39 214-263 6-44 (66)
178 1p7a_A BF3, BKLF, kruppel-like 32.5 17 0.00058 21.0 1.2 13 24-36 11-23 (37)
179 1znf_A 31ST zinc finger from X 32.1 15 0.00053 19.3 0.9 12 25-36 2-13 (27)
180 1wfp_A Zinc finger (AN1-like) 31.9 18 0.00062 26.6 1.5 26 8-37 26-51 (74)
181 3kqi_A GRC5, PHD finger protei 31.5 17 0.00059 26.3 1.3 46 215-260 11-62 (75)
182 1wyh_A SLIM 2, skeletal muscle 31.2 29 0.001 24.1 2.5 41 214-263 6-46 (72)
183 1klr_A Zinc finger Y-chromosom 31.0 19 0.00065 19.2 1.2 12 25-36 3-14 (30)
184 1a7i_A QCRP2 (LIM1); LIM domai 30.8 25 0.00087 25.2 2.2 41 213-263 7-47 (81)
185 1v6g_A Actin binding LIM prote 30.5 29 0.00099 24.9 2.5 39 214-263 16-54 (81)
186 2lvu_A Zinc finger and BTB dom 36.2 11 0.00037 19.9 0.0 13 25-37 3-15 (26)
187 2d8y_A Eplin protein; LIM doma 29.7 61 0.0021 23.7 4.2 42 212-263 14-55 (91)
188 3o7a_A PHD finger protein 13 v 29.5 12 0.00042 25.1 0.2 41 218-258 8-51 (52)
189 2kvh_A Zinc finger and BTB dom 29.4 13 0.00045 19.8 0.3 13 24-36 3-15 (27)
190 1paa_A Yeast transcription fac 29.1 18 0.00061 19.5 0.9 12 25-36 3-14 (30)
191 2cor_A Pinch protein; LIM doma 29.0 41 0.0014 24.1 3.1 40 213-263 15-54 (79)
192 3mjh_B Early endosome antigen 28.9 13 0.00044 23.2 0.2 12 213-224 5-16 (34)
193 1x63_A Skeletal muscle LIM-pro 28.8 41 0.0014 24.0 3.1 41 214-263 16-56 (82)
194 2cur_A Skeletal muscle LIM-pro 28.3 31 0.0011 23.8 2.2 39 214-263 6-44 (69)
195 1x68_A FHL5 protein; four-and- 28.1 33 0.0011 24.3 2.4 41 214-262 6-47 (76)
196 1pft_A TFIIB, PFTFIIBN; N-term 27.9 22 0.00075 23.5 1.2 32 8-39 6-39 (50)
197 1x61_A Thyroid receptor intera 27.7 45 0.0016 23.1 3.0 40 214-262 6-45 (72)
198 1wig_A KIAA1808 protein; LIM d 27.3 29 0.001 24.5 2.0 37 214-261 6-42 (73)
199 2jz8_A Uncharacterized protein 27.0 24 0.00083 26.8 1.5 16 23-38 47-62 (87)
200 2fiy_A Protein FDHE homolog; F 27.0 15 0.00051 34.4 0.3 47 211-259 180-231 (309)
201 1rik_A E6APC1 peptide; E6-bind 26.9 15 0.00053 19.6 0.3 12 25-36 3-14 (29)
202 2kfq_A FP1; protein, de novo p 26.7 22 0.00075 20.0 1.0 13 25-37 3-15 (32)
203 2akl_A PHNA-like protein PA012 26.4 17 0.00056 29.8 0.4 26 9-34 29-54 (138)
204 2elx_A Zinc finger protein 406 26.2 15 0.00053 20.8 0.2 13 24-36 7-19 (35)
205 1rim_A E6APC2 peptide; E6-bind 26.2 25 0.00086 20.0 1.2 12 25-36 3-14 (33)
206 2a20_A Regulating synaptic mem 26.0 8.7 0.0003 27.1 -1.1 47 212-258 8-59 (62)
207 3bvo_A CO-chaperone protein HS 25.9 29 0.00099 30.4 2.0 25 8-32 11-35 (207)
208 2dlo_A Thyroid receptor-intera 25.2 35 0.0012 24.4 2.1 40 213-263 15-54 (81)
209 3ql9_A Transcriptional regulat 25.2 35 0.0012 27.7 2.3 43 213-258 57-110 (129)
210 1g47_A Pinch protein; LIM doma 25.1 43 0.0015 23.5 2.5 42 213-263 11-52 (77)
211 2cuq_A Four and A half LIM dom 25.0 45 0.0015 23.6 2.6 39 214-263 16-54 (80)
212 2m0f_A Zinc finger and BTB dom 24.8 17 0.00059 19.3 0.2 11 25-35 3-13 (29)
213 2lvt_A Zinc finger and BTB dom 30.6 16 0.00053 19.7 0.0 13 25-37 3-15 (29)
214 1m3v_A FLIN4, fusion of the LI 24.8 32 0.0011 26.9 1.9 52 214-265 33-84 (122)
215 2kvf_A Zinc finger and BTB dom 24.7 18 0.0006 19.3 0.3 13 24-36 3-15 (28)
216 1x6a_A LIMK-2, LIM domain kina 24.6 33 0.0011 24.5 1.8 38 214-262 16-53 (81)
217 2l4z_A DNA endonuclease RBBP8, 24.3 34 0.0012 27.1 2.0 39 213-261 61-99 (123)
218 3lpe_B DNA-directed RNA polyme 24.3 33 0.0011 24.0 1.7 18 10-32 4-21 (59)
219 2jvm_A Uncharacterized protein 24.1 20 0.00069 26.8 0.5 17 23-39 52-68 (80)
220 2elr_A Zinc finger protein 406 24.0 25 0.00084 20.0 0.9 14 23-36 8-21 (36)
221 2l3k_A Rhombotin-2, linker, LI 23.9 38 0.0013 26.5 2.2 10 215-224 10-19 (123)
222 1x3h_A Leupaxin; paxillin fami 23.8 49 0.0017 23.4 2.6 39 214-263 16-54 (80)
223 2jne_A Hypothetical protein YF 23.8 20 0.00069 27.8 0.5 28 9-37 34-61 (101)
224 3ga8_A HTH-type transcriptiona 23.6 31 0.001 25.1 1.4 17 24-40 2-19 (78)
225 2m0d_A Zinc finger and BTB dom 23.5 19 0.00064 19.2 0.2 13 24-36 3-15 (30)
226 2kvg_A Zinc finger and BTB dom 23.4 12 0.00041 20.2 -0.7 12 25-36 4-15 (27)
227 2e72_A POGO transposable eleme 23.3 29 0.001 23.4 1.1 12 24-35 12-23 (49)
228 1wg2_A Zinc finger (AN1-like) 23.3 21 0.00071 25.6 0.4 26 8-37 16-41 (64)
229 2elq_A Zinc finger protein 406 23.2 20 0.00068 20.6 0.3 13 24-36 9-21 (36)
230 1srk_A Zinc finger protein ZFP 23.1 20 0.00068 20.4 0.3 13 24-36 7-19 (35)
231 1wff_A Riken cDNA 2810002D23 p 22.9 26 0.00091 26.5 1.0 27 8-37 26-52 (85)
232 3f6q_B LIM and senescent cell 22.9 46 0.0016 22.8 2.3 42 213-263 11-52 (72)
233 2elt_A Zinc finger protein 406 22.5 21 0.00071 20.4 0.3 13 24-36 9-21 (36)
234 2lvr_A Zinc finger and BTB dom 28.1 18 0.00063 19.4 0.0 14 24-37 3-16 (30)
235 2g6q_A Inhibitor of growth pro 22.4 16 0.00056 25.7 -0.3 44 213-258 11-59 (62)
236 2elp_A Zinc finger protein 406 22.3 21 0.00072 20.6 0.3 14 24-37 9-22 (37)
237 2enn_A NPKC-theta, protein kin 22.1 35 0.0012 24.8 1.5 24 8-31 35-58 (77)
238 2elm_A Zinc finger protein 406 21.9 23 0.0008 20.6 0.4 14 24-37 9-22 (37)
239 2l9z_A PR domain zinc finger p 21.7 35 0.0012 21.9 1.2 15 3-17 4-21 (39)
240 2zet_C Melanophilin; complex, 21.5 40 0.0014 28.2 1.9 46 212-258 67-116 (153)
241 2enz_A NPKC-theta, protein kin 21.3 33 0.0011 24.0 1.2 24 8-31 24-47 (65)
242 3p8b_A DNA-directed RNA polyme 21.1 41 0.0014 25.2 1.7 19 9-32 25-43 (81)
243 1x4w_A Hypothetical protein FL 21.0 12 0.0004 27.2 -1.3 28 8-37 16-44 (67)
244 2egq_A FHL1 protein; LIM domai 20.9 55 0.0019 22.9 2.4 42 214-263 16-59 (77)
245 1wfh_A Zinc finger (AN1-like) 20.4 28 0.00096 24.9 0.6 26 8-37 16-41 (64)
246 2b9d_A E7 protein; zinc finger 20.4 45 0.0015 22.7 1.7 24 9-32 10-49 (52)
247 2xjy_A Rhombotin-2; oncoprotei 20.3 53 0.0018 25.7 2.4 49 214-262 30-78 (131)
248 2elv_A Zinc finger protein 406 20.2 24 0.00084 20.2 0.3 13 24-36 9-21 (36)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=118.53 Aligned_cols=73 Identities=36% Similarity=0.873 Sum_probs=63.8
Q ss_pred CCCCCCcccHHHHHcCCcccccC-------cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCC
Q 043965 190 NRYGCPAANKAVLKALPTVTIDK-------NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPS 262 (342)
Q Consensus 190 ~~~g~~~~~~~~i~~~p~~~~~~-------~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (342)
...+..+++++.++.+|.+.+.+ ...|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||..+..
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567789999999999876642 45799999999988889999999999999999999999999999998864
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=6.1e-14 Score=106.58 Aligned_cols=58 Identities=40% Similarity=1.070 Sum_probs=50.6
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCCCccc
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFKI 267 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 267 (342)
..+...|+||++.|.....++.++|+|+||..||.+|++.+.+||+||..+.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 3456789999999987777888999999999999999999999999999998765543
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.43 E-value=4.8e-14 Score=99.93 Aligned_cols=51 Identities=51% Similarity=1.129 Sum_probs=46.3
Q ss_pred cCcccccccccccccCCceeEec-ccccccccchHHHhhcCCCCCCcccccC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMP-CKHKFHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
++...|+||++.|..++.+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999888888898 9999999999999999999999999874
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=7.5e-14 Score=105.47 Aligned_cols=52 Identities=33% Similarity=0.931 Sum_probs=47.1
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
+...|+||++.|..++.++.++|+|+||..||.+|++.+.+||+||+.+...
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4578999999999888889999999999999999999999999999988643
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=103.36 Aligned_cols=54 Identities=44% Similarity=0.993 Sum_probs=48.0
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
+.+...|+||++.|.....++.++|+|+||..||.+|++.+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345678999999999877888889999999999999999999999999988653
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=101.53 Aligned_cols=53 Identities=34% Similarity=0.973 Sum_probs=47.7
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
.....|+||++.|..+..++.++|+|.||..||.+|++.+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34578999999998777889999999999999999999999999999988654
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=9.4e-13 Score=93.07 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=43.3
Q ss_pred CcccccccccccccC-CceeEecccccccccchHHHhhcCCCCCCcccccC
Q 043965 212 KNLQCAVCLEEFEIG-NEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 212 ~~~~C~ICle~~~~~-~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
....|+||++.|..+ ..++.++|+|.||..||.+|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356899999999643 35778899999999999999999999999999874
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=6.4e-13 Score=98.76 Aligned_cols=56 Identities=20% Similarity=0.592 Sum_probs=47.0
Q ss_pred ccCcccccccccccccC----CceeEecccccccccchHHHhhcCCCCCCcccccCCCCc
Q 043965 210 IDKNLQCAVCLEEFEIG----NEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDF 265 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (342)
..+...|+||++.+... ..++.++|+|.||..||.+|++.+.+||+||..+...+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 34567899999999732 344888999999999999999999999999999876544
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=97.77 Aligned_cols=55 Identities=22% Similarity=0.549 Sum_probs=46.7
Q ss_pred cccCcccccccccccccCCceeEe-cccccccccchHHHhhcCCCCCCcccccCCCCcc
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFK 266 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 266 (342)
.+.+...|+||++.+. .++.+ +|+|.||..||..|++.+..||+||..+...+..
T Consensus 11 ~~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 11 ELTPYILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCGGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred hcCCCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 3456788999999998 56665 8999999999999999999999999998766543
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=1.6e-12 Score=105.77 Aligned_cols=53 Identities=21% Similarity=0.615 Sum_probs=42.4
Q ss_pred cCcccccccccccccCC---------------ceeEecccccccccchHHHh-----hcCCCCCCcccccCCC
Q 043965 211 DKNLQCAVCLEEFEIGN---------------EAKEMPCKHKFHGECIMPWL-----EVRSSCPVCRFQVPSD 263 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl-----~~~~~CP~CR~~l~~~ 263 (342)
..+..|+||++.|.... .++.++|+|+||..||.+|| ..+.+||+||..+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34568999999996432 33478899999999999999 4567999999988644
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=7.4e-13 Score=97.67 Aligned_cols=53 Identities=21% Similarity=0.592 Sum_probs=44.8
Q ss_pred ccCcccccccccccccC----CceeEecccccccccchHHHhhcCCCCCCcccccCC
Q 043965 210 IDKNLQCAVCLEEFEIG----NEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPS 262 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (342)
+.+...|+||++.|... ..++.++|+|.||..||..|++.+.+||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999842 234788999999999999999999999999998753
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.26 E-value=3.8e-12 Score=95.98 Aligned_cols=54 Identities=30% Similarity=0.627 Sum_probs=45.4
Q ss_pred cccCcccccccccccccCCceeEec-ccccccccchHHHhhcC--CCCCCcccccCCCCc
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMP-CKHKFHGECIMPWLEVR--SSCPVCRFQVPSDDF 265 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~~~~~ 265 (342)
.+.+...|+||++.|. .++.++ |+|.||..||..|+..+ ..||+||..+...+.
