Query 043968
Match_columns 107
No_of_seqs 103 out of 1136
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:31:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tbg_A Cytochrome P450 2D6; mo 99.7 5.2E-17 1.8E-21 108.6 7.5 78 28-105 5-83 (479)
2 3swz_A Steroid 17-alpha-hydrox 99.6 7.6E-15 2.6E-19 98.8 7.7 75 30-104 5-81 (494)
3 3nxu_A Cytochrome P450 3A4; al 99.6 4.6E-15 1.6E-19 99.5 5.5 74 31-104 12-86 (485)
4 3pm0_A Cypib1, cytochrome P450 99.5 9E-15 3.1E-19 98.5 6.6 76 30-105 6-81 (507)
5 3e6i_A CYPIIE1, P450-J, cytoch 99.5 1.8E-14 6.1E-19 96.4 7.5 76 29-104 6-82 (476)
6 3s79_A Cytochrome P450 19A1; o 99.5 1.7E-14 5.9E-19 97.1 5.6 72 31-104 43-118 (503)
7 2hi4_A Cytochrome P450 1A2; CY 99.5 8.7E-14 3E-18 93.8 7.2 76 29-104 12-87 (495)
8 1po5_A Cytochrome P450 2B4; ox 99.4 4.8E-13 1.6E-17 89.8 7.6 72 32-103 9-81 (476)
9 3qz1_A Steroid 21-hydroxylase; 99.4 2.1E-13 7.3E-18 91.6 5.8 72 28-105 24-96 (496)
10 3k9v_A 1,25-dihydroxyvitamin D 99.4 1.4E-13 4.9E-18 92.0 4.8 78 25-103 16-98 (482)
11 3ld6_A Lanosterol 14-alpha dem 99.4 1.2E-13 4.1E-18 92.4 3.7 71 33-103 11-82 (461)
12 1r9o_A Cytochrome P450 2C9; mo 99.4 5.9E-13 2E-17 89.3 6.2 71 33-103 11-82 (477)
13 2fdv_A Cytochrome P450 2A6; CY 99.4 1.3E-12 4.4E-17 87.7 6.9 71 33-103 10-81 (476)
14 3gw9_A Sterol 14alpha-demethyl 99.3 5.2E-13 1.8E-17 88.7 3.2 72 33-104 3-76 (450)
15 3czh_A Cytochrome P450 2R1; vi 99.3 1.6E-12 5.6E-17 87.4 5.5 73 31-103 10-85 (481)
16 3i3k_A Lanosterol 14-alpha dem 99.3 8.2E-13 2.8E-17 88.2 3.8 71 30-100 8-79 (461)
17 3v8d_A Cholesterol 7-alpha-mon 99.3 8.2E-13 2.8E-17 88.9 3.3 75 27-101 7-83 (491)
18 3b6h_A Prostacyclin synthase; 99.3 9.8E-13 3.4E-17 88.6 3.0 68 29-96 14-82 (498)
19 2cib_A Cytochrome P450 51; hem 99.2 1.3E-11 4.5E-16 82.5 6.4 71 33-103 4-75 (455)
20 3dax_A Cytochrome P450 7A1; ch 99.2 3.9E-12 1.3E-16 85.4 2.8 67 29-95 9-76 (491)
21 3b98_A Prostaglandin I2 syntha 99.2 6.3E-12 2.1E-16 84.1 2.9 67 29-95 14-81 (475)
22 2ve3_A Putative cytochrome P45 99.2 9.4E-12 3.2E-16 83.0 3.4 74 27-101 6-79 (444)
23 3n9y_A Cholesterol SIDE-chain 99.1 6E-11 2E-15 79.6 4.9 75 28-104 4-83 (487)
24 3dbg_A Putative cytochrome P45 99.1 4E-11 1.4E-15 80.3 2.9 67 32-101 22-88 (467)
25 2ij2_A Cytochrome P450 BM3; mo 99.1 3E-10 1E-14 76.3 6.8 61 33-93 3-64 (470)
26 2cd8_A Cytochrome P450 monooxy 99.1 7.4E-11 2.5E-15 78.8 3.1 71 30-103 23-95 (436)
27 1n97_A CYP175A1; electron tran 98.8 1E-09 3.4E-14 72.2 1.3 62 38-102 4-65 (389)
28 1jfb_A Nitric-oxide reductase 98.6 4.8E-08 1.7E-12 64.4 5.8 65 35-103 3-69 (404)
29 3dsk_A Cytochrome P450 74A, ch 98.5 4.7E-08 1.6E-12 65.8 3.4 66 28-93 23-101 (495)
30 1ued_A P450 OXYC, P450 monooxy 98.5 1.1E-07 3.6E-12 63.0 4.9 64 31-102 8-78 (406)
31 3awm_A Fatty acid alpha-hydrox 98.5 7.1E-08 2.4E-12 63.8 2.9 62 35-101 4-66 (415)
32 2zbx_A Cytochrome P450-SU1; be 98.5 4.5E-07 1.6E-11 60.0 6.4 60 34-94 6-67 (412)
33 1izo_A P450bsbeta, cytochrome 98.4 1.4E-07 4.8E-12 62.4 2.5 53 40-92 7-60 (417)
34 2jjn_A Cytochrome P450 113A1; 98.3 5.1E-07 1.7E-11 59.8 4.4 68 21-103 7-74 (411)
35 3mdm_A Cholesterol 24-hydroxyl 98.2 2.7E-06 9.2E-11 56.6 6.0 44 51-94 9-52 (456)
36 1z8o_A 6-deoxyerythronolide B 98.2 3E-06 1E-10 56.0 6.0 51 50-103 12-62 (404)
37 3ivy_A Cytochrome P450 CYP125; 98.2 4.2E-06 1.4E-10 55.8 6.7 69 34-104 19-95 (433)
38 1s1f_A Putative cytochrome P45 98.2 3.3E-06 1.1E-10 55.9 6.0 66 32-103 7-74 (406)
39 1cpt_A Cytochrome P450-TERP; o 98.2 9.7E-07 3.3E-11 58.7 3.2 59 43-103 11-75 (428)
40 3abb_A CYP105D6, cytochrome P4 98.2 2.7E-06 9.1E-11 56.3 5.2 46 48-94 20-66 (408)
41 4fb2_A P450CIN; heme, monooxyg 98.2 4.2E-06 1.4E-10 55.1 5.7 54 50-105 17-72 (398)
42 3a4g_A Vitamin D hydroxylase; 98.1 4.7E-06 1.6E-10 55.2 5.9 51 50-103 18-68 (411)
43 3ejb_B Biotin biosynthesis cyt 98.1 8E-06 2.7E-10 53.8 6.5 51 51-103 12-62 (404)
44 2zwu_A Camphor 5-monooxygenase 98.1 6.7E-06 2.3E-10 54.6 5.5 70 29-102 7-86 (415)
45 3oo3_A OXY protein; cytochrome 98.1 3.3E-06 1.1E-10 55.2 3.8 52 51-104 11-66 (384)
46 3aba_A Cytochrome P450; oxidor 98.1 6.5E-06 2.2E-10 54.4 5.2 50 50-102 17-67 (403)
47 3dan_A Cytochrome P450 74A2; A 98.0 9.3E-07 3.2E-11 59.1 1.1 48 29-76 5-59 (473)
48 1odo_A Putative cytochrome P45 97.9 1.7E-05 5.8E-10 52.4 5.5 46 49-95 12-57 (408)
49 2y5n_A MYCG, P-450-like protei 97.9 1.4E-05 4.8E-10 53.1 5.0 50 50-102 35-85 (417)
50 1n40_A P450 MT2, cytochrome P4 97.9 1.5E-05 5.1E-10 52.5 4.4 50 50-102 14-66 (396)
51 2xbk_A PIMD protein; epoxidati 97.9 2.8E-05 9.4E-10 51.5 5.5 50 51-103 25-75 (404)
52 2z3t_A Cytochrome P450; monoxy 97.9 3.2E-05 1.1E-09 51.5 5.8 50 51-103 19-70 (425)
53 1gwi_A CYP154C1, cytochrome P4 97.8 4.1E-05 1.4E-09 50.7 6.0 46 49-95 14-60 (411)
54 1q5d_A P450 epoxidase; cytochr 97.8 3.9E-05 1.3E-09 50.9 5.7 48 50-102 24-71 (419)
55 2z36_A MOXA, cytochrome P450 t 97.8 2.7E-05 9.1E-10 51.7 4.8 50 50-102 20-70 (413)
56 3tyw_A Putative cytochrome P45 97.7 6.1E-05 2.1E-09 49.9 5.6 50 50-102 27-77 (417)
57 2wm5_A CYP124, putative cytoch 97.7 6E-05 2.1E-09 50.3 5.2 50 52-103 44-100 (435)
58 3tkt_A Cytochrome P450; aromat 97.7 4.9E-05 1.7E-09 50.9 4.3 50 54-105 47-99 (450)
59 3oft_A Cytochrome P450, CYP101 97.6 7E-05 2.4E-09 49.2 4.8 51 50-103 22-72 (396)
60 3lxh_A Cytochrome P450; heme, 97.5 0.00017 5.8E-09 47.8 5.6 51 51-103 37-88 (421)
61 3mgx_A Putative P450 monooxyge 97.5 0.00021 7E-09 47.5 6.0 51 52-104 37-89 (415)
62 2uuq_A CYP130, cytochrome P450 97.5 0.00013 4.4E-09 48.4 4.6 50 51-104 24-78 (414)
63 2xkr_A CYP142, putative cytoch 97.3 0.00042 1.4E-08 45.6 5.5 48 51-103 17-64 (398)
64 2dkk_A Cytochrome P450; CYP158 97.3 0.00026 9E-09 46.9 4.4 48 52-102 27-76 (411)
65 3nc3_A Cytochrome P450 CYPX; c 97.2 0.0004 1.4E-08 46.4 4.6 49 52-104 53-101 (441)
66 3r9b_A Cytochrome P450 164A2; 97.1 0.00065 2.2E-08 44.8 4.7 48 51-103 28-75 (418)
67 1io7_A Cytochrome P450 CYP119; 97.0 0.00091 3.1E-08 43.5 4.5 43 55-103 2-44 (368)
68 3buj_A CALO2; heme, iron, meta 96.9 0.00056 1.9E-08 44.9 3.1 45 52-102 13-57 (397)
69 3rwl_A Cytochrome P450 alkane 96.9 0.0026 8.8E-08 42.3 6.0 50 51-102 37-87 (426)
70 3b4x_A 367AA long hypothetical 96.8 0.0013 4.5E-08 42.8 3.9 42 55-102 2-43 (367)
71 1lfk_A OXYB, P450 monooxygenas 96.8 0.00034 1.2E-08 46.0 1.1 44 58-103 19-66 (398)
72 2rfb_A Cytochrome P450; heme, 96.2 0.0034 1.2E-07 40.4 2.8 34 63-102 2-35 (343)
73 4dnj_A Putative cytochrome P45 94.9 0.056 1.9E-06 35.8 5.3 57 40-100 19-78 (412)
74 2yjn_B Erycii, DTDP-4-keto-6-d 94.7 0.0058 2E-07 40.4 0.2 56 40-102 42-102 (381)
75 3p3o_A Cytochrome P450; monoox 93.4 0.015 5E-07 38.5 0.1 42 51-95 32-73 (416)
76 2wiy_A XPLA-heme, cytochrome P 90.6 0.19 6.5E-06 33.0 2.9 43 52-100 20-62 (394)
77 2krb_A Eukaryotic translation 89.4 1.2 4E-05 22.1 7.5 59 43-101 5-75 (81)
78 1s79_A Lupus LA protein; RRM, 88.4 1.7 5.9E-05 22.9 6.5 59 43-103 15-81 (103)
79 2nlw_A Eukaryotic translation 88.2 1.8 6E-05 22.8 5.5 60 42-101 18-89 (105)
80 1iqt_A AUF1, heterogeneous nuc 87.5 1.5 5.1E-05 21.2 4.4 50 54-103 12-70 (75)
81 2diu_A KIAA0430 protein; struc 85.3 2.5 8.7E-05 22.4 4.6 59 43-102 13-75 (96)
82 2mss_A Protein (musashi1); RNA 80.3 3.6 0.00012 19.8 4.7 50 54-103 12-70 (75)
83 2a3j_A U1 small nuclear ribonu 79.6 5.8 0.0002 21.8 5.4 61 42-102 32-101 (127)
84 3v4m_A Splicing factor U2AF 65 77.5 6.1 0.00021 20.9 4.6 48 55-102 29-88 (105)
85 2pe8_A Splicing factor 45; RRM 77.4 6 0.00021 20.9 4.5 63 40-102 9-85 (105)
86 1x5p_A Negative elongation fac 75.5 5.3 0.00018 20.4 3.9 56 42-101 18-77 (97)
87 3lqv_A PRE-mRNA branch site pr 74.8 7.4 0.00025 20.5 7.7 65 36-102 5-76 (115)
88 2dgs_A DAZ-associated protein 74.7 6.7 0.00023 20.0 5.4 59 42-102 13-80 (99)
89 3s7r_A Heterogeneous nuclear r 74.5 3.2 0.00011 20.7 2.8 59 42-102 14-81 (87)
90 2do4_A Squamous cell carcinoma 74.0 7 0.00024 20.0 4.1 59 42-102 20-87 (100)
91 3ue2_A Poly(U)-binding-splicin 73.9 8.6 0.00029 20.9 4.8 62 41-102 22-100 (118)
92 1whv_A Poly(A)-specific ribonu 73.1 3 0.0001 22.3 2.4 39 54-92 28-67 (100)
93 2dgu_A Heterogeneous nuclear r 73.0 7.8 0.00027 20.0 4.9 58 42-101 14-73 (103)
94 4dxy_A Cytochrome P450, CYP101 72.8 16 0.00055 24.1 6.4 50 51-102 36-86 (417)
95 2cq3_A RNA-binding protein 9; 72.6 8 0.00027 19.9 4.5 58 42-101 18-83 (103)
96 2kvi_A Nuclear polyadenylated 71.9 8.1 0.00028 19.6 5.3 59 43-102 14-74 (96)
97 2hvz_A Splicing factor, argini 71.4 8.5 0.00029 19.7 4.6 57 44-102 5-66 (101)
98 4fxv_A ELAV-like protein 1; RN 71.1 8.9 0.0003 19.8 5.3 59 42-102 22-90 (99)
99 1nu4_A U1A RNA binding domain; 70.6 8.6 0.00029 19.4 5.2 61 42-102 11-80 (97)
100 2jwn_A Embryonic polyadenylate 70.3 7.6 0.00026 20.7 3.8 57 43-101 40-105 (124)
101 2voo_A Lupus LA protein; RNA-b 69.7 9.6 0.00033 22.4 4.4 58 43-102 113-178 (193)
102 2cpf_A RNA binding motif prote 69.6 8.5 0.00029 19.5 3.8 57 43-101 9-78 (98)
103 3s6e_A RNA-binding protein 39; 69.5 7 0.00024 21.1 3.5 47 56-102 32-84 (114)
104 3n9u_C Cleavage and polyadenyl 69.5 13 0.00045 21.1 5.2 58 43-102 59-128 (156)
105 3mdf_A Peptidyl-prolyl CIS-tra 69.1 8.6 0.00029 18.8 5.0 59 42-102 10-78 (85)
106 3md1_A Nuclear and cytoplasmic 68.6 8.3 0.00028 18.8 3.5 48 55-102 15-72 (83)
107 3ucg_A Polyadenylate-binding p 67.7 9.6 0.00033 18.8 4.1 58 43-102 10-76 (89)
108 3ctr_A Poly(A)-specific ribonu 67.3 2.4 8.1E-05 22.7 1.2 48 54-101 18-68 (101)
109 2cjk_A Nuclear polyadenylated 67.2 14 0.00046 20.5 4.6 58 43-102 91-157 (167)
110 1p27_B RNA-binding protein 8A; 67.0 11 0.00038 19.4 5.1 59 42-102 26-94 (106)
111 1x5u_A Splicing factor 3B subu 66.9 11 0.00038 19.3 6.1 59 42-102 18-86 (105)
112 2dgt_A RNA-binding protein 30; 66.9 10 0.00036 19.0 4.2 58 42-101 13-72 (92)
113 2d9o_A DNAJ (HSP40) homolog, s 66.9 12 0.00041 19.6 5.9 48 54-102 30-81 (100)
114 2jvo_A Nucleolar protein 3; nu 66.4 10 0.00035 19.9 3.8 58 43-102 35-94 (108)
115 2dgv_A HnRNP M, heterogeneous 66.3 11 0.00036 18.8 4.8 58 43-102 12-77 (92)
116 1x4b_A Heterogeneous nuclear r 66.2 8 0.00027 20.4 3.3 57 43-101 31-96 (116)
117 4f25_A Polyadenylate-binding p 66.2 11 0.00039 19.9 4.0 57 43-101 9-73 (115)
118 2bz2_A Negative elongation fac 66.0 9.7 0.00033 20.6 3.7 57 42-102 42-102 (121)
119 2cph_A RNA binding motif prote 65.9 12 0.00041 19.3 6.1 59 42-102 18-88 (107)
120 2rs2_A Musashi-1, RNA-binding 65.6 13 0.00043 19.5 4.8 58 42-101 28-94 (109)
121 3ex7_B RNA-binding protein 8A; 65.2 14 0.00047 19.7 6.2 59 42-102 25-93 (126)
122 2jvr_A Nucleolar protein 3; RN 65.2 14 0.00047 19.7 5.6 58 42-101 31-95 (111)
123 2cqd_A RNA-binding region cont 64.7 14 0.00046 19.5 4.7 58 42-101 20-86 (116)
124 2dh8_A DAZ-associated protein 64.1 6.5 0.00022 20.3 2.7 57 43-101 20-85 (105)
125 2dnm_A SRP46 splicing factor; 63.9 13 0.00044 19.0 4.3 59 42-102 16-84 (103)
126 1jmt_A Splicing factor U2AF 35 63.9 14 0.00048 19.3 4.4 45 58-102 43-97 (104)
127 2cq4_A RNA binding motif prote 63.7 9.7 0.00033 20.0 3.4 58 43-102 29-95 (114)
128 2ywk_A Putative RNA-binding pr 63.6 10 0.00036 19.0 3.4 59 42-102 19-86 (95)
129 3pgw_S U1-70K; protein-RNA com 63.2 24 0.00083 23.7 5.8 58 42-101 105-172 (437)
130 2xnq_A Nuclear polyadenylated 63.2 13 0.00046 18.9 4.8 59 42-101 25-85 (97)
131 3ulh_A THO complex subunit 4; 63.1 13 0.00045 19.1 3.8 59 42-102 32-99 (107)
132 2ghp_A U4/U6 snRNA-associated 62.9 24 0.00082 21.8 5.5 59 42-102 44-109 (292)
133 2err_A Ataxin-2-binding protei 62.9 6 0.0002 20.8 2.4 58 43-102 33-98 (109)
134 2dgx_A KIAA0430 protein; RRM d 62.8 13 0.00046 18.8 5.0 60 42-101 12-80 (96)
135 4a8x_A RNA-binding protein wit 62.3 13 0.00043 18.3 4.9 58 43-102 8-76 (88)
136 1uaw_A Mouse-musashi-1; RNP-ty 61.4 9.2 0.00032 18.3 2.8 47 56-102 15-70 (77)
137 1wg5_A Heterogeneous nuclear r 61.1 15 0.00052 18.9 4.8 58 43-102 19-85 (104)
138 3beg_B Splicing factor, argini 60.9 17 0.00057 19.2 5.6 59 42-102 19-80 (115)
139 1whx_A Hypothetical protein ri 60.8 16 0.00056 19.1 6.2 58 43-102 14-75 (111)
140 2cqi_A Nucleolysin TIAR; RNA r 60.5 15 0.00052 18.7 4.3 58 42-101 18-83 (103)
141 1u6f_A Tcubp1, RNA-binding pro 60.0 19 0.00064 19.6 4.5 57 43-101 46-112 (139)
142 1x4g_A Nucleolysin TIAR; struc 59.6 17 0.00057 18.9 4.9 57 43-101 29-89 (109)
143 2cqb_A Peptidyl-prolyl CIS-tra 59.4 16 0.00055 18.6 4.8 59 41-101 14-82 (102)
144 2cpz_A CUG triplet repeat RNA- 59.1 15 0.0005 19.3 3.6 58 42-101 28-95 (115)
145 2la4_A Nuclear and cytoplasmic 58.3 17 0.00058 18.5 4.0 58 43-102 31-92 (101)
146 3bs9_A Nucleolysin TIA-1 isofo 58.3 15 0.00052 17.9 4.4 58 43-102 10-77 (87)
147 2cqc_A Arginine/serine-rich sp 58.0 16 0.00055 18.2 5.5 60 41-102 17-86 (95)
148 1x5s_A Cold-inducible RNA-bind 57.7 17 0.00059 18.4 5.5 59 42-102 15-83 (102)
149 1wf1_A RNA-binding protein RAL 57.0 15 0.00051 19.1 3.4 58 43-101 31-90 (110)
150 2cpi_A CCR4-NOT transcription 56.5 6.5 0.00022 20.7 1.8 58 42-101 18-91 (111)
151 1whw_A Hypothetical protein ri 56.0 18 0.00063 18.2 5.5 57 43-101 12-78 (99)
152 2x1f_A MRNA 3'-END-processing 55.9 18 0.00063 18.2 4.9 57 43-101 6-72 (96)
153 2i2y_A Fusion protein consists 55.8 24 0.00082 19.5 6.2 60 42-103 76-140 (150)
154 1l3k_A Heterogeneous nuclear r 55.6 16 0.00055 20.9 3.6 58 43-102 108-174 (196)
155 2cpj_A Non-POU domain-containi 55.0 17 0.00057 18.4 3.3 59 42-102 18-80 (99)
156 2dgo_A Cytotoxic granule-assoc 54.7 21 0.00073 18.6 4.4 58 42-101 18-85 (115)
157 1rk8_A CG8781-PA, CG8781-PA pr 54.6 27 0.00092 19.7 4.9 59 42-102 75-143 (165)
158 2dnz_A Probable RNA-binding pr 54.5 19 0.00065 17.9 7.2 59 42-102 8-76 (95)
159 2dnp_A RNA-binding protein 14; 54.0 19 0.00065 17.8 7.1 58 42-101 12-71 (90)
160 1oo0_B CG8781-PA, drosophila Y 53.8 22 0.00074 18.4 5.0 59 42-102 29-97 (110)
161 2khc_A Testis-specific RNP-typ 52.7 13 0.00046 19.5 2.7 58 43-102 44-111 (118)
162 2fy1_A RNA-binding motif prote 52.4 25 0.00085 18.6 5.1 58 43-102 11-77 (116)
163 1p1t_A Cleavage stimulation fa 52.2 22 0.00076 18.0 4.2 58 43-102 12-79 (104)
164 2kn4_A Immunoglobulin G-bindin 51.6 29 0.001 19.2 5.9 59 42-102 73-141 (158)
165 2qfj_A FBP-interacting repress 51.3 34 0.0011 19.8 6.0 58 43-102 32-99 (216)
166 1h2v_Z 20 kDa nuclear CAP bind 51.2 30 0.001 19.2 4.4 58 42-101 42-109 (156)
167 2adc_A Polypyrimidine tract-bi 51.2 36 0.0012 20.2 6.4 60 42-102 37-101 (229)
168 2kt5_A RNA and export factor-b 50.6 27 0.00092 18.5 4.9 58 43-102 39-105 (124)
169 2dnq_A RNA-binding protein 4B; 50.6 22 0.00076 17.6 6.0 59 42-102 11-71 (90)
170 1sjq_A Polypyrimidine tract-bi 50.3 27 0.00094 18.5 5.6 59 42-102 19-83 (105)
