BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043969
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 217/299 (72%), Positives = 262/299 (87%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
MI++G+PTTA TFN+LICTCGE GLAR VVE+FIKSK FN+RP+K+SYNAILH+LLG++Q
Sbjct: 178 MIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQ 237
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
YKLI+WVY+QM ++G+ PD+LTYNIVM A +RLGK D+ +RLLDEM + GFSPD +TYNI
Sbjct: 238 YKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNI 297
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
LLH L G+KPLAALNLLNHM+EVG +P V+HFTTL+DGLSRAG L+ACKYF DE G
Sbjct: 298 LLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVG 357
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
C PDVVCYTVMIT YI+ GELEKA+++F M KGQLPNVFTYNSMIRGFCMAGKF EAC
Sbjct: 358 CTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEAC 417
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVSKFKRYKR 299
++KEMESRGCNPNF+VY+TLV+NL+NAGK+ EAHEV++ MVEKG Y+HL+SK K+Y+R
Sbjct: 418 ALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKGHYVHLISKLKKYRR 476
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 213/299 (71%), Positives = 261/299 (87%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M+++GFPTTARTFN+LIC+CGE GLA++ V +F+KSK FN+RPFK+SYNAIL++LLG++Q
Sbjct: 175 MVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQ 234
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
YKLIEWVY+QM ++G++PD+LTYNI++ YRLGK+D+F RL DEM R GFSPD +TYNI
Sbjct: 235 YKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNI 294
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
LLH+LGKG+KPLAAL LNHMKEVG DPSVLH+TTL+DGLSRAGNL+ACKYF DEM G
Sbjct: 295 LLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAG 354
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
C PDVVCYTVMIT Y+ +GEL+KA+++F M KGQLPNVFTYNSMIRG CMAG+F EAC
Sbjct: 355 CRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREAC 414
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVSKFKRYKR 299
++KEMESRGCNPNF+VY+TLVS LR AGKL+EA +VIR MV+KG Y+HLV K +Y+R
Sbjct: 415 WLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGHYVHLVPKMMKYRR 473
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 9/302 (2%)
Query: 3 ENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHAL--LGIRQ 60
E+GF ++ LI G R+ V F K + +P +YN IL+ +G
Sbjct: 201 EDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPW 260
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
K+ V ++M +G APD TYN ++ R + ++ +EM +GFS D TYN
Sbjct: 261 NKITSLV-EKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNA 319
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
LL V GK +P A+ +LN M GF PS++ + +L+ +R G LD ++MA KG
Sbjct: 320 LLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKG 379
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
PDV YT +++ + AG++E A +F+ M G PN+ T+N+ I+ + GKF E
Sbjct: 380 TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMM 439
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM------VEKGKYIHLVSKF 294
+ E+ G +P+ + +NTL++ G +E V + M E+ + L+S +
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAY 499
Query: 295 KR 296
R
Sbjct: 500 SR 501
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 1/286 (0%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M +G A T+N LI C L ++ + F + K F K +YNA+L +
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHR 329
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
K V +M G++P I+TYN ++ A R G LD+ L ++M G PD TY
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
LL + K +A+++ M+ G P++ F + G FDE+ G
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG 449
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
PD+V + ++ + G + +F M G +P T+N++I + G F++A
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
T+ + M G P+ YNT+++ L G ++ +V+ M E G+
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM-EDGR 554
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 129/302 (42%), Gaps = 45/302 (14%)
Query: 1 MIENGFPTTARTFNILICT---CGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M GF TFN LI CG A V R + + + P ++YN +L AL
Sbjct: 480 MKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV---TPDLSTYNTVLAALAR 536
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYN--------------------------------- 84
++ E V +M D P+ LTY
Sbjct: 537 GGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596
Query: 85 ----IVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNH 140
+++C+K L L + R E+ GFSPD T N ++ + G+ A +L++
Sbjct: 597 LKTLVLVCSKCDL--LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDY 654
Query: 141 MKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE 200
MKE GF PS+ + +LM SR+ + + E+ KG PD++ Y +I +Y
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTR 714
Query: 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNT 260
+ A +F M G +P+V TYN+ I + F+EA +++ M GC PN YN+