T Consensus 11 ~~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 11 PIPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CSCGGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred cCCCCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 3456789999999998 778899 99999999999999866 589999997654443
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-12 Score=96.82 Aligned_cols=51 Identities=29% Similarity=0.618 Sum_probs=45.2
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDD 264 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 264 (342)
.+...|+||++.+. .++.++|+|.||..||..|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 35678999999997 7788999999999999999999999999999986543
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=94.38 Aligned_cols=54 Identities=20% Similarity=0.614 Sum_probs=45.7
Q ss_pred CcccccccccccccC----CceeEecccccccccchHHHhhcCCCCCCcccccCCCCc
Q 043965 212 KNLQCAVCLEEFEIG----NEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDF 265 (342)
Q Consensus 212 ~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (342)
+...|+||++.+... ..++.++|+|.||..||.+|++.+.+||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 456899999999732 344788999999999999999999999999999876643
No 15
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.4e-12 Score=100.39 Aligned_cols=52 Identities=23% Similarity=0.588 Sum_probs=41.9
Q ss_pred Cccccccccccccc-----------CCceeEec-ccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEI-----------GNEAKEMP-CKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~-----------~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
++..|+||++.|.. ++.++.++ |+|.||..||.+||+.+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 35568888888753 34466666 999999999999999999999999987643
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.5e-12 Score=95.34 Aligned_cols=53 Identities=25% Similarity=0.639 Sum_probs=45.2
Q ss_pred cccCcccccccccccccCCceeEecccccccccchHHHhh---cCCCCCCcccccCCCC
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLE---VRSSCPVCRFQVPSDD 264 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~CR~~l~~~~ 264 (342)
.+.+...|+||++.+. .++.++|+|.||..||..|++ ....||+||..+..++
T Consensus 16 ~~~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred hCccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3456789999999998 788889999999999999997 4558999999987654
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=3.7e-12 Score=93.97 Aligned_cols=50 Identities=34% Similarity=0.834 Sum_probs=43.5
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
....|+||++.+. +.++.++|+|.||..||.+|++.+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 4568999999987 2358899999999999999999999999999988643
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.4e-12 Score=95.69 Aligned_cols=51 Identities=27% Similarity=0.843 Sum_probs=45.0
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCCCc
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDF 265 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (342)
.+...|+||++.+. . +.++|+|.||..||.+|+..+.+||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~---~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRA---D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCC---S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCcc---C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 45678999999988 3 789999999999999999999999999999876543
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.1e-12 Score=97.22 Aligned_cols=57 Identities=23% Similarity=0.552 Sum_probs=47.3
Q ss_pred ccccCcccccccccccccCCc-eeEecccccccccchHHHhhcC---CCCCCcccccCCCC
Q 043965 208 VTIDKNLQCAVCLEEFEIGNE-AKEMPCKHKFHGECIMPWLEVR---SSCPVCRFQVPSDD 264 (342)
Q Consensus 208 ~~~~~~~~C~ICle~~~~~~~-~~~lpC~H~Fh~~Ci~~Wl~~~---~~CP~CR~~l~~~~ 264 (342)
..+.+...|+||++.|...+. ++.++|+|.||..||..|++.+ ..||+||..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 344567899999999985443 8889999999999999999876 69999999886553
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.2e-12 Score=93.37 Aligned_cols=52 Identities=21% Similarity=0.608 Sum_probs=44.2
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhh-cCCCCCCcccccCCCC
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLE-VRSSCPVCRFQVPSDD 264 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~~ 264 (342)
+.+...|+||++.+. .++.++|+|.||..||.+|+. ....||+||..+..++
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 345688999999998 666789999999999999994 5669999999987653
No 21
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.21 E-value=5.8e-12 Score=95.53 Aligned_cols=52 Identities=15% Similarity=0.457 Sum_probs=45.8
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhhc-CCCCCCcccccCCCC
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV-RSSCPVCRFQVPSDD 264 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~~ 264 (342)
+.+.+.|+||++.|. .++.++|||+||..||..|+.. +.+||+||..+....
T Consensus 5 ~~~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 456789999999998 7888999999999999999987 779999999987553
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.20 E-value=3e-12 Score=108.08 Aligned_cols=49 Identities=39% Similarity=0.916 Sum_probs=44.3
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
++..|+||++.|. .++.++|||.||..||..|+..+.+||+||..+...
T Consensus 52 ~~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4568999999998 788999999999999999999999999999988644
No 23
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.20 E-value=5.5e-12 Score=102.21 Aligned_cols=50 Identities=28% Similarity=0.504 Sum_probs=42.4
Q ss_pred CcccccccccccccCC---------------ceeEecccccccccchHHHhhcCCCCCCcccccC
Q 043965 212 KNLQCAVCLEEFEIGN---------------EAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
++..|+||++.|...- .++.++|+|.||..||.+||..+.+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4578999999987431 2566889999999999999999999999999864
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=7.2e-12 Score=95.85 Aligned_cols=48 Identities=19% Similarity=0.610 Sum_probs=43.6
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
.....|+||++.|. .++.++|+|+||..||..|++....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34678999999997 6788999999999999999999999999999885
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=1.2e-11 Score=94.48 Aligned_cols=53 Identities=34% Similarity=0.812 Sum_probs=45.7
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhhc------CCCCCCcccccCCCCc
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV------RSSCPVCRFQVPSDDF 265 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~l~~~~~ 265 (342)
+.+...|+||++.+. .++.++|+|.||..||..|+.. ...||+||..+..++.
T Consensus 16 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 16 IKEEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCTTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred CccCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 456789999999998 6778999999999999999987 6689999999876543
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.16 E-value=4.1e-12 Score=101.46 Aligned_cols=52 Identities=27% Similarity=0.699 Sum_probs=45.2
Q ss_pred ccCcccccccccccccCCceeE-ecccccccccchHHHhhcC-CCCCCcccccCCCC
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPWLEVR-SSCPVCRFQVPSDD 264 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~l~~~~ 264 (342)
+.+...|+||++.|. .++. ++|||.||..||..|+..+ ..||+||..+...+
T Consensus 19 l~~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 19 IAEVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 445788999999998 6777 8999999999999999888 69999999986544
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.16 E-value=5.1e-12 Score=95.77 Aligned_cols=53 Identities=28% Similarity=0.684 Sum_probs=45.4
Q ss_pred cccCcccccccccccccCCceeEecccccccccchHHHhhc-------CCCCCCcccccCCCC
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV-------RSSCPVCRFQVPSDD 264 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~l~~~~ 264 (342)
.+.+...|+||++.|. .++.++|||.||..||..|+.. ...||+||..+...+
T Consensus 8 ~~~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 3456789999999998 6778999999999999999976 568999999987643
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=93.95 Aligned_cols=53 Identities=28% Similarity=0.762 Sum_probs=45.6
Q ss_pred cccCcccccccccccccCCceeEecccccccccchHHHhhc------CCCCCCcccccCCCC
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV------RSSCPVCRFQVPSDD 264 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~l~~~~ 264 (342)
.+.+...|+||++.+. .++.++|+|.||..||..|+.. ...||+||..+...+
T Consensus 15 ~~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 15 NVKEEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred HccCCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 3456788999999998 6778899999999999999987 679999999987654
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.5e-11 Score=87.54 Aligned_cols=45 Identities=27% Similarity=0.714 Sum_probs=39.2
Q ss_pred cccCcccccccccccccCCceeEecccccccccchHHHhh---cCCCCCCc
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLE---VRSSCPVC 256 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C 256 (342)
.+.+...|+||++.+. .++.++|+|+||..||.+|++ ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999998 778889999999999999998 45589998
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.10 E-value=1.5e-11 Score=97.56 Aligned_cols=50 Identities=32% Similarity=0.790 Sum_probs=43.8
Q ss_pred cCcccccccccccccCCceeEe-cccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
.+...|+||++.|. .++.+ +|||.||..||..|+..+..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 20 DDLLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 34678999999998 56676 8999999999999999889999999988653
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.09 E-value=2.9e-11 Score=99.91 Aligned_cols=49 Identities=24% Similarity=0.658 Sum_probs=43.3
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhcCC-CCCCcccccCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS-SCPVCRFQVPS 262 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~ 262 (342)
.+...|+||++.|. .++.++|||.||..||..|+..+. .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34678999999998 788899999999999999998555 89999998865
No 32
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.6e-11 Score=91.03 Aligned_cols=52 Identities=21% Similarity=0.627 Sum_probs=43.3
Q ss_pred CcccccccccccccCCceeEeccc-----ccccccchHHHhhcCC--CCCCcccccCCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCK-----HKFHGECIMPWLEVRS--SCPVCRFQVPSDD 264 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~-----H~Fh~~Ci~~Wl~~~~--~CP~CR~~l~~~~ 264 (342)
+...|.||++++..++. .++||+ |.||..||.+||..+. +||+||..+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 45689999999976655 468996 9999999999997764 8999999987553
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.09 E-value=3.5e-11 Score=97.04 Aligned_cols=51 Identities=33% Similarity=0.794 Sum_probs=45.0
Q ss_pred ccCcccccccccccccCCceeEe-cccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
+.+...|+||++.|. .++.+ +|||.||..||..|+..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 446789999999998 67776 9999999999999999999999999988654
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.09 E-value=4.7e-11 Score=93.32 Aligned_cols=50 Identities=28% Similarity=0.651 Sum_probs=43.3
Q ss_pred cccCcccccccccccccCCceeEec-ccccccccchHHHhhcC--CCCCCcccccC
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMP-CKHKFHGECIMPWLEVR--SSCPVCRFQVP 261 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~ 261 (342)
.+.+.+.|+||++.|. .++.++ |||.||..||..|+..+ ..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456789999999998 788999 99999999999999754 48999999873
No 35
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.08 E-value=1.3e-11 Score=101.69 Aligned_cols=50 Identities=28% Similarity=0.521 Sum_probs=0.9
Q ss_pred CcccccccccccccC-------------C--ceeEecccccccccchHHHhhcCCCCCCcccccC
Q 043965 212 KNLQCAVCLEEFEIG-------------N--EAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 212 ~~~~C~ICle~~~~~-------------~--~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
++..|+||++.|... + .+..++|+|.||..||.+||+.+.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 357899999999742 1 2334589999999999999999999999999864
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=6.1e-11 Score=84.42 Aligned_cols=44 Identities=39% Similarity=0.918 Sum_probs=37.7
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhh---cCCCCCCc
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLE---VRSSCPVC 256 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C 256 (342)
+.+...|+||++.+. .++.++|+|+||..||.+|+. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCS---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccC---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 445678999999998 667899999999999999954 56689998
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=5.7e-11 Score=98.12 Aligned_cols=55 Identities=20% Similarity=0.619 Sum_probs=46.7
Q ss_pred CcccccccccccccC----CceeEecccccccccchHHHhhcCCCCCCcccccCCCCcc
Q 043965 212 KNLQCAVCLEEFEIG----NEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFK 266 (342)
Q Consensus 212 ~~~~C~ICle~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 266 (342)
+...|+||++.|... ..++.++|||+||..||.+|++.+.+||+||..+......
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccc
Confidence 467899999999732 3348899999999999999999999999999999766543
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=5.6e-11 Score=95.94 Aligned_cols=51 Identities=29% Similarity=0.768 Sum_probs=43.7
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCC---CCCCcccccCCCCc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS---SCPVCRFQVPSDDF 265 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~---~CP~CR~~l~~~~~ 265 (342)
+...|+||++.+. .++.++|||.||..||..|+..+. .||+||..+.....
T Consensus 20 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 4568999999997 677789999999999999998654 89999998876543
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=9.8e-11 Score=85.73 Aligned_cols=54 Identities=17% Similarity=0.453 Sum_probs=42.3
Q ss_pred ccccccccc-ccccCCc-eeEecccccccccchHHHhhc-CCCCCCcccccCCCCcc
Q 043965 213 NLQCAVCLE-EFEIGNE-AKEMPCKHKFHGECIMPWLEV-RSSCPVCRFQVPSDDFK 266 (342)
Q Consensus 213 ~~~C~ICle-~~~~~~~-~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~ 266 (342)
+..|+||++ .+..... .+.++|||+||..||.+|+.. ...||+||..+...+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 567999999 7774322 246789999999999999754 45899999998766543
No 40
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.02 E-value=1e-10 Score=90.84 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=46.1
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
+.+.+.|+||++.|. +++.++|||+|+..||..||..+.+||+|+..+...
T Consensus 11 ~p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 345789999999999 899999999999999999999889999999988654
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.00 E-value=1.8e-10 Score=92.22 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=47.1
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCCCc
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDF 265 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (342)
+.+.+.|+||++.|. +++.++|||+||..||..||..+.+||+||.++...++
T Consensus 26 ~p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 26 APDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp CSTTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred CcHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 345789999999999 89999999999999999999988899999999876543
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.00 E-value=1.1e-10 Score=100.20 Aligned_cols=49 Identities=22% Similarity=0.623 Sum_probs=43.7
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCC-CCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS-SCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~ 263 (342)
+...|+||++.|. .++.++|+|.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4578999999998 788899999999999999998765 899999998765
No 43
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=2.1e-10 Score=86.93 Aligned_cols=52 Identities=19% Similarity=0.459 Sum_probs=42.4
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcC--CCCCCcccccCCCCc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVR--SSCPVCRFQVPSDDF 265 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~--~~CP~CR~~l~~~~~ 265 (342)
....|+||++.+..+. +...|+|.||..||.+||+.+ .+||+||..+..+..
T Consensus 14 ~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 3568999999998543 333799999999999999887 799999988765543
No 44
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.99 E-value=2e-10 Score=91.64 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=47.2
Q ss_pred ccCcccccccccccccCCceeEeccc-ccccccchHHHhhcCCCCCCcccccCCCCc
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCK-HKFHGECIMPWLEVRSSCPVCRFQVPSDDF 265 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (342)
+.+.+.|+||++.|. +++.++|| |+||+.||..||..+.+||+||.++...++
T Consensus 19 ~p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CCTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred CcHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 345789999999999 89999999 999999999999988899999999876543
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.99 E-value=9.5e-11 Score=101.50 Aligned_cols=49 Identities=31% Similarity=0.808 Sum_probs=42.4
Q ss_pred cCcccccccccccccCCceeEe-cccccccccchHHHhhc-CCCCCCcccccCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPWLEV-RSSCPVCRFQVPS 262 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~ 262 (342)
.+...|+||++.|. .++.+ +|||.||..||..|+.. +..||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45678999999998 56666 89999999999999987 6789999998854
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.99 E-value=4.7e-11 Score=97.28 Aligned_cols=49 Identities=33% Similarity=0.736 Sum_probs=43.2
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhc-CCCCCCcccccCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV-RSSCPVCRFQVPS 262 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~ 262 (342)
.+++.|+||++.|. .++.++|||.||..||..|+.. +..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45678999999998 7888999999999999999976 5689999998864
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.98 E-value=1e-10 Score=95.94 Aligned_cols=51 Identities=27% Similarity=0.690 Sum_probs=44.7
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhhcCC-CCCCcccccCCC
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS-SCPVCRFQVPSD 263 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~ 263 (342)
+.+...|+||++.+. .++.++|||.||..||..|+.... +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 456689999999998 778899999999999999998766 999999988654
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.97 E-value=6.6e-11 Score=96.57 Aligned_cols=51 Identities=35% Similarity=0.765 Sum_probs=44.6
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhc-CCCCCCcccccCCCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV-RSSCPVCRFQVPSDD 264 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~~ 264 (342)
.+...|+||++.+. .++.++|||.||..||..|+.. ..+||+||..+...+
T Consensus 21 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 21 VKSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 34678999999998 7788999999999999999987 679999999987543
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=1.8e-10 Score=95.08 Aligned_cols=53 Identities=23% Similarity=0.676 Sum_probs=45.1
Q ss_pred Cccccccccccccc----CCceeEecccccccccchHHHhhcCCCCCCcccccCCCC
Q 043965 212 KNLQCAVCLEEFEI----GNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDD 264 (342)
Q Consensus 212 ~~~~C~ICle~~~~----~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 264 (342)
+...|+||++.|.. +..++.++|+|.||..||.+|++.+.+||+||..+..++
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 45689999999973 223478899999999999999999999999999987654
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=2.7e-10 Score=93.29 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=42.2
Q ss_pred cCcccccccccccccCCceeEe-cccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
.+...|+||++.|. .++.+ +|||.||..||..|+. ..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 45688999999998 77788 8999999999999998 8899999988543
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.90 E-value=3.4e-10 Score=110.63 Aligned_cols=47 Identities=30% Similarity=0.796 Sum_probs=42.7
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhh-cCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLE-VRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~ 263 (342)
..|+||++.+. .++.+||||.||..||..|+. .+.+||+||..+...