171 2ku7_A MLL1 PHD3-CYP33 RRM chi 48.8 30 0.001 18.6 4.6 58 43-102 67-134 (140)
172 2kxn_B Transformer-2 protein h 48.7 31 0.0011 18.7 8.2 60 41-102 48-117 (129)
173 2cqg_A TDP-43, TAR DNA-binding 48.6 26 0.00089 17.8 3.8 57 42-101 18-83 (103)
174 1x4f_A Matrin 3; structural ge 48.5 30 0.001 18.5 4.1 61 41-102 27-93 (112)
175 2hzc_A Splicing factor U2AF 65 48.5 23 0.0008 17.2 5.9 58 43-102 10-81 (87)
176 2d9p_A Polyadenylate-binding p 48.3 26 0.0009 17.8 6.2 60 41-102 17-84 (103)
177 3ns6_A Eukaryotic translation 47.8 27 0.00093 17.8 6.1 60 43-102 10-84 (100)
178 2zjr_K 50S ribosomal protein L 47.7 9.6 0.00033 20.9 1.6 26 81-106 70-95 (116)
179 2xs2_A Deleted in azoospermia- 47.6 8.6 0.00029 19.7 1.4 56 43-101 13-76 (102)
180 2dit_A HIV TAT specific factor 47.5 22 0.00075 18.6 3.1 48 55-102 40-93 (112)
181 3p5t_L Cleavage and polyadenyl 47.5 26 0.00088 17.4 4.3 58 43-102 5-74 (90)
182 2ki2_A SS-DNA binding protein 47.3 22 0.00077 17.5 3.0 56 44-102 6-71 (90)
183 2do0_A HnRNP M, heterogeneous 47.0 29 0.00099 18.0 3.5 58 42-101 18-84 (114)
184 2cpy_A RNA-binding protein 12; 46.8 14 0.00049 19.4 2.2 59 42-102 18-85 (114)
185 1x5t_A Splicing factor 3B subu 46.8 20 0.00068 17.9 2.7 57 43-101 9-76 (96)
186 2dnh_A Bruno-like 5, RNA bindi 46.6 29 0.00098 17.7 4.7 57 42-100 18-83 (105)
187 3md3_A Nuclear and cytoplasmic 46.2 34 0.0012 18.7 3.9 56 44-101 5-69 (166)
188 2e5g_A U6 snRNA-specific termi 46.2 28 0.00095 17.4 5.3 58 43-102 12-73 (94)
189 3pgw_A U1-A; protein-RNA compl 46.0 47 0.0016 20.3 4.8 61 42-102 12-81 (282)
190 2lea_A Serine/arginine-rich sp 45.3 37 0.0013 18.5 6.0 59 42-102 50-118 (135)
191 1gd8_A 50S ribosomal protein L 45.0 9.6 0.00033 21.0 1.3 26 81-106 70-95 (118)
192 2la6_A RNA-binding protein FUS 44.9 30 0.001 17.4 6.2 59 42-102 16-92 (99)
193 3s8s_A Histone-lysine N-methyl 44.8 34 0.0011 18.0 5.2 59 42-102 9-77 (110)
194 1x4c_A Splicing factor, argini 44.6 32 0.0011 17.7 5.6 57 42-100 18-77 (108)
195 1x4a_A Splicing factor, argini 44.3 32 0.0011 17.7 5.2 58 42-101 25-89 (109)
196 1qm9_A Polypyrimidine tract-bi 44.0 44 0.0015 19.1 5.3 59 43-102 7-70 (198)
197 2hgn_A Heterogeneous nuclear r 43.4 42 0.0014 18.6 4.0 57 43-102 50-114 (139)
198 2cpd_A Apobec-1 stimulating pr 43.0 32 0.0011 17.3 4.7 58 42-101 18-79 (99)
199 2ytc_A PRE-mRNA-splicing facto 42.4 30 0.001 16.7 7.0 59 42-102 15-78 (85)
200 2dhg_A TRNA selenocysteine ass 41.7 35 0.0012 17.3 7.5 60 41-102 11-81 (104)
201 2j76_E EIF-4B, EIF4B, eukaryot 41.6 35 0.0012 17.3 4.2 57 43-102 23-89 (100)
202 2cq0_A Eukaryotic translation 40.6 22 0.00074 18.1 2.3 58 42-101 18-85 (103)
203 1why_A Hypothetical protein ri 39.8 37 0.0013 17.0 7.8 56 42-99 20-79 (97)
204 2e5h_A Zinc finger CCHC-type a 38.8 37 0.0013 16.7 6.3 60 41-102 18-87 (94)
205 2jrs_A RNA-binding protein 39; 37.8 44 0.0015 17.3 6.4 59 42-102 29-97 (108)
206 4f02_A Polyadenylate-binding p 37.7 52 0.0018 19.3 3.9 58 43-102 107-172 (213)
207 2div_A TRNA selenocysteine ass 37.5 41 0.0014 16.8 6.7 59 42-102 12-81 (99)
208 1sjr_A Polypyrimidine tract-bi 37.4 61 0.0021 18.8 4.8 49 43-93 50-103 (164)
209 2dis_A Unnamed protein product 37.0 44 0.0015 17.1 7.0 59 42-102 11-83 (109)
210 1wex_A Hypothetical protein (r 37.0 46 0.0016 17.3 5.2 60 41-102 17-82 (104)
211 2f3j_A RNA and export factor b 36.8 61 0.0021 18.6 5.8 49 54-102 101-158 (177)
212 1wi8_A EIF-4B, eukaryotic tran 36.6 44 0.0015 16.9 6.0 57 42-101 18-84 (104)
213 2dhx_A Poly (ADP-ribose) polym 36.6 51 0.0017 17.7 4.6 35 66-100 38-73 (104)
214 3q2s_C Cleavage and polyadenyl 35.8 72 0.0025 19.2 5.1 58 43-102 72-141 (229)
215 2hgl_A HNRPF protein, heteroge 35.2 29 0.001 19.2 2.4 58 43-102 48-116 (136)
216 3dxb_A Thioredoxin N-terminall 34.7 71 0.0024 18.8 5.1 51 52-102 140-204 (222)
217 2cpe_A RNA-binding protein EWS 34.5 50 0.0017 17.0 3.5 57 43-101 19-93 (113)
218 2cq1_A PTB-like protein L; RRM 33.9 52 0.0018 17.0 5.1 60 41-102 17-82 (101)
219 2wbr_A GW182, gawky, LD47780P; 33.8 52 0.0018 17.0 5.2 51 41-93 9-62 (89)
220 2ad9_A Polypyrimidine tract-bi 33.7 59 0.002 17.6 5.9 60 41-102 33-98 (119)
221 2lmi_A GRSF-1, G-rich sequence 33.4 50 0.0017 16.9 3.1 59 42-102 14-83 (107)
222 2dnr_A Synaptojanin-1; RRM dom 32.5 57 0.0019 17.0 4.6 49 53-101 27-76 (91)
223 3r8s_N 50S ribosomal protein L 32.5 19 0.00066 19.9 1.3 26 81-106 70-95 (120)
224 1wwh_A Nucleoporin 35, nucleop 32.4 65 0.0022 17.7 5.5 50 51-100 33-85 (119)
225 3bbo_P Ribosomal protein L17; 31.2 21 0.00072 21.6 1.3 26 81-106 159-184 (205)
226 1x4e_A RNA binding motif, sing 30.9 50 0.0017 15.9 4.5 58 42-101 8-75 (85)
227 1x4d_A Matrin 3; structural ge 30.8 61 0.0021 16.9 5.7 52 41-93 17-71 (102)
228 3d2w_A TAR DNA-binding protein 29.5 58 0.002 16.1 5.6 49 41-91 13-65 (89)
229 2lxi_A RNA-binding protein 10; 29.4 46 0.0016 16.6 2.4 49 54-102 14-74 (91)
230 3kgk_A Arsenical resistance op 29.2 62 0.0021 17.5 2.9 36 59-94 33-69 (110)
231 3zzy_A Polypyrimidine tract-bi 28.8 78 0.0027 17.5 3.8 48 43-92 32-84 (130)
232 1b7f_A Protein (SXL-lethal pro 28.7 76 0.0026 17.3 4.9 56 43-100 93-158 (168)
233 3ktb_A Arsenical resistance op 28.5 65 0.0022 17.3 2.9 35 59-93 36-71 (106)
234 3tyt_A Heterogeneous nuclear r 28.2 95 0.0032 18.2 4.7 50 42-92 7-60 (205)
235 2g4b_A Splicing factor U2AF 65 26.7 86 0.0029 17.2 4.2 57 43-101 8-78 (172)
236 2e5j_A Methenyltetrahydrofolat 26.4 68 0.0023 16.0 4.7 58 43-102 23-85 (97)
237 2e44_A Insulin-like growth fac 26.3 67 0.0023 15.8 6.3 59 42-102 18-83 (96)
238 2dnn_A RNA-binding protein 12; 26.2 77 0.0026 16.6 3.0 57 43-102 20-84 (109)
239 1ufw_A Synaptojanin 2; RNP dom 26.1 79 0.0027 16.6 3.3 50 52-101 35-85 (95)
240 2dha_A FLJ20171 protein; RRM d 26.0 84 0.0029 16.9 3.7 58 43-102 27-96 (123)
241 2ek1_A RNA-binding protein 12; 25.0 17 0.00058 18.1 0.2 58 43-102 19-86 (95)
242 1wel_A RNA-binding protein 12; 24.9 84 0.0029 16.5 4.2 59 42-102 28-95 (124)
243 2cpx_A Hypothetical protein FL 24.5 81 0.0028 16.2 5.2 60 41-102 27-96 (115)
244 1x5o_A RNA binding motif, sing 23.6 85 0.0029 16.1 3.7 56 42-99 28-92 (114)
245 1wf0_A TDP-43, TAR DNA-binding 23.5 75 0.0026 15.4 3.1 48 43-92 9-60 (88)
246 1x4h_A RNA-binding protein 28; 22.9 86 0.0029 15.9 7.6 51 41-93 17-76 (111)
247 2db1_A Heterogeneous nuclear r 22.7 30 0.001 18.3 0.9 58 43-102 21-89 (118)
248 2dgp_A Bruno-like 4, RNA bindi 22.2 87 0.003 15.7 5.8 50 42-93 16-74 (106)
249 2cq2_A Hypothetical protein LO 21.8 1E+02 0.0036 16.5 5.5 51 41-93 27-82 (114)
250 1fxl_A Paraneoplastic encephal 21.4 1.1E+02 0.0037 16.5 5.5 58 43-102 92-159 (167)
251 2yh0_A Splicing factor U2AF 65 21.0 1.1E+02 0.0039 17.1 3.3 57 43-101 8-78 (198)
252 2dgw_A Probable RNA-binding pr 20.9 81 0.0028 15.3 2.4 57 42-101 13-77 (91)
253 1p3q_Q VPS9P, vacuolar protein 20.8 72 0.0025 14.9 1.9 17 82-98 26-42 (54)
254 1wgl_A TOLL-interacting protei 20.5 73 0.0025 15.0 1.9 16 82-97 23-38 (59)
255 2hgm_A HNRPF protein, heteroge 20.1 1.2E+02 0.0041 16.5 5.6 58 42-102 45-112 (126)
256 1j3m_A The conserved hypotheti 20.1 1.1E+02 0.0036 16.6 2.8 23 75-97 50-72 (129)
No 1
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.69 E-value=5.2e-17 Score=108.62 Aligned_cols=78 Identities=32% Similarity=0.471 Sum_probs=68.3
Q ss_pred ccCCCCCCCCCCCCceeeecccc-CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCcc
Q 043968 28 FSRKLNLPPGPTPWPFIGNLNLI-GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPALL 105 (107)
Q Consensus 28 ~~~~~~~~p~~~~~p~~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~~ 105 (107)
.+++.+.||||+++|++||++++ ..+.+..+.+++++||+++++++|+.+.++++||+.+++||.++...|++||...
T Consensus 5 ~ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~ 83 (479)
T 3tbg_A 5 TSSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVP 83 (479)
T ss_dssp ----CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCG
T ss_pred CCCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchH
Confidence 33444678999999999999998 5788889999999999999999999999999999999999999999999998654
No 2
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.57 E-value=7.6e-15 Score=98.77 Aligned_cols=75 Identities=23% Similarity=0.473 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCceeeeccccC--CChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 30 RKLNLPPGPTPWPFIGNLNLIG--PLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 30 ~~~~~~p~~~~~p~~g~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
+..+.||||+++|++||++++. .+.+..+.++.++||+++++++|+.+.++++||+.++++|.++...|++||..
T Consensus 5 ~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~ 81 (494)
T 3swz_A 5 TGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQM 81 (494)
T ss_dssp -------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCC
T ss_pred CCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCc
Confidence 3456789999999999999884 35788999999999999999999999999999999999999999999999875
No 3
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.55 E-value=4.6e-15 Score=99.48 Aligned_cols=74 Identities=26% Similarity=0.335 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhc-cccccCCCCc
Q 043968 31 KLNLPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTH-DISFASRPAL 104 (107)
Q Consensus 31 ~~~~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~-~~~~~~r~~~ 104 (107)
+.+.+|||+++|++||+.++..+.+..+.+++++||+++++++|+.+.++++||+.++++|.++ ...|++|+..
T Consensus 12 k~~~~PGP~~~PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~ 86 (485)
T 3nxu_A 12 KKLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF 86 (485)
T ss_dssp HHHTCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCC
T ss_pred hhCCCCCCCCcCeecCcHHhhcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccc
Confidence 3456999999999999999977889999999999999999999999999999999999999887 6788888754
No 4
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.55 E-value=9e-15 Score=98.45 Aligned_cols=76 Identities=32% Similarity=0.685 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCcc
Q 043968 30 RKLNLPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPALL 105 (107)
Q Consensus 30 ~~~~~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~~ 105 (107)
+..+.+|||+++|++||+.++..+++..+.+++++||+++++++|+.+.++++||+.+++++.++...|++||..+
T Consensus 6 ~~~~~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~ 81 (507)
T 3pm0_A 6 SSKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFA 81 (507)
T ss_dssp ----------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCH
T ss_pred CCCCCCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcch
Confidence 3456789999999999999998889999999999999999999999999999999999999998888999988653
No 5
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.54 E-value=1.8e-14 Score=96.37 Aligned_cols=76 Identities=34% Similarity=0.467 Sum_probs=66.9
Q ss_pred cCCCCCCCCCCCCceeeecccc-CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 29 SRKLNLPPGPTPWPFIGNLNLI-GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 29 ~~~~~~~p~~~~~p~~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
+++.+.||||+++|++||+.++ ..+++..+.+++++||+++++++|+.+.++++||+.++++|.++...|++|+..
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~ 82 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDL 82 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCC
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCC
Confidence 3445679999999999999998 578899999999999999999999999999999999999999988889988754
No 6
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.51 E-value=1.7e-14 Score=97.06 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCceeeeccccC----CChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 31 KLNLPPGPTPWPFIGNLNLIG----PLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 31 ~~~~~p~~~~~p~~g~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
+.+.+|||+++|++||++++. .+....+.+++++||+++++++|+.+.++++||+.++++|+++ .|++|+..
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~~--~~~~r~~~ 118 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKHN--HYSSRFGS 118 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHSG--GGCCCCCC
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhcC--CCCCcchh
Confidence 456899999999999998873 2455678899999999999999999999999999999999643 68887653
No 7
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.48 E-value=8.7e-14 Score=93.83 Aligned_cols=76 Identities=32% Similarity=0.684 Sum_probs=66.8
Q ss_pred cCCCCCCCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 29 SRKLNLPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 29 ~~~~~~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
.+..+.+|||+++|++|++.++..+++..+.+++++||+++++++|+.+.++++||+.+++++.++...|++|+..
T Consensus 12 ~~~lp~~PgP~~~p~~G~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~ 87 (495)
T 2hi4_A 12 PKGLKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDL 87 (495)
T ss_dssp CTTCBCCCCCCCBTTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCC
T ss_pred CCCCCCCCCCCCCcceeeHHhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCc
Confidence 3344556999999999999888778889999999999999999999999999999999999998887789888743
No 8
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.42 E-value=4.8e-13 Score=89.80 Aligned_cols=72 Identities=32% Similarity=0.497 Sum_probs=64.7
Q ss_pred CCCCCCCCCCceeeecccc-CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 32 LNLPPGPTPWPFIGNLNLI-GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 32 ~~~~p~~~~~p~~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
.+.+|||+++|++||+.++ ..+++..+.+++++||+++++++|+.+.++++||+.+++|+.++...|++|+.
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~ 81 (476)
T 1po5_A 9 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGK 81 (476)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECC
T ss_pred CCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCC
Confidence 3578999999999999988 67889999999999999999999999999999999999999877778887764
No 9
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.42 E-value=2.1e-13 Score=91.61 Aligned_cols=72 Identities=33% Similarity=0.461 Sum_probs=59.2
Q ss_pred ccCCCCCCCCCCCCceeeecccc-CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCcc
Q 043968 28 FSRKLNLPPGPTPWPFIGNLNLI-GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPALL 105 (107)
Q Consensus 28 ~~~~~~~~p~~~~~p~~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~~ 105 (107)
.++..+.||||++ +.++ ..+++..+.+++++||+++++++|+.+.++++||+.+++++.++...|++||...