Sbjct: 715 MRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNS 774
Query: 261 LV 262
+V
Sbjct: 775 IV 776
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 136/309 (44%), Gaps = 35/309 (11%)
Query: 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQM 71
T+N L+ G+ G+ +V F + K F P + ++N ++ A ++ VY++M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Query: 72 SDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDK- 130
D G PD+ TYN V+ A R G +Q ++L EM P+ TY LLH G +
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEI 575
Query: 131 ----------------PLAAL-----------NLL-------NHMKEVGFDPSVLHFTTL 156
P A L +LL + +KE GF P + ++
Sbjct: 576 GLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSM 635
Query: 157 MDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ 216
+ R + D M +G P + Y ++ + + + K++++ ++ KG
Sbjct: 636 VSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGI 695
Query: 217 LPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHE 276
P++ +YN++I +C + +A + EM + G P+ + YNT + + EA
Sbjct: 696 KPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIG 755
Query: 277 VIRHMVEKG 285
V+R+M++ G
Sbjct: 756 VVRYMIKHG 764
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 127/277 (45%)
Query: 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
GF T+N L+ G+ ++ ++ + L F P +YN+++ A
Sbjct: 309 GFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEA 368
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
+ QM+++G PD+ TY ++ R GK++ + +EM +G P+ T+N + +
Sbjct: 369 MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
G K + + + + G P ++ + TL+ + G F EM G +P+
Sbjct: 429 YGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488
Query: 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244
+ +I++Y G E+A ++ M+ G P++ TYN+++ G ++++ ++
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLA 548
Query: 245 EMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
EME C PN L Y +L+ N ++ H + +
Sbjct: 549 EMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV 585
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 120/263 (45%), Gaps = 3/263 (1%)
Query: 25 LARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR-QYKLIEWVYQQMSDEGYAPDILTY 83
LA + + F+K K + NS AI+ ++LG + ++ + ++G++ D+ +Y
Sbjct: 153 LALRAFDWFMKQKDYQSM-LDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSY 211
Query: 84 NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAAL-NLLNHMK 142
++ A G+ + + +M G P TYN++L+V GK P + +L+ MK
Sbjct: 212 TSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMK 271
Query: 143 EVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202
G P + TL+ R F+EM G D V Y ++ Y + +
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPK 331
Query: 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262
+A + + M+ G P++ TYNS+I + G DEA + +M +G P+ Y TL+
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391
Query: 263 SNLRNAGKLAEAHEVIRHMVEKG 285
S AGK+ A + M G
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAG 414
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 120/285 (42%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M+ NGF + T+N LI G+ + +E + +P +Y +L +
Sbjct: 340 MVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ ++++M + G P+I T+N + GK + ++ DE+ G SPD T+N
Sbjct: 400 VESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNT 459
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
LL V G+ + MK GF P F TL+ SR G+ + + M + G
Sbjct: 460 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG 519
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
PD+ Y ++ + G E+++ + M PN TY S++ + +
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMH 579
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
++ +E+ S P ++ TLV L EA + E+G
Sbjct: 580 SLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERG 624
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 2/190 (1%)
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
E + ++ + G++PDI T N ++ R + + + +LD M GF+P TYN L+++
Sbjct: 614 ERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYM 673
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
+ + +L + G P ++ + T++ R + F EM N G +PD
Sbjct: 674 HSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPD 733
Query: 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244
V+ Y I SY A E+A + MI G PN TYNS++ G+C + DEA ++
Sbjct: 734 VITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVE 793
Query: 245 EMESRGCNPN 254
++ R +P+
Sbjct: 794 DL--RNLDPH 801
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 131/309 (42%), Gaps = 35/309 (11%)
Query: 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQM 71
TFN I G G ++++ F + + P ++N +L + V+++M
Sbjct: 421 TFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480
Query: 72 SDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG--- 128
G+ P+ T+N ++ A R G +Q + M +G +PD TYN +L L +G
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540
Query: 129 ---DKPLAA----------------LNLLNHMKEVGF-------------DPSVLHFTTL 156