T Consensus 333 ~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 68999999987 788999999999999999998 678999999988654
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.90 E-value=3.6e-10 Score=95.92 Aligned_cols=52 Identities=15% Similarity=0.507 Sum_probs=44.6
Q ss_pred cccCcccccccccccccCCceeEecccccccccchHHHhhcCC-CCCCcccccCCC
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS-SCPVCRFQVPSD 263 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~ 263 (342)
.+.+.+.|+||++.|. .++.++|||.||..||..|+.... .||+||.++..+
T Consensus 27 ~l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GCCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 3456789999999998 778899999999999999998665 899999987543
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=5.3e-10 Score=79.75 Aligned_cols=46 Identities=28% Similarity=0.673 Sum_probs=39.9
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
+...|+||++.|. .++.++|+|.||..||..| ...||+||..+...
T Consensus 5 ~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4578999999998 6789999999999999884 56899999988654
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=1e-09 Score=83.87 Aligned_cols=56 Identities=25% Similarity=0.570 Sum_probs=43.6
Q ss_pred ccCcccccccccccccCCceeEec--ccccccccchHHHhh-cCCCCCCcccccCCCCcc
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMP--CKHKFHGECIMPWLE-VRSSCPVCRFQVPSDDFK 266 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lp--C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~l~~~~~~ 266 (342)
+.++..|+||++.+... .++.+| |||.||..|+..|+. ....||+||+.+......
T Consensus 8 ~~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 45678999999988643 334454 999999999999874 356899999999776553
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.85 E-value=1.1e-09 Score=80.44 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=41.3
Q ss_pred CcccccccccccccCCceeEe--ccccc-ccccchHHHhhcCCCCCCcccccC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEM--PCKHK-FHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
++..|.||++.+. .++.+ ||||. ||..|+..|++.+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4568999999987 66666 99999 899999999998899999999874
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=1.2e-09 Score=101.00 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=44.8
Q ss_pred cccCcccccccccccccCCceeEecccccccccchHHHhhcCC-CCCCcccccCCC
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS-SCPVCRFQVPSD 263 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~ 263 (342)
.+...+.|+||++.|. +++.++|||+||..||..|+..+. +||+||.++...
T Consensus 204 ~~~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 204 DIPDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCCSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCCcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 3445789999999999 899999999999999999997644 599999988644
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.79 E-value=7.9e-10 Score=83.36 Aligned_cols=45 Identities=20% Similarity=0.544 Sum_probs=39.9
Q ss_pred cCcccccccccccccCCceeEeccccc-ccccchHHHhhcCCCCCCcccccCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHK-FHGECIMPWLEVRSSCPVCRFQVPS 262 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (342)
.+...|+||++.+. .++.+||||. ||..|+..| ..||+||..+..
T Consensus 22 ~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34578999999988 7889999999 999999998 889999998854
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=1.7e-09 Score=85.31 Aligned_cols=51 Identities=24% Similarity=0.636 Sum_probs=42.5
Q ss_pred cCcccccccccccccCCceeEec-ccccccccchHHHhhcC------CCCCC--cccc-cCCCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMP-CKHKFHGECIMPWLEVR------SSCPV--CRFQ-VPSDD 264 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~------~~CP~--CR~~-l~~~~ 264 (342)
.+.+.|+||++.|. +++.++ |||+||..||..||..+ .+||+ |+.. +...+
T Consensus 5 ~~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 35678999999999 888996 99999999999999754 48999 9876 54443
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.75 E-value=3.4e-09 Score=77.46 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=40.2
Q ss_pred cccccccccccccCCceeEe--ccccc-ccccchHHHhhcCCCCCCcccccC
Q 043965 213 NLQCAVCLEEFEIGNEAKEM--PCKHK-FHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
...|.||++... .+..+ ||||. ||..|+..|.+....||+||.++.
T Consensus 7 ~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 467999999876 55566 99998 999999999988889999999884
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.71 E-value=3.3e-09 Score=92.09 Aligned_cols=51 Identities=27% Similarity=0.690 Sum_probs=44.4
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhhcCC-CCCCcccccCCC
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS-SCPVCRFQVPSD 263 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~l~~~ 263 (342)
+.+.+.|+||++.|. .++.++|||+||..||.+|+.... +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 456789999999998 778899999999999999997654 999999988654
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.65 E-value=1.1e-08 Score=90.06 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=45.4
Q ss_pred cccCcccccccccccccCCceeEecccccccccchHHHhhcC-CCCCCcccccCCCC
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVR-SSCPVCRFQVPSDD 264 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~l~~~~ 264 (342)
.+.+.+.|+||++.|. +++.++|||+|+..||..|+..+ .+||+|+.++...+
T Consensus 102 ~ip~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 102 EIPDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCcHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 3456789999999999 88999999999999999999764 47999999886543
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=7e-09 Score=78.18 Aligned_cols=45 Identities=20% Similarity=0.546 Sum_probs=38.3
Q ss_pred CcccccccccccccCCceeEeccccc-ccccchHHHhhcCCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHK-FHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
+...|+||++.+. .++.+||+|. ||..|+.. ...||+||..+...
T Consensus 24 ~~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4567999999987 7888999999 99999954 37899999988654
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.49 E-value=1.9e-08 Score=76.88 Aligned_cols=45 Identities=36% Similarity=0.685 Sum_probs=39.2
Q ss_pred CcccccccccccccCCceeEeccccc-ccccchHHHhhcCCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHK-FHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
+...|+||++.+. .++.+||||. ||..|+..|. .||+||..+...
T Consensus 17 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEE
T ss_pred CCCEeEEeCcccC---cEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCe
Confidence 4568999999987 8899999999 9999998873 999999988654
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=6.4e-08 Score=71.81 Aligned_cols=45 Identities=27% Similarity=0.651 Sum_probs=38.7
Q ss_pred CcccccccccccccCCceeEeccccc-ccccchHHHhhcCCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHK-FHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
+...|.||++... .++.+||+|. ||..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 4568999999887 7899999999 99999973 47899999988654
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.47 E-value=3.2e-08 Score=95.66 Aligned_cols=45 Identities=27% Similarity=0.669 Sum_probs=40.2
Q ss_pred cCcccccccccccccCCceeEeccccc-ccccchHHHhhcCCCCCCcccccCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHK-FHGECIMPWLEVRSSCPVCRFQVPS 262 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (342)
.+...|+||++.+. .++.+||||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45678999999998 8889999999 999999988 789999998854
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.45 E-value=3.9e-08 Score=71.52 Aligned_cols=51 Identities=8% Similarity=0.164 Sum_probs=44.7
Q ss_pred cccccccccccccCCceeEe-cccccccccchHHHhhcCCCCCCcccccCCCCcc
Q 043965 213 NLQCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDFK 266 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 266 (342)
.+.|+||++.+. +++.+ +|||+|.+.||.+||+.+.+||+++.+|..+++.
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 357999999999 77888 8999999999999999888999999999766543
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.45 E-value=4.3e-08 Score=93.79 Aligned_cols=52 Identities=23% Similarity=0.674 Sum_probs=39.8
Q ss_pred CcccccccccccccCC-cee----EecccccccccchHHHhhcC-----------CCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGN-EAK----EMPCKHKFHGECIMPWLEVR-----------SSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~-~~~----~lpC~H~Fh~~Ci~~Wl~~~-----------~~CP~CR~~l~~~ 263 (342)
...+|+||++.+..+. .+. ..+|+|.||..||.+||+.. ++||+||.++...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 3468999999998622 221 23699999999999999653 4699999988654
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.40 E-value=6.3e-08 Score=89.69 Aligned_cols=53 Identities=26% Similarity=0.527 Sum_probs=43.7
Q ss_pred ccCcccccccccccccCCceeE-ecccccccccchHHHhhcC--CCCCC--cccccCCCCc
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPWLEVR--SSCPV--CRFQVPSDDF 265 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~~--~~CP~--CR~~l~~~~~ 265 (342)
......|+||++.|. .++. +.|||+||+.||..|+..+ ..||+ |+..+...++
T Consensus 178 ~~~el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 178 GKIELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp SBCCSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred CceeeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 345689999999998 6666 4899999999999999764 37999 9998866544
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.32 E-value=1.5e-07 Score=73.79 Aligned_cols=51 Identities=25% Similarity=0.603 Sum_probs=38.7
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcC--------CCCCC--cccc--cCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVR--------SSCPV--CRFQ--VPS 262 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~--------~~CP~--CR~~--l~~ 262 (342)
+..+|+||++.+.........+|+|.||..|+..++..+ ..||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 356899999998744333334799999999999998531 27999 9987 543
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.30 E-value=2.6e-07 Score=66.97 Aligned_cols=48 Identities=23% Similarity=0.666 Sum_probs=37.2
Q ss_pred CcccccccccccccCCceeEeccc--c---cccccchHHHhhc--CCCCCCcccccCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCK--H---KFHGECIMPWLEV--RSSCPVCRFQVPS 262 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~--H---~Fh~~Ci~~Wl~~--~~~CP~CR~~l~~ 262 (342)
+...|.||++... ....+||. | .||..||.+|+.. +.+||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4568999999743 33468854 4 8999999999964 5689999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.88 E-value=4.6e-06 Score=65.99 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=38.8
Q ss_pred cccccccccccCCceeEecccccccccchHHHhhc-CCCCCCcccccCCC
Q 043965 215 QCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV-RSSCPVCRFQVPSD 263 (342)
Q Consensus 215 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~l~~~ 263 (342)
.|.+|--.+. .-.+.+||+|+||.+|+..|.+. .++||.|+.++..-
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4888887776 35678899999999999999854 57999999988543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.57 E-value=2.7e-05 Score=71.41 Aligned_cols=51 Identities=20% Similarity=0.469 Sum_probs=40.4
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCC--CCCCcccccCCCCc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS--SCPVCRFQVPSDDF 265 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~--~CP~CR~~l~~~~~ 265 (342)
...|.||.+.+..+ .+.-.|+|.||..|+.+|++.+. .||.|+...+....
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 46799999998853 22233999999999999997765 89999998766543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.30 E-value=0.0034 Score=48.83 Aligned_cols=56 Identities=25% Similarity=0.541 Sum_probs=44.3
Q ss_pred CCcccccCcccccccccccccCCceeEecc-cccccccchHHHhhcCCCCCCcccccCCCCc
Q 043965 205 LPTVTIDKNLQCAVCLEEFEIGNEAKEMPC-KHKFHGECIMPWLEVRSSCPVCRFQVPSDDF 265 (342)
Q Consensus 205 ~p~~~~~~~~~C~ICle~~~~~~~~~~lpC-~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (342)
++...+-+...|..|+-..+ ..+.| .|.+|..|+.-.|.....||+|+.+|+.+-.
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred cCCccccCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 34444455678999997765 45555 5999999999999999999999999987743
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.49 E-value=0.042 Score=42.69 Aligned_cols=33 Identities=18% Similarity=0.547 Sum_probs=25.1
Q ss_pred CcccccccccccccCCceeE--ecccccccccchHHH
Q 043965 212 KNLQCAVCLEEFEIGNEAKE--MPCKHKFHGECIMPW 246 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~--lpC~H~Fh~~Ci~~W 246 (342)
++..|.||++.+.. .++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 34679999976432 3344 889999999999983
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.35 E-value=0.069 Score=40.71 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=24.5
Q ss_pred cccCcccccccccccccCCceeEecccccccccchHHH
Q 043965 209 TIDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPW 246 (342)
Q Consensus 209 ~~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~W 246 (342)
.+..+..|.||-- +..++....--|+-+||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 3446788999953 332222222238999999999986
No 76
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=91.26 E-value=0.092 Score=42.47 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=25.6
Q ss_pred CceeeeccCceeecCCCCCc-cCCCCCCCceeccc
Q 043965 6 VGYWCYICSQMVNPRMEAGI-KCPFCESGIVEQMS 39 (342)
Q Consensus 6 ~~ywCh~C~~~V~p~~~~e~-~CP~C~sGFvEE~~ 39 (342)
+.|||..|...+... .... +||.|++..++-+.
T Consensus 72 ~~~~C~~CG~~~e~~-~~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 72 VELECKDCSHVFKPN-ALDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp CEEECSSSSCEECSC-CSTTCCCSSSSSCCCEEEE
T ss_pred ceEEcCCCCCEEeCC-CCCCCcCccccCCCcEEec
Confidence 349999999998743 3467 89999999776544
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.06 E-value=0.28 Score=35.60 Aligned_cols=44 Identities=25% Similarity=0.541 Sum_probs=31.5
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCcccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRFQ 259 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 259 (342)
...|.||.+. ++.+.--.|...||..|+.+.|.... .||.|+..
T Consensus 12 ~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4569999753 33333334999999999998886543 79999753
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.38 E-value=0.39 Score=51.67 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=44.2
Q ss_pred CcccccccccccccCCceeEeccc-ccccccchHHHhhcCCCCCCcccccCCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCK-HKFHGECIMPWLEVRSSCPVCRFQVPSDD 264 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 264 (342)
+.+.|+|-++.+. +++.+|.| +.|-+.+|.+||..+.+||+=|.++....
T Consensus 890 ~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 3578999999999 89999987 68999999999999999999999887554
No 79
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=84.86 E-value=0.67 Score=34.06 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=29.7
Q ss_pred CCCCCCceeeeccCceeecC----------------CCCCccCCCCCC---Cceec
Q 043965 1 MGDAMVGYWCYICSQMVNPR----------------MEAGIKCPFCES---GIVEQ 37 (342)
Q Consensus 1 m~~~~~~ywCh~C~~~V~p~----------------~~~e~~CP~C~s---GFvEE 37 (342)
|+.+|..|-|-.|--...+. ++++.+||.|+- -|+..