T Consensus 24 ~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~ 96 (496)
T 3qz1_A 24 KLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIP 96 (496)
T ss_dssp -----CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCT
T ss_pred hccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcc
Confidence 3445577888876 4444 5789999999999999999999999999999999999999999888999998654
No 10
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.42 E-value=1.4e-13 Score=92.01 Aligned_cols=78 Identities=28% Similarity=0.442 Sum_probs=65.4
Q ss_pred HhhccCCCCCCCCCCCCceeeecccc-----CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhcccccc
Q 043968 25 RRQFSRKLNLPPGPTPWPFIGNLNLI-----GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFA 99 (107)
Q Consensus 25 ~~~~~~~~~~~p~~~~~p~~g~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~ 99 (107)
++...++.+.+|||+++|++||+.++ ..+.+..+.+++++||+++++++|+.+.++++||+.+++|+.++ ..|+
T Consensus 16 ~~~~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~ 94 (482)
T 3k9v_A 16 TDGETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHP 94 (482)
T ss_dssp ---CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSC
T ss_pred cccccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCC
Confidence 33445567789999999999999887 13678889999999999999999999999999999999999874 5788
Q ss_pred CCCC
Q 043968 100 SRPA 103 (107)
Q Consensus 100 ~r~~ 103 (107)
+|+.
T Consensus 95 ~r~~ 98 (482)
T 3k9v_A 95 QRLE 98 (482)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8864
No 11
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.40 E-value=1.2e-13 Score=92.39 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=63.5
Q ss_pred CCCCCCCC-CceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 33 NLPPGPTP-WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 33 ~~~p~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+.||++++ +|++||++++.++++.++.+++++||+++++++++.+.++++||+.+++++.++...|+.|+.
T Consensus 11 ~~PP~~~~~lP~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~ 82 (461)
T 3ld6_A 11 KSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDV 82 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHH
T ss_pred CCCCCCCCCcCeeeeHHHhhhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcc
Confidence 45777764 899999999988899999999999999999999999999999999999999988888877653
No 12
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.39 E-value=5.9e-13 Score=89.29 Aligned_cols=71 Identities=41% Similarity=0.616 Sum_probs=58.4
Q ss_pred CCCCCCCCCceeeecccc-CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 33 NLPPGPTPWPFIGNLNLI-GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 33 ~~~p~~~~~p~~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+.+|||+++|++|++.++ ..+++..+.+++++||+++++++|+.+.++++||+.+++|+.++...|++|+.
T Consensus 11 ~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~ 82 (477)
T 1r9o_A 11 KLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGI 82 (477)
T ss_dssp BCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECC
T ss_pred CCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCc
Confidence 568999999999999988 45678889999999999999999998999999999999999877778887764
No 13
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.37 E-value=1.3e-12 Score=87.72 Aligned_cols=71 Identities=34% Similarity=0.586 Sum_probs=64.0
Q ss_pred CCCCCCCCCceeeecccc-CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 33 NLPPGPTPWPFIGNLNLI-GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 33 ~~~p~~~~~p~~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+.+|||+++|++||+.++ ..+++..+.+++++||+++++++|+.+.++++||+.+++|+.++...|++|+.
T Consensus 10 ~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~ 81 (476)
T 2fdv_A 10 KLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGE 81 (476)
T ss_dssp BCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECC
T ss_pred CCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCC
Confidence 568999999999999988 57789999999999999999999999999999999999999877778887764
No 14
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.33 E-value=5.2e-13 Score=88.66 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=64.8
Q ss_pred CCCCCCCC-CceeeeccccCCChHHHHHHHHHHcC-CeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 33 NLPPGPTP-WPFIGNLNLIGPLPHVSIHSLSQKYG-PLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 33 ~~~p~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
+.||++++ +|++||+.++..+.+..+.+++++|| +++++++++.+.++++||+.+++++.++...|++|+..
T Consensus 3 ~~PPg~p~~~P~iG~~~~~~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~ 76 (450)
T 3gw9_A 3 KLPPVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVY 76 (450)
T ss_dssp SCCCBCCCCSTTTBTHHHHHHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGG
T ss_pred CCCCCCCCCcchhccHHHHccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhH
Confidence 56888665 99999999887788999999999999 99999999999999999999999999888888887643
No 15
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.33 E-value=1.6e-12 Score=87.41 Aligned_cols=73 Identities=36% Similarity=0.610 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCceeeeccccC-CC--hHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 31 KLNLPPGPTPWPFIGNLNLIG-PL--PHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 31 ~~~~~p~~~~~p~~g~~~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
..+.+|||+++|++|++.++. .+ ++..+.+++++||+++++++|+.+.++++||+.+++++.++...|++|+.
T Consensus 10 ~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~ 85 (481)
T 3czh_A 10 PMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPC 85 (481)
T ss_dssp --CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCC
T ss_pred CCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCC
Confidence 345689999999999998873 22 88899999999999999999999999999999999999988778988874
No 16
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.32 E-value=8.2e-13 Score=88.23 Aligned_cols=71 Identities=21% Similarity=0.383 Sum_probs=61.7
Q ss_pred CCCCCCCC-CCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccC
Q 043968 30 RKLNLPPG-PTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFAS 100 (107)
Q Consensus 30 ~~~~~~p~-~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~ 100 (107)
+..+.||| |+++|++||++++..++..++.+++++||+++++++++.+.+++++|+.+++++.++...++.
T Consensus 8 ~~~~~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~ 79 (461)
T 3i3k_A 8 AGVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNA 79 (461)
T ss_dssp --CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEES
T ss_pred CCCCCCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhcccccccc
Confidence 34567898 788999999999877889999999999999999999999999999999999999877655543
No 17
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.31 E-value=8.2e-13 Score=88.88 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=64.6
Q ss_pred hccCCCCCCCCCCC-CceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhcc-ccccCC
Q 043968 27 QFSRKLNLPPGPTP-WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHD-ISFASR 101 (107)
Q Consensus 27 ~~~~~~~~~p~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~-~~~~~r 101 (107)
..++..+.||||++ +|++||++++..+++.++.+++++||+++++++++.+.++++||+.+++++.++. ..++++
T Consensus 7 ~~~~~~~~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~ 83 (491)
T 3v8d_A 7 SRRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKF 83 (491)
T ss_dssp CCCCCTTSCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHH
T ss_pred hhccCCCCCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHH
Confidence 34445568999998 6999999999999999999999999999999999999999999999999997764 234443
No 18
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.29 E-value=9.8e-13 Score=88.58 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=60.2
Q ss_pred cCCCCCCCCCCC-CceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccc
Q 043968 29 SRKLNLPPGPTP-WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDI 96 (107)
Q Consensus 29 ~~~~~~~p~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~ 96 (107)
++..+.+|||++ +|++||++++..+++..+.+++++||+++++++|+.+.++++||+.+++++.++..
T Consensus 14 ~~~~~~PPgp~~~~P~iG~~~~~~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~ 82 (498)
T 3b6h_A 14 TRRPGEPPLDLGSIPWLGYALDFGKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRT 82 (498)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTT
T ss_pred ccCCCCCCCCCCCCcchhhHHHhccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccc
Confidence 444567899988 89999999886678999999999999999999999999999999999999977654
No 19
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.25 E-value=1.3e-11 Score=82.50 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=62.6
Q ss_pred CCCCC-CCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 33 NLPPG-PTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 33 ~~~p~-~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+.+|+ |+++|++||+.++..+++..+.+++++||+++++++++.+.++++||+.+++++.++...|+.++.
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~ 75 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKA 75 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTS
T ss_pred CCCCCCCCCCCCccCHHHHhhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccc
Confidence 46787 778999999998888899999999999999999999999999999999999999877667877764
No 20
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.22 E-value=3.9e-12 Score=85.39 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=59.1
Q ss_pred cCCCCCCCCCCC-CceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhcc
Q 043968 29 SRKLNLPPGPTP-WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHD 95 (107)
Q Consensus 29 ~~~~~~~p~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~ 95 (107)
++..+.+|||++ +|++||+.++..+++..+.+++++||+++++++|+.+.++++||+.++++++++.
T Consensus 9 ~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~ 76 (491)
T 3dax_A 9 RRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGK 76 (491)
T ss_dssp CCCTTCCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCT
T ss_pred ccCCCCCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCc
Confidence 333456788887 8999999999778899999999999999999999999999999999999997664
No 21
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.20 E-value=6.3e-12 Score=84.10 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=59.8
Q ss_pred cCCCCCCCCCCC-CceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhcc
Q 043968 29 SRKLNLPPGPTP-WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHD 95 (107)
Q Consensus 29 ~~~~~~~p~~~~-~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~ 95 (107)
++..+.+|||++ +|++||+.++..+++..+.+++++||+++++++|+.+.++++||+.+++++.++.
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~ 81 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVA 81 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTT
T ss_pred ccCCCCCCCCCCCcchHHhHHHHhhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCcc
Confidence 444567899887 8999999988778899999999999999999999999999999999999997664
No 22
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.19 E-value=9.4e-12 Score=83.00 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=60.0
Q ss_pred hccCCCCCCCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCC
Q 043968 27 QFSRKLNLPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 27 ~~~~~~~~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
...++.+.+|||+++|++|++.++..++. .+.+++++||+++++++++.+.++++||+.+++++.++...|+++
T Consensus 6 ~~~~~~~~pPgp~~~P~iG~~~~~~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~ 79 (444)
T 2ve3_A 6 TNLNSLPIPPGDFGLPWLGETLNFLNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQAT 79 (444)
T ss_dssp ---CCCCCCCCCCCBTTTBTHHHHHHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEE
T ss_pred CCCCCCCCCCCCCCCCccccHHHHhcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccc
Confidence 33455678999999999999988744455 778999999999999988888999999999999998876666643
No 23
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.12 E-value=6e-11 Score=79.59 Aligned_cols=75 Identities=27% Similarity=0.282 Sum_probs=60.8
Q ss_pred ccCCCCCCCCCCCCceeeecccc-----CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 28 FSRKLNLPPGPTPWPFIGNLNLI-----GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 28 ~~~~~~~~p~~~~~p~~g~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
..++.+.+|||+..++. ++.++ ..+.+..+.+++++||+++++++|+.+.++++||+.+++|+.++. .|++|+
T Consensus 4 ~~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~ 81 (487)
T 3n9y_A 4 SPRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERF 81 (487)
T ss_dssp CCBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCC
T ss_pred CCCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCC
Confidence 44566789999877654 65555 136788899999999999999999999999999999999997664 788887
Q ss_pred Cc
Q 043968 103 AL 104 (107)
Q Consensus 103 ~~ 104 (107)
..
T Consensus 82 ~~ 83 (487)
T 3n9y_A 82 LI 83 (487)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 24
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.09 E-value=4e-11 Score=80.31 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=57.7
Q ss_pred CCCCCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCC
Q 043968 32 LNLPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 32 ~~~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
...+|||+++|++||+.++..++..++.++++ ||+++++++++.+.++++||+.+++++.++ .|.++
T Consensus 22 ~eppPgP~~~P~iG~~~~~~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~ 88 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRLARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIA 88 (467)
T ss_dssp CBCCEECCCCSTTHHHHHHHHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC---
T ss_pred CCCCCCCCCCCcccchHHhccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--Ccccc
Confidence 34688899999999999987788999999988 999999999999999999999999999876 56333
No 25
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.08 E-value=3e-10 Score=76.25 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=55.5
Q ss_pred CCCCCCCCCceeeeccccC-CChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhh
Q 043968 33 NLPPGPTPWPFIGNLNLIG-PLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKT 93 (107)
Q Consensus 33 ~~~p~~~~~p~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~ 93 (107)
+.+|||+++|++||+.++. .+++..+.+++++||+++++++++.+.++++||+.+++++.+
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~ 64 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE 64 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh
Confidence 5689999999999999884 578888999999999999999998899999999999999964
No 26
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.05 E-value=7.4e-11 Score=78.77 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCceeeecc-ccCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 30 RKLNLPPGPTPWPFIGNLN-LIGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 30 ~~~~~~p~~~~~p~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+..+.+|||+++|++|++. .+..++...+.++ ++||+++++++ ++.+.++++||+.+++++.++ .|++|+.
T Consensus 23 ~~~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~ 95 (436)
T 2cd8_A 23 RTQQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWR 95 (436)
T ss_dssp -----------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGG
T ss_pred hhccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccc
Confidence 3456799999999999976 4456788899999 89999999998 778899999999999999876 5777753
No 27
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=98.80 E-value=1e-09 Score=72.21 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=54.6
Q ss_pred CCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 38 PTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 38 ~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
....|++||+.++..+++..+.+++++||++++ ++++.+.++++||+.+++++.++ .|++++
T Consensus 4 ~~~~p~iGnl~~~~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~ 65 (389)
T 1n97_A 4 LSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKAT 65 (389)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCS
T ss_pred cccccccccHHHHhhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCCh
Confidence 345689999988866788999999999999999 99999999999999999999876 787775
No 28
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=98.65 E-value=4.8e-08 Score=64.38 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=48.9
Q ss_pred CCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcC-CcCEEEecCHHHHHHHHhhcc-ccccCCCC
Q 043968 35 PPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-LSPVVVGSSAEVAELLLKTHD-ISFASRPA 103 (107)
Q Consensus 35 ~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~~~~p~~~~~vl~~~~-~~~~~r~~ 103 (107)
+|||+++|++|+..+ +++..+.++. +||+++++.++ +.+.+++++++.++++|.++. ..+++|+.
T Consensus 3 pPGp~~~P~~g~~~~---~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~ 69 (404)
T 1jfb_A 3 ASGAPSFPFSRASGP---EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQG 69 (404)
T ss_dssp ---CCBSSCCCSSTT---SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTT
T ss_pred CCCCCCCCCCCCcCC---CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccC
Confidence 799999999999764 7777888886 59999999874 566777899999999997763 34555554
No 29
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=98.54 E-value=4.7e-08 Score=65.77 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=54.2
Q ss_pred ccCCCCCCCCCCCCceeeecccc-----CCChHHHHHHHHHHcCC-eeEEEcCCcCE-------EEecCHHHHHHHHhh
Q 043968 28 FSRKLNLPPGPTPWPFIGNLNLI-----GPLPHVSIHSLSQKYGP-LMHLKFGLSPV-------VVGSSAEVAELLLKT 93 (107)
Q Consensus 28 ~~~~~~~~p~~~~~p~~g~~~~~-----~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-------v~~~~p~~~~~vl~~ 93 (107)
...+.+.|||+.++|++|++.++ ..++..++.++.++||+ +|++++++.+. +++.+++..+.++.+
T Consensus 23 ~~~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~ 101 (495)
T 3dsk_A 23 KDLPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDV 101 (495)
T ss_dssp -CCCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCT
T ss_pred CCCCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeeccc
Confidence 34456789999999999999877 47899999999999999 99999988887 667777776666544
No 30
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=98.53 E-value=1.1e-07 Score=62.97 Aligned_cols=64 Identities=23% Similarity=0.266 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEE----c-CC-cCEEEecCHHHHHHHH-hhccccccCCC
Q 043968 31 KLNLPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLK----F-GL-SPVVVGSSAEVAELLL-KTHDISFASRP 102 (107)
Q Consensus 31 ~~~~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~----~-~~-~~~v~~~~p~~~~~vl-~~~~~~~~~r~ 102 (107)
..+.+|||+++|+. +..+++..+.++ ++||++++++ + ++ .+.++++||+.+++++ .++ .|++++
T Consensus 8 ~~~lppgp~~~p~~-----~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~ 78 (406)
T 1ued_A 8 VAPLLREPANFQLR-----TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRP 78 (406)
T ss_dssp CCCEEECCTTTTCE-----ETTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCC
T ss_pred CCCCcccCcccCCC-----CCCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccccc
Confidence 34567788888865 456788889999 9999999999 7 78 8999999999999999 544 255554
No 31
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=98.47 E-value=7.1e-08 Score=63.78 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=48.1
Q ss_pred CCCCCCCceeeeccccCCChHHHHHHHHHHc-CCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCC
Q 043968 35 PPGPTPWPFIGNLNLIGPLPHVSIHSLSQKY-GPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 35 ~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
+||+ |++|++.++..++..++.+++++| |+++++..++.+.+++++|+.++ ++.++ ..|+.+
T Consensus 4 pPg~---P~iG~~~~~~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~ 66 (415)
T 3awm_A 4 TPHT---KGPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFERE 66 (415)
T ss_dssp --------CCCCHHHHHHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECT
T ss_pred CCCC---CccchHHHHHhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccc
Confidence 4554 799999988778889999999999 79999998888899999999987 66554 356554
No 32
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=98.45 E-value=4.5e-07 Score=60.05 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=47.1
Q ss_pred CCCCCCCCceeeeccccCCChHHHHHHHHHHc-CCeeEEEc-CCcCEEEecCHHHHHHHHhhc
Q 043968 34 LPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKY-GPLMHLKF-GLSPVVVGSSAEVAELLLKTH 94 (107)
Q Consensus 34 ~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~ 94 (107)
.+|++++.|.+.....+..+++..+.++ ++| |+++++++ ++.+.++++||+.++++|.++
T Consensus 6 ~~~~~~~~P~~~~~~~~~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 67 (412)
T 2zbx_A 6 TTPQTTDAPAFPSNRSCPYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP 67 (412)
T ss_dssp --CCCCSSCBSSCCCSSTTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT
T ss_pred CCCCCCCCCCCCCCchhccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc
Confidence 4566666665533344567888899999 788 99999998 888999999999999999765
No 33
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=98.38 E-value=1.4e-07 Score=62.40 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=46.2
Q ss_pred CCceeeeccccCCChHHHHHHHHHHcC-CeeEEEcCCcCEEEecCHHHHHHHHh
Q 043968 40 PWPFIGNLNLIGPLPHVSIHSLSQKYG-PLMHLKFGLSPVVVGSSAEVAELLLK 92 (107)
Q Consensus 40 ~~p~~g~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~v~~~~p~~~~~vl~ 92 (107)
+.|++|++.++..++..++.+++++|| +++++++++.+.+++++|+.++.++.
T Consensus 7 g~P~lG~~~~~~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~~ 60 (417)
T 1izo_A 7 HDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYD 60 (417)
T ss_dssp BCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTC
T ss_pred CCCccchHHHHhhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHhc
Confidence 348999999887788889999999998 89999988889999999999985543
No 34
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=98.33 E-value=5.1e-07 Score=59.76 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=46.1
Q ss_pred HHHHHhhccCCCCCCCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccC
Q 043968 21 LFLFRRQFSRKLNLPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFAS 100 (107)
Q Consensus 21 ~~~~~~~~~~~~~~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~ 100 (107)
.++.+++...+.+.+|||+. ..+++..+.++++ ||++ |.++.+.++++||+.++++|.++ ..|++
T Consensus 7 ~~~iyr~~~~pl~~~PGp~~----------~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~ 71 (411)
T 2jjn_A 7 TTCCARRTLTTIDEVPGMAD----------ETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSS 71 (411)
T ss_dssp ----------CCCSCCCSSC----------HHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEES
T ss_pred hHHhhhcccCCCCCCCCccc----------ccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccC
Confidence 33455566667777888762 2467788888876 9998 67777899999999999999765 47888
Q ss_pred CCC
Q 043968 101 RPA 103 (107)
Q Consensus 101 r~~ 103 (107)
|+.
T Consensus 72 ~~~ 74 (411)
T 2jjn_A 72 DPT 74 (411)
T ss_dssp CGG
T ss_pred ccc
Confidence 864
No 35
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=98.22 E-value=2.7e-06 Score=56.62 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhc
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTH 94 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~ 94 (107)
+..++..+.+++++||+++++++|+.+.++++||+.+++++.++
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~ 52 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST 52 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc
Confidence 35678889999999999999999999999999999999999653
No 36
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=98.22 E-value=3e-06 Score=55.97 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=44.9
Q ss_pred cCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 50 IGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+..+++..+.++ ++||+++++++++.+.++++||+.++++|.++ .|++|+.