+K LA L+ + KE+G +P + TL
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTL 600
Query: 157 MDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ 216
+ S+ L + F E+ +G PD+ M++ Y + KA + D M +G
Sbjct: 601 VLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660
Query: 217 LPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHE 276
P++ TYNS++ + F ++ +++E+ ++G P+ + YNT++ ++ +A
Sbjct: 661 TPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASR 720
Query: 277 VIRHMVEKG 285
+ M G
Sbjct: 721 IFSEMRNSG 729
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 42/219 (19%)
Query: 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179
I++ +LGK + +A N+ N ++E GF V +T+L+ + +G F +M
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 180 GCMPDVVCYTVMITSYIAAG-ELEKAQDLFDGMITKGQLPNVFTYNSMI----RG----- 229
GC P ++ Y V++ + G K L + M + G P+ +TYN++I RG
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 230 --------------------------FCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263
+ + + EA ++ EM G +P+ + YN+L+S
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 264 NLRNAGKLAEAHEVIRHMVEKG------KYIHLVSKFKR 296
G L EA E+ M EKG Y L+S F+R
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFER 396
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 172 FFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231
+F + + M D ++I+ G + A ++F+G+ G +V++Y S+I F
Sbjct: 160 WFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFA 219
Query: 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
+G++ EA + K+ME GC P + YN +++ GK+ I +VEK K
Sbjct: 220 NSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF---GKMGTPWNKITSLVEKMK 271
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 144/288 (50%), Gaps = 14/288 (4%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLA----RKVVERFIKSKLFNFRPFKNSYNAILH 53
M+E GF T+ ++ C G LA RK+ ER IK+ + Y+ ++
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ-------YSIVID 253
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
+L + ++ +M +G D++TY+ ++ GK D ++L EM P
Sbjct: 254 SLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP 313
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
D T++ L+ V K K L A L N M G P + + +L+DG + L F
Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF 373
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
D M +KGC PD+V Y+++I SY A ++ LF + +KG +PN TYN+++ GFC +
Sbjct: 374 DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQS 433
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
GK + A + +EM SRG P+ + Y L+ L + G+L +A E+ M
Sbjct: 434 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 3/269 (1%)
Query: 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGY 76
+C G V A +++R ++ + F+P + +Y +L+ L L ++++M +
Sbjct: 185 LCLKGRVSEALVLIDRMVE---YGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNI 241
Query: 77 APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALN 136
++ Y+IV+ + + G D L +EM G D TY+ L+ L K
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 301
Query: 137 LLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYI 196
+L M P V+ F+ L+D + G L K ++EM +G PD + Y +I +
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361
Query: 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL 256
L +A +FD M++KG P++ TY+ +I +C A + D+ + +E+ S+G PN +
Sbjct: 362 KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 421
Query: 257 VYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
YNTLV +GKL A E+ + MV +G
Sbjct: 422 TYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 4/248 (1%)
Query: 40 NFRPFKNSYNAILHALLGIRQYKLIEW--VYQQMSDEGYAPDILTYNIVMCAKYRLGKLD 97
N P +++A++ +++ KL+E +Y +M G APD +TYN ++ + L
Sbjct: 310 NIIPDVVTFSALIDVF--VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 367
Query: 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157
+ +++ D M G PD TY+IL++ K + + L + G P+ + + TL+
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217
G ++G L+A K F EM ++G P VV Y +++ GEL KA ++F+ M
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487
Query: 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEV 277
+ YN +I G C A K D+A ++ + +G P+ + YN ++ L G L+EA +
Sbjct: 488 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547
Query: 278 IRHMVEKG 285
R M E G
Sbjct: 548 FRKMKEDG 555
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 35/243 (14%)
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
PD++T + ++ G++ + L+D M GF PD TY +L+ L K AL+L
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232
Query: 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG----------------- 180
M+E SV+ ++ ++D L + G+ D F+EM KG
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 292
Query: 181 ------------------CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT 222
+PDVV ++ +I ++ G+L +A++L++ MIT+G P+ T
Sbjct: 293 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352
Query: 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282