T Consensus 1 m~~~m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 1 MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp CBCCSSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGGGEEEC
T ss_pred CCCCCceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHHHceEc
Confidence 89999999999999887764 455789999997 56553
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.76 E-value=0.49 Score=33.58 Aligned_cols=45 Identities=31% Similarity=0.629 Sum_probs=30.9
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCccc
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRF 258 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (342)
..+..|.||... ++-+.--.|...||..|+.+-+.... .||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345789999873 22333334889999999988654322 7999975
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.44 E-value=0.63 Score=35.75 Aligned_cols=47 Identities=30% Similarity=0.615 Sum_probs=32.6
Q ss_pred ccCcccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCcccc
Q 043965 210 IDKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRFQ 259 (342)
Q Consensus 210 ~~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 259 (342)
...+..|.||... ++-+..-.|.-.||..|+.+-|.... .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999864 32333334889999999988764433 69999764
No 82
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.43 E-value=0.33 Score=34.57 Aligned_cols=47 Identities=26% Similarity=0.480 Sum_probs=31.2
Q ss_pred CcccccccccccccCCceeE-ecccccccccchHHHhh-----cCCCCCCccc
Q 043965 212 KNLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPWLE-----VRSSCPVCRF 258 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~-----~~~~CP~CR~ 258 (342)
+...|+||...+..+...+. -.|...||..|+.--.. ..-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 45679999988753332222 24899999999853221 3347999975
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=83.10 E-value=0.59 Score=33.15 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=31.0
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCccccc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRFQV 260 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l 260 (342)
.+..|.||.+. ++.+.--.|...||..|+.+-|.... .||.|+...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 35679999863 22333334889999999987654322 699997643
No 84
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=82.62 E-value=0.56 Score=31.66 Aligned_cols=33 Identities=27% Similarity=0.696 Sum_probs=20.9
Q ss_pred CCceeeeccCceeecC-C--CCCccCCCCCCCceec
Q 043965 5 MVGYWCYICSQMVNPR-M--EAGIKCPFCESGIVEQ 37 (342)
Q Consensus 5 ~~~ywCh~C~~~V~p~-~--~~e~~CP~C~sGFvEE 37 (342)
|+.|=|-.|-+++.-. + -.+++||+|+=--|.-
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEEC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEEEEE
Confidence 3458999999998532 1 1489999998655543
No 85
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=82.24 E-value=0.52 Score=39.19 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=24.6
Q ss_pred CceeeeccCceeecCC----------CC----------CccCCCCCCCceeccc
Q 043965 6 VGYWCYICSQMVNPRM----------EA----------GIKCPFCESGIVEQMS 39 (342)
Q Consensus 6 ~~ywCh~C~~~V~p~~----------~~----------e~~CP~C~sGFvEE~~ 39 (342)
+.+||..|...+.... .. ..+||.|++.-++-+.
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~ 122 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVK 122 (139)
T ss_dssp CEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEE
T ss_pred CcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEec
Confidence 3499999999886432 02 5789999998776433
No 86
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=81.70 E-value=0.77 Score=33.05 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=24.1
Q ss_pred eeeeccCceeecCCCCCccCCCCCCCce
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCESGIV 35 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~sGFv 35 (342)
|-|-.|..+|.......|.||+|+.-.+
T Consensus 22 Y~C~~Cg~~~~l~~~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 22 YLCADCGARNTIQAKEVIRCRECGHRVM 49 (63)
T ss_dssp CBCSSSCCBCCCCSSSCCCCSSSCCCCC
T ss_pred EECCCCCCeeecCCCCceECCCCCcEEE
Confidence 9999999999876666799999998654
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.79 E-value=0.51 Score=31.96 Aligned_cols=44 Identities=30% Similarity=0.540 Sum_probs=28.3
Q ss_pred cccccccccccCCceeEecccccccccchHHHhhcCC----CCCCccc
Q 043965 215 QCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRF 258 (342)
Q Consensus 215 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (342)
.|.||...-..++-+.--.|...||..|+.+=|.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888986533222233334889999999976554322 6999964
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.23 E-value=0.34 Score=33.71 Aligned_cols=44 Identities=27% Similarity=0.594 Sum_probs=29.9
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCccc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRF 258 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (342)
.+..|.||... ++.+.--.|...||..|+.+-|.... .||.|..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45679999874 32333334899999999987654322 5888854
No 89
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.68 E-value=0.49 Score=34.77 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=32.4
Q ss_pred cccccccccccccCCceeE-ecccccccccchHHHhhc----CCCCCCcccccCC
Q 043965 213 NLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPWLEV----RSSCPVCRFQVPS 262 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~----~~~CP~CR~~l~~ 262 (342)
...|.||..... +...+. -.|...||..|+..-+.. .-.||.|+..+..
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 356999987653 222222 238999999999765432 3379999887643
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.63 E-value=0.7 Score=39.88 Aligned_cols=45 Identities=31% Similarity=0.505 Sum_probs=31.5
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCccccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRFQV 260 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l 260 (342)
+..|.||... ++-+..-.|...||..|+.+-|.... .||.|+..-
T Consensus 4 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4679999854 33333334899999999988765432 699998644
No 91
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.00 E-value=1 Score=34.71 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=32.2
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCcccc
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRFQ 259 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 259 (342)
.+...|.||...-..+..+..-.|...||..|+.+-|.... .||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34567999987643222222224899999999986554322 69999764
No 92
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=75.54 E-value=1.3 Score=38.58 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=32.9
Q ss_pred ccccccccccccCCc---eeEe-cccccccccchHH------Hhh-----cCCCCCCcccccC
Q 043965 214 LQCAVCLEEFEIGNE---AKEM-PCKHKFHGECIMP------WLE-----VRSSCPVCRFQVP 261 (342)
Q Consensus 214 ~~C~ICle~~~~~~~---~~~l-pC~H~Fh~~Ci~~------Wl~-----~~~~CP~CR~~l~ 261 (342)
..|+||...+..++. .+.- .|...||..|+.- -+. ..-.||.|+..-+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 459999999886652 3333 3999999999832 111 1568999987543
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.13 E-value=0.4 Score=33.82 Aligned_cols=46 Identities=28% Similarity=0.579 Sum_probs=31.5
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCcccccC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRFQVP 261 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l~ 261 (342)
+..|.||... ++-+.--.|...||..|+.+-|.... .||.|.....
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 4679999874 33333334899999999987654322 6999976543
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.72 E-value=1.3 Score=34.39 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=28.6
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhc---CCCCCCccc
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV---RSSCPVCRF 258 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~---~~~CP~CR~ 258 (342)
..| ||......+.-+..-.|...||..|+..-+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 88776554433333349999999999653322 237999963
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=74.48 E-value=1.1 Score=32.07 Aligned_cols=44 Identities=30% Similarity=0.565 Sum_probs=30.5
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCccc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRF 258 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (342)
.+..|.||.+. ++-+..-.|...||..|+.+-|.... .||.|..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 45679999864 22333334889999999987654322 6999965
No 96
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=72.91 E-value=2.1 Score=31.36 Aligned_cols=25 Identities=24% Similarity=0.619 Sum_probs=21.6
Q ss_pred eeeeccCceeecCCCCCccCCCCCC
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCES 32 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~s 32 (342)
|=|-.|...+.....+.+.||.|+.
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCc
Confidence 9999999998766555689999998
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.82 E-value=1.4 Score=34.69 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=30.2
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhc----CCCCCCcc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV----RSSCPVCR 257 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~----~~~CP~CR 257 (342)
++..|.||.+.-...+.+.--.|...||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46689999876432222444459999999999877642 12577664
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.28 E-value=0.85 Score=32.52 Aligned_cols=50 Identities=22% Similarity=0.543 Sum_probs=32.2
Q ss_pred Cccccccccccccc--CCceeEecccccccccchHHHhhc-------CCCCCCcccccC
Q 043965 212 KNLQCAVCLEEFEI--GNEAKEMPCKHKFHGECIMPWLEV-------RSSCPVCRFQVP 261 (342)
Q Consensus 212 ~~~~C~ICle~~~~--~~~~~~lpC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~l~ 261 (342)
++..|.||...... +..+.--.|...||..|+.+-|.. .-.|+.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 45679999976432 222222348999999999875421 227999976443
No 99
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.85 E-value=1.7 Score=41.91 Aligned_cols=51 Identities=22% Similarity=0.523 Sum_probs=33.8
Q ss_pred cccccccccccccCCceeEecccccccccc--hHHHhhcCC--CCCCcccccCCCCc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGEC--IMPWLEVRS--SCPVCRFQVPSDDF 265 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~C--i~~Wl~~~~--~CP~CR~~l~~~~~ 265 (342)
.+.|+|-+..+. ..++...|.|.-|.+- +........ .||+|.+.+..+++
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 468999888877 3566667999855443 333323333 79999998866554
No 100
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=70.52 E-value=1.3 Score=38.84 Aligned_cols=45 Identities=31% Similarity=0.482 Sum_probs=30.7
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCccccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRFQV 260 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l 260 (342)
+..|.||... ++-+..-.|...||..|+.+.|.... .||.|+..-
T Consensus 7 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4679999754 22222223889999999988765432 799998643
No 101
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=69.62 E-value=4.6 Score=27.38 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=27.1
Q ss_pred cccccccccccCCceeE-e-cccccccccchHHH----hhcCCCCCCcc
Q 043965 215 QCAVCLEEFEIGNEAKE-M-PCKHKFHGECIMPW----LEVRSSCPVCR 257 (342)
Q Consensus 215 ~C~ICle~~~~~~~~~~-l-pC~H~Fh~~Ci~~W----l~~~~~CP~CR 257 (342)
.|.||...+..+...+. - .|...||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47789888753333322 2 48889999998421 13455899885
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.61 E-value=0.89 Score=34.30 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=27.5
Q ss_pred CcccccccccccccCCceeEec--ccccccccchHHHhhc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMP--CKHKFHGECIMPWLEV 249 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lp--C~H~Fh~~Ci~~Wl~~ 249 (342)
..+.|.+|.+.++.. ..+..| =.|.||..|-...++.
T Consensus 14 a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 356899999999832 333444 4799999999888864
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.33 E-value=1.9 Score=34.17 Aligned_cols=45 Identities=27% Similarity=0.526 Sum_probs=28.9
Q ss_pred ccccccccccccCCceeE-ecccccccccchHHHhhcCC----CCCCccc
Q 043965 214 LQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPWLEVRS----SCPVCRF 258 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (342)
..|.||...-...+.... -.|...||..|+.+-|.... .||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 368889864222222222 23899999999987664332 6999974
No 104
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.15 E-value=4.2 Score=30.01 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=28.8
Q ss_pred ccccccccccccCCcee-EecccccccccchHHHhh-----cCCCCCCccccc
Q 043965 214 LQCAVCLEEFEIGNEAK-EMPCKHKFHGECIMPWLE-----VRSSCPVCRFQV 260 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~-~lpC~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~l 260 (342)
..| ||...+..+...+ .-.|...||..|+.--.. ..-.||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 446 8988764222222 234899999999842211 334899998754
No 105
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=68.13 E-value=2.1 Score=41.12 Aligned_cols=53 Identities=17% Similarity=0.380 Sum_probs=34.8
Q ss_pred cccccccccccccCCceeEeccccccccc--chHHHhhcCC--CCCCcccccCCCCccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGE--CIMPWLEVRS--SCPVCRFQVPSDDFKI 267 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~--Ci~~Wl~~~~--~CP~CR~~l~~~~~~~ 267 (342)
.+.|+|-+..+. ..++...|.|.-|.+ -+........ .||+|.+.+..+++.+
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 467999888877 356666799984433 3333333333 7999999887665543
No 106
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=66.65 E-value=0.99 Score=34.49 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=33.3
Q ss_pred ccCcccccccccccc-cCCceeEe-cccccccccchHHHhhc--CCCCCCcccccCCC
Q 043965 210 IDKNLQCAVCLEEFE-IGNEAKEM-PCKHKFHGECIMPWLEV--RSSCPVCRFQVPSD 263 (342)
Q Consensus 210 ~~~~~~C~ICle~~~-~~~~~~~l-pC~H~Fh~~Ci~~Wl~~--~~~CP~CR~~l~~~ 263 (342)
..++..|.||...-. ..+..+.- .|.-.||..|+..-+.- .-.||.|.......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 445678999987531 11122222 38889999999764322 22699997765444
No 107
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=65.45 E-value=2.9 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=23.0
Q ss_pred eeeeccCceeecCC-CCCccCCCCCCCceeccc
Q 043965 8 YWCYICSQMVNPRM-EAGIKCPFCESGIVEQMS 39 (342)
Q Consensus 8 ywCh~C~~~V~p~~-~~e~~CP~C~sGFvEE~~ 39 (342)
+||-.|+..|.... ...++||.|+.-|.=.-.
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~ 58 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCPQCHQTFCVRCK 58 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECTTTCCEECSSSC
T ss_pred eECcCCCchheecCCCCceEeCCCCCccccccC
Confidence 79999999774322 235889999998875443
No 108
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=65.13 E-value=1.6 Score=32.51 Aligned_cols=44 Identities=27% Similarity=0.503 Sum_probs=25.9
Q ss_pred cccccccccccCCceeEecccccccccchHHHhhcC-----CCCCCccc
Q 043965 215 QCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVR-----SSCPVCRF 258 (342)
Q Consensus 215 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-----~~CP~CR~ 258 (342)
.|.||...-..+..+.--.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466776543211111112388999999998766432 26888875
No 109
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.16 E-value=2.8 Score=31.87 Aligned_cols=52 Identities=27% Similarity=0.514 Sum_probs=34.0
Q ss_pred Cccccccccccccc-CCceeEe-cccccccccchHHHhhc--------CCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEI-GNEAKEM-PCKHKFHGECIMPWLEV--------RSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~-~~~~~~l-pC~H~Fh~~Ci~~Wl~~--------~~~CP~CR~~l~~~ 263 (342)
.+..|.||...-.. ....+.- .|...||..|+.+-|.. .=.|+.|+......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 35679999876321 1222232 38999999999876642 12799998766433
No 110
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=63.04 E-value=4 Score=32.25 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=24.1
Q ss_pred eeeeccCceeecCCCCCccCCCCCCCceec
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQ 37 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~sGFvEE 37 (342)
|-|-.|--...-.+..-.+||.|.|..||+
T Consensus 68 ~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 68 AQCRKCGFVFKAEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CBBTTTCCBCCCCSSCCSSCSSSCCCCBCC
T ss_pred cChhhCcCeecccCCCCCCCcCCCCCccCC
Confidence 889999888733444568999999999987
No 111
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.84 E-value=4.9 Score=30.87 Aligned_cols=44 Identities=25% Similarity=0.489 Sum_probs=26.6
Q ss_pred cccccccccccccCCceeEec--cc-ccccccchHHHhhc----CCCCCCccccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMP--CK-HKFHGECIMPWLEV----RSSCPVCRFQV 260 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lp--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~~l 260 (342)
...| ||..... +.-+..=. |. ..||..|+. |.. +-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 4557 9988643 32222223 55 689999996 322 23799997643
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=62.43 E-value=2.4 Score=36.86 Aligned_cols=43 Identities=30% Similarity=0.666 Sum_probs=30.1
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCcccc
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRFQ 259 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 259 (342)
..|.+|.+. ++.+..-.|...||..|+.+-+.... .||.|+..