T Consensus 12 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~ 62 (404)
T 1z8o_A 12 FHVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPK 62 (404)
T ss_dssp GTSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTT
T ss_pred cccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Ccccccc
Confidence 457889999999 89999999999989999999999999999876 5877764
No 37
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=98.21 E-value=4.2e-06 Score=55.80 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=49.9
Q ss_pred CCCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEE--------cCCcCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 34 LPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLK--------FGLSPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 34 ~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
.|+.+.+..+++....-..+++..+.++ ++||++++.. +|+.+.+++++++.++++|+++ ..|++++..
T Consensus 19 ~p~~~~~~~~~~~~~~~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~ 95 (433)
T 3ivy_A 19 SPNLPPGFDFTDPAIYAERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYENG 95 (433)
T ss_dssp -CCCCTTCCTTCHHHHTTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTTTC
T ss_pred CCCCCCCCCCCCHHHhhcCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCccc
Confidence 3444545544443322235689999999 7799999998 5557899999999999999654 678887754
No 38
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=98.20 E-value=3.3e-06 Score=55.85 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=51.0
Q ss_pred CCCCCCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEc-CCcC-EEEecCHHHHHHHHhhccccccCCCC
Q 043968 32 LNLPPGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKF-GLSP-VVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 32 ~~~~p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~-~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
.+.+|+++..|+.++ ...+++..+++++ +||+++++++ ++.+ .++++||+.++++|.+ ..|++++.
T Consensus 7 ~~~~~~~~~~p~~~~---~~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~ 74 (406)
T 1s1f_A 7 SQAVPPVRDWPAVDL---PGSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAV 74 (406)
T ss_dssp -CCSCCEEECCCCCC---CTTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTT
T ss_pred hhhccCCCCCCCCcc---cccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcC
Confidence 356777777776655 3577888888885 6899999996 5666 9999999999999976 36777654
No 39
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=98.18 E-value=9.7e-07 Score=58.69 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=47.4
Q ss_pred eeeeccccC-----CChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 43 FIGNLNLIG-----PLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 43 ~~g~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
++|++.+.. .+++..+.++.+ +|++++++. |+.+.+++++++.++++|+++ ..|++|+.
T Consensus 11 ~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~ 75 (428)
T 1cpt_A 11 IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEG 75 (428)
T ss_dssp HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccc
Confidence 788755442 357788888877 699999998 678999999999999999654 47888875
No 40
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=98.18 E-value=2.7e-06 Score=56.26 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=40.5
Q ss_pred cccCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhc
Q 043968 48 NLIGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTH 94 (107)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~ 94 (107)
..+..+++..+.++ ++||+++++++ |+.+.++++||+.++++|.++
T Consensus 20 ~~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 66 (408)
T 3abb_A 20 RTCPYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP 66 (408)
T ss_dssp CSSTTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT
T ss_pred cccccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC
Confidence 34567888899999 88999999998 888999999999999999765
No 41
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=98.15 E-value=4.2e-06 Score=55.13 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=46.1
Q ss_pred cCCChHHHHHHHHHHc--CCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCcc
Q 043968 50 IGPLPHVSIHSLSQKY--GPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPALL 105 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~~ 105 (107)
+..+++..+.+++++| |++++++.++ +.++++||+.+++++ ++...|++|+...
T Consensus 17 ~~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~ 72 (398)
T 4fb2_A 17 PDGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTF 72 (398)
T ss_dssp TTSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSS
T ss_pred hhcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccc
Confidence 4578999999999999 9999999975 589999999999999 4456888877643
No 42
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=98.14 E-value=4.7e-06 Score=55.23 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=44.7
Q ss_pred cCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 50 IGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+..+++..+.++ ++||+++++++++.+.++++||+.++++|.++. |++|+.
T Consensus 18 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~ 68 (411)
T 3a4g_A 18 FWQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWR 68 (411)
T ss_dssp GTTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGG
T ss_pred hhcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccc
Confidence 457889999999 899999999999889999999999999998763 877753
No 43
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=98.11 E-value=8e-06 Score=53.80 Aligned_cols=51 Identities=18% Similarity=0.051 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
..+++..+.++ ++||++++++.++.+.+++++|+.++++|.++ ..|++++.
T Consensus 12 ~~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~ 62 (404)
T 3ejb_B 12 LKNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPL 62 (404)
T ss_dssp HHCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSS
T ss_pred ccCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCccc
Confidence 46788888888 57999999999999999999999999999876 68888875
No 44
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=98.07 E-value=6.7e-06 Score=54.61 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=50.5
Q ss_pred cCCCCCCCCCCCCcee--eeccc-----cCCChHHHHHHHHHHcC--CeeEEE-cCCcCEEEecCHHHHHHHHhhccccc
Q 043968 29 SRKLNLPPGPTPWPFI--GNLNL-----IGPLPHVSIHSLSQKYG--PLMHLK-FGLSPVVVGSSAEVAELLLKTHDISF 98 (107)
Q Consensus 29 ~~~~~~~p~~~~~p~~--g~~~~-----~~~~~~~~~~~~~~~~g--~~~~~~-~~~~~~v~~~~p~~~~~vl~~~~~~~ 98 (107)
.++.+.+|+|++.|.. +.... +..+++..+.++. +|| ++++++ +| +.++++|++.++++|++ ...|
T Consensus 7 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~f 82 (415)
T 2zwu_A 7 QSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRHF 82 (415)
T ss_dssp ----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTTE
T ss_pred cCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-cccc
Confidence 4455678888887753 43322 2356888888885 789 999998 55 68999999999999964 4578
Q ss_pred cCCC
Q 043968 99 ASRP 102 (107)
Q Consensus 99 ~~r~ 102 (107)
++|+
T Consensus 83 ~~~~ 86 (415)
T 2zwu_A 83 SSEC 86 (415)
T ss_dssp ETTS
T ss_pred CCCc
Confidence 8887
No 45
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=98.06 E-value=3.3e-06 Score=55.25 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=43.3
Q ss_pred CCChHHHHHHHHHHcCCeeEEEcCC----cCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKFGL----SPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~~~----~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
..+++..+.++ ++||++++++.++ .+.++++||+.+++++ ++...|++|+..
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~ 66 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPV 66 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCC
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCccc
Confidence 57788899999 5899999999986 8999999999999999 455788888764
No 46
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=98.05 E-value=6.5e-06 Score=54.36 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=42.7
Q ss_pred cCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 50 IGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
+..+++..+.++ ++||+++++++ |+.+.++++||+.++++|.++ .|++++
T Consensus 17 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~ 67 (403)
T 3aba_A 17 CPFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQV 67 (403)
T ss_dssp STTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCC
T ss_pred cccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccc
Confidence 456778888888 88999999997 889999999999999999764 477764
No 47
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=98.05 E-value=9.3e-07 Score=59.06 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=41.0
Q ss_pred cCCCCCCCCCCCCceeeecccc-----CC-ChHHHHHHHHHHcCC-eeEEEcCCc
Q 043968 29 SRKLNLPPGPTPWPFIGNLNLI-----GP-LPHVSIHSLSQKYGP-LMHLKFGLS 76 (107)
Q Consensus 29 ~~~~~~~p~~~~~p~~g~~~~~-----~~-~~~~~~~~~~~~~g~-~~~~~~~~~ 76 (107)
..+.+.+|||.++|++|+..++ .. ++..++.++.++||+ ++++++++.
T Consensus 5 ~~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~ 59 (473)
T 3dan_A 5 SKPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPG 59 (473)
T ss_dssp GSCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTC
T ss_pred CCCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCC
Confidence 3566789999999999999875 45 788999999999999 999998644
No 48
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=97.94 E-value=1.7e-05 Score=52.42 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=40.9
Q ss_pred ccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhcc
Q 043968 49 LIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHD 95 (107)
Q Consensus 49 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~ 95 (107)
.+..+++..+.++ ++||+++++++++.+.++++||+.+++++.++.
T Consensus 12 ~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~ 57 (408)
T 1odo_A 12 PTGADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD 57 (408)
T ss_dssp TTCTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT
T ss_pred cccCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC
Confidence 4567899999999 999999999998889999999999999997653
No 49
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=97.93 E-value=1.4e-05 Score=53.10 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=42.8
Q ss_pred cCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 50 IGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
+..+++..+.++ ++||+++++++ ++.+.++++||+.+++++.++ .|++++
T Consensus 35 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~ 85 (417)
T 2y5n_A 35 HGLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGP 85 (417)
T ss_dssp SSCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGG
T ss_pred hccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCc
Confidence 356788899999 88999999997 789999999999999999764 366654
No 50
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=97.88 E-value=1.5e-05 Score=52.51 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=42.6
Q ss_pred cCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhcccccc-C-CC
Q 043968 50 IGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTHDISFA-S-RP 102 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~~~~~-~-r~ 102 (107)
+..+++..+.++ ++||+++++++ ++.+.++++||+.++++|.++ .|+ + ++
T Consensus 14 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~ 66 (396)
T 1n40_A 14 RGDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETA 66 (396)
T ss_dssp CSSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGG
T ss_pred cccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCc
Confidence 456788899999 99999999998 788999999999999999765 366 5 44
No 51
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=97.87 E-value=2.8e-05 Score=51.52 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=42.4
Q ss_pred CCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
..+++..+.++ ++||+++++++ ++.+.++++||+.+++++.++ .|++++.
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~ 75 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHP 75 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCS
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCcc
Confidence 46778889999 88999999997 788999999999999999764 3666554
No 52
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=97.86 E-value=3.2e-05 Score=51.47 Aligned_cols=50 Identities=8% Similarity=-0.009 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHHcCCeeEEEcC--CcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKFG--LSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
..+++..+.++.+ ||+++++++| +.+.++++||+.++++|.++ .|++|+.
T Consensus 19 ~~~p~~~~~~l~~-~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~ 70 (425)
T 2z3t_A 19 IADPYPVYRRYRE-AAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNAR 70 (425)
T ss_dssp HHCCHHHHHHHHH-HCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCC
T ss_pred hcChHHHHHHHHh-cCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccc
Confidence 3577888888865 9999999987 77899999999999999765 7888763
No 53
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=97.84 E-value=4.1e-05 Score=50.71 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=40.7
Q ss_pred ccCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhcc
Q 043968 49 LIGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTHD 95 (107)
Q Consensus 49 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~ 95 (107)
.+..+++..+.++ ++||+++++++ ++.+.++++||+.++++|.++.
T Consensus 14 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~ 60 (411)
T 1gwi_A 14 PFVTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR 60 (411)
T ss_dssp TTCSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT
T ss_pred cccCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc
Confidence 4567889999999 89999999998 8889999999999999997653
No 54
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=97.82 E-value=3.9e-05 Score=50.91 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=41.3
Q ss_pred cCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 50 IGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
+..+++..+.++ ++||++++ + ++.+.++++||+.++++|.++. |++|+
T Consensus 24 ~~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~ 71 (419)
T 1q5d_A 24 YAEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSR 71 (419)
T ss_dssp TTTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCG
T ss_pred hhhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccc
Confidence 357889999988 68999999 6 6778999999999999998764 88887
No 55
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=97.81 E-value=2.7e-05 Score=51.66 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=42.9
Q ss_pred cCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 50 IGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
+..+++..+.++. +||+++++++ |+.+.++++||+.++++|.++ .|++|+
T Consensus 20 ~~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~ 70 (413)
T 2z36_A 20 CPFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDK 70 (413)
T ss_dssp BTTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCT
T ss_pred cccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCc
Confidence 4567888899887 6899999997 888999999999999999863 587775
No 56
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=97.74 E-value=6.1e-05 Score=49.88 Aligned_cols=50 Identities=10% Similarity=0.035 Sum_probs=43.1
Q ss_pred cCCChHHHHHHHHHHcCCeeEEEcC-CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 50 IGPLPHVSIHSLSQKYGPLMHLKFG-LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
+..+++..+.+++++ |++++++++ +.+.++++||+.++++|.++ .|++++
T Consensus 27 ~~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~ 77 (417)
T 3tyw_A 27 CPFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADI 77 (417)
T ss_dssp STTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCS
T ss_pred cccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCC
Confidence 357889999999998 999999987 48899999999999999876 677654
No 57
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=97.70 E-value=6e-05 Score=50.33 Aligned_cols=50 Identities=10% Similarity=-0.031 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 52 PLPHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 52 ~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
.+++..+.++. +||++++++.+ +.+.++++||+.++++|.++ ..|++|+.
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~ 100 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPN 100 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSC
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccc
Confidence 45777888885 68999999986 66899999999999999875 47888874
No 58
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=97.66 E-value=4.9e-05 Score=50.95 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHcCCee--EEE-cCCcCEEEecCHHHHHHHHhhccccccCCCCcc
Q 043968 54 PHVSIHSLSQKYGPLM--HLK-FGLSPVVVGSSAEVAELLLKTHDISFASRPALL 105 (107)
Q Consensus 54 ~~~~~~~~~~~~g~~~--~~~-~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~~ 105 (107)
++..+.++ +++|+++ +.+ .|+.+.++++++++++++|+++ ..|++|+...
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~ 99 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKST 99 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCS
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccc
Confidence 77778888 5689999 888 6788999999999999999666 6898887643
No 59
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=97.65 E-value=7e-05 Score=49.16 Aligned_cols=51 Identities=10% Similarity=-0.030 Sum_probs=43.3
Q ss_pred cCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 50 IGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 50 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+..+++..+.+++++ |+++++..++ +.++++||+.++++++++ ..|++|+.
T Consensus 22 ~~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~ 72 (396)
T 3oft_A 22 VEQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCL 72 (396)
T ss_dssp TTTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTC
T ss_pred hhcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcc
Confidence 357899999999998 9999999874 588899999999999654 58888873
No 60
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=97.55 E-value=0.00017 Score=47.81 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHHHcC-CeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 51 GPLPHVSIHSLSQKYG-PLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
..+++..+.++++++| ++++...++ +.++++||+.++++|+ +...|++++.
T Consensus 37 ~~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~ 88 (421)
T 3lxh_A 37 EQGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVI 88 (421)
T ss_dssp GGCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCC
T ss_pred hcChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcc
Confidence 4688999999987755 899998876 5899999999999994 4468888774
No 61
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=97.54 E-value=0.00021 Score=47.50 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHcCCeeEEE-cCC-cCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 52 PLPHVSIHSLSQKYGPLMHLK-FGL-SPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 52 ~~~~~~~~~~~~~~g~~~~~~-~~~-~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
.+++..++++.+ ||++++.. .|. .+.+++++++.++++|++. ..|++++..
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~ 89 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAPS-APLTSEYGM 89 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCTT-SSEECTTCS
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhCh-hhhcCCccc
Confidence 578999999987 89999986 443 7899999999999999554 478887653
No 62
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=97.50 E-value=0.00013 Score=48.40 Aligned_cols=50 Identities=20% Similarity=0.109 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHcCCee-----EEEcCCcCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 51 GPLPHVSIHSLSQKYGPLM-----HLKFGLSPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
..+++..++++. +||+++ +++. .+.++++||+.++++|.++ ..|++|+..
T Consensus 24 ~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~ 78 (414)
T 2uuq_A 24 WPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGL 78 (414)
T ss_dssp TTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCS
T ss_pred ccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCc
Confidence 367888898885 689999 7776 6799999999999999876 678888654
No 63
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=97.35 E-value=0.00042 Score=45.57 Aligned_cols=48 Identities=6% Similarity=0.017 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
..+++..+.++++ ||+++++ +. +.++++||+.+++++.++. .|++++.
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~--~~-~~vvv~~~~~v~~vl~~~~-~f~~~~~ 64 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRD--RN-GLAAASTYQAVIDAERQPE-LFSNAGG 64 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEEC--TT-CCEEECSHHHHHHHHTCTT-TEESTTC
T ss_pred ccChhHHHHHHHh-cCCeeec--CC-CeEEEecHHHHHHHHhCcc-cccCccc
Confidence 4678889999987 8999854 33 7899999999999997654 7888764
No 64
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=97.32 E-value=0.00026 Score=46.90 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHHcCCeeEEEcCC--cCEEEecCHHHHHHHHhhccccccCCC
Q 043968 52 PLPHVSIHSLSQKYGPLMHLKFGL--SPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 52 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
.+++..+++++ +||+++++++++ .+.+++++|+.+++||.++ .|+.++
T Consensus 27 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~~--~f~~~~ 76 (411)
T 2dkk_A 27 PEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITNDP--RFGRAE 76 (411)
T ss_dssp SCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTCT--TEESGG
T ss_pred ccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcCC--CcccCC
Confidence 45558888887 799999999865 7899999999999999763 566554
No 65
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=97.24 E-value=0.0004 Score=46.42 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCCc
Q 043968 52 PLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPAL 104 (107)
Q Consensus 52 ~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~~ 104 (107)
.++..+++++ ++||++++...++ .+++++|+.+++||.++. .|++++..
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~ 101 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLV 101 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTT
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-cccccccc
Confidence 5667777776 5799999987665 899999999999997765 48877654
No 66
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=97.13 E-value=0.00065 Score=44.85 Aligned_cols=48 Identities=21% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
..+++..++++ ++||++++.+.| .+++++|+.++++|+++ ..+++|+.
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~ 75 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTK 75 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGG
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCccc
Confidence 67899999988 567999988776 89999999999999664 35566653
No 67
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=97.01 E-value=0.00091 Score=43.54 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 55 HVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 55 ~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+..++++ ++||++++. | +.+++++++.++++|.++ ..|++|+.
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~ 44 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLT 44 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCS
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-cccccccc
Confidence 4556677 578999976 4 588999999999999864 47888874
No 68
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=96.95 E-value=0.00056 Score=44.94 Aligned_cols=45 Identities=22% Similarity=0.098 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 52 PLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 52 ~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
.+++..+.++ ++||++++ + +.+.++++||+.++++|.+ ..|++++
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~ 57 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTG 57 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHH
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCc
Confidence 4677788776 58999998 6 5789999999999999976 3566553
No 69
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=96.90 E-value=0.0026 Score=42.34 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=40.7
Q ss_pred CCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
..++...+.+++++ |++++... ++.+.+++++++.+++++++. ..|++++
T Consensus 37 ~~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~ 87 (426)
T 3rwl_A 37 NDSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDA 87 (426)
T ss_dssp TTCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCG
T ss_pred cCCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-ccccccc
Confidence 35688899999886 99999987 456799999999999999765 4566654
No 70
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=96.80 E-value=0.0013 Score=42.84 Aligned_cols=42 Identities=19% Similarity=0.088 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 55 HVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 55 ~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
+..+.++. +||++++.+ | .+++++|+.++++|.++ ..|++++
T Consensus 2 ~~~~~~lr-~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~ 43 (367)
T 3b4x_A 2 YDWFKQMR-KESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNL 43 (367)
T ss_dssp HHHHHHHH-HHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCC
T ss_pred CHHHHHHH-HcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCc
Confidence 45566774 699999887 3 78999999999999865 4787774
No 71
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=96.80 E-value=0.00034 Score=46.02 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHHcCCeeEEEcC-Cc---CEEEecCHHHHHHHHhhccccccCCCC
Q 043968 58 IHSLSQKYGPLMHLKFG-LS---PVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 58 ~~~~~~~~g~~~~~~~~-~~---~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
+.+++++ |++++++++ +. +.++++||+.++++|.++ ..|++|+.