YNS+I GFC EA M M S+GC P+ + Y+ L+++ A ++ + + R +
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412
Query: 283 EKG 285
KG
Sbjct: 413 SKG 415
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 110/239 (46%)
Query: 43 PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102
P +YN+++ ++ M +G PDI+TY+I++ + + ++D RL
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162
E+ G P+ TYN L+ + K AA L M G PSV+ + L+DGL
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467
Query: 163 AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT 222
G L+ F++M + Y ++I A +++ A LF + KG P+V T
Sbjct: 468 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 527
Query: 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
YN MI G C G EA + ++M+ GC P+ YN L+ L + E+I M
Sbjct: 528 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 586
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 107/211 (50%)
Query: 75 GYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAA 134
GY PD +T++ ++ G++ + L+D M PD T + L++ L + A
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194
Query: 135 LNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS 194
L L++ M E GF P + + +++ L ++GN F +M + VV Y+++I S
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254
Query: 195 YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN 254
G + A LF+ M KG +V TY+S+I G C GK+D+ M++EM R P+
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
Query: 255 FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ ++ L+ GKL EA E+ M+ +G
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 120/261 (45%), Gaps = 3/261 (1%)
Query: 22 EVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDIL 81
+V A + E I+S+ P +N + A+ +QY L+ + M G D+
Sbjct: 50 KVNDAIDLFESMIQSRPL---PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMY 106
Query: 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHM 141
T I++ R KL +L + G+ PD T++ L++ + A+ L++ M
Sbjct: 107 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 166
Query: 142 KEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGEL 201
E+ P ++ +TL++GL G + D M G PD V Y ++ +G
Sbjct: 167 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 226
Query: 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTL 261
A DLF M + +V Y+ +I C G FD+A ++ EME +G + + Y++L
Sbjct: 227 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 286
Query: 262 VSNLRNAGKLAEAHEVIRHMV 282
+ L N GK + +++R M+
Sbjct: 287 IGGLCNDGKWDDGAKMLREMI 307
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%)
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
+++++S +G P+ +TYN ++ + GKL+ L EM G P TY ILL L
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
+ AL + M++ + + ++ G+ A +D F +++KG PDVV
Sbjct: 467 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVV 526
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
Y VMI G L +A LF M G P+ FTYN +IR + +++EM
Sbjct: 527 TYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 586
Query: 247 ESRG 250
+ G
Sbjct: 587 KVCG 590
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ G P + T+ IL+ C GE+ A ++ E+ KS++ YN I+H +
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM---TLGIGIYNIIIHGMCN 502
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ ++ +SD+G PD++TYN+++ + G L + L +M G +PD T
Sbjct: 503 ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFT 562
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161
YNIL+ G ++++ L+ MK GF ++D LS
Sbjct: 563 YNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLS 606
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%)
Query: 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193
A++L M + P+ + F L ++R D F M G D+ T+MI
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMIN 113
Query: 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
Y +L A + G P+ T+++++ GFC+ G+ EA ++ M P
Sbjct: 114 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP 173
Query: 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ + +TL++ L G+++EA +I MVE G
Sbjct: 174 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 205
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 41/210 (19%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY 61
G T+N L+ C G++ A+++ + + P +Y +L L +
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR---GVPPSVVTYGILLDGLCDNGEL 471
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
++++M I YNI++ K+D L + G PD TYN++
Sbjct: 472 NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 531
Query: 122 LHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181
+ L K G+L F +M GC
Sbjct: 532 IGGLCK-----------------------------------KGSLSEADMLFRKMKEDGC 556
Query: 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGM 211
PD Y ++I +++ L + +L + M
Sbjct: 557 TPDDFTYNILIRAHLGGSGLISSVELIEEM 586
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 53/121 (43%)
Query: 172 FFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231
F+ M +P + + + ++ + + GM G +++T MI +C