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 469999854 33333445889999999987654322 69999765
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.86 E-value=2.6 Score=31.27 Aligned_cols=44 Identities=27% Similarity=0.528 Sum_probs=27.9
Q ss_pred cccccccccccCCceeEecccccccccchHHHhhc-----CCCCCCccc
Q 043965 215 QCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEV-----RSSCPVCRF 258 (342)
Q Consensus 215 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-----~~~CP~CR~ 258 (342)
.|.||...-..++.+.--.|...||..|+.+-|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68899864322222222248899999999865532 126888864
No 114
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=59.75 E-value=7.7 Score=29.18 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=21.8
Q ss_pred CCceeeeccCceeecC----------------CCCCccCCCCCC
Q 043965 5 MVGYWCYICSQMVNPR----------------MEAGIKCPFCES 32 (342)
Q Consensus 5 ~~~ywCh~C~~~V~p~----------------~~~e~~CP~C~s 32 (342)
|..|-|-.|--...+. ++++.+||.|+-
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 4459999999888763 345789999987
No 115
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=59.68 E-value=5.6 Score=28.97 Aligned_cols=45 Identities=24% Similarity=0.487 Sum_probs=26.6
Q ss_pred CcccccccccccccCCceeEec--cc-ccccccchHHHhhc----CCCCCCccccc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMP--CK-HKFHGECIMPWLEV----RSSCPVCRFQV 260 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lp--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~~l 260 (342)
+...| ||..... +.-+..=. |. ..||..|+. |.. +-.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8987643 32111122 55 689999996 322 22799997643
No 116
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.59 E-value=2.8 Score=30.51 Aligned_cols=43 Identities=28% Similarity=0.549 Sum_probs=26.3
Q ss_pred cccccccccccCCceeEe-cccccccccchHHHhhc-----CCCCCCccc
Q 043965 215 QCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPWLEV-----RSSCPVCRF 258 (342)
Q Consensus 215 ~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~-----~~~CP~CR~ 258 (342)
.|.||...-..+ ....- .|...||..|+.+-|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777532211 22222 38899999999865543 226998864
No 117
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=58.39 E-value=5.4 Score=32.78 Aligned_cols=36 Identities=31% Similarity=0.636 Sum_probs=26.0
Q ss_pred CCCc-eeeeccCceeecCCCC-----CccCCCCCCCceeccccC
Q 043965 4 AMVG-YWCYICSQMVNPRMEA-----GIKCPFCESGIVEQMSSS 41 (342)
Q Consensus 4 ~~~~-ywCh~C~~~V~p~~~~-----e~~CP~C~sGFvEE~~~~ 41 (342)
+|++ -||-.|.-+..|..+. -++|+.|+ |+|+++..
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCg--Y~~~~~~~ 61 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCS--YVEEAGSP 61 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSC--CBCCCSCS
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCC--CcEEcCCc
Confidence 4555 8999999999877542 38999994 77777643
No 118
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=54.00 E-value=9.4 Score=29.08 Aligned_cols=28 Identities=18% Similarity=0.622 Sum_probs=21.6
Q ss_pred CCceeeeccCceeecC----------------CCCCccCCCCCC
Q 043965 5 MVGYWCYICSQMVNPR----------------MEAGIKCPFCES 32 (342)
Q Consensus 5 ~~~ywCh~C~~~V~p~----------------~~~e~~CP~C~s 32 (342)
|..|-|-.|--...+. ++++.+||.|+-
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 4449999999877763 345789999987
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=52.76 E-value=4.3 Score=36.43 Aligned_cols=44 Identities=27% Similarity=0.503 Sum_probs=25.4
Q ss_pred cccccccccccCCceeEecccccccccchHHHhhcC-----CCCCCccc
Q 043965 215 QCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVR-----SSCPVCRF 258 (342)
Q Consensus 215 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-----~~CP~CR~ 258 (342)
.|.||...-..+.-+..-.|...||..|+.+-|... =.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887642222222223489999999998765432 26999964
No 120
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.15 E-value=1.7 Score=34.62 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=30.9
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCC----CCCCcccccC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRFQVP 261 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l~ 261 (342)
..|.||...-..+..+.--.|...||..|+.+-|.... .||.|+..+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 35888877543232333334899999999987554322 5999876543
No 121
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=51.52 E-value=2.7 Score=30.74 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=29.7
Q ss_pred cCccccccccccc-ccCCceeEe-cccccccccchHHHhhc--CCCCCCccc
Q 043965 211 DKNLQCAVCLEEF-EIGNEAKEM-PCKHKFHGECIMPWLEV--RSSCPVCRF 258 (342)
Q Consensus 211 ~~~~~C~ICle~~-~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~--~~~CP~CR~ 258 (342)
..+..|.||.+.- ...+..+.- .|.-.||..|+..-..- .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3467799998753 112222222 48899999999754321 126888865
No 122
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=51.07 E-value=7.2 Score=30.53 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=31.5
Q ss_pred ccccccccccccCCceeEe--cccccccccchHHH---hh-------cCCCCCCccccc
Q 043965 214 LQCAVCLEEFEIGNEAKEM--PCKHKFHGECIMPW---LE-------VRSSCPVCRFQV 260 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~l--pC~H~Fh~~Ci~~W---l~-------~~~~CP~CR~~l 260 (342)
..|.||...+......+.- .|...||..|+.-- ++ .+-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4699999987544343333 48899999998321 11 234799998743
No 123
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.03 E-value=13 Score=32.67 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=25.2
Q ss_pred CcccccccccccccCCceeEe-cccccccccchHHH
Q 043965 212 KNLQCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPW 246 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~W 246 (342)
++..|.+|...|..-..-..- .||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 457899999999743322233 49999999997654
No 124
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=50.88 E-value=9 Score=28.66 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=23.2
Q ss_pred eeeeccCceeecCCCCCccCCCCCCCceeccc
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQMS 39 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~sGFvEE~~ 39 (342)
+.||.|-.... .+ .-..||.|+..=+.-+.
T Consensus 16 LrC~aCf~~t~-~~-~k~FCp~CGn~TL~Rvs 45 (79)
T 2con_A 16 LRCHGCFKTTS-DM-NRVFCGHCGNKTLKKVS 45 (79)
T ss_dssp EECSSSCCEES-CS-SCCSCSSSCCSCCEEEE
T ss_pred eEecccceECC-Cc-ccccccccCcccceEEE
Confidence 89999999874 33 36899999997666654
No 125
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.65 E-value=22 Score=27.19 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=35.0
Q ss_pred cccccccccccccCCc----eeEecccccccccchHH-HhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNE----AKEMPCKHKFHGECIMP-WLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~----~~~lpC~H~Fh~~Ci~~-Wl~~~~~CP~CR~~l~~~ 263 (342)
...|.||-+.+-.... +...-|+--.|+.|..- .-+....||-|+..+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 4579999999753321 22233777889999854 335667999999887643
No 126
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=50.02 E-value=9.4 Score=28.36 Aligned_cols=35 Identities=26% Similarity=0.547 Sum_probs=24.6
Q ss_pred CcccccccccccccCCceeE-ecccccccccchHHH
Q 043965 212 KNLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPW 246 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~W 246 (342)
+...|.+|...|..-..-.. -.||.+||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34579999999974322222 349999999998654
No 127
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.69 E-value=2.9 Score=30.65 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=28.7
Q ss_pred ccccccccccccCCceeEecccccccccchHHHh---------hcCCCCCCcccc
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL---------EVRSSCPVCRFQ 259 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl---------~~~~~CP~CR~~ 259 (342)
..| ||......+.-+..-.|...||..|+.--. ..+-.||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 898876522222233489999999984211 245689999764
No 128
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=49.41 E-value=12 Score=29.38 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=21.5
Q ss_pred Ccccccccccccc------cCCceeEecccccccccchH
Q 043965 212 KNLQCAVCLEEFE------IGNEAKEMPCKHKFHGECIM 244 (342)
Q Consensus 212 ~~~~C~ICle~~~------~~~~~~~lpC~H~Fh~~Ci~ 244 (342)
....|.+|+..-. .++-+.-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4567999987531 11223333499999999995
No 129
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=49.17 E-value=3.5 Score=34.85 Aligned_cols=47 Identities=21% Similarity=0.482 Sum_probs=30.0
Q ss_pred CcccccccccccccCCceeEe-cccccccccchHHHh-----hcCCCCCCcccc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPWL-----EVRSSCPVCRFQ 259 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl-----~~~~~CP~CR~~ 259 (342)
+...| ||......+...+.- .|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 998876433223332 489999999984221 123479999864
No 130
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=48.76 E-value=3.2 Score=32.56 Aligned_cols=44 Identities=23% Similarity=0.510 Sum_probs=27.3
Q ss_pred cccccccccccCCceeEecccccccccchHHHhhcCC----CCCCccc
Q 043965 215 QCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRF 258 (342)
Q Consensus 215 ~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (342)
.|.||...-.....+.--.|...||..|+.+-|.... .||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 5778876533211222223889999999987554322 6888855
No 131
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.25 E-value=3.7 Score=29.77 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=28.9
Q ss_pred cccccccccccccCCcee-EecccccccccchHHHh----hcCCCCCCcccc
Q 043965 213 NLQCAVCLEEFEIGNEAK-EMPCKHKFHGECIMPWL----EVRSSCPVCRFQ 259 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~-~lpC~H~Fh~~Ci~~Wl----~~~~~CP~CR~~ 259 (342)
...| ||......+...+ .-.|...||..|+.--. ..+-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3568 7987754433222 23489999999985321 233479999763
No 132
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=48.14 E-value=11 Score=28.57 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=31.9
Q ss_pred CcccccccccccccCCceeE-ecccccccccchHHHhhc------CCCCCCccccc
Q 043965 212 KNLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPWLEV------RSSCPVCRFQV 260 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~l 260 (342)
+...|.+|...|..-..... -.||++||..|...+... ...|-.|-..|
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34579999999974332223 349999999998765421 12566665544
No 133
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=48.10 E-value=8.1 Score=27.60 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=22.6
Q ss_pred cccccccccccccCCceeEe--cccccccccch
Q 043965 213 NLQCAVCLEEFEIGNEAKEM--PCKHKFHGECI 243 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~l--pC~H~Fh~~Ci 243 (342)
...|.+|...+..+...+.- .|.-.||..|+
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 45799999987654433333 58899999997
No 134
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=48.03 E-value=12 Score=25.87 Aligned_cols=29 Identities=31% Similarity=0.873 Sum_probs=21.1
Q ss_pred CCceeeeccCceeecC----------------CCCCccCCCCCCC
Q 043965 5 MVGYWCYICSQMVNPR----------------MEAGIKCPFCESG 33 (342)
Q Consensus 5 ~~~ywCh~C~~~V~p~----------------~~~e~~CP~C~sG 33 (342)
|..|=|-.|-=...|. ++.+.+||.|+-+
T Consensus 1 m~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CCCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred CCceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 3458888998776663 3456799999874
No 135
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=47.53 E-value=9.4 Score=30.24 Aligned_cols=31 Identities=26% Similarity=0.709 Sum_probs=24.2
Q ss_pred eeeeccCceeecCCCC-----CccCCCCCCCceecccc
Q 043965 8 YWCYICSQMVNPRMEA-----GIKCPFCESGIVEQMSS 40 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~-----e~~CP~C~sGFvEE~~~ 40 (342)
-||-.|.-+..|..+. -++|+.|+ +++++++
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~--y~~~~~~ 40 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCD--YSEIAAT 40 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSC--CEECCSC
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCC--CeEEcCC
Confidence 7999999999877542 38899995 7777764
No 136
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=47.05 E-value=14 Score=24.72 Aligned_cols=29 Identities=28% Similarity=0.727 Sum_probs=21.4
Q ss_pred CCceeeeccCceeecC---------CCCCccCCCCCCC
Q 043965 5 MVGYWCYICSQMVNPR---------MEAGIKCPFCESG 33 (342)
Q Consensus 5 ~~~ywCh~C~~~V~p~---------~~~e~~CP~C~sG 33 (342)
|..|=|-.|--...+. ++.+.+||.|+.+
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 5568898998777653 3456899999864
No 137
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.97 E-value=5.9 Score=27.96 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=28.1
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCc
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVC 256 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~C 256 (342)
..|-.|...|.......--.|++.||.+|=.=--+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999998622112233499999999954333344479987
No 138
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=46.50 E-value=7.2 Score=29.14 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=25.1
Q ss_pred CcccccccccccccCCceeE-ecccccccccchHHH
Q 043965 212 KNLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPW 246 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~W 246 (342)
+...|.+|...|..-..-.. -.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34679999999974332222 349999999997654
No 139
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.50 E-value=11 Score=30.33 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=24.3
Q ss_pred cccccccccccccCCceeEe-cccccccccchHHH
Q 043965 213 NLQCAVCLEEFEIGNEAKEM-PCKHKFHGECIMPW 246 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~l-pC~H~Fh~~Ci~~W 246 (342)
...|.+|...|..-..-..- .||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45799999999743322233 49999999997554
No 140
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.88 E-value=14 Score=26.89 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=29.6
Q ss_pred cCcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
.....|..|-+.+..++.+.. -+..||..|. .|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 345679999998875543333 4778888875 6889988875
No 141
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=45.78 E-value=4.8 Score=29.03 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=27.5
Q ss_pred cccccccccccccCCceeEecccccccccchHHHh---hcCCCCCCccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL---EVRSSCPVCRF 258 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl---~~~~~CP~CR~ 258 (342)
...| ||......+.-+..-.|...||..|+.--. ...-.||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4568 998765521122223489999999985322 12337888864
No 142
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=45.39 E-value=3.4 Score=33.46 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=30.8
Q ss_pred cccccccccccccCCcee-EecccccccccchHHHhhcCCCCCCccccc
Q 043965 213 NLQCAVCLEEFEIGNEAK-EMPCKHKFHGECIMPWLEVRSSCPVCRFQV 260 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~-~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l 260 (342)
...|.+|...|..-..-. .-.||.+||..|..........|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 357999999987422222 234999999999877666566788885543
No 143
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=45.30 E-value=9.9 Score=27.69 Aligned_cols=19 Identities=32% Similarity=0.829 Sum_probs=15.1
Q ss_pred eeeccCceeecCCCCCccCCCCCC
Q 043965 9 WCYICSQMVNPRMEAGIKCPFCES 32 (342)
Q Consensus 9 wCh~C~~~V~p~~~~e~~CP~C~s 32 (342)
=|-.|++.| .+-.||.|++
T Consensus 13 AC~~C~~~~-----~~~~CPnC~s 31 (69)
T 1ryq_A 13 ACRHCHYIT-----SEDRCPVCGS 31 (69)
T ss_dssp EETTTCBEE-----SSSSCTTTCC
T ss_pred hHHhCCccc-----cCCcCCCccC
Confidence 488899955 3678999985
No 144
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=44.86 E-value=10 Score=28.23 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=24.1
Q ss_pred ceeeeccCceeecCCCCCc--cCCCCCCCceecccc
Q 043965 7 GYWCYICSQMVNPRMEAGI--KCPFCESGIVEQMSS 40 (342)
Q Consensus 7 ~ywCh~C~~~V~p~~~~e~--~CP~C~sGFvEE~~~ 40 (342)
.-+|..|...-... ..-+ +||.|+|-=...+..
T Consensus 37 ~I~CnDC~~~s~v~-~h~lg~kC~~C~SyNTr~~~G 71 (79)
T 2k2d_A 37 DILCNDCNGRSTVQ-FHILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp EEEESSSCCEEEEE-CCTTCCCCTTTSCCCEEESCC
T ss_pred EEECCCCCCCccCC-ceeecccCcCCCCcCeEecCC
Confidence 37999999987533 2345 999999976666653
No 145
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=44.57 E-value=5.1 Score=29.55 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=29.0
Q ss_pred cccccccccccccCCceeEe--cccccccccchHHHh---------hcCCCCCCcccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEM--PCKHKFHGECIMPWL---------EVRSSCPVCRFQ 259 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~l--pC~H~Fh~~Ci~~Wl---------~~~~~CP~CR~~ 259 (342)
...| ||......+.-+..= .|...||..|+.--- ..+-.||.|+..