T Consensus 19 ~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~ 66 (398)
T 1lfk_A 19 ADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRR 66 (398)
T ss_dssp CHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTT
T ss_pred hHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccc
Confidence 3456666 999999875 45 899999999999999333 25777764
No 72
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=96.16 E-value=0.0034 Score=40.44 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=28.0
Q ss_pred HHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 63 QKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 63 ~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++||++++. + .++++||+.++++|.++ ..|++|+
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~ 35 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNP 35 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSC
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCC
Confidence 578999875 3 89999999999999876 4788886
No 73
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=94.94 E-value=0.056 Score=35.75 Aligned_cols=57 Identities=18% Similarity=0.072 Sum_probs=40.5
Q ss_pred CCceeee---ccccCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccC
Q 043968 40 PWPFIGN---LNLIGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFAS 100 (107)
Q Consensus 40 ~~p~~g~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~ 100 (107)
+.|.+|- ...+..|+...++++++ +|+++ |.++...+++++.+++++||++.. .|++
T Consensus 19 ~~P~~~~dp~~~~~~~dP~~~~~~lR~-~gPV~--~~~~~~~~~vt~~~~v~~vl~d~~-~fs~ 78 (412)
T 4dnj_A 19 GVPHLGIDPFALDYFADPYPEQETLRE-AGPVV--YLDKWNVYGVARYAEVYAVLNDPL-TFCS 78 (412)
T ss_dssp TSCEECCCTTSHHHHHSCHHHHHHHHH-HCSSE--EETTTTEEEECSHHHHHHHHTCTT-TEES
T ss_pred CCCccCCCCCCHHHHhCcHHHHHHHHh-cCCEE--EECCCCEEEECCHHHHHHHHcCCc-cccC
Confidence 4566652 12235678888888866 59996 456677899999999999996543 5544
No 74
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=94.74 E-value=0.0058 Score=40.43 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=42.5
Q ss_pred CCceeeeccc-----cCCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 40 PWPFIGNLNL-----IGPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 40 ~~p~~g~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|.+|+..+ +..++...+.+++++ ++++.. .+.+++++++.++++|.++ .|+.++
T Consensus 42 ~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d~--~f~~~~ 102 (381)
T 2yjn_B 42 GYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDDP--AFTRAT 102 (381)
T ss_dssp HHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHCS--SEESSC
T ss_pred cccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcCC--CcCCCc
Confidence 4678887644 356889999998876 888654 4579999999999999763 576654
No 75
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=93.44 E-value=0.015 Score=38.53 Aligned_cols=42 Identities=7% Similarity=-0.114 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhcc
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHD 95 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~ 95 (107)
..++... +..+++|+++++.+++.. +++++++.++++|+++.
T Consensus 32 ~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~ 73 (416)
T 3p3o_A 32 PNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR 73 (416)
T ss_dssp TTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT
T ss_pred ccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc
Confidence 4566666 444568999998887766 89999999999997764
No 76
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=90.64 E-value=0.19 Score=32.95 Aligned_cols=43 Identities=19% Similarity=0.097 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHcCCeeEEEcCCcCEEEecCHHHHHHHHhhccccccC
Q 043968 52 PLPHVSIHSLSQKYGPLMHLKFGLSPVVVGSSAEVAELLLKTHDISFAS 100 (107)
Q Consensus 52 ~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~ 100 (107)
.++...+.+++++ |++++...| .+++++++.+++++++. .|+.
T Consensus 20 ~dp~~~~~~lr~~-~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~ 62 (394)
T 2wiy_A 20 NNPYPWYRRLQQD-HPVHKLEDG---TYLVSRYADVSHFAKLP--IMSV 62 (394)
T ss_dssp HCCHHHHHHHHHH-CSEEECTTS---CEEECCHHHHHHHTTST--TEEC
T ss_pred cCccHHHHHHHhc-CCeEEecCC---eEEEcCHHHHHHHHcCC--Cccc
Confidence 4678888888765 899876543 68899999999999654 3543
No 77
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=89.37 E-value=1.2 Score=22.14 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=42.1
Q ss_pred eeeeccccCCC----hHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPL----PHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
++|+++.-..+ ..+.+++.+.+||++..+.+. +.-.+...+++.++..+.. +...+.+|
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 46666543333 457788899999999888764 2345667899999999975 56667777
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.45 E-value=1.7 Score=22.93 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=42.6
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
++|++..- -..+.+.+++.+||++..+.+. +.-.|...+++.++..+..+...+.+|+-
T Consensus 15 fV~~Lp~~--~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l 81 (103)
T 1s79_A 15 YIKGFPTD--ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 81 (103)
T ss_dssp EEECCCTT--CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTC
T ss_pred EEECCCCC--CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEE
Confidence 46666532 3455678888999998777652 33566778999999999877777887764
No 79
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=88.21 E-value=1.8 Score=22.76 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=43.5
Q ss_pred ceeeeccccCCC----hHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPL----PHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++||+..-..+ ..+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|
T Consensus 18 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 18 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp EEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred EEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 467887754322 567788999999999888874 3355667899988888875 66666666
No 80
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=87.50 E-value=1.5 Score=21.24 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 54 PHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 54 ~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
..+.+.+++.+||++..+.+. +.-.+...+++.++..+..+...+.+|.-
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 70 (75)
T 1iqt_A 12 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKC 70 (75)
T ss_dssp CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCC
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 345578888899998777763 23456678999999999887777777653
No 81
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.32 E-value=2.5 Score=22.41 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=42.3
Q ss_pred eeeeccccCC--ChHHHHHHHHHHcC-CeeEEEcCCcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGP--LPHVSIHSLSQKYG-PLMHLKFGLSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~--~~~~~~~~~~~~~g-~~~~~~~~~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.++|+..-.+ ..-..+.+++.+|| ++..+ .+++-.|.-.+.|.++..+.+ +...+-+|+
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 3777765522 22345788999995 88888 568889999999999888854 444555665
No 82
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=80.26 E-value=3.6 Score=19.79 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCCCC
Q 043968 54 PHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASRPA 103 (107)
Q Consensus 54 ~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r~~ 103 (107)
..+.+.+++.+||++..+.+.. .-.+...+++.++..+..+...+.+|+-
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 70 (75)
T 2mss_A 12 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 70 (75)
T ss_dssp CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCC
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEE
Confidence 3455788889999987777632 2345567999999999877777777763
No 83
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=79.61 E-value=5.8 Score=21.81 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=40.5
Q ss_pred ceeeeccccCC--ChHHHHHHHHHHcCCeeEEEcC------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGP--LPHVSIHSLSQKYGPLMHLKFG------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++||+..-.. +.-..+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 32 LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 45777764321 2223466889999999877762 3456777899999888854 555666665
No 84
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=77.54 E-value=6.1 Score=20.86 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCeeEEEcC-----------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 55 HVSIHSLSQKYGPLMHLKFG-----------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 55 ~~~~~~~~~~~g~~~~~~~~-----------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.+-+++.+.+||++..+.+. +.-.|.-.+++.++..+.. |...|.+|+
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 34567778889999988873 2235667799888887743 666777765
No 85
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=77.36 E-value=6 Score=20.90 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=40.5
Q ss_pred CCceeeecccc---CCChHHHHHHHHHHcCCeeEEEcC----------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 40 PWPFIGNLNLI---GPLPHVSIHSLSQKYGPLMHLKFG----------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 40 ~~p~~g~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
..-.+.|+..- ..+..+.+++.+.+||.+..+.+. +.-.+...+++.++....+ +...|.+|+
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 34456666532 345567778888999998777652 1234556799888887754 666777765
No 86
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.46 E-value=5.3 Score=20.39 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=38.0
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++|++ .--.+.+++++.+||++..+.++ +.-.|...+++.++..+.. +...+.+|
T Consensus 18 l~V~n~----~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 18 LYVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp EEEECS----SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred EEEcCC----CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 356763 33456678899999999888764 3345667799999998854 44444443
No 87
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=74.76 E-value=7.4 Score=20.47 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=43.4
Q ss_pred CCCCCCceeeeccccCCChHHHHHHHHHHcCCeeEEEc---C---CcCEEEecCHHHHHHHHh-hccccccCCC
Q 043968 36 PGPTPWPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKF---G---LSPVVVGSSAEVAELLLK-THDISFASRP 102 (107)
Q Consensus 36 p~~~~~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~---~~~~v~~~~p~~~~~vl~-~~~~~~~~r~ 102 (107)
|.+...-++||+..- -..+.+.+++.+||++..+.+ + +.-.+...+++.++..+. -+...+.+|+
T Consensus 5 ~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 5 PEVNRILYIRNLPYK--ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp TTCCSEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 333344467776532 334557888899999887776 2 245677889999998886 3555666664
No 88
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.71 E-value=6.7 Score=19.99 Aligned_cols=59 Identities=8% Similarity=0.132 Sum_probs=40.6
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
-++|++..- --.+.+++++.+||++..+.+.. .-.+...+++.++..+.-+...+.+|+
T Consensus 13 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 13 IFVGGIPHN--CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp EEEESCCSS--CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 356666532 33455788889999988777632 245667899999999976666666664
No 89
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=74.54 E-value=3.2 Score=20.66 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=39.9
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC-----C----cCEEEecCHHHHHHHHhhccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-----L----SPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~----~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
-++|++..- -..+.+++++.+||++..+.+. + .-.+...+++.++..+..+...+.+|+
T Consensus 14 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 81 (87)
T 3s7r_A 14 MFVGGLSWD--TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV 81 (87)
T ss_dssp EEEECCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence 356776532 2455678888999998776652 1 245567799999999977666666654
No 90
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.99 E-value=7 Score=19.97 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=39.4
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-+++++..- -..+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 20 l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 20 LFISGLPFS--CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 356666532 2345578888999998777653 2346667899999999854 555555553
No 91
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=73.94 E-value=8.6 Score=20.85 Aligned_cols=62 Identities=15% Similarity=0.031 Sum_probs=42.3
Q ss_pred Cceeeecccc---CCChHHHHHHHHHHcCCeeEEEcC-------------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 41 WPFIGNLNLI---GPLPHVSIHSLSQKYGPLMHLKFG-------------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.-.+.|+..- ..+..+-+++.+.+||.+..+.+. +.-.|.-.+++.++..... +...|.+|+
T Consensus 22 vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 22 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp EEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3456666543 356777888899999998877652 1234556799888877754 666777775
No 92
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=73.11 E-value=3 Score=22.31 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHcCCeeEEEcCCc-CEEEecCHHHHHHHHh
Q 043968 54 PHVSIHSLSQKYGPLMHLKFGLS-PVVVGSSAEVAELLLK 92 (107)
Q Consensus 54 ~~~~~~~~~~~~g~~~~~~~~~~-~~v~~~~p~~~~~vl~ 92 (107)
-...+.+++..||.+.--|+... ..+++.+|+.++++++
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 45567788889999999999665 6677889999999997
No 93
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=73.02 E-value=7.8 Score=19.96 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=39.5
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC-CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-+++++..- --.+.+++++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|
T Consensus 14 l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 14 LFVRNLANT--VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp EEEECCCTT--CCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 356776532 3345678888999998888763 3456667899999998864 44444443
No 94
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=72.75 E-value=16 Score=24.14 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHcC-CeeEEEcCCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 51 GPLPHVSIHSLSQKYG-PLMHLKFGLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
..+++..+++++++.+ +++....++ ..+++++.+++++||++. ..|+++.
T Consensus 36 ~~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d~-~~fs~~~ 86 (417)
T 4dxy_A 36 EDGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSDP-TRFSSEV 86 (417)
T ss_dssp GGCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTCT-TTEESSC
T ss_pred hcChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcCc-hhccCCC
Confidence 3567777777766432 343333333 578899999999999654 3676543
No 95
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.61 E-value=8 Score=19.87 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=38.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-+++++..- --.+.+++++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|
T Consensus 18 l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 18 LHVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp EEEESCCTT--CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 356776532 2345578888999998777752 2346667899999999864 44445554
No 96
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=71.95 E-value=8.1 Score=19.65 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=40.8
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++..- .-..+.+.+++.+||++..+.+ -+.-.+...+++.++..+.. +...+.+|+
T Consensus 14 ~V~nlp~~-~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 14 FIGNLPLK-NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEESSTTS-CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred EEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 56776531 2234567888899999877776 44566778899999999974 555555654
No 97
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=71.39 E-value=8.5 Score=19.67 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=37.1
Q ss_pred eeeccccCCChHHHHHHHHHHcCCeeEEEcC----CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 44 IGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG----LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 44 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
+|++.. .-..+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 5 V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 5 VGNLGT--GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp EECCCS--SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred EeCCCC--CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 455432 22345678888999988776652 3456667899999998864 444455544
No 98
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=71.13 E-value=8.9 Score=19.81 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=39.3
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++||++.- --.+.+++++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|+
T Consensus 22 lfV~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 22 LIVNYLPQN--MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 357777533 23456788889999987776521 134667899999988854 555666654
No 99
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=70.64 E-value=8.6 Score=19.42 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=40.0
Q ss_pred ceeeeccccC--CChHHHHHHHHHHcCCeeEEEcC------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIG--PLPHVSIHSLSQKYGPLMHLKFG------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..-. .+....+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 11 l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 3577765431 12223445899999999888764 4567778899999998864 444555543
No 100
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=70.28 E-value=7.6 Score=20.75 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=37.6
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhhccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
++|++..- --.+.+.+++.+||++..+.+. +.-.|...+++.++..+.-+...+.+|
T Consensus 40 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 105 (124)
T 2jwn_A 40 YVGNVDYG--STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGR 105 (124)
T ss_dssp EEEEECTT--CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 45665422 2355678888999998766652 124566789999999995455555554
No 101
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=69.68 E-value=9.6 Score=22.45 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=40.7
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|++.. .-..+.+++++.+||++..+.+. +.-.|...+++.++..+......+.+|+
T Consensus 113 ~V~nLp~--~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 113 YIKGFPT--DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp EEECCCT--TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred EecCCCC--cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 4566542 34457788999999998766542 2355667899999999976655777765
No 102
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.65 E-value=8.5 Score=19.50 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=37.7
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC------------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG------------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
++|++..- -..+.+++++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|
T Consensus 9 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 9 FIKNLNFS--TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 46666532 3345678888999988766653 2345667899999999975 44445444
No 103
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=69.54 E-value=7 Score=21.10 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCeeEEEcC-----CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 56 VSIHSLSQKYGPLMHLKFG-----LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 56 ~~~~~~~~~~g~~~~~~~~-----~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
+.+++.+.+||.+..+.+. |.-.+.-.+++.++..+.. +...|.+|+
T Consensus 32 edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3446677789998887762 3456667799888887754 666777775
No 104
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=69.46 E-value=13 Score=21.07 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=39.5
Q ss_pred eeeeccccCCChHHHHHHHHHHcC--CeeEEEcC-----C----cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYG--PLMHLKFG-----L----SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~-----~----~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++.. .--.+.+++++.+|| .+..+.+. + .-.|...+++.++..+.. +...+.+|+
T Consensus 59 fVgnLp~--~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 59 YVGSFSW--WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp EEECCCT--TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred EEeCCCC--CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4555542 233556788899999 88777652 1 246667899999999977 666666664
No 105
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=69.07 E-value=8.6 Score=18.81 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=39.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- -..+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 10 l~V~nl~~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 10 LYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCCC--CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 356666532 2346678888999998887762 2245667899999998843 555565554
No 106
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=68.60 E-value=8.3 Score=18.77 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 55 HVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 55 ~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.+.+.+.+.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 15 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 15 DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45677888899998776642 1245667899999999864 555555554
No 107
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=67.65 E-value=9.6 Score=18.82 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=37.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|++..- -..+.+.+++.+||++..+.+.. .-.+...+++.++..+.-+...+.+|+
T Consensus 10 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~ 76 (89)
T 3ucg_A 10 YVGNVDYG--ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 76 (89)
T ss_dssp EEESCCTT--CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE
Confidence 34555422 23455788889999987766521 245667799999988855655565543
No 108
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=67.26 E-value=2.4 Score=22.74 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHcCCeeEEEcCCc-CEEEecCHHHHHHHHhh--ccccccCC
Q 043968 54 PHVSIHSLSQKYGPLMHLKFGLS-PVVVGSSAEVAELLLKT--HDISFASR 101 (107)
Q Consensus 54 ~~~~~~~~~~~~g~~~~~~~~~~-~~v~~~~p~~~~~vl~~--~~~~~~~r 101 (107)
-..-+.+++..||.+.--|+... ..+++.+|+.+++++.. ....|.-|
T Consensus 18 Kt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ 68 (101)
T 3ctr_A 18 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQ 68 (101)
T ss_dssp CHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCC
T ss_pred hhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 34556788888999999999654 66778899999999973 34445444
No 109
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=67.16 E-value=14 Score=20.54 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=40.1
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|++.. .-..+.+.+.+.+||++..+.+.. .-.+...+++.++..+..+...+.+|+
T Consensus 91 ~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 91 FVGGIGP--DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp EEEEECT--TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred EECCCCC--CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 4555542 223455778888999987777532 235667799999999986666777765
No 110
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=66.96 E-value=11 Score=19.35 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=39.9
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- -..+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 26 l~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 26 LFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCC--CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 356666532 3345578889999998777752 2245667899999999864 555666664
No 111
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.94 E-value=11 Score=19.32 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=41.1
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- -..+.+.+++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|+
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 18 VYVGGLDEK--VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp EEEECCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 357776533 33555788899999998887633 345667899999999975 555566654
No 112
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.92 E-value=10 Score=18.96 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=38.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC-cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL-SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++|++..- --.+.+++++.+||++..+.+.. .-.+...+++.++..+.. +...+.+|
T Consensus 13 l~V~nLp~~--~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 13 LHVGNISPT--CTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp EEEESCCSS--CCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 356776532 34556788899999988777643 455667799999988854 44444443
No 113
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.91 E-value=12 Score=19.63 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHcCCeeEEEcC----CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 54 PHVSIHSLSQKYGPLMHLKFG----LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 54 ~~~~~~~~~~~~g~~~~~~~~----~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
-.+.+++++.+||++..+.+. +.-.|...+++.++..+... ..+.+|+
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~ 81 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNE-VGLVDNP 81 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTC-CBCSSSB
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhc-CCCCCCe
Confidence 366788999999998887763 23466678999999998763 3344444
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=66.40 E-value=10 Score=19.90 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=39.4
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++..- --.+.+.+++.+||++..+.+ .+.-.|...+++.++..+.. +...+.+|+
T Consensus 35 ~V~nLp~~--~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 35 FVRPFPLD--VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp EECSSCTT--CCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 46666432 235567888899998876665 45566777899999998864 555555553
No 115
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=66.28 E-value=11 Score=18.82 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=38.5
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
+++++.. .-..+.+++++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 12 ~V~nlp~--~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 12 FVRNLPF--DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp EECSCCT--TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4666652 23456678888999988766652 2245667799999998864 555566654
No 116
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.19 E-value=8 Score=20.40 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=38.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
++|++..- --.+.+++++.+||.+..+.+.. .-.|...+++.++..+..+...+.+|
T Consensus 31 ~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~ 96 (116)
T 1x4b_A 31 FIGGLSFE--TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGR 96 (116)
T ss_dssp EEECCTTC--CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCE
Confidence 46666432 33455788889999887666522 34566779999999997765555554
No 117
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=66.18 E-value=11 Score=19.89 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=38.4
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
++||+..- --.+.+++++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|
T Consensus 9 fV~nLp~~--~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 9 FIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp EEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred EECCCCCC--CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 56776533 2346678889999998766652 1246678899999998864 44455554
No 118
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=66.03 E-value=9.7 Score=20.55 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=38.5
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++ .--.+.+++++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 42 lfVgnl----~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 42 LYVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp EEEECS----SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEcCC----CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 356763 23456678889999988766653 3355667799999888854 555566654
No 119
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.87 E-value=12 Score=19.25 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=40.9
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCc----------CEEEecCHHHHHHHHhh--ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLS----------PVVVGSSAEVAELLLKT--HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~v~~~~p~~~~~vl~~--~~~~~~~r~ 102 (107)
-++|++..- --.+.+++++.+||++..+.+... -.|...+++.++..+.. +...+.+|+
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 18 ILVRNIPFQ--ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred EEEeCCCCc--CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 357776532 334557888999999988887332 35667899999999865 555666654
No 120
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=65.64 E-value=13 Score=19.50 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=39.8
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
-++|++.. .--.+.+++++.+||++..+.+.. .-.+...+++.++..+......+.+|
T Consensus 28 lfV~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~ 94 (109)
T 2rs2_A 28 MFIGGLSW--QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK 94 (109)
T ss_dssp EEEESCCT--TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTE
T ss_pred EEEeCCCC--CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCE
Confidence 35676652 233455788889999988777632 34667789999999997665555554
No 121
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=65.22 E-value=14 Score=19.74 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=40.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-+++++..- --.+.+.+++.+||.+..+.+. +.-.|...+++.++..+.. +...+.+++
T Consensus 25 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 25 LFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 356666532 3455678888999999888762 2356778899999999854 555566554
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=65.19 E-value=14 Score=19.75 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=40.2
Q ss_pred ceeeeccccCCChHHHHHHHHHHcC-CeeEEEcC-----CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYG-PLMHLKFG-----LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++||+.. .--.+.+++++.+|| .+....+. +.-.|...+++.++..+.. +...+.+|
T Consensus 31 l~VgnLp~--~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 31 ITMKNLPE--GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp EEEECSSC--CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred EEEECCCC--CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45777753 334566788899999 77777663 4466778899999988854 55555554
No 123
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.67 E-value=14 Score=19.46 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=39.3
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
-+++++..- --.+.+++++.+||++..+.+.. .-.|...+++.++..+......+.+|
T Consensus 20 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~ 86 (116)
T 2cqd_A 20 IFVGGLPYH--TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGR 86 (116)
T ss_dssp EEEECCCSS--CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCE
Confidence 356776532 33456788889999988877633 24566789999999997654445444
No 124
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.14 E-value=6.5 Score=20.30 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=38.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
+++++..- --.+.+++++.+||++..+.+.. .-.|...+++.++..+..+...+.+|
T Consensus 20 ~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 85 (105)
T 2dh8_A 20 FVGGLDWS--TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 85 (105)
T ss_dssp CCBSCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 46666432 34556788889999987766522 24566789999999997765555554
No 125
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.91 E-value=13 Score=19.01 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=40.2
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- --.+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 16 l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 16 LKVDNLTYR--TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 357776533 3345578888999999888763 2346667899999988863 555565554
No 126
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=63.91 E-value=14 Score=19.35 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=31.6
Q ss_pred HHHHH-HHcCCeeEEEcCC--------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 58 IHSLS-QKYGPLMHLKFGL--------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 58 ~~~~~-~~~g~~~~~~~~~--------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
+.+.+ .+||++..+.+.. .-.|.-.+++.++..+.+ +...|.+|+
T Consensus 43 l~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 34556 8999998888742 234556799988888754 666777775
No 127
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.74 E-value=9.7 Score=19.98 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=38.6
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|++..- --.+.+.+++.+||.+..+.+. +.-.|...+++.++..+.-+...+.+|+
T Consensus 29 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 95 (114)
T 2cq4_A 29 FCMQLAAR--IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP 95 (114)
T ss_dssp EEESCCTT--CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE
Confidence 46665422 2345678888999998887763 2345667789888888854555565553
No 128
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=63.59 E-value=10 Score=18.98 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=39.2
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC--------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL--------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-+++++..- -..+.+++++.+||++..+.+.. .-.+...+++.++..+.. +...+.+|+
T Consensus 19 l~v~nlp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 19 VFVGNLEAR--VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 356666532 23456788899999987777532 245667799999998863 555555554
No 129
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=63.24 E-value=24 Score=23.73 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=38.5
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++||+..- --...+.+++.+||.|..+.+. +.-+|...+++.++..+.. +...+.++
T Consensus 105 lfV~nL~~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 105 LFVARVNYD--TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred EEEeCCCCC--CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 467776533 2345678888899998777652 2356667799999988855 44455444
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=63.21 E-value=13 Score=18.93 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=39.5
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++|++..- .--.+.+++++.+||.+..+.+ .+.-.+...+++.++..+.. +...+.+|
T Consensus 25 l~V~nLp~~-~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 25 LFIGNLPLK-NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp EEEESCCSS-CCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred EEEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 357777530 2234567888999999888776 34456667899999998863 44444444
No 131
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=63.11 E-value=13 Score=19.09 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=38.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-+++++..- -..+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 32 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 32 LLVSNLDFG--VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 356666432 2345578888999998766642 1245667799999999874 555565554
No 132
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=62.87 E-value=24 Score=21.76 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=41.2
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
-++|++..- --.+.+.+++.+||++..+.+. +.-.+...+++.++..+..+...+.+|+
T Consensus 44 l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 109 (292)
T 2ghp_A 44 VLVKNLPKS--YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE 109 (292)
T ss_dssp EEEEEECTT--CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE
Confidence 357777533 3355678889999998776652 2356668899999999976666666654
No 133
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.85 E-value=6 Score=20.81 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=38.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++..- --.+.+++++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 33 ~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 33 HVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp EEESCCTT--CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCc--CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 46666432 3455678888999988766653 3345667799999888864 555555554
No 134
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.77 E-value=13 Score=18.79 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=37.9
Q ss_pred ceeeeccccC--CChHHHHHHHHHHcCCeeEEEcC------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIG--PLPHVSIHSLSQKYGPLMHLKFG------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++|++..-. .+....+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|
T Consensus 12 l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 12 VQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3577765331 12222344889999999888764 3345667899999988863 44445444
No 135
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=62.26 E-value=13 Score=18.27 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=38.2
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC----------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG----------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++..- --.+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 8 ~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 8 HIGRLTRN--VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp EEECCCTT--CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 45565422 2345677888999998777752 2345667899999999874 555555543
No 136
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.40 E-value=9.2 Score=18.26 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCCC
Q 043968 56 VSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 56 ~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
+.+.+.+.+||++..+.+.. .-.+...+++.++..+......+.+|+
T Consensus 15 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 70 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 70 (77)
T ss_dssp HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE
Confidence 34677888899876555421 234445689999999876556677765
No 137
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.15 E-value=15 Score=18.92 Aligned_cols=58 Identities=19% Similarity=0.120 Sum_probs=40.1
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeE-EEcC--------CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMH-LKFG--------LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~--------~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|++.. .--.+.+++++.+||.+.. +.+. +.-.|...+++.++..+..+...+.+|.
