BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043969
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 28/160 (17%)
Query: 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLN 139
+L + MC+K G + + RL DE R+G + YN+LL+V +L
Sbjct: 28 LLKQKLDMCSKK--GDVLEALRLYDEARRNGVQLSQYHYNVLLYV----------CSLAE 75
Query: 140 HMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAG 199
E +P GLSR ++ F +M +P+ +T +A
Sbjct: 76 AATESSPNP----------GLSRGFDI------FKQMIVDKVVPNEATFTNGARLAVAKD 119
Query: 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239
+ E A D+ M G P + +Y + GFC G D+A
Sbjct: 120 DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 28/160 (17%)
Query: 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLN 139
+L + C+K G + + RL DE R+G + YN+LL+V +L
Sbjct: 28 LLKQKLDXCSKK--GDVLEALRLYDEARRNGVQLSQYHYNVLLYV----------CSLAE 75
Query: 140 HMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAG 199
E +P GLSR ++ F + +P+ +T +A
Sbjct: 76 AATESSPNP----------GLSRGFDI------FKQXIVDKVVPNEATFTNGARLAVAKD 119
Query: 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239
+ E A D G P + +Y + GFC G D+A
Sbjct: 120 DPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKA 159
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 119 NILLHVLGKGDKPLAALNLLNHMKEVG-FDPSVLHFTTLMDGLSRAGNL--DACKYFFDE 175
+LL+VL D+PL L L KEVG +DP++L +L+ L++ L +A K D
Sbjct: 237 RVLLYVLDAADEPLKTLETLR--KEVGAYDPALLRRPSLV-ALNKVDLLEEEAVKALADA 293
Query: 176 MANKGC 181
+A +G
Sbjct: 294 LAREGL 299
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALN-LLNHM 141
YN VM R G + +L + +G +PD +Y L +G+ D+ + L M
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 142 KEVGFDPSVLHFTTLMDGLSRAGNLDA 168
+ G L L+ RA L A
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKA 254
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQ----FHRLL 103
YNA++ +K + +V + D G PD+L+Y + +G+ DQ R L
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC---MGRQDQDAGTIERCL 224
Query: 104 DEMGRSGF 111
++M + G
Sbjct: 225 EQMSQEGL 232
>pdb|1PSC|A Chain A, Phosphotriesterase From Pseudomonas Diminuta
pdb|1PSC|B Chain B, Phosphotriesterase From Pseudomonas Diminuta
Length = 365
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 265 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 300
>pdb|3E3H|A Chain A, Crystal Structure Of The Op Hydrolase Mutant From
Brevundimonas Diminuta
pdb|3E3H|B Chain B, Crystal Structure Of The Op Hydrolase Mutant From
Brevundimonas Diminuta
Length = 336
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 236 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 271
>pdb|1QW7|A Chain A, Structure Of An Engineered Organophosphorous Hydrolase
With Increased Activity Toward Hydrolysis Of
Phosphothiolate Bonds
pdb|1QW7|B Chain B, Structure Of An Engineered Organophosphorous Hydrolase
With Increased Activity Toward Hydrolysis Of
Phosphothiolate Bonds
Length = 336
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 236 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 271
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 235 KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIH 289
F E M K ME L YN V N RN E HE++ + + G YI+
Sbjct: 105 SFYEFMAMYKFME--------LAYNLFVMNDRNRSGTLEPHEILPALQQLGFYIN 151
>pdb|1JGM|A Chain A, High Resolution Structure Of The Cadmium-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1JGM|B Chain B, High Resolution Structure Of The Cadmium-Containing
Phosphotriesterase From Pseudomonas Diminuta
Length = 336
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 236 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 271
>pdb|2OQL|A Chain A, Structure Of Phosphotriesterase Mutant H254qH257F
pdb|2OQL|B Chain B, Structure Of Phosphotriesterase Mutant H254qH257F
Length = 331
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 231 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 266
>pdb|1PTA|A Chain A, Three-Dimensional Structure Of Phosphotriesterase: An
Enzyme Capable Of Detoxifying Organophosphate Nerve
Agents
Length = 327
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 230 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 265
>pdb|1HZY|A Chain A, High Resolution Structure Of The Zinc-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1HZY|B Chain B, High Resolution Structure Of The Zinc-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0B|A Chain A, High Resolution Structure Of The Manganese-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0B|B Chain B, High Resolution Structure Of The Manganese-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0D|A Chain A, High Resolution Structure Of The ZincCADMIUM-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0D|B Chain B, High Resolution Structure Of The ZincCADMIUM-Containing
Phosphotriesterase From Pseudomonas Diminuta
Length = 332
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 232 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 267
>pdb|1DPM|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog Diethyl
4- Methylbenzylphosphonate
pdb|1DPM|B Chain B, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog Diethyl
4- Methylbenzylphosphonate
Length = 329
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 231 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 266
>pdb|2O4Q|A Chain A, Structure Of Phosphotriesterase Mutant G60a
pdb|2O4Q|B Chain B, Structure Of Phosphotriesterase Mutant G60a
pdb|2O4Q|K Chain K, Structure Of Phosphotriesterase Mutant G60a
pdb|2O4Q|P Chain P, Structure Of Phosphotriesterase Mutant G60a
pdb|3CS2|A Chain A, Crystal Structure Of Pte G60a Mutant
pdb|3CS2|B Chain B, Crystal Structure Of Pte G60a Mutant
pdb|3CS2|K Chain K, Crystal Structure Of Pte G60a Mutant
pdb|3CS2|P Chain P, Crystal Structure Of Pte G60a Mutant
Length = 331
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 232 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 267
>pdb|2O4M|A Chain A, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|B Chain B, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|C Chain C, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|P Chain P, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
Length = 331
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 232 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 267
>pdb|2OB3|A Chain A, Structure Of Phosphotriesterase Mutant H257yL303T
pdb|2OB3|B Chain B, Structure Of Phosphotriesterase Mutant H257yL303T
Length = 330
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 231 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 266
>pdb|1EYW|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Triethylphosphate
pdb|1EZ2|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Diisopropylmethyl Phosphonate.