Sbjct: 57 LFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYC 116
Query: 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLV 291
K A +++ G P+ + ++TLV+ G+++EA ++ MVE + LV
Sbjct: 117 RKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLV 176
Query: 292 S 292
+
Sbjct: 177 T 177
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 151/333 (45%), Gaps = 37/333 (11%)
Query: 4 NGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKL 63
GF + F +I +VGLA + VE F + K F P YN +L LLG + ++
Sbjct: 105 QGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 164
Query: 64 IEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD--------- 114
I VY+ M +G+ P++ TYN+++ A + K+D +LL EM G PD
Sbjct: 165 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVIS 224
Query: 115 ---------------------FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHF 153
YN L++ L K A L+ M E G P+V+ +
Sbjct: 225 SMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISY 284
Query: 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMIT 213
+TL++ L +G ++ F +M +GC P++ + ++ G A DL++ MI
Sbjct: 285 STLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIR 344
Query: 214 K-GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLA 272
G PNV YN++++GFC G +A ++ ME GC+PN Y +L++ G L
Sbjct: 345 GFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLD 404
Query: 273 EAHEVIRHMVEKG------KYIHLVSKFKRYKR 299
A + M+ G Y ++V R+ +
Sbjct: 405 GAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSK 437
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 161/325 (49%), Gaps = 48/325 (14%)
Query: 1 MIENGFPTTARTFNILICTCGEVGL---ARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M G A ++ +I + EVGL R++ ERF P + YNA+++ L
Sbjct: 207 MSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERF--------EPVVSVYNALINGLCK 258
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
YK + ++M ++G +P++++Y+ ++ G+++ L +M + G P+ +T
Sbjct: 259 EHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYT 318
Query: 118 YNILLH------------------VLGKGDKP------------------LAALNLLNHM 141
+ L+ + G G +P + A+++ +HM
Sbjct: 319 LSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHM 378
Query: 142 KEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGEL 201
+E+G P++ + +L++G ++ G+LD Y +++M GC P+VV YT M+ + +
Sbjct: 379 EEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKF 438
Query: 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRG-CNPNFLVYNT 260
++A+ L + M + P+V T+N+ I+G C AG+ D A + ++ME + C PN + YN
Sbjct: 439 KEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNE 498
Query: 261 LVSNLRNAGKLAEAHEVIRHMVEKG 285
L+ L A ++ EA+ + R + +G
Sbjct: 499 LLDGLAKANRIEEAYGLTREIFMRG 523
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 131/278 (47%), Gaps = 7/278 (2%)
Query: 23 VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILT 82
V LA + S LF P ++ ++ L Q ++++ QQM +G+
Sbjct: 56 VPLALHFFKSIANSNLFKHTPL--TFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDL 113
Query: 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMK 142
+ V+ ++G ++ + + G P YN +L L ++ + MK
Sbjct: 114 FISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMK 173
Query: 143 EVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202
GF+P+V + L+ L + +D K EM+NKGC PD V YT +I+S G ++
Sbjct: 174 RDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVK 233
Query: 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262
+ ++L + P V YN++I G C + A +M+EM +G +PN + Y+TL+
Sbjct: 234 EGRELAERF-----EPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLI 288
Query: 263 SNLRNAGKLAEAHEVIRHMVEKGKYIHLVSKFKRYKRC 300
+ L N+G++ A + M+++G + ++ + K C
Sbjct: 289 NVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGC 326
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 1/241 (0%)
Query: 39 FNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQ 98
F +P +YN ++ V+ M + G +P+I TY ++ + G LD
Sbjct: 346 FGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDG 405
Query: 99 FHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158
+ ++M SG P+ Y ++ L + K A +L+ M + PSV F +
Sbjct: 406 AVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIK 465
Query: 159 GLSRAGNLDACKYFFDEMANKG-CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217
GL AG LD + F +M + C P++V Y ++ A +E+A L + +G
Sbjct: 466 GLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVE 525
Query: 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEV 277
+ TYN+++ G C AG A ++ +M G +P+ + N ++ GK A ++
Sbjct: 526 WSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQM 585
Query: 278 I 278
+
Sbjct: 586 L 586
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 5/220 (2%)
Query: 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMG 107
Y ++ AL ++K E + + MS E AP + T+N + G+LD ++ +M
Sbjct: 425 YTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQME 484
Query: 108 RSG-FSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
+ P+ TYN LL L K ++ A L + G + S + TL+ G AG