T Consensus 19 ~V~nLp~--~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 19 RLRGLPF--GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp EEESCCT--TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 5666653 2345567888888997654 4431 2356777899999999988776777764
No 138
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=60.92 E-value=17 Score=19.24 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=40.5
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC--CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++||+..-. -.+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|.
T Consensus 19 l~V~nLp~~~--t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 19 VVVSGLPPSG--SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEEECCSSC--CTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3577776432 233457788899998887764 4456777899999998863 555666654
No 139
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.77 E-value=16 Score=19.15 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=40.5
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++||+.. .-..+.+++++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 14 ~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 14 LAKNLPA--GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 4566542 23456678899999999888863 3456667899999988854 555666665
No 140
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.53 E-value=15 Score=18.72 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=38.2
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHh-hccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLK-THDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~-~~~~~~~~r 101 (107)
-++|++..- --.+.+++++.+||++..+.+. +.-.|...+++.++..+. -+...+.+|
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 18 LYVGNLSRD--VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEeCCCcc--CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 356776532 3455678888999998777652 234566789999998886 344444444
No 141
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=60.01 E-value=19 Score=19.56 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=37.5
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
++|++..- --.+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|
T Consensus 46 ~V~nLp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 46 MVNYIPTT--VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp EEESCSTT--CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46666432 2345678888999998776652 1245667899999999874 44445554
No 142
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.61 E-value=17 Score=18.86 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=38.5
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
++|++.. .--.+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|
T Consensus 29 ~V~nl~~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 89 (109)
T 1x4g_A 29 YCGGIAS--GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGH 89 (109)
T ss_dssp EEECCSS--CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4666653 23455678888999998877763 4456667899999988854 44444444
No 143
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.36 E-value=16 Score=18.57 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=38.2
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
.-++|++..- --.+.+++++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|
T Consensus 14 ~l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 14 VLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CEEEESCCSS--CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3457776533 33566788889999987777622 234556799999998854 44444443
No 144
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=59.07 E-value=15 Score=19.28 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=37.4
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-+++++..- --.+.+++++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|
T Consensus 28 l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 28 LFIYHLPQE--FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp EEEESCCSS--CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 356776533 23466788899999887666421 245567799999998854 44444443
No 145
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=58.28 E-value=17 Score=18.47 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=38.4
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++.. .--.+.+++++.+||.+..+.+. +.-.+...+.+.++..+.. +...+.+|.
T Consensus 31 ~V~nlp~--~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 31 YIGNIPH--FATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEcCCCc--ccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4666653 23456678888999988777653 3345666799988888854 555555553
No 146
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=58.26 E-value=15 Score=17.94 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=38.1
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++..- -..+.+++++.+||++..+.+.. .-.+...+++.++..+.. +...+.+|+
T Consensus 10 ~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 10 FVGDLSPE--ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp EEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 46665432 34556788889999987766521 235667899999999874 545555543
No 147
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.97 E-value=16 Score=18.19 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=39.3
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcC------C---cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG------L---SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~---~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.-+++++..- --.+.+.+++.+||++..+.+. . .-.+...+++.++..+.. +...+.+|+
T Consensus 17 ~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 17 CLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CEEEESCCSS--CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3457776533 2345678888999998777652 1 245567899999999864 555555543
No 148
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.70 E-value=17 Score=18.43 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=39.1
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-+++++..- -..+.+.+++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|+
T Consensus 15 l~v~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 15 LFVGGLSFD--TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred EEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 356776532 34455788889999987777633 235557799999998844 555566654
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=56.98 E-value=15 Score=19.09 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=37.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
++|++..- .--.+.+++++.+||++..+.+ .+.-.|...+++.++..+.. +...+.+|
T Consensus 31 ~V~nl~~~-~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 31 FIGNLNTA-LVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp EECSCCCS-SCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred EEeCCCcc-cCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 56666422 0345667889999999877665 33355667789988888844 44444443
No 150
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.46 E-value=6.5 Score=20.72 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=37.5
Q ss_pred ceeeeccccCCChHHHHH---HHHHHcCCeeEEEcCC------------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIH---SLSQKYGPLMHLKFGL------------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~------------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++|++..-..+ +.+. +++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|
T Consensus 18 l~V~nLp~~~~~--~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 18 VFVVGLSQRLAD--PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp EEEEEECTTTCC--HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEECCCCCCCH--HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 357777644222 2234 7788899987776531 345567799999999876 55555554
No 151
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.02 E-value=18 Score=18.21 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=38.2
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
+++++..- -..+.+++++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|
T Consensus 12 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 12 FVRNLSYT--SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp EEECCCTT--CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46666532 23456788889999998888732 245667899999998843 44445554
No 152
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=55.86 E-value=18 Score=18.15 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=37.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
++|++..- -..+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|
T Consensus 6 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 6 YLGSIPYD--QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEECCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 45555422 2345578888999998888763 2245667899999988853 44445544
No 153
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=55.77 E-value=24 Score=19.47 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=41.2
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC----CcCEEEecCHHHHHHHHhh-ccccccCCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG----LSPVVVGSSAEVAELLLKT-HDISFASRPA 103 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~~~~p~~~~~vl~~-~~~~~~~r~~ 103 (107)
-++|++..-. -.+.+++++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+-
T Consensus 76 l~V~nl~~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 76 VYVGNLGNNG--NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp EEEESCCSCC--SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred EEEeCCCCCC--CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3577775432 234467888899999887763 3456667899999999864 5556666653
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=55.57 E-value=16 Score=20.86 Aligned_cols=58 Identities=9% Similarity=0.166 Sum_probs=39.2
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
+++++.. .--.+.+.+++.+||.+..+.+.. .-.|...+++.++..+..+...+.+|+
T Consensus 108 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~ 174 (196)
T 1l3k_A 108 FVGGIKE--DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 174 (196)
T ss_dssp EEECCTT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE
T ss_pred EEeCCCC--CCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE
Confidence 4555542 233556788889999987666521 245667899999999977666666654
No 155
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.03 E-value=17 Score=18.44 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=38.6
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- --.+.+++++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 18 LFVGNLPPD--ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp EEEESCCTT--CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred EEEeCCCCC--CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 357776533 3345578888999988777763 3345666788888888844 444555554
No 156
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=54.73 E-value=21 Score=18.58 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=37.8
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++|++..- --.+.+++++.+||.+..+.+.. .-.|...+++.++..+.. +...+.+|
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 18 VFVGDLSPE--ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 356766532 33456788899999987766522 245667899999999864 44444443
No 157
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=54.62 E-value=27 Score=19.71 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=38.9
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++.. .--...+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+++
T Consensus 75 l~V~nLp~--~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 75 LFVTSIHE--EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp EEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC--CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 35666653 23456678889999998776652 2345667899999988864 444555543
No 158
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.46 E-value=19 Score=17.94 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=39.3
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-+++++..- -..+.+.+++.+||++..+.+.. .-.+...+++.++..+.. +...+.+|+
T Consensus 8 l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 8 LYVGSLHFN--ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 346666432 33455788889999987776522 345667899999999863 555566654
No 159
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.04 E-value=19 Score=17.82 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=39.3
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC-cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL-SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++|++..- --.+.+.+++.+||++..+.+.. .-.+...+++.++..+.. +...+.+|
T Consensus 12 l~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 12 IFVGNVSAA--CTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 357776532 34456788889999988887633 456667899999988864 44444444
No 160
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=53.79 E-value=22 Score=18.37 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=39.8
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- --.+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 29 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 29 LFVTSIHEE--AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 356766532 3345578889999999888763 2345667899999998863 544555543
No 161
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=52.68 E-value=13 Score=19.52 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=38.1
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++..- --.+.+++++.+||++..+.+.. .-.+...+++.++..+.. +...+.+|.
T Consensus 44 ~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 44 FIYHLPQE--FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp EEECSCTT--CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45665432 23466788889999988777632 245667899999998864 444555543
No 162
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=52.35 E-value=25 Score=18.60 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=38.5
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++..- -..+.+.+++.+||.+..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 11 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 11 FIGGLNRE--TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp EEECCTTT--CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 46666532 3455678888999988776653 2345667899999999864 444555553
No 163
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.18 E-value=22 Score=18.03 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=37.7
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHh-hccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLK-THDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~-~~~~~~~~r~ 102 (107)
++|++.. .-..+.+.+++.+||++..+.+. +.-.+...+++.++..+. -+...+.+|+
T Consensus 12 ~V~nlp~--~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 12 FVGNIPY--EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp EEESCCT--TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred EEeCCCC--cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4666542 22345578888999987666542 224556779999999985 3555666664
No 164
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=51.60 E-value=29 Score=19.21 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=40.5
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCCc---------CEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGLS---------PVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- -..+.+.+++.+||.+..+.+... -.+...+++.++..+.. +...+.+|+
T Consensus 73 l~v~nl~~~--~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 73 LKVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 356666432 345567888899999988886432 35667899999999965 555566654
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=51.28 E-value=34 Score=19.81 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=38.6
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHh-hccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLK-THDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~-~~~~~~~~r~ 102 (107)
++|++..- --.+.+.+++.+||++..+.+. +.-.|...+++.++..+. -+...+.+|+
T Consensus 32 ~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 32 YVGSIYYE--LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp EEECCCTT--CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred EEECCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 45665432 2355678889999998877762 234666789999999987 3454555554
No 166
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=51.24 E-value=30 Score=19.22 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=38.9
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC-----C----cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-----L----SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~----~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-+++++..- --.+.+.+++.+||++..+.+. + .-.|...+++.++..+.. +...+.++
T Consensus 42 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 42 LYVGNLSFY--TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 457776532 3355678889999998777762 1 235667899999999974 44444443
No 167
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=51.24 E-value=36 Score=20.22 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=41.2
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC----CcCEEEecCHHHHHHHHh-hccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG----LSPVVVGSSAEVAELLLK-THDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~~~~p~~~~~vl~-~~~~~~~~r~ 102 (107)
-++|++... .--.+.+.+++.+||++..+.+. +.-.|...+++.++..+. -+...+.+|+
T Consensus 37 l~V~nLp~~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 37 LLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp EEEESCCTT-TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCcc-cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 357777541 12346678888999999888764 445677889999999985 3455555554
No 168
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=50.64 E-value=27 Score=18.52 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=38.2
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHh-hccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLK-THDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~-~~~~~~~~r~ 102 (107)
++|++.. .-..+.+++++.+||++..+.+. +.-.|...+.+.++..+. -+...+.+|+
T Consensus 39 ~V~nlp~--~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 39 LVSNLDF--GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp EEESCCS--SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 4666542 23345578888999988776652 234566789999999886 3555565554
No 169
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.59 E-value=22 Score=17.56 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=39.5
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEc-CCcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKF-GLSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- --.+.+++++.+||++..+.+ -+.-.+...+++.++..+.. +...+.+|+
T Consensus 11 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 11 LFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp EEEESCCSS--CCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 356666532 234557888999999877775 44466677899999998853 444455554
No 170
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.27 E-value=27 Score=18.50 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=39.4
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh---ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT---HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~---~~~~~~~r~ 102 (107)
-++||+..- --.+.+++++.+||.+..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 19 LfV~nLp~~--vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 19 IHIRKLPID--VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp EEECSCCTT--SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 357776532 2345578899999998887763 3456777899998888863 223455554
No 171
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=48.85 E-value=30 Score=18.58 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=38.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++..- --.+.+++++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|+
T Consensus 67 ~v~nlp~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 67 YVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp EEECCCTT--CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred EEEeCCCC--CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 45555432 23466788899999998887632 245667899999999853 444455543
No 172
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=48.65 E-value=31 Score=18.68 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=40.2
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.-++|++..- --.+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 48 ~l~V~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 48 CLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CBCEETCTTS--CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3456766533 2345578888999998777762 1245667899999999874 555566654
No 173
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.63 E-value=26 Score=17.79 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=37.3
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhhccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
-+++++.. .--.+.+.+++.+||++..+.+.. .-.+...+++.++..+.+ ...+.+|
T Consensus 18 l~v~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~ 83 (103)
T 2cqg_A 18 LIVLGLPW--KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGR 83 (103)
T ss_dssp EEEESCCS--SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTE
T ss_pred EEEEcCCC--cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCe
Confidence 35677643 234556788889999987766521 245567899999999974 3344443
No 174
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.53 E-value=30 Score=18.52 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=39.7
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh---ccccccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT---HDISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~---~~~~~~~r~ 102 (107)
.-++||+..- .--.+.+++++.+||.+..+++. +.-.|...+++.++..+.. +...+.+|+
T Consensus 27 ~l~V~NLp~~-~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 27 VIHLSNLPHS-GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp EEEEESCCCS-SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred EEEEeCCCCc-cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3467777642 01234577888999998877763 3356667799988888763 333466665
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=48.47 E-value=23 Score=17.20 Aligned_cols=58 Identities=12% Similarity=0.258 Sum_probs=38.6
Q ss_pred eeeeccccCCChHHHHHHHHHHc----C-------CeeEEEcC---CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKY----G-------PLMHLKFG---LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~----g-------~~~~~~~~---~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++||+..- -..+.+++++.+| | ++....+. +.-.+...+++.++..+.-+...+.+|+
T Consensus 10 ~V~nLp~~--~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 10 YVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp EEESCCTT--CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 46666532 2345566777777 8 88887764 3456667899999999855665666654
No 176
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.35 E-value=26 Score=17.77 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=39.6
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.-++|++..- --.+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 17 NLYVKNLDDG--IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CEEEECCCTT--CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3457776533 2345577888899998776653 2345667899999999864 555555554
No 177
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=47.85 E-value=27 Score=17.79 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=40.4
Q ss_pred eeeeccccC----CChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccC-CC
Q 043968 43 FIGNLNLIG----PLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFAS-RP 102 (107)
Q Consensus 43 ~~g~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~-r~ 102 (107)
++|+++... .-..+.+++++.+||++..+.+. +.-.+...+++.++..+.. +...+.+ |+
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 566666431 22345677888999999888763 2345667899999988853 5556666 64
No 178
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=47.66 E-value=9.6 Score=20.95 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.9
Q ss_pred ecCHHHHHHHHhhccccccCCCCccc
Q 043968 81 GSSAEVAELLLKTHDISFASRPALLA 106 (107)
Q Consensus 81 ~~~p~~~~~vl~~~~~~~~~r~~~~~ 106 (107)
+.|.+.++++|..=..-|.+|++-++
T Consensus 70 l~~~~~v~KLF~~iapry~~R~GGYT 95 (116)
T 2zjr_K 70 IHDKDVVRKVMDEVAPKYAERPGGYT 95 (116)
T ss_dssp CCCHHHHHHHHHTHHHHTTTSCSCCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCCCee
Confidence 46899999999887888999998664
No 179
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=47.57 E-value=8.6 Score=19.69 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=36.8
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhhccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
++|++.. .--.+.+.+++.+||++..+.+. +.-.+...+++.++..+. +...+.++
T Consensus 13 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~ 76 (102)
T 2xs2_A 13 FVGGIDV--RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGK 76 (102)
T ss_dssp EEECCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTE
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCE
Confidence 4666652 23455578888999998776652 224556678888988887 55455554
No 180
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.53 E-value=22 Score=18.61 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCeeEEEcC-----CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 55 HVSIHSLSQKYGPLMHLKFG-----LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 55 ~~~~~~~~~~~g~~~~~~~~-----~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.+.+.+.+.+||.+..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 35667788889988776652 3345667789988888854 444555553
No 181
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=47.49 E-value=26 Score=17.38 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=35.6
Q ss_pred eeeeccccCCChHHHHHHHHHHcC--CeeEEEcC-----C----cCEEEecCHHHHHHHHh-hccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYG--PLMHLKFG-----L----SPVVVGSSAEVAELLLK-THDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~-----~----~~~v~~~~p~~~~~vl~-~~~~~~~~r~ 102 (107)
++||+..- --.+.+++++.+|| ++..+.+. + .-.+...+++.++..+. -+...+.+|.