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 4567 898874433223333 589999999984211 124479999764
No 146
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.72 E-value=18 Score=25.00 Aligned_cols=28 Identities=25% Similarity=0.634 Sum_probs=21.0
Q ss_pred CCceeeeccCceeecC----------------CCCCccCCCCCC
Q 043965 5 MVGYWCYICSQMVNPR----------------MEAGIKCPFCES 32 (342)
Q Consensus 5 ~~~ywCh~C~~~V~p~----------------~~~e~~CP~C~s 32 (342)
|..|-|-.|--...+. ++.+.+||.|+-
T Consensus 1 m~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred CCcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 3458888898777763 455789999987
No 147
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.52 E-value=7.4 Score=27.37 Aligned_cols=36 Identities=28% Similarity=0.619 Sum_probs=24.9
Q ss_pred ccccccccccccCCceeEe---c--ccccccccchHHHhhc
Q 043965 214 LQCAVCLEEFEIGNEAKEM---P--CKHKFHGECIMPWLEV 249 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~l---p--C~H~Fh~~Ci~~Wl~~ 249 (342)
..|+-|.-.++..+.-..| . |++.||..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4688888887754432222 2 7889999999888644
No 148
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.05 E-value=15 Score=26.17 Aligned_cols=41 Identities=15% Similarity=0.447 Sum_probs=29.7
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
...|..|-+.+..++.+ ..-+..||..|. .|-.|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCCC
Confidence 35699999988755433 345778888875 588998888644
No 149
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=42.70 E-value=11 Score=26.90 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=4.3
Q ss_pred ccccccccc
Q 043965 216 CAVCLEEFE 224 (342)
Q Consensus 216 C~ICle~~~ 224 (342)
|..|.+.+.
T Consensus 3 C~~C~~~I~ 11 (76)
T 1iml_A 3 CPKCDKEVY 11 (76)
T ss_dssp CTTTSSBCC
T ss_pred CCCCCCEEE
Confidence 445555443
No 150
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.51 E-value=17 Score=26.80 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=28.8
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
...|..|-..+. + ..+..-+..||..|. .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~-~--~~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR-G--PFLVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC-S--CEEEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEec-c--eEEEECCccccccCC--------ccCCCCCCCCCC
Confidence 356999999885 2 233446788998875 688998888654
No 151
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=42.44 E-value=18 Score=24.70 Aligned_cols=27 Identities=26% Similarity=0.661 Sum_probs=19.1
Q ss_pred CceeeeccCceeecCC----------------CCCccCCCCCC
Q 043965 6 VGYWCYICSQMVNPRM----------------EAGIKCPFCES 32 (342)
Q Consensus 6 ~~ywCh~C~~~V~p~~----------------~~e~~CP~C~s 32 (342)
..|-|-.|--...+.. +++.+||.|+-
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp CCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCC
T ss_pred CcEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCC
Confidence 4577888877666543 45678999986
No 152
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=42.31 E-value=5.8 Score=27.73 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=25.1
Q ss_pred CcccccccccccccCCceeEec--cc-ccccccchHHHhhc----CCCCCCccc
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMP--CK-HKFHGECIMPWLEV----RSSCPVCRF 258 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lp--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~ 258 (342)
+...| ||..... +.-+.-=. |. ..||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34457 8987642 22111123 55 689999996 322 226998864
No 153
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=41.86 E-value=3.9 Score=29.38 Aligned_cols=43 Identities=21% Similarity=0.476 Sum_probs=25.6
Q ss_pred ccccccccccccCCceeEe---cccccccccchHHH---hh-----cCCCCCCccc
Q 043965 214 LQCAVCLEEFEIGNEAKEM---PCKHKFHGECIMPW---LE-----VRSSCPVCRF 258 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~l---pC~H~Fh~~Ci~~W---l~-----~~~~CP~CR~ 258 (342)
..| ||......+. .+.- .|...||..|+.-- .. .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 7976554332 2333 38889999998311 01 1347999974
No 154
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=41.74 E-value=5.9 Score=27.76 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=24.0
Q ss_pred cccccccccccccCCceeEec--cc-ccccccchHHHhhc----CCCCCCccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMP--CK-HKFHGECIMPWLEV----RSSCPVCRF 258 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lp--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~ 258 (342)
...| ||..... +.-+.-=. |. ..||..|+. |.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 8987632 21111112 44 679999996 332 226998864
No 155
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.55 E-value=15 Score=27.30 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=23.1
Q ss_pred cccccccccccccCCceeE-ecccccccccchHH
Q 043965 213 NLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMP 245 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~ 245 (342)
...|.+|...|..-..--. -.||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4579999999974322222 34999999999654
No 156
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.96 E-value=11 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=21.6
Q ss_pred ccccccccccc----cC---CceeEecccccccccchHHH
Q 043965 214 LQCAVCLEEFE----IG---NEAKEMPCKHKFHGECIMPW 246 (342)
Q Consensus 214 ~~C~ICle~~~----~~---~~~~~lpC~H~Fh~~Ci~~W 246 (342)
..|.||+..-. .+ +-+.-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 35999987542 11 22333348999999999754
No 157
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.86 E-value=16 Score=27.65 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=32.5
Q ss_pred cccccccccccccCCceeE-ecccccccccchHHHhh-------cCCCCCCcccccCC
Q 043965 213 NLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPWLE-------VRSSCPVCRFQVPS 262 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~-------~~~~CP~CR~~l~~ 262 (342)
...|.+|...|..-..--. -.||++||..|....+. ....|-.|...|..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 4579999999974332222 34999999999865431 12257777665543
No 158
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=40.66 E-value=13 Score=30.84 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=29.5
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhh---------c--CCCCCCccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLE---------V--RSSCPVCRF 258 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---------~--~~~CP~CR~ 258 (342)
+..|.||.+-=+ -.-.-.|-..||..||.+-|. . .=.||+|+.
T Consensus 63 ~d~C~vC~~GG~---LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSS---EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCc---EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 567999986422 232234899999999997663 1 117999974
No 159
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=40.15 E-value=16 Score=26.46 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=23.7
Q ss_pred cccccccccccccCCceeE-ecccccccccchHHH
Q 043965 213 NLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPW 246 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~W 246 (342)
+..|.+|...|..-..... -.||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 3579999999974322222 349999999997543
No 160
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.12 E-value=24 Score=25.68 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=30.5
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDD 264 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~ 264 (342)
....|..|...+...+.+. .-+..||..|. .|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 3467999999886443332 35778998885 5888988886554
No 161
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.07 E-value=12 Score=19.99 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=9.6
Q ss_pred ccCCCCCCCcee
Q 043965 25 IKCPFCESGIVE 36 (342)
Q Consensus 25 ~~CP~C~sGFvE 36 (342)
++|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 679999988853
No 162
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.30 E-value=21 Score=26.27 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=29.0
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
...|..|.+.+.. ..+..-+..||..|. .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc---cEEEECCceECccCC--------EecCCCCCCCCC
Confidence 4579999998873 233446788998885 688998888654
No 163
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=38.00 E-value=8.1 Score=30.16 Aligned_cols=12 Identities=25% Similarity=0.864 Sum_probs=10.6
Q ss_pred cccccchHHHhh
Q 043965 237 KFHGECIMPWLE 248 (342)
Q Consensus 237 ~Fh~~Ci~~Wl~ 248 (342)
-||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 164
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=37.93 E-value=8.2 Score=30.10 Aligned_cols=12 Identities=33% Similarity=0.980 Sum_probs=10.4
Q ss_pred cccccchHHHhh
Q 043965 237 KFHGECIMPWLE 248 (342)
Q Consensus 237 ~Fh~~Ci~~Wl~ 248 (342)
-||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 165
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.82 E-value=26 Score=24.23 Aligned_cols=39 Identities=23% Similarity=0.557 Sum_probs=27.5
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|...+.. + .+..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITT-G--GVTYREQPWHKECF--------VCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCS-S--EEESSSSEEETTTS--------BCSSSCCBCTTS
T ss_pred CCCcccCCeecc-c--eEEECccccCCCCC--------ccCCCCCcCCcC
Confidence 469999988862 2 23446788888775 588898888543
No 166
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.06 E-value=13 Score=26.77 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=22.7
Q ss_pred CcccccccccccccCCceeEecc-cccccccchHH
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPC-KHKFHGECIMP 245 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC-~H~Fh~~Ci~~ 245 (342)
+..-|.||.++ . ..+.+-| +-+||..|...
T Consensus 7 e~pWC~ICneD-A---tlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED-A---TLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC-C---CEEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCC-C---eEEecCCCCceehHHHHHH
Confidence 34569999988 2 5677778 88999999655
No 167
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=37.02 E-value=26 Score=27.50 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=29.2
Q ss_pred cCcccccccccccccCCceeEe---cccccccccchHHHhhcCC----CCCCcccccCCC
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEM---PCKHKFHGECIMPWLEVRS----SCPVCRFQVPSD 263 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~l---pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~l~~~ 263 (342)
..+..|.+|.+. + ..+.- .|-..||..|+. |.... .||.|+-.+..+
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 456679999842 2 33332 377899999986 43322 588776554433
No 168
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.79 E-value=7.3 Score=37.45 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=0.0
Q ss_pred cccccccccccccCCc-eeEecccccccccchHHHhhc-------CCCCCCccccc
Q 043965 213 NLQCAVCLEEFEIGNE-AKEMPCKHKFHGECIMPWLEV-------RSSCPVCRFQV 260 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~-~~~lpC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~l 260 (342)
...|.+|...|..-.. ...-.||++||..|...++.. ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4679999999873322 223349999999998765421 22577775544
No 169
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.69 E-value=16 Score=26.28 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=28.5
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPS 262 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (342)
...|..|.+.+.. . .+..-+..||..|. .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG--V-FVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS--S-CEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccC--c-EEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 4579999998873 2 34446788998885 68888887753
No 170
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.57 E-value=16 Score=32.45 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=32.0
Q ss_pred CcccccccccccccCCceeE-ecccccccccchHHHhh--------cCCCCCCccccc
Q 043965 212 KNLQCAVCLEEFEIGNEAKE-MPCKHKFHGECIMPWLE--------VRSSCPVCRFQV 260 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~--------~~~~CP~CR~~l 260 (342)
+...|.+|...|..-..... -.||++||..|...... ....|-.|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 35689999999974332223 34999999999865432 112577775554
No 171
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.80 E-value=15 Score=30.00 Aligned_cols=47 Identities=21% Similarity=0.440 Sum_probs=30.8
Q ss_pred Ccccccccccccc-cC-CceeEecccccccccchHHHhhcC--C--CCCCccc
Q 043965 212 KNLQCAVCLEEFE-IG-NEAKEMPCKHKFHGECIMPWLEVR--S--SCPVCRF 258 (342)
Q Consensus 212 ~~~~C~ICle~~~-~~-~~~~~lpC~H~Fh~~Ci~~Wl~~~--~--~CP~CR~ 258 (342)
....|.+|...|. .. ......-|+|.+|..|-..-.... . .|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4568999999993 22 244455599999999975421111 1 4888865
No 172
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=34.95 E-value=25 Score=23.90 Aligned_cols=25 Identities=24% Similarity=0.728 Sum_probs=18.8
Q ss_pred eeeeccCceeecC----------------CCCCccCCCCCC
Q 043965 8 YWCYICSQMVNPR----------------MEAGIKCPFCES 32 (342)
Q Consensus 8 ywCh~C~~~V~p~----------------~~~e~~CP~C~s 32 (342)
|-|-.|--...+. ++.+.+||.|+-
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCC
Confidence 6788887777663 456789999986
No 173
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.80 E-value=22 Score=24.67 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=27.8
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
...|..|-+.+. +. .+..-+..||..|. .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII-GR--VIKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC-SC--CEEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec-ce--EEEECcccccccCC--------EeCCCCCcCCCC
Confidence 346999988876 22 23335778888875 688888887654
No 174
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.35 E-value=32 Score=23.99 Aligned_cols=42 Identities=19% Similarity=0.481 Sum_probs=28.7
Q ss_pred cccccccccccc-CCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEI-GNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~-~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|-+.+.. ++..++..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCCCC
Confidence 469999988873 111223336788998885 688998888643
No 175
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.47 E-value=31 Score=23.95 Aligned_cols=41 Identities=17% Similarity=0.413 Sum_probs=28.0
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|.+.+...+.. +..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccCCC
Confidence 4699999888744322 2235778888775 688888877654
No 176
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=33.41 E-value=14 Score=19.79 Aligned_cols=12 Identities=17% Similarity=0.656 Sum_probs=9.7
Q ss_pred ccCCCCCCCcee
Q 043965 25 IKCPFCESGIVE 36 (342)
Q Consensus 25 ~~CP~C~sGFvE 36 (342)
++|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 679999888864
No 177
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.04 E-value=26 Score=24.01 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=28.1
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|...+. +. .+..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCCC
Confidence 46999998887 32 33446778888875 588998888643
No 178
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=32.45 E-value=17 Score=21.03 Aligned_cols=13 Identities=23% Similarity=0.777 Sum_probs=11.0
Q ss_pred CccCCCCCCCcee
Q 043965 24 GIKCPFCESGIVE 36 (342)
Q Consensus 24 e~~CP~C~sGFvE 36 (342)
.++|+.|+..|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4899999999864
No 179
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=32.07 E-value=15 Score=19.28 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=9.0
Q ss_pred ccCCCCCCCcee
Q 043965 25 IKCPFCESGIVE 36 (342)
Q Consensus 25 ~~CP~C~sGFvE 36 (342)
++|+.|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 578888887754
No 180
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.94 E-value=18 Score=26.65 Aligned_cols=26 Identities=31% Similarity=0.654 Sum_probs=21.5
Q ss_pred eeeeccCceeecCCCCCccCCCCCCCceec
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQ 37 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~sGFvEE 37 (342)
..|+.|.+.|. ++ -++| +|+.-|--.
T Consensus 26 ~RC~~C~kkvg-L~--~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 26 TRCLSCNKKVG-VT--GFKC-RCGSTFCGT 51 (74)
T ss_dssp CBCSSSCCBCT-TT--CEEC-TTSCEECTT
T ss_pred ccchhhcCccc-cc--ceEe-ccCCEeccc
Confidence 89999999996 22 6899 999999754
No 181
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=31.46 E-value=17 Score=26.34 Aligned_cols=46 Identities=26% Similarity=0.428 Sum_probs=28.0
Q ss_pred cccccccccccCCcee-EecccccccccchHHHhh-----cCCCCCCccccc
Q 043965 215 QCAVCLEEFEIGNEAK-EMPCKHKFHGECIMPWLE-----VRSSCPVCRFQV 260 (342)
Q Consensus 215 ~C~ICle~~~~~~~~~-~lpC~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~l 260 (342)
.-.||...+..+...+ .-.|.-.||..|+.---. ..-.||.|+...
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 3448887654222222 224899999999843211 234799998654
No 182
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.19 E-value=29 Score=24.07 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=28.0
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|...+...+. ++..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCCCC
Confidence 469999888774322 23335778888775 588888877654
No 183
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=31.03 E-value=19 Score=19.20 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=9.7
Q ss_pred ccCCCCCCCcee
Q 043965 25 IKCPFCESGIVE 36 (342)
Q Consensus 25 ~~CP~C~sGFvE 36 (342)
+.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 679999988864
No 184
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.80 E-value=25 Score=25.20 Aligned_cols=41 Identities=27% Similarity=0.471 Sum_probs=28.6
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
...|..|.+.+..++. +..-+..||..|. .|-.|+..|...