pdb|1EZ2|B Chain B, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Diisopropylmethyl Phosphonate.
pdb|3CAK|A Chain A, X-Ray Structure Of Wt Pte With Ethyl Phosphate
pdb|3CAK|B Chain B, X-Ray Structure Of Wt Pte With Ethyl Phosphate
Length = 331
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 231 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 266
>pdb|1P6B|A Chain A, X-Ray Structure Of Phosphotriesterase, Triple Mutant
H254gH257WL303T
pdb|1P6B|B Chain B, X-Ray Structure Of Phosphotriesterase, Triple Mutant
H254gH257WL303T
pdb|1P6C|A Chain A, Crystal Structure Of Phosphotriesterase Triple Mutant
H254gH257WL303T COMPLEXED WITH
Diisopropylmethylphosphonate
pdb|1P6C|B Chain B, Crystal Structure Of Phosphotriesterase Triple Mutant
H254gH257WL303T COMPLEXED WITH
Diisopropylmethylphosphonate
Length = 336
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
NA ALLGIR ++ + + + D+GY IL N
Sbjct: 236 NASASALLGIRSWQTRALLIKALIDQGYMKQILVSN 271
>pdb|3ILH|A Chain A, Crystal Structure Of Two Component Response Regulator From
Cytophaga Hutchinsonii
Length = 146
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 133 AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMI 192
AA+N LN + G PS++ M G++ +D K F M NK +VC ++
Sbjct: 46 AAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKS----IVC---LL 98
Query: 193 TSYIAAGELEKAQ--DLFDGMITKGQLPNVFT--YNSMI 227
+S + + KA+ D D ++K N YN ++
Sbjct: 99 SSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVL 137
>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With
Mn2+, K+, And Pyruvate
Length = 530
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 270 KLAEAHEVIRHMVEKGKYIHLVSKFKRYK 298
K A+ HEV + + EKGK I ++SK + ++
Sbjct: 246 KAADVHEVRKILGEKGKNIKIISKIENHE 274
>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|B Chain B, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|C Chain C, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|D Chain D, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|E Chain E, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|F Chain F, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|G Chain G, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|H Chain H, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
Length = 530
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 270 KLAEAHEVIRHMVEKGKYIHLVSKFKRYK 298
K A+ HEV + + EKGK I ++SK + ++
Sbjct: 246 KAADVHEVRKILGEKGKNIKIISKIENHE 274
>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|B Chain B, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|C Chain C, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|D Chain D, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|E Chain E, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|F Chain F, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|G Chain G, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|H Chain H, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1A5U|A Chain A, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|B Chain B, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|C Chain C, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|D Chain D, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|E Chain E, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|F Chain F, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|G Chain G, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|H Chain H, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A49|A Chain A, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|B Chain B, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|C Chain C, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|D Chain D, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|E Chain E, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|F Chain F, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|G Chain G, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|H Chain H, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
Length = 530
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 270 KLAEAHEVIRHMVEKGKYIHLVSKFKRYK 298
K A+ HEV + + EKGK I ++SK + ++
Sbjct: 246 KAADVHEVRKILGEKGKNIKIISKIENHE 274
>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|B Chain B, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|C Chain C, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|D Chain D, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|E Chain E, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|F Chain F, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|G Chain G, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|H Chain H, Recombinant Rabbit Muscle Pyruvate Kinase
Length = 530
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 270 KLAEAHEVIRHMVEKGKYIHLVSKFKRYK 298
K A+ HEV + + EKGK I ++SK + ++
Sbjct: 246 KAADVHEVRKILGEKGKNIKIISKIENHE 274
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|B Chain B, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|C Chain C, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|D Chain D, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|E Chain E, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|F Chain F, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|G Chain G, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|H Chain H, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase
Length = 530
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 270 KLAEAHEVIRHMVEKGKYIHLVSKFKRYK 298
K A+ HEV + + EKGK I ++SK + ++
Sbjct: 246 KAADVHEVRKILGEKGKNIKIISKIENHE 274
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|B Chain B, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|C Chain C, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|D Chain D, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|E Chain E, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|F Chain F, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|G Chain G, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|H Chain H, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
Length = 531
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 270 KLAEAHEVIRHMVEKGKYIHLVSKFKRYK 298
K A+ HEV + + EKGK I ++SK + ++
Sbjct: 247 KAADVHEVRKILGEKGKNIKIISKIENHE 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,133,393
Number of Sequences: 62578
Number of extensions: 387090
Number of successful extensions: 1122
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 28
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)