T Consensus 5 ~V~nL~~~--~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 5 YIGNLTWW--TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEeCCCCC--CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 35555422 23456788889999 77655531 1 13455679999998884 4555677765
No 182
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=47.25 E-value=22 Score=17.48 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=34.5
Q ss_pred eeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 44 IGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 44 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
+|++.. .-..+.+.+++.+||++..+.+.. .-.+...+++ ++..+.. +...+.+|+
T Consensus 6 V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 6 VGNLVY--SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEECT--TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred ECCCCC--CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 455542 223445677888899887776532 2345567888 7777754 555566664
No 183
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.97 E-value=29 Score=17.96 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=37.4
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC--------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL--------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-+++++..- --.+.+++++.+||.+..+.+.. .-.|...+++.++..+.. +...+.+|
T Consensus 18 l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 18 VFVANLDYK--VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 356766532 34556788889999887666522 345667899999988863 44444443
No 184
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.82 E-value=14 Score=19.43 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=38.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCe---eEEEc------CCcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPL---MHLKF------GLSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~---~~~~~------~~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
-++|++..- --.+.+.+++.+||.+ +++-. -+.-.|...+++.++..+..+...+.+|+
T Consensus 18 l~V~nLp~~--~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 85 (114)
T 2cpy_A 18 AHITNIPFS--ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE 85 (114)
T ss_dssp EEEESCCTT--SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE
T ss_pred EEEeCcCCc--CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeE
Confidence 356776532 2345577888889887 34321 23456777899999999977666666654
No 185
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.77 E-value=20 Score=17.91 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=36.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEE-EcC---------CcCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHL-KFG---------LSPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
++|++..- -..+.+.+++.+||++..+ .+. +.-.+...+++.++..+.. +...+.+|
T Consensus 9 ~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (96)
T 1x5t_A 9 FIGNLDPE--IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 76 (96)
T ss_dssp EEECCCTT--CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 46666532 2356678888999987555 432 2345667899999999973 44444444
No 186
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=46.56 E-value=29 Score=17.66 Aligned_cols=57 Identities=21% Similarity=0.145 Sum_probs=37.5
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhh-ccccccC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKT-HDISFAS 100 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~-~~~~~~~ 100 (107)
-++|++..- --.+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+
T Consensus 18 l~v~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 18 LFVGMLNKQ--QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 357776532 2345678888999998777653 2345667899999998863 4434444
No 187
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=46.19 E-value=34 Score=18.66 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=35.9
Q ss_pred eeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHh-hccccccCC
Q 043968 44 IGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLK-THDISFASR 101 (107)
Q Consensus 44 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~-~~~~~~~~r 101 (107)
+|+++.- --.+.+.+++++||++..+.+. +.-.+...+++.++..+. -+...+.++
T Consensus 5 V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (166)
T 3md3_A 5 VGNLDKA--ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENN 69 (166)
T ss_dssp EEEEETT--CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ECCCCCc--CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC
Confidence 5555422 2345678889999998877762 224566779999998883 344444443
No 188
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.15 E-value=28 Score=17.39 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=37.8
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC----cCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL----SPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|++.. .--.+.+++++.+||++..+..-. .-.+...+++.++..+.-+...+.+|+
T Consensus 12 ~V~nl~~--~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 12 FVSGFPR--GVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp EEECCCT--TCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred EEECCCC--CCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 4666642 234566788889999887764321 234556799999999975555555543
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=46.02 E-value=47 Score=20.28 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=38.3
Q ss_pred ceeeeccccCC--ChHHHHHHHHHHcCCeeEEEcC------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGP--LPHVSIHSLSQKYGPLMHLKFG------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..-.+ +.-..+.+++.+||.+..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 12 l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 35777764322 2223356888999998877742 2456667899999988843 444445443
No 190
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=45.32 E-value=37 Score=18.53 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=41.1
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++.. .--.+.+.+++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|+
T Consensus 50 l~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 50 LKVDNLTY--RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp EEEECCCS--SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 35666643 234566788899999988877632 356778899999999964 555566654
No 191
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=45.02 E-value=9.6 Score=21.00 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=21.8
Q ss_pred ecCHHHHHHHHhhccccccCCCCccc
Q 043968 81 GSSAEVAELLLKTHDISFASRPALLA 106 (107)
Q Consensus 81 ~~~p~~~~~vl~~~~~~~~~r~~~~~ 106 (107)
+.|++.++++|..=..-|.+|++-++
T Consensus 70 l~~~~~v~KLF~~iapry~~R~GGYT 95 (118)
T 1gd8_A 70 LQDVKLVRKLFDEIAPRYRDRQGGYT 95 (118)
T ss_dssp SCCHHHHHHHHHTHHHHTSSCCSCCE
T ss_pred hCCHHHHHHHHHHHHHHhCCCCCCeE
Confidence 46889999999887888999998664
No 192
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=44.93 E-value=30 Score=17.42 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=38.8
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeE--------EEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMH--------LKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- --.+.+++++.+||.+.. +.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 16 l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 16 IFVQGLGEN--VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp EEEECCCSS--CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCC--CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 457776533 345567888899998765 4431 1245567799999998863 555666665
No 193
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=44.82 E-value=34 Score=17.96 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=39.0
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC-----C----cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-----L----SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~----~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++.. .--.+.+++++.+||++..+.+. + .-.|...+++.++..+.. +...+.+|+
T Consensus 9 lfV~nL~~--~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 9 VTFARLND--NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp EEEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCC--CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 35677653 23455678889999998877652 1 235667899999998854 444555543
No 194
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.57 E-value=32 Score=17.72 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=39.2
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC--CcCEEEecCHHHHHHHHhh-ccccccC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--LSPVVVGSSAEVAELLLKT-HDISFAS 100 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~v~~~~p~~~~~vl~~-~~~~~~~ 100 (107)
-++|++.. .--.+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+
T Consensus 18 l~V~nLp~--~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 18 VVVSGLPP--SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp EEEESCCS--SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 35777652 33456678899999998877763 4566777899999988864 4444444
No 195
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.32 E-value=32 Score=17.66 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=38.3
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-+++++..- --.+.+++++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|
T Consensus 25 l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 25 IYVGNLPPD--IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 356766532 34566788999999987777532 346677899999998843 44444443
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=43.96 E-value=44 Score=19.10 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=39.6
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC----CcCEEEecCHHHHHHHHh-hccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG----LSPVVVGSSAEVAELLLK-THDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~~~~p~~~~~vl~-~~~~~~~~r~ 102 (107)
++|++... .--.+.+.+++.+||++..+.+. +.-.+...+++.++..+. -+...+.+|+
T Consensus 7 ~v~nlp~~-~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 7 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp EEECCCSS-SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred EEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 35665431 12346678888999998888763 446777889999999886 3454555554
No 197
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=43.42 E-value=42 Score=18.65 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=39.2
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
+++++.. .--.+.+++++.+|| +..+.+. +.-.|...+++.++..+..+...+.+|+
T Consensus 50 fV~nLp~--~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 50 HMRGLPY--KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp ECCSCCT--TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred EEeCCCC--CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 4666542 334566788888999 4466653 2356778899999999966666777775
No 198
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.05 E-value=32 Score=17.28 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=38.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHc--CCeeEEEc-CCcCEEEecCHHHHHHHHh-hccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKY--GPLMHLKF-GLSPVVVGSSAEVAELLLK-THDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~--g~~~~~~~-~~~~~v~~~~p~~~~~vl~-~~~~~~~~r 101 (107)
-++|++..- --.+.+.+++.+| |.+..+.+ -+.-.|...+++.++..+. -+...+.+|
T Consensus 18 l~V~nLp~~--~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 18 LYVRNLMLS--TSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356776532 3345678889999 88887775 3445667789999999886 344444443
No 199
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.42 E-value=30 Score=16.72 Aligned_cols=59 Identities=10% Similarity=0.228 Sum_probs=40.4
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh--ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT--HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~--~~~~~~~r~ 102 (107)
-++|++..- --.+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 15 l~V~~l~~~--~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 15 LYVGGLGDT--ITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp EEEECCTTT--SCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred EEEcCCCCC--CCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 356776532 3455678888999998777763 3456667899999999974 555565554
No 200
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.70 E-value=35 Score=17.28 Aligned_cols=60 Identities=17% Similarity=0.057 Sum_probs=39.4
Q ss_pred CceeeeccccCCChHHHHHHHHHH-cCCeeEEEcC--------CcCEEEecCHHHHHHHHhh-cccc-ccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQK-YGPLMHLKFG--------LSPVVVGSSAEVAELLLKT-HDIS-FASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~-~~~~-~~~r~ 102 (107)
.-++|++..- --.+.+.+++.+ ||.+..+.+. +.-.+...+++.++..+.. +... +.+|+
T Consensus 11 ~l~V~nLp~~--~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 11 SLFVGDLTPD--VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CEEEECCCTT--CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 3457777533 334567888888 9988776652 2245667899999999864 4434 55554
No 201
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=41.56 E-value=35 Score=17.28 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=37.7
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC----------cCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL----------SPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|++..-. -.+.+++++.+|| +..+.+.. .-.+...+.+.++..+.-+...+.+|.
T Consensus 23 ~V~nLp~~~--t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 23 FLGNLPYDV--TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp EESCCSSCC--SSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 466665331 2233567778889 88877632 345667899999999855666677765
No 202
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.58 E-value=22 Score=18.11 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=37.1
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++|++..- --.+.+.+++.+||++..+.+.. .-.|...+++.++..+.. +...+.+|
T Consensus 18 l~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 18 IRVTNLSED--TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp EEEESCCTT--CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 356766532 23455678888899987776522 235667899999999863 43344443
No 203
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.77 E-value=37 Score=16.98 Aligned_cols=56 Identities=9% Similarity=0.134 Sum_probs=38.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---cCEEEecCHHHHHHHHhh-cccccc
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---SPVVVGSSAEVAELLLKT-HDISFA 99 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~v~~~~p~~~~~vl~~-~~~~~~ 99 (107)
-++|++..- --.+.+++++.+||++..+.+.. .-.|...+++.++..+.. +...+.
T Consensus 20 l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 20 LWVGGLGPN--TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp EEEECCCSS--CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 457776533 23456788899999988887643 355667899999988864 444555
No 204
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.77 E-value=37 Score=16.74 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=39.6
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.-+++++..- -..+.+++++.+||++..+.+.. .-.+...+++.++..+.. +...+.+|+
T Consensus 18 ~l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 18 TVYVSNLPFS--LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp SEEEESCCTT--SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred EEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3457776532 33455788889999988777632 346678899999998853 444455543
No 205
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=37.76 E-value=44 Score=17.30 Aligned_cols=59 Identities=17% Similarity=0.332 Sum_probs=39.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- -..+.+.+++.+||++..+.+. +.-.+...+++.++..+.. +...+.+|+
T Consensus 29 l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 29 LYVGSLHFN--ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp EEEECCCSS--CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 356776532 3455578888999998776652 2345667899999999853 555666665
No 206
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=37.72 E-value=52 Score=19.27 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=38.1
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC-------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
+++++..- --.+.+.+++.+||.+..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 107 ~v~nl~~~--~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 107 FIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp EEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred eECCcccc--cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 45555432 2356678889999998776652 1235667899999998864 555555554
No 207
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.54 E-value=41 Score=16.82 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=39.4
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCee-EEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLM-HLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
-++|++..- --.+.+++++.+||++. .+.+.. .-.+...+++.++..+.. +...+.+|.
T Consensus 12 l~V~nLp~~--~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 12 LWMGDLEPY--MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp EEECSCCTT--CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred EEEeCCCCC--CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 356776532 33556788889999877 666521 235557799999999964 555666665
No 208
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=37.37 E-value=61 Score=18.78 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=34.1
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC-----CcCEEEecCHHHHHHHHhh
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG-----LSPVVVGSSAEVAELLLKT 93 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~v~~~~p~~~~~vl~~ 93 (107)
.+||+.. .--.+.+++++.+||++-++.+. +.-.|...|++.++..+.+
T Consensus 50 ~VgNL~~--~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 50 IVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp EECSCCS--CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EEeCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 3676642 23455678999999998887763 2345667799988888754
No 209
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.01 E-value=44 Score=17.06 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=39.1
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCC-eeEEEcC----------CcCEEEecCHHHHHHHHhh--c-cccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGP-LMHLKFG----------LSPVVVGSSAEVAELLLKT--H-DISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~----------~~~~v~~~~p~~~~~vl~~--~-~~~~~~r~ 102 (107)
-++|++.. .--.+.+.+++.+||+ +..+.+. +.-.+...+++.++..+.. + ...+.+|+
T Consensus 11 l~V~nLp~--~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 11 LFIGGIPK--MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp EEEECCCT--TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred EEEeCCCC--cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 35677653 2334567888899998 8877764 2345667899999999875 2 24555554
No 210
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.98 E-value=46 Score=17.30 Aligned_cols=60 Identities=10% Similarity=0.059 Sum_probs=39.6
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh---ccccccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT---HDISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~---~~~~~~~r~ 102 (107)
.-++||+..- --.+.+++++.+||.+..+.+. +.-.|...+.+.++..+.. +...+.+|+
T Consensus 17 ~l~V~nLp~~--~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 17 VVHVRGLCES--VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp EEEEESCCSS--CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3457776532 2355678899999998887753 3456667799988888753 233355554
No 211
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=36.79 E-value=61 Score=18.64 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 54 PHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 54 ~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
..+.+.+++.+||++..+.+. +.-.|...+++.++..+.. +...+.+|+
T Consensus 101 te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 101 SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp CHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 455678888999998777763 2356677899999999863 444566654
No 212
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.57 E-value=44 Score=16.94 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=37.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC----------CcCEEEecCHHHHHHHHhhccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG----------LSPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
-++|++..- --.+.+.+++.+|| +..+.+. +.-.|...+++.++..+.-+...+.+|
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 84 (104)
T 1wi8_A 18 AFLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNK 84 (104)
T ss_dssp EEEESCCSS--CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTE
T ss_pred EEEeCCCCc--CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCc
Confidence 356776532 33455778888899 8777763 134566789999999985455555554
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.57 E-value=51 Score=17.68 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=25.0
Q ss_pred CCeeEEEc-CCcCEEEecCHHHHHHHHhhccccccC
Q 043968 66 GPLMHLKF-GLSPVVVGSSAEVAELLLKTHDISFAS 100 (107)
Q Consensus 66 g~~~~~~~-~~~~~v~~~~p~~~~~vl~~~~~~~~~ 100 (107)
|++..+.. +..-.+...|++.++.||++..+.+.+
T Consensus 38 G~V~~v~~~~~~AvItF~d~~va~rVL~k~~H~L~~ 73 (104)
T 2dhx_A 38 GPVLSWQRLGCGGVLTFREPADAERVLAQADHELHG 73 (104)
T ss_dssp CCEEEEEEETTEEEEEESSHHHHHHHHTCSCCBSSS
T ss_pred ceeeEEEEcCCcEEEEEcChHHHHHHhcCCcceecC
Confidence 36776665 444566677999999999886666554
No 214
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=35.79 E-value=72 Score=19.21 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=38.6
Q ss_pred eeeeccccCCChHHHHHHHHHHcC--CeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYG--PLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++||+..- --.+.+++++.+|| .+..+.+.. .-.|...+.+.++..+.. +...+.+|.
T Consensus 72 fVgnL~~~--~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 72 YIGNLTWW--TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred EEeCCCCC--CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 46665432 23556788899999 887776521 246667899999999864 555666654
No 215
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=35.24 E-value=29 Score=19.19 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=37.7
Q ss_pred eeeeccccCCChHHHHHHHHHHcCC---eeEEEc-----C---CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGP---LMHLKF-----G---LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~---~~~~~~-----~---~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|++.. .--.+.+++++.++|. +-.+.+ + +.-.|...+++.++..+..+...+.+|+
T Consensus 48 fVgnLp~--~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 48 KLRGLPW--SCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp EEESCCT--TCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred EEeCCCC--CCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 5666653 2344557888888987 433332 1 1346667899999999986666677664
No 216
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=34.71 E-value=71 Score=18.81 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHcCCeeEEEcC-------------CcCEEEecCHHHHHHHHh-hccccccCCC
Q 043968 52 PLPHVSIHSLSQKYGPLMHLKFG-------------LSPVVVGSSAEVAELLLK-THDISFASRP 102 (107)
Q Consensus 52 ~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~v~~~~p~~~~~vl~-~~~~~~~~r~ 102 (107)
.+..+-+.+.+.+||.+..+.+. |.-.+.-.+.+.++.... -+...|.+|+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 45556667778889998877762 223455678877776664 4677788886
No 217
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.49 E-value=50 Score=16.99 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=36.8
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCee--------EEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLM--------HLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
++|++..- --.+.+.+++.+||.+. .+.+.. .-.|...+++.++..+.. +...+.+|
T Consensus 19 ~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 19 YVQGLNDS--VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp EEECCCTT--CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred EEcCCCCC--CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 56776522 33456788889999876 344421 245667899999999864 54455554
No 218
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.94 E-value=52 Score=17.01 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=39.3
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhh---ccccccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKT---HDISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~---~~~~~~~r~ 102 (107)
.-++||+.. .--.+.+++++.+||.+..+.+. +.-.|...+.+.++..+.. +...+.+|+
T Consensus 17 ~l~V~nLp~--~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 17 VLHIRKLPG--EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp EEEEESCCT--TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 346777763 23345578888999998877763 3456667899988888763 333444543
No 219
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=33.85 E-value=52 Score=17.00 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=34.2
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEc---CCcCEEEecCHHHHHHHHhh
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKF---GLSPVVVGSSAEVAELLLKT 93 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~v~~~~p~~~~~vl~~ 93 (107)
+-++||+..- ---+.+++++.+||++..+++ -|.-.+--.+++.+++..+.