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCCCC
Confidence 3569999998864443 3336788888885 488888887654
No 185
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.52 E-value=29 Score=24.88 Aligned_cols=39 Identities=28% Similarity=0.721 Sum_probs=27.4
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|...+. +. .+..-+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~-~~--~v~a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GE--VVSALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SC--CEEETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cc--eEEECCceeCccCC--------ccccCCCCCCCC
Confidence 36999998877 32 23336778888775 688898887543
No 186
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.22 E-value=11 Score=19.93 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.4
Q ss_pred ccCCCCCCCceec
Q 043965 25 IKCPFCESGIVEQ 37 (342)
Q Consensus 25 ~~CP~C~sGFvEE 37 (342)
++|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 6799999888754
No 187
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.72 E-value=61 Score=23.74 Aligned_cols=42 Identities=17% Similarity=0.415 Sum_probs=30.0
Q ss_pred CcccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 212 KNLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 212 ~~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
....|..|.+.+...+. +..-+..||..|. .|-.|...|...
T Consensus 14 ~~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMER--LLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSE--EECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCcee--EEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 34679999998874433 3456788998885 588888877654
No 188
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=29.50 E-value=12 Score=25.10 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=23.7
Q ss_pred ccccccccCCceeEecccccccccchHHHh---hcCCCCCCccc
Q 043965 218 VCLEEFEIGNEAKEMPCKHKFHGECIMPWL---EVRSSCPVCRF 258 (342)
Q Consensus 218 ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl---~~~~~CP~CR~ 258 (342)
||......+.-+.--.|...||..|+.--. ..+-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 676654411222223488999999985322 23347888864
No 189
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.39 E-value=13 Score=19.80 Aligned_cols=13 Identities=15% Similarity=0.577 Sum_probs=10.0
Q ss_pred CccCCCCCCCcee
Q 043965 24 GIKCPFCESGIVE 36 (342)
Q Consensus 24 e~~CP~C~sGFvE 36 (342)
-++|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 3689999988854
No 190
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.07 E-value=18 Score=19.52 Aligned_cols=12 Identities=17% Similarity=0.692 Sum_probs=9.4
Q ss_pred ccCCCCCCCcee
Q 043965 25 IKCPFCESGIVE 36 (342)
Q Consensus 25 ~~CP~C~sGFvE 36 (342)
+.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 679999888853
No 191
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.96 E-value=41 Score=24.11 Aligned_cols=40 Identities=15% Similarity=0.428 Sum_probs=28.7
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
...|..|-..+. +.. +..-+..||..|. .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCCC--------EeCCCCCccCCC
Confidence 457999999887 222 3345778888774 688998888754
No 192
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.91 E-value=13 Score=23.24 Aligned_cols=12 Identities=17% Similarity=0.769 Sum_probs=8.8
Q ss_pred cccccccccccc
Q 043965 213 NLQCAVCLEEFE 224 (342)
Q Consensus 213 ~~~C~ICle~~~ 224 (342)
.+.|+||+..+.
T Consensus 5 GFiCP~C~~~l~ 16 (34)
T 3mjh_B 5 GFICPQCMKSLG 16 (34)
T ss_dssp EEECTTTCCEES
T ss_pred ccCCcHHHHHcC
Confidence 467888887775
No 193
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.85 E-value=41 Score=23.98 Aligned_cols=41 Identities=17% Similarity=0.532 Sum_probs=28.9
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|...+..++.+ +..-+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCCC
Confidence 4799999888754443 2335778888775 688898887654
No 194
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.33 E-value=31 Score=23.79 Aligned_cols=39 Identities=15% Similarity=0.466 Sum_probs=26.7
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|.+.+.. +. +..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (69)
T 2cur_A 6 SGCVKCNKAITS-GG--ITYQDQPWHADCF--------VCVTCSKKLAGQ 44 (69)
T ss_dssp CCCSSSCCCCCT-TC--EEETTEEECTTTT--------BCTTTCCBCTTS
T ss_pred CCCcccCCEeCc-ce--EEECccccccCcC--------EECCCCCCCCCC
Confidence 468899888762 22 3335778888775 588888887643
No 195
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.06 E-value=33 Score=24.29 Aligned_cols=41 Identities=17% Similarity=0.409 Sum_probs=27.8
Q ss_pred cccccccccccc-CCceeEecccccccccchHHHhhcCCCCCCcccccCC
Q 043965 214 LQCAVCLEEFEI-GNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPS 262 (342)
Q Consensus 214 ~~C~ICle~~~~-~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (342)
..|..|...+.. ++...+..-+..||..|. .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCCC
Confidence 469999988773 112333346778898885 68888887753
No 196
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=27.85 E-value=22 Score=23.53 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=20.7
Q ss_pred eeeeccCc-eeecC-CCCCccCCCCCCCceeccc
Q 043965 8 YWCYICSQ-MVNPR-MEAGIKCPFCESGIVEQMS 39 (342)
Q Consensus 8 ywCh~C~~-~V~p~-~~~e~~CP~C~sGFvEE~~ 39 (342)
+-|-.|.. .+.-- ...+++|+.|+--|-|+.-
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~i 39 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEENII 39 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCccccccc
Confidence 67999976 44211 1247999999776655543
No 197
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.68 E-value=45 Score=23.08 Aligned_cols=40 Identities=25% Similarity=0.503 Sum_probs=26.0
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPS 262 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (342)
..|..|.+.+...+. .+..-+..||..|. .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x61_A 6 SGCGGCGEDVVGDGA-GVVALDRVFHVGCF--------VCSTCRAQLRG 45 (72)
T ss_dssp CCCSSSCSCCCSSSC-CEECSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCCccCCCccCCCce-EEEECCCeEcccCC--------cccccCCcCCc
Confidence 468888887763222 23335677888775 58888888743
No 198
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.31 E-value=29 Score=24.51 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=25.1
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
..|.-|...+.. ..+..-+..||..|. .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~---~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG---RVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS---CCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC---eeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 358888887762 223346778888774 5778877775
No 199
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=27.04 E-value=24 Score=26.76 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.5
Q ss_pred CCccCCCCCCCceecc
Q 043965 23 AGIKCPFCESGIVEQM 38 (342)
Q Consensus 23 ~e~~CP~C~sGFvEE~ 38 (342)
.+.+||+|+--|+.+=
T Consensus 47 g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 47 DEKICPYCSTLYRYDP 62 (87)
T ss_dssp CEECCTTTCCEEECCT
T ss_pred CeEECCCCCCEeEcCC
Confidence 4689999999998763
No 200
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.99 E-value=15 Score=34.40 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=32.2
Q ss_pred cCcccccccccccccCCceeEe---c--ccccccccchHHHhhcCCCCCCcccc
Q 043965 211 DKNLQCAVCLEEFEIGNEAKEM---P--CKHKFHGECIMPWLEVRSSCPVCRFQ 259 (342)
Q Consensus 211 ~~~~~C~ICle~~~~~~~~~~l---p--C~H~Fh~~Ci~~Wl~~~~~CP~CR~~ 259 (342)
.....|+||-..-..+ ++.. . =.+.+|..|-..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567899998775421 1110 1 12567888999998888899999765
No 201
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=26.85 E-value=15 Score=19.62 Aligned_cols=12 Identities=25% Similarity=0.802 Sum_probs=9.1
Q ss_pred ccCCCCCCCcee
Q 043965 25 IKCPFCESGIVE 36 (342)
Q Consensus 25 ~~CP~C~sGFvE 36 (342)
+.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 578888888754
No 202
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.72 E-value=22 Score=20.03 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=10.7
Q ss_pred ccCCCCCCCceec
Q 043965 25 IKCPFCESGIVEQ 37 (342)
Q Consensus 25 ~~CP~C~sGFvEE 37 (342)
++|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (32)
T 2kfq_A 3 FACPACPKRFMRS 15 (32)
T ss_dssp SSSSSSCTTHHHH
T ss_pred CCCCCCCcccCCH
Confidence 6899999998754
No 203
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=26.36 E-value=17 Score=29.84 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=14.1
Q ss_pred eeeccCceeecCCCCCccCCCCCCCc
Q 043965 9 WCYICSQMVNPRMEAGIKCPFCESGI 34 (342)
Q Consensus 9 wCh~C~~~V~p~~~~e~~CP~C~sGF 34 (342)
=|-+|.-+..=..+..++||.|.--+
T Consensus 29 ~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 29 PCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCcceEecCCeEECCcccccc
Confidence 46666665543334446666666555
No 204
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.23 E-value=15 Score=20.76 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.8
Q ss_pred CccCCCCCCCcee
Q 043965 24 GIKCPFCESGIVE 36 (342)
Q Consensus 24 e~~CP~C~sGFvE 36 (342)
.++|+.|+..|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 4789999998865
No 205
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.21 E-value=25 Score=19.98 Aligned_cols=12 Identities=25% Similarity=0.802 Sum_probs=9.6
Q ss_pred ccCCCCCCCcee
Q 043965 25 IKCPFCESGIVE 36 (342)
Q Consensus 25 ~~CP~C~sGFvE 36 (342)
+.|+.|+..|..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 679999988853
No 206
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=25.99 E-value=8.7 Score=27.15 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=29.2
Q ss_pred Cccccccccccc-ccCCceeEecccccccccchHHHhhcCC----CCCCccc
Q 043965 212 KNLQCAVCLEEF-EIGNEAKEMPCKHKFHGECIMPWLEVRS----SCPVCRF 258 (342)
Q Consensus 212 ~~~~C~ICle~~-~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 258 (342)
+...|.||+..- ..+-.-...-|.-.||..|-..|-...+ .|-+||+
T Consensus 8 d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 456899998653 3332333334788888888777653333 4777765
No 207
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=25.92 E-value=29 Score=30.37 Aligned_cols=25 Identities=28% Similarity=0.651 Sum_probs=19.4
Q ss_pred eeeeccCceeecCCCCCccCCCCCC
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCES 32 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~s 32 (342)
-=|..|...+.+.....+.|+.|..
T Consensus 11 ~~Cw~C~~~~~~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 11 PRCWNCGGPWGPGREDRFFCPQCRA 35 (207)
T ss_dssp CBCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred CCCCCCCCCcccccccccccccccc
Confidence 6799999886444556899999964
No 208
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.24 E-value=35 Score=24.40 Aligned_cols=40 Identities=20% Similarity=0.436 Sum_probs=27.8
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
...|..|...+. + . .+..-+..||..|. .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~-~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPIL-D-R-ILRAMGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCC-S-C-CEEETTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeec-c-e-eEEECCccccHHhc--------CcccCCCccCCC
Confidence 356899988876 2 2 33346778888775 688998888644
No 209
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=25.24 E-value=35 Score=27.72 Aligned_cols=43 Identities=26% Similarity=0.455 Sum_probs=27.9
Q ss_pred cccccccccccccCCceeEecccccccccchHHHh------hc-----CCCCCCccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWL------EV-----RSSCPVCRF 258 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl------~~-----~~~CP~CR~ 258 (342)
+..|.||.+-=+ -+--=.|-..||..||.+-+ +. .=.|++|+-
T Consensus 57 ~~~C~vC~dGG~---LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSE---EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCe---eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 456999986422 22122488999999999752 21 127999954
No 210
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.08 E-value=43 Score=23.51 Aligned_cols=42 Identities=21% Similarity=0.519 Sum_probs=28.4
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
...|..|.+.+...+.++ ..-+..||..|. .|-.|+..|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCCCCC
Confidence 457999999886433332 235778888775 588888877544
No 211
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.03 E-value=45 Score=23.65 Aligned_cols=39 Identities=21% Similarity=0.531 Sum_probs=27.4
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|.+.+.. . .+..-+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 2cuq_A 16 PRCARCSKTLTQ-G--GVTYRDQPWHRECL--------VCTGCQTPLAGQ 54 (80)
T ss_dssp CCCTTTCCCCCS-C--CEESSSSEECTTTC--------BCSSSCCBCTTC
T ss_pred CcCCCCCCEecC-c--EEEECCchhhhhhC--------CcccCCCcCCCC
Confidence 468999888763 2 33446778888775 688898888543
No 212
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.77 E-value=17 Score=19.27 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=8.4
Q ss_pred ccCCCCCCCce
Q 043965 25 IKCPFCESGIV 35 (342)
Q Consensus 25 ~~CP~C~sGFv 35 (342)
++|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 57888887775
No 213
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.63 E-value=16 Score=19.75 Aligned_cols=13 Identities=15% Similarity=0.654 Sum_probs=10.0
Q ss_pred ccCCCCCCCceec
Q 043965 25 IKCPFCESGIVEQ 37 (342)
Q Consensus 25 ~~CP~C~sGFvEE 37 (342)
++|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 6799998888653
No 214
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.76 E-value=32 Score=26.93 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=35.7
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCCCc
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSDDF 265 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 265 (342)
+.|..|...|..........=+..||..|..+-+..+..|-.|...|....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 6788898887521122233456778888888776655589999998876544
No 215
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.72 E-value=18 Score=19.29 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=10.0
Q ss_pred CccCCCCCCCcee
Q 043965 24 GIKCPFCESGIVE 36 (342)
Q Consensus 24 e~~CP~C~sGFvE 36 (342)
.++|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3679999888864
No 216
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.57 E-value=33 Score=24.53 Aligned_cols=38 Identities=24% Similarity=0.546 Sum_probs=26.5
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPS 262 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (342)
..|..|.+.+. +. .+..-+..||..|. .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GP--FMVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SC--CBCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ce--EEEECCceeccccC--------CccCCCCccCC
Confidence 36999988877 22 23335778888775 58889888853
No 217
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.31 E-value=34 Score=27.07 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=28.6
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVP 261 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~ 261 (342)
...|..|-..+... .++..-+..||..|. .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~--~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADR--FLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSS--SEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCc--EEEEeCCcEEccccc--------CcCcCCCccc
Confidence 45799999988732 223346788998885 6899998885
No 218
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=24.27 E-value=33 Score=24.05 Aligned_cols=18 Identities=39% Similarity=1.045 Sum_probs=13.6
Q ss_pred eeccCceeecCCCCCccCCCCCC
Q 043965 10 CYICSQMVNPRMEAGIKCPFCES 32 (342)
Q Consensus 10 Ch~C~~~V~p~~~~e~~CP~C~s 32 (342)
|-.|+..+.. + .||.|++
T Consensus 4 C~~C~~v~~~----~-~CpnC~~ 21 (59)
T 3lpe_B 4 CLKCKYLTND----E-ICPICHS 21 (59)
T ss_dssp ETTTCBEESS----S-BCTTTCC
T ss_pred cccCCcccCC----C-CCCCCCC
Confidence 7888887631 2 7999987
No 219
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=24.08 E-value=20 Score=26.79 Aligned_cols=17 Identities=12% Similarity=0.548 Sum_probs=13.9
Q ss_pred CCccCCCCCCCceeccc
Q 043965 23 AGIKCPFCESGIVEQMS 39 (342)
Q Consensus 23 ~e~~CP~C~sGFvEE~~ 39 (342)
.+.+||+|+--|+-+=.
T Consensus 52 g~~~CpYCg~~f~l~~~ 68 (80)
T 2jvm_A 52 GFVECGYCDRRYIHESF 68 (80)
T ss_dssp CEEECSSSSCEEEEHHH
T ss_pred CeEECCCCCCEEEecCC
Confidence 35899999999997643
No 220
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.02 E-value=25 Score=20.02 Aligned_cols=14 Identities=14% Similarity=0.378 Sum_probs=11.2
Q ss_pred CCccCCCCCCCcee
Q 043965 23 AGIKCPFCESGIVE 36 (342)
Q Consensus 23 ~e~~CP~C~sGFvE 36 (342)
..++|+.|+..|..