T Consensus 9 wL~VgNL~~~--~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 9 WLLLKNLTAQ--IDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp EEEEECCCTT--CCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred eEEEeCCCcc--CCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHH
Confidence 3456776533 223667899999999887775 33356667788777776643
No 220
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.66 E-value=59 Score=17.56 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---CcCEEEecCHHHHHHHHhhc---cccccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---LSPVVVGSSAEVAELLLKTH---DISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~~~~p~~~~~vl~~~---~~~~~~r~ 102 (107)
.-++||+..- --.+.+++++.+||.+..+.+. +.-.|...+.+.++..+..- ...+.+|+
T Consensus 33 ~LfVgNLp~~--vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 33 VIHIRKLPID--VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp EEEEESCCTT--CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 3467877633 3345678899999998777653 34566677999888887532 23455554
No 221
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=33.41 E-value=50 Score=16.94 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=37.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCC---eeEEEcC--------CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGP---LMHLKFG--------LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~--------~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
-++|++..-. -.+.+.+++..+|. +..+.+. +.-.|...+++.++..+..+...+.+|+
T Consensus 14 l~V~nLp~~~--te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 14 IRAQGLPWSC--TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp EEEECCCSSC--CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 3577765332 23345677777765 5555542 2345667899999999986666677665
No 222
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.54 E-value=57 Score=16.99 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHcCCeeEEEcCCcC-EEEecCHHHHHHHHhhccccccCC
Q 043968 53 LPHVSIHSLSQKYGPLMHLKFGLSP-VVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 53 ~~~~~~~~~~~~~g~~~~~~~~~~~-~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
+....+.+.+..||.+..+++-... .+...|.+.+...+.-+.....+|
T Consensus 27 ~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCe
Confidence 3556677888889999888875544 444558888888876555555544
No 223
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=32.47 E-value=19 Score=19.85 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.2
Q ss_pred ecCHHHHHHHHhhccccccCCCCccc
Q 043968 81 GSSAEVAELLLKTHDISFASRPALLA 106 (107)
Q Consensus 81 ~~~p~~~~~vl~~~~~~~~~r~~~~~ 106 (107)
+.|.+.++++|..=..-|.+|++-++
T Consensus 70 l~~~~~v~KLF~elapry~~R~GGYT 95 (120)
T 3r8s_N 70 TRDNEIVAKLFNELGPRFASRAGGYT 95 (120)
T ss_dssp SCCHHHHHHHHHTHHHHTTTCCSCCE
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCeE
Confidence 35899999999887778999988653
No 224
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=32.37 E-value=65 Score=17.67 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHcCCeeEEEc---CCcCEEEecCHHHHHHHHhhccccccC
Q 043968 51 GPLPHVSIHSLSQKYGPLMHLKF---GLSPVVVGSSAEVAELLLKTHDISFAS 100 (107)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~v~~~~p~~~~~vl~~~~~~~~~ 100 (107)
.....+...+.++++|.+..... ++.-.+...++..++..|..|...+.+
T Consensus 33 p~~~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g 85 (119)
T 1wwh_A 33 PQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGE 85 (119)
T ss_dssp CGGGHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred CHHHHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecC
Confidence 45567788888899999987775 233445567999999999998877653
No 225
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=31.15 E-value=21 Score=21.58 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=21.9
Q ss_pred ecCHHHHHHHHhhccccccCCCCccc
Q 043968 81 GSSAEVAELLLKTHDISFASRPALLA 106 (107)
Q Consensus 81 ~~~p~~~~~vl~~~~~~~~~r~~~~~ 106 (107)
+.|.+.++++|..=..-|.+|++-++
T Consensus 159 L~dk~~V~KLF~eiaPRY~dR~GGYT 184 (205)
T 3bbo_P 159 IYEKQIVHALFAEVPDRYGERNGGYT 184 (205)
T ss_dssp CCCTTHHHHHTTSSGGGGSSCCSCCE
T ss_pred hCCHHHHHHHHHHHHHHhCCCCCCee
Confidence 57889999999888888999998653
No 226
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.89 E-value=50 Score=15.88 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=36.4
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r 101 (107)
-++|++..- -..+.+++++.+||++..+.+.. .-.+...+++.++..+.. +...+.+|
T Consensus 8 l~v~nlp~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 8 LYIRGLQPG--TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp EEEESCCTT--CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 356666432 23455677888899987776522 245667899999988863 33344443
No 227
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.84 E-value=61 Score=16.86 Aligned_cols=52 Identities=10% Similarity=-0.000 Sum_probs=36.9
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---cCEEEecCHHHHHHHHhh
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---SPVVVGSSAEVAELLLKT 93 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~v~~~~p~~~~~vl~~ 93 (107)
.-.+||+..- .--.+.+++++.+||.+..+++.. .-.|...+++.++..+..
T Consensus 17 ~l~V~nLp~~-~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 17 VVHIMDFQRG-KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp EEEEESCCCS-SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCC-cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 3457887631 224556788899999998888643 456777899998888763
No 228
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=29.48 E-value=58 Score=16.14 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=34.6
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcC----CcCEEEecCHHHHHHHH
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG----LSPVVVGSSAEVAELLL 91 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~~~~p~~~~~vl 91 (107)
.-++|++.. .--.+.+++.+.+||++..+.+. +.-.+...+++.++.+.
T Consensus 13 ~l~V~~Lp~--~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~ 65 (89)
T 3d2w_A 13 KVFVGRCTE--DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLC 65 (89)
T ss_dssp EEEEESCCT--TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHT
T ss_pred EEEEeCCCC--CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHc
Confidence 345677653 23455678889999999888874 34567778999998643
No 229
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=29.44 E-value=46 Score=16.60 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcC-CeeEEEcC---------CcCEEEecCHHHHHHHHhhc--cccccCCC
Q 043968 54 PHVSIHSLSQKYG-PLMHLKFG---------LSPVVVGSSAEVAELLLKTH--DISFASRP 102 (107)
Q Consensus 54 ~~~~~~~~~~~~g-~~~~~~~~---------~~~~v~~~~p~~~~~vl~~~--~~~~~~r~ 102 (107)
-.+.+++++.+|| .+-.+.+. +.-.+...+++.++..+... ...+.+|+
T Consensus 14 te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 14 TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 3456778888899 66655542 12456678999999998643 33455543
No 230
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=29.15 E-value=62 Score=17.51 Aligned_cols=36 Identities=8% Similarity=0.189 Sum_probs=27.3
Q ss_pred HHHHHHcC-CeeEEEcCCcCEEEecCHHHHHHHHhhc
Q 043968 59 HSLSQKYG-PLMHLKFGLSPVVVGSSAEVAELLLKTH 94 (107)
Q Consensus 59 ~~~~~~~g-~~~~~~~~~~~~v~~~~p~~~~~vl~~~ 94 (107)
.++.++.| .+-|+++...|..++.++...+.+-...
T Consensus 33 ~~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G 69 (110)
T 3kgk_A 33 VQWLKQSGVQIERFNLAQQPMSFVQNEKVKAFIEASG 69 (110)
T ss_dssp HHHHHHHTCCEEEEETTTCTTHHHHSHHHHHHHHHHC
T ss_pred HHHHHHCCCeEEEEccccChHHHhcCHHHHHHHHHcC
Confidence 45666667 6889999999999988888877666443
No 231
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=28.83 E-value=78 Score=17.45 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=33.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC-----cCEEEecCHHHHHHHHh
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL-----SPVVVGSSAEVAELLLK 92 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~v~~~~p~~~~~vl~ 92 (107)
.+||+.. .--.+.+++++.+||.+.++.+.. +-.|.-.+++.++..+.
T Consensus 32 ~V~NL~~--~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~ 84 (130)
T 3zzy_A 32 IVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 84 (130)
T ss_dssp EEESCCS--CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHH
T ss_pred EECCCCC--CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHH
Confidence 4777642 234556789999999988777632 25666778888877764
No 232
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=28.66 E-value=76 Score=17.29 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=36.5
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHh-hccccccC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLK-THDISFAS 100 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~-~~~~~~~~ 100 (107)
.++++.. .-..+.+.+++.+||++..+.+.. .-.+...+++.++..+. -+...+.+
T Consensus 93 ~v~nl~~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 93 YVTNLPR--TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp EEESCCT--TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred EEeCCCC--CCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 4566543 233566788889999887666522 23566789999999886 34555655
No 233
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=28.55 E-value=65 Score=17.31 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=27.4
Q ss_pred HHHHHHcC-CeeEEEcCCcCEEEecCHHHHHHHHhh
Q 043968 59 HSLSQKYG-PLMHLKFGLSPVVVGSSAEVAELLLKT 93 (107)
Q Consensus 59 ~~~~~~~g-~~~~~~~~~~~~v~~~~p~~~~~vl~~ 93 (107)
.++.++.| .+-|+++...|..++.++...+.+-..
T Consensus 36 ~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~ 71 (106)
T 3ktb_A 36 IESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQKH 71 (106)
T ss_dssp HHHHHHTTCCCEEEETTTCTTHHHHSHHHHHHHHTT
T ss_pred HHHHHHCCCEEEEEccccChHHHhcCHHHHHHHHHc
Confidence 45666667 688999999999999999888766644
No 234
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=28.20 E-value=95 Score=18.23 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=35.3
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC----CcCEEEecCHHHHHHHHh
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG----LSPVVVGSSAEVAELLLK 92 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~~~~p~~~~~vl~ 92 (107)
-++||+... .--.+.+.+++.+||++..+.+. +.-.|.-.+++.++..+.
T Consensus 7 l~V~nL~~~-~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 7 LMVYGLDQS-KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp EEEECCCTT-TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHH
T ss_pred EEEeCCCcc-cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 357777522 12234678888999999888763 346777889999988875
No 235
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=26.67 E-value=86 Score=17.20 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=34.7
Q ss_pred eeeeccccCCChHHHHHHHHHHc----C-------CeeEEEcC---CcCEEEecCHHHHHHHHhhccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKY----G-------PLMHLKFG---LSPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~----g-------~~~~~~~~---~~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
++|++..- --.+.+.+++.++ | ++....++ +.-.+...+++.++..+.-+...+.+|
T Consensus 8 ~V~nLp~~--~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 8 YVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp EEESCCTT--CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred EEcCCCcc--cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 45665433 2233445555555 6 67666653 345666789999999995555555554
No 236
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.41 E-value=68 Score=15.95 Aligned_cols=58 Identities=10% Similarity=0.225 Sum_probs=37.2
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCe-eEEEc---CCcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPL-MHLKF---GLSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~-~~~~~---~~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
++|++..- --.+.+++++.+||++ ..+.. -+.-.+...+++.++..+.. +...+.+|+
T Consensus 23 ~V~nL~~~--~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 23 YVGNLPRD--ARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp EEECCCTT--CCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEeCCCCc--CcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 56766522 3355678888999976 23222 23455667899999988855 555666664
No 237
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.33 E-value=67 Score=15.84 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=39.4
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEE-EcCCc-----CEEEecCHHHHHHHHh-hccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHL-KFGLS-----PVVVGSSAEVAELLLK-THDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~-----~~v~~~~p~~~~~vl~-~~~~~~~~r~ 102 (107)
-++|++..- --.+.+++++.+||++..+ .+... -.+...+++.++..+. -+...+.+|+
T Consensus 18 l~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 18 LQIRNIPPH--LQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp EEEEEECSS--SCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEcCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457777533 3355578888999998877 33221 4566789999988885 3555666665
No 238
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.19 E-value=77 Score=16.60 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=36.6
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
.+|++.. .--.+.+++++..| .+..+.+. +.-.|...+++.++..+..+...+.+|.
T Consensus 20 ~V~nLp~--~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 84 (109)
T 2dnn_A 20 SVHGMPF--SAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRY 84 (109)
T ss_dssp EEECCCS--SCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEE
T ss_pred EEeCCCC--CCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 4666652 23344566777777 55555542 2356777899999999976666666663
No 239
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.09 E-value=79 Score=16.61 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHcCCeeEEEcCCcCE-EEecCHHHHHHHHhhccccccCC
Q 043968 52 PLPHVSIHSLSQKYGPLMHLKFGLSPV-VVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 52 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
.+....+.+.+..||.+..+++-.... +...|.+.+...+.-+.....+|
T Consensus 35 ~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 35 EDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCCe
Confidence 344556778888899888877644434 44558887777776555555554
No 240
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.03 E-value=84 Score=16.91 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=36.9
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCe------eEEEc---C---CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPL------MHLKF---G---LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~------~~~~~---~---~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
.++++.. .--.+.+++++.+||++ .++-. + +.-.|...+++.++..+..+...+.+|.
T Consensus 27 ~V~nLp~--~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~ 96 (123)
T 2dha_A 27 RMRGLPF--TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRY 96 (123)
T ss_dssp EECSCCT--TCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCE
T ss_pred EEeCCCC--CCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeE
Confidence 4555542 33455678888888864 22221 1 2245667799999999987776777763
No 241
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=25.02 E-value=17 Score=18.14 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=35.0
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCee---EEE--cC----CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLM---HLK--FG----LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~---~~~--~~----~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
+++++.. .--.+.+++++.+||.+. ... -. +.-.+...+++.++..+.. +...+.+|+
T Consensus 19 ~V~nlp~--~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 19 KVQNMPF--TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEECCCT--TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 4666642 233455677888888642 221 11 2245667899999999864 555666654
No 242
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.90 E-value=84 Score=16.53 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=37.5
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCe---eEEEc--C----CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPL---MHLKF--G----LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~---~~~~~--~----~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
-++|++..- --.+.+.+++.+||.+ ..+.. . +.-.|...+++.++..+.-+...+.+|+
T Consensus 28 l~V~nLp~~--~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 28 VYLKGLPFE--AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp EEEECCCTT--CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 357776533 2345567788888864 23321 1 2245667799999999986666777765
No 243
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.46 E-value=81 Score=16.17 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=36.6
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCe----eEEEc--C---CcCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPL----MHLKF--G---LSPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~----~~~~~--~---~~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.-++|++..- -..+.+.+++.+||.+ ..... + +.-.|...+++.++..+.. +...+.+|+
T Consensus 27 ~l~V~nLp~~--~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 27 VLYLKNLSPR--VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp EEEEECCCTT--CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3457776532 2345566777888865 33332 1 2345667899999999864 555555554
No 244
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.63 E-value=85 Score=16.09 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=36.3
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC--------cCEEEecCHHHHHHHHhh-cccccc
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL--------SPVVVGSSAEVAELLLKT-HDISFA 99 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~v~~~~p~~~~~vl~~-~~~~~~ 99 (107)
-++|++..- --.+.+++++.+||.+..+.+.. .-.+...+++.++..+.. +...+.
T Consensus 28 l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 28 LYISNLPLS--MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp EEEESCCTT--CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 356666532 23455788888999887766521 245667899999988863 444453
No 245
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.46 E-value=75 Score=15.40 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=33.7
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcC----CcCEEEecCHHHHHHHHh
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG----LSPVVVGSSAEVAELLLK 92 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~~~~p~~~~~vl~ 92 (107)
++|++..- --.+.+++++.+||++..+.+. +.-.+...+++.++.+..
T Consensus 9 ~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 9 FVGRCTGD--MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp EEESCCSS--SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT
T ss_pred EEeCCCCC--CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc
Confidence 46666432 2345678888999998888873 346777889999987543
No 246
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.90 E-value=86 Score=15.90 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=35.5
Q ss_pred CceeeeccccCCChHHHHHHHHHHcCCeeEEEcC---------CcCEEEecCHHHHHHHHhh
Q 043968 41 WPFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG---------LSPVVVGSSAEVAELLLKT 93 (107)
Q Consensus 41 ~p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~p~~~~~vl~~ 93 (107)
.-++|++..- --.+.+.+++.+||++..+.+. +.-.|...+++.++..+..
T Consensus 17 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 17 TVFIRNLSFD--SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 3457776533 3455678888999998887764 1245667799999998864
No 247
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.72 E-value=30 Score=18.30 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=36.1
Q ss_pred eeeeccccCCChHHHHHHHHHHcCC---eeEEEc-----C---CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGP---LMHLKF-----G---LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~---~~~~~~-----~---~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
++|++..- --.+.+.+++.+||. +..+.+ + +.-.|...+++.++..+..+...+.+|+
T Consensus 21 ~V~nLp~~--~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 21 KLRGLPWS--CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp EEESCCTT--CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 46666533 334557778888886 433332 1 1346667899999999876665666553
No 248
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=22.25 E-value=87 Score=15.74 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=34.7
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT 93 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~ 93 (107)
-++|++..- --.+.+++++.+||++..+.+.. .-.|...+++.++..+..
T Consensus 16 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 16 LFIGQIPRN--LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 356776532 34456788899999988877633 245667799999988853
No 249
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.76 E-value=1e+02 Score=16.47 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=35.3
Q ss_pred Ccee--eeccccCCChHHHHHHHHHHcCCeeEEEcCC---cCEEEecCHHHHHHHHhh
Q 043968 41 WPFI--GNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---SPVVVGSSAEVAELLLKT 93 (107)
Q Consensus 41 ~p~~--g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~v~~~~p~~~~~vl~~ 93 (107)
.-++ |++.. .-..+.+++.+.+||.+-.+.+.. .-.|...+++.++..+.+
T Consensus 27 ~L~V~Ng~L~~--~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 27 SLVVANGGLGN--GVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp EEEEETCTGGG--TCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCC--CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 3456 54542 223467889999999988888743 356667799988888854
No 250
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=21.43 E-value=1.1e+02 Score=16.53 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=38.3
Q ss_pred eeeeccccCCChHHHHHHHHHHcCCeeEEEcCC---------cCEEEecCHHHHHHHHhh-ccccccCCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFGL---------SPVVVGSSAEVAELLLKT-HDISFASRP 102 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~~~~p~~~~~vl~~-~~~~~~~r~ 102 (107)
.++++.. .-..+.+.+.+.+||++..+.+.. .-.+...+++.++..+.. +...+.+|.
T Consensus 92 ~v~nl~~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 92 YVSGLPK--TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred EECCCCC--cCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 4555542 223566788899999987666521 235667899999998863 555676664
No 251
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=21.05 E-value=1.1e+02 Score=17.14 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=34.0
Q ss_pred eeeeccccCCChHHHHHHHHHHc----C-------CeeEEEcC---CcCEEEecCHHHHHHHHhhccccccCC
Q 043968 43 FIGNLNLIGPLPHVSIHSLSQKY----G-------PLMHLKFG---LSPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 43 ~~g~~~~~~~~~~~~~~~~~~~~----g-------~~~~~~~~---~~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
++|++..- --.+.+.+++.+| | .+.....+ +.-.|...+++.++..+.-+...+.+|
T Consensus 8 ~V~nLp~~--~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 8 YVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp EEESCCTT--CCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred EEcCCCCC--CCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 45665433 1233445556666 5 66666653 345677889999999985455444444
No 252
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.91 E-value=81 Score=15.35 Aligned_cols=57 Identities=11% Similarity=-0.010 Sum_probs=35.1
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCeeEEEcC--------CcCEEEecCHHHHHHHHhhccccccCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLMHLKFG--------LSPVVVGSSAEVAELLLKTHDISFASR 101 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~~~~p~~~~~vl~~~~~~~~~r 101 (107)
-++|++..- --.+.+++++.+| ++..+.+. +.-.+...+++.++..+.-+...+.+|
T Consensus 13 l~v~nLp~~--~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr 77 (91)
T 2dgw_A 13 VKLRGAPFN--VTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGR 77 (91)
T ss_dssp EEEECCCSS--CCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTE
T ss_pred EEEECCCCC--CCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCc
Confidence 356666532 2344567777778 66555431 124556679999999987555555555
No 253
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=20.82 E-value=72 Score=14.87 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=13.0
Q ss_pred cCHHHHHHHHhhccccc
Q 043968 82 SSAEVAELLLKTHDISF 98 (107)
Q Consensus 82 ~~p~~~~~vl~~~~~~~ 98 (107)
.|.|.++.|+..+..+.
T Consensus 26 lD~evI~~Vl~a~~G~~ 42 (54)
T 1p3q_Q 26 MDPSLIEDVCIAAASRI 42 (54)
T ss_dssp SCHHHHHHHHHHSCC--
T ss_pred CCHHHHHHHHHHcCCCH
Confidence 69999999998876543
No 254
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.51 E-value=73 Score=14.99 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=12.4
Q ss_pred cCHHHHHHHHhhcccc
Q 043968 82 SSAEVAELLLKTHDIS 97 (107)
Q Consensus 82 ~~p~~~~~vl~~~~~~ 97 (107)
.|.+.++.+|.++..+
T Consensus 23 ld~~~I~~vL~a~~gd 38 (59)
T 1wgl_A 23 MDQEVIRSVLEAQRGN 38 (59)
T ss_dssp SCHHHHHHHHTTTTTC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 5888899999777654
No 255
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=20.12 E-value=1.2e+02 Score=16.46 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=39.3
Q ss_pred ceeeeccccCCChHHHHHHHHHHcCCee--EEEcC--------CcCEEEecCHHHHHHHHhhccccccCCC
Q 043968 42 PFIGNLNLIGPLPHVSIHSLSQKYGPLM--HLKFG--------LSPVVVGSSAEVAELLLKTHDISFASRP 102 (107)
Q Consensus 42 p~~g~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~--------~~~~v~~~~p~~~~~vl~~~~~~~~~r~ 102 (107)
-++|++.. .--.+.+++++.+| .+. .+.+. +.-.|...+++.++..+..+...+.+|+
T Consensus 45 lfVgnLp~--~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~ 112 (126)
T 2hgm_A 45 VRLRGLPF--GCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 112 (126)
T ss_dssp EEEECCCT--TCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC
T ss_pred EEEeCCCC--CCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE
Confidence 35677653 23445567788888 555 55542 2356778899999999987766777775
No 256
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=20.11 E-value=1.1e+02 Score=16.55 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=18.1
Q ss_pred CcCEEEecCHHHHHHHHhhcccc
Q 043968 75 LSPVVVGSSAEVAELLLKTHDIS 97 (107)
Q Consensus 75 ~~~~v~~~~p~~~~~vl~~~~~~ 97 (107)
+..++.++||+....+++.+...
T Consensus 50 ~~~il~~cnP~~a~~~l~~~p~~ 72 (129)
T 1j3m_A 50 PYLILGACNPNLAARALEALPEI 72 (129)
T ss_dssp CEEEEEEECHHHHHHHHHHCGGG
T ss_pred CeEEEEECCHHHHHHHHHhCHHH
Confidence 44567799999999999877543
Done!