T Consensus 8 ~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 8 KTHLCDMCGKKFKS 21 (36)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred CCeecCcCCCCcCc
Confidence 35899999998864
No 221
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.87 E-value=38 Score=26.53 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=4.6
Q ss_pred cccccccccc
Q 043965 215 QCAVCLEEFE 224 (342)
Q Consensus 215 ~C~ICle~~~ 224 (342)
.|..|...+.
T Consensus 10 ~C~~C~~~I~ 19 (123)
T 2l3k_A 10 LCASCDKRIR 19 (123)
T ss_dssp CCSSSSCCCC
T ss_pred cccCCCCeec
Confidence 3555544443
No 222
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.83 E-value=49 Score=23.43 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=27.2
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|..|...+.. . .+..-+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-N--YLSAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-S--CEEETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc-e--eEEECCCeEecCcC--------ChhhCCCCCCCC
Confidence 469999888773 2 23335677888775 588998888654
No 223
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.76 E-value=20 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=15.3
Q ss_pred eeeccCceeecCCCCCccCCCCCCCceec
Q 043965 9 WCYICSQMVNPRMEAGIKCPFCESGIVEQ 37 (342)
Q Consensus 9 wCh~C~~~V~p~~~~e~~CP~C~sGFvEE 37 (342)
.|-.|.+++... +..+.|..|+..|..+
T Consensus 34 ~CP~Cq~eL~~~-g~~~hC~~C~~~f~~~ 61 (101)
T 2jne_A 34 HCPQCQHVLDQD-NGHARCRSCGEFIEMK 61 (101)
T ss_dssp BCSSSCSBEEEE-TTEEEETTTCCEEEEE
T ss_pred cCccCCCcceec-CCEEECccccchhhcc
Confidence 466666666533 2234466666665544
No 224
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=23.58 E-value=31 Score=25.09 Aligned_cols=17 Identities=35% Similarity=0.987 Sum_probs=12.1
Q ss_pred CccCCCCCCC-ceecccc
Q 043965 24 GIKCPFCESG-IVEQMSS 40 (342)
Q Consensus 24 e~~CP~C~sG-FvEE~~~ 40 (342)
..+||.|++| .++...+
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~ 19 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKD 19 (78)
T ss_dssp -CBCTTTSSSBEEEEEEE
T ss_pred ceECCCCCCCeeEeEEEE
Confidence 4689999987 6665543
No 225
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.48 E-value=19 Score=19.24 Aligned_cols=13 Identities=15% Similarity=0.736 Sum_probs=9.7
Q ss_pred CccCCCCCCCcee
Q 043965 24 GIKCPFCESGIVE 36 (342)
Q Consensus 24 e~~CP~C~sGFvE 36 (342)
.+.|+.|+..|..
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3678889888753
No 226
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.45 E-value=12 Score=20.17 Aligned_cols=12 Identities=33% Similarity=1.110 Sum_probs=9.3
Q ss_pred ccCCCCCCCcee
Q 043965 25 IKCPFCESGIVE 36 (342)
Q Consensus 25 ~~CP~C~sGFvE 36 (342)
++|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 678889888854
No 227
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.32 E-value=29 Score=23.38 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=10.1
Q ss_pred CccCCCCCCCce
Q 043965 24 GIKCPFCESGIV 35 (342)
Q Consensus 24 e~~CP~C~sGFv 35 (342)
-+.||.|+-+|-
T Consensus 12 ~~~CPrCn~~f~ 23 (49)
T 2e72_A 12 RKICPRCNAQFR 23 (49)
T ss_dssp CCCCTTTCCCCS
T ss_pred ceeCCccccccc
Confidence 478999999884
No 228
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.26 E-value=21 Score=25.59 Aligned_cols=26 Identities=35% Similarity=0.790 Sum_probs=21.4
Q ss_pred eeeeccCceeecCCCCCccCCCCCCCceec
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQ 37 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~sGFvEE 37 (342)
..|..|.+.|. ++ -++| +|+.-|--.
T Consensus 16 ~rC~~C~kkvg-l~--~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 16 NRCFSCNKKVG-VM--GFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCTTTCCCCT-TS--CEEC-TTSCEECSS
T ss_pred CcChhhCCccc-cc--CeEe-ecCCEeccc
Confidence 78999999986 32 5899 999999754
No 229
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.19 E-value=20 Score=20.60 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=10.8
Q ss_pred CccCCCCCCCcee
Q 043965 24 GIKCPFCESGIVE 36 (342)
Q Consensus 24 e~~CP~C~sGFvE 36 (342)
-++|+.|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4789999998864
No 230
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.06 E-value=20 Score=20.38 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=10.6
Q ss_pred CccCCCCCCCcee
Q 043965 24 GIKCPFCESGIVE 36 (342)
Q Consensus 24 e~~CP~C~sGFvE 36 (342)
.++|+.|+..|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 4789999998864
No 231
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.92 E-value=26 Score=26.45 Aligned_cols=27 Identities=15% Similarity=0.626 Sum_probs=21.2
Q ss_pred eeeeccCceeecCCCCCccCCCCCCCceec
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQ 37 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~sGFvEE 37 (342)
..|+.|.+.|... .-+.| +|+.-|--.
T Consensus 26 ~rC~~C~kkvgl~--~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 26 KHCFLCGKKTGLA--TSFEC-RCGNNFCAS 52 (85)
T ss_dssp CBCSSSCCBCSSS--SCEEC-TTCCEECTT
T ss_pred ccchhhCCeeccc--CCeEc-CCCCEeccc
Confidence 7899999998622 25899 699999754
No 232
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.86 E-value=46 Score=22.77 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=29.1
Q ss_pred cccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 213 NLQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
...|..|...+...+.++. .=+..||..|. .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 3579999998875443322 35677888886 588888877544
No 233
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.54 E-value=21 Score=20.37 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=10.6
Q ss_pred CccCCCCCCCcee
Q 043965 24 GIKCPFCESGIVE 36 (342)
Q Consensus 24 e~~CP~C~sGFvE 36 (342)
.++|+.|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elt_A 9 PYKCPQCSYASAI 21 (36)
T ss_dssp SEECSSSSCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4889999988854
No 234
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.06 E-value=18 Score=19.41 Aligned_cols=14 Identities=14% Similarity=0.487 Sum_probs=10.6
Q ss_pred CccCCCCCCCceec
Q 043965 24 GIKCPFCESGIVEQ 37 (342)
Q Consensus 24 e~~CP~C~sGFvEE 37 (342)
.++|+.|+..|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 3 PYVCIHCQRQFADP 16 (30)
Confidence 36899999888653
No 235
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=22.41 E-value=16 Score=25.68 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=24.4
Q ss_pred cccccccccccccCCceeEec--cc-ccccccchHHHh--hcCCCCCCccc
Q 043965 213 NLQCAVCLEEFEIGNEAKEMP--CK-HKFHGECIMPWL--EVRSSCPVCRF 258 (342)
Q Consensus 213 ~~~C~ICle~~~~~~~~~~lp--C~-H~Fh~~Ci~~Wl--~~~~~CP~CR~ 258 (342)
...| ||..... +.-+.-=. |. ..||..|+.--- ..+-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4457 8988632 21111112 44 789999996211 11236999964
No 236
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.28 E-value=21 Score=20.61 Aligned_cols=14 Identities=29% Similarity=1.006 Sum_probs=11.3
Q ss_pred CccCCCCCCCceec
Q 043965 24 GIKCPFCESGIVEQ 37 (342)
Q Consensus 24 e~~CP~C~sGFvEE 37 (342)
.++|+.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 9 AMKCPYCDFYFMKN 22 (37)
T ss_dssp CEECSSSSCEECSS
T ss_pred CeECCCCChhhccC
Confidence 48899999988653
No 237
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.05 E-value=35 Score=24.76 Aligned_cols=24 Identities=25% Similarity=0.717 Sum_probs=19.0
Q ss_pred eeeeccCceeecCCCCCccCCCCC
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCE 31 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~ 31 (342)
-||..|...|--+..+.+.|-.|.
T Consensus 35 t~C~~C~~~lwGl~kqG~~C~~C~ 58 (77)
T 2enn_A 35 TFCSVCHEFVWGLNKQGYQCRQCN 58 (77)
T ss_dssp EECSSSCCEECCTTCCEEECSSSC
T ss_pred cCccccChhhccccccccCcCCCC
Confidence 699999999854444679999885
No 238
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.94 E-value=23 Score=20.64 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.3
Q ss_pred CccCCCCCCCceec
Q 043965 24 GIKCPFCESGIVEQ 37 (342)
Q Consensus 24 e~~CP~C~sGFvEE 37 (342)
.++|+.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elm_A 9 LYYCSQCHYSSITK 22 (37)
T ss_dssp EEECSSSSCEEECH
T ss_pred CeECCCCCcccCCH
Confidence 38899999999753
No 239
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=21.67 E-value=35 Score=21.91 Aligned_cols=15 Identities=27% Similarity=0.961 Sum_probs=11.3
Q ss_pred CCCCc---eeeeccCcee
Q 043965 3 DAMVG---YWCYICSQMV 17 (342)
Q Consensus 3 ~~~~~---ywCh~C~~~V 17 (342)
|.|++ .||-.|.+..
T Consensus 4 ~~~~~~~yl~CE~C~~~~ 21 (39)
T 2l9z_A 4 ENMATLFTIWCTLCDRAY 21 (39)
T ss_dssp CCSCCSCSEEEGGGTEEE
T ss_pred ccchhhhhhHHHHHhhhc
Confidence 45555 8999998875
No 240
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.55 E-value=40 Score=28.17 Aligned_cols=46 Identities=17% Similarity=0.485 Sum_probs=31.1
Q ss_pred Ccccccccccccc--cCCceeEecccccccccchHHHhhcCC--CCCCccc
Q 043965 212 KNLQCAVCLEEFE--IGNEAKEMPCKHKFHGECIMPWLEVRS--SCPVCRF 258 (342)
Q Consensus 212 ~~~~C~ICle~~~--~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~--~CP~CR~ 258 (342)
....|.+|...|. .+.......|+|.+|..|-. |+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 3568999999874 23344555699999999973 443222 4777765
No 241
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=21.34 E-value=33 Score=23.97 Aligned_cols=24 Identities=25% Similarity=0.677 Sum_probs=18.3
Q ss_pred eeeeccCceeecCCCCCccCCCCC
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCE 31 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~ 31 (342)
-||..|...+.-..-+.++|-.|.
T Consensus 24 t~C~~C~~~l~Gl~~qg~~C~~C~ 47 (65)
T 2enz_A 24 TFCEHCGTLLWGLARQGLKCDACG 47 (65)
T ss_dssp CBCSSSCCBCCCSSSCSEEESSSC
T ss_pred cCchhcChhheecCCcccccCCCC
Confidence 689999998853344678998885
No 242
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=21.14 E-value=41 Score=25.17 Aligned_cols=19 Identities=32% Similarity=0.908 Sum_probs=14.5
Q ss_pred eeeccCceeecCCCCCccCCCCCC
Q 043965 9 WCYICSQMVNPRMEAGIKCPFCES 32 (342)
Q Consensus 9 wCh~C~~~V~p~~~~e~~CP~C~s 32 (342)
=|-.|+..+. .| .||.|++
T Consensus 25 AC~~C~~v~~----~d-~CPnCgs 43 (81)
T 3p8b_A 25 ACRHCHYITS----ED-RCPVCGS 43 (81)
T ss_dssp EETTTCBEES----SS-SCTTTCC
T ss_pred HHhhCCCccC----CC-CCCCCCC
Confidence 3889998874 12 6999987
No 243
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.96 E-value=12 Score=27.16 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=21.6
Q ss_pred eeeeccCceeecCCCCC-ccCCCCCCCceec
Q 043965 8 YWCYICSQMVNPRMEAG-IKCPFCESGIVEQ 37 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e-~~CP~C~sGFvEE 37 (342)
..|..|.+.|- +.+.| ++| +|+.-|--.
T Consensus 16 ~rC~~C~kk~g-L~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 16 RRCFQCQTKLE-LVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp TBCSSSCCBCC-HHHHHHHCC-SSSCCCCTT
T ss_pred CcchhhCCeec-ccccCceEe-cCCCEehhc
Confidence 78999999996 32222 899 999999754
No 244
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.88 E-value=55 Score=22.94 Aligned_cols=42 Identities=19% Similarity=0.464 Sum_probs=28.3
Q ss_pred cccccccccccc-C-CceeEecccccccccchHHHhhcCCCCCCcccccCCC
Q 043965 214 LQCAVCLEEFEI-G-NEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPSD 263 (342)
Q Consensus 214 ~~C~ICle~~~~-~-~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~~ 263 (342)
..|+.|...+.. + ....+..=+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCCCCC
Confidence 469999888873 1 11233335778898885 688998888643
No 245
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.43 E-value=28 Score=24.90 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=21.5
Q ss_pred eeeeccCceeecCCCCCccCCCCCCCceec
Q 043965 8 YWCYICSQMVNPRMEAGIKCPFCESGIVEQ 37 (342)
Q Consensus 8 ywCh~C~~~V~p~~~~e~~CP~C~sGFvEE 37 (342)
..|..|.+.|. ++ -++| +|+.-|--.
T Consensus 16 ~rC~~C~kkvg-l~--~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 16 NRCTVCRKRVG-LT--GFMC-RCGTTFCGS 41 (64)
T ss_dssp CCCTTTCCCCC-TT--CEEC-SSSCEECTT
T ss_pred CcChhhCCccC-cc--CEEe-ecCCEeccc
Confidence 89999999986 32 6899 899999754
No 246
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=20.40 E-value=45 Score=22.71 Aligned_cols=24 Identities=29% Similarity=0.780 Sum_probs=17.4
Q ss_pred eeeccCceeecCC----------------CCCccCCCCCC
Q 043965 9 WCYICSQMVNPRM----------------EAGIKCPFCES 32 (342)
Q Consensus 9 wCh~C~~~V~p~~----------------~~e~~CP~C~s 32 (342)
.|+.|.+.|+-.. +-+++||.|..
T Consensus 10 ~C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 10 SCAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp ECTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 5899999885321 23699999974
No 247
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.34 E-value=53 Score=25.69 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=23.8
Q ss_pred ccccccccccccCCceeEecccccccccchHHHhhcCCCCCCcccccCC
Q 043965 214 LQCAVCLEEFEIGNEAKEMPCKHKFHGECIMPWLEVRSSCPVCRFQVPS 262 (342)
Q Consensus 214 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~l~~ 262 (342)
+.|..|...|..........=+..||..|..+-+.....|..|...|..
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 5566666665421112222234555655555443322356666666643
No 248
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.24 E-value=24 Score=20.16 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=10.7
Q ss_pred CccCCCCCCCcee
Q 043965 24 GIKCPFCESGIVE 36 (342)
Q Consensus 24 e~~CP~C~sGFvE 36 (342)
.++|+.|+..|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elv_A 9 LYDCHICERKFKN 21 (36)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 4789999988864
Done!