Sbjct: 485 QQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLP 544
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ---LPNVFTY 223
+M G PD + ++I +Y G+ E+A + D +++ G+ P+V +Y
Sbjct: 545 GIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLD-LVSCGRRKWRPDVISY 603
Query: 224 NSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263
++I G C + ++ +++ M S G P+ ++ L++
Sbjct: 604 TNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLIN 643
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 3/196 (1%)
Query: 40 NFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAP-DILTYNIVMCAKYRLGKLDQ 98
N P ++NA + L + E V++QM + P +I+TYN ++ + ++++
Sbjct: 452 NCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEE 511
Query: 99 FHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158
+ L E+ G TYN LLH P AL L+ M G P + ++
Sbjct: 512 AYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIIL 571
Query: 159 GLSRAGNLDACKYFFDEMA--NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ 216
+ G + D ++ + PDV+ YT +I + E L + MI+ G
Sbjct: 572 AYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGI 631
Query: 217 LPNVFTYNSMIRGFCM 232
+P++ T++ +I F +
Sbjct: 632 VPSIATWSVLINCFIL 647
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 147/276 (53%), Gaps = 6/276 (2%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
T+N ++ C G++ A +V++R ++ + P +Y ++ A +
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCY---PDVITYTILIEATCRDSGVGHAMKLL 262
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
+M D G PD++TYN+++ + G+LD+ + L++M SG P+ T+NI+L +
Sbjct: 263 DEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
+ + A LL M GF PSV+ F L++ L R G L ++M GC P+ + Y
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSY 382
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
++ + ++++A + + M+++G P++ TYN+M+ C GK ++A ++ ++ S
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
+GC+P + YNT++ L AGK +A +++ M K
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 137/277 (49%), Gaps = 9/277 (3%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
T+N++I C GE+ A V++R + P +YN IL +L + K V
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRM------SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
+M PD++TY I++ A R + +LLDEM G +PD TYN+L++ + K
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
+ A+ LN M G P+V+ ++ + G + +M KG P VV +
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
++I G L +A D+ + M G PN +YN ++ GFC K D A ++ M S
Sbjct: 348 NILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
RGC P+ + YNT+++ L GK+ +A E++ + KG
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 142/268 (52%), Gaps = 10/268 (3%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWV- 67
T+ ILI C VG A K+++ + P +YN +++ + ++ +L E +
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEM---RDRGCTPDVVTYNVLVNGI--CKEGRLDEAIK 295
Query: 68 -YQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
M G P+++T+NI++ + G+ +LL +M R GFSP T+NIL++ L
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
+ A+++L M + G P+ L + L+ G + +D + + M ++GC PD+V
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
Y M+T+ G++E A ++ + + +KG P + TYN++I G AGK +A ++ EM
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475
Query: 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
++ P+ + Y++LV L GK+ EA
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEA 503
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 133/275 (48%), Gaps = 6/275 (2%)
Query: 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA 77
C G+ A K++E S P +YN ++ + V +MS +
Sbjct: 148 CRLGKTRKAAKILEILEGSGAV---PDVITYNVMISGYCKAGEINNALSVLDRMS---VS 201
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
PD++TYN ++ + GKL Q +LD M + PD TY IL+ + A+ L
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKL 261
Query: 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA 197
L+ M++ G P V+ + L++G+ + G LD F ++M + GC P+V+ + +++ S +
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321
Query: 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257
G A+ L M+ KG P+V T+N +I C G A ++++M GC PN L
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLS 381
Query: 258 YNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
YN L+ K+ A E + MV +G Y +V+
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVT 416
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 112/217 (51%), Gaps = 3/217 (1%)
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
+ M G PDI+ ++ RLGK + ++L+ + SG PD TYN+++ K
Sbjct: 126 ENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKA 185
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
+ AL++L+ M P V+ + T++ L +G L D M + C PDV+ Y
Sbjct: 186 GEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITY 242
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
T++I + + A L D M +G P+V TYN ++ G C G+ DEA + +M S
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
GC PN + +N ++ ++ + G+ +A +++ M+ KG
Sbjct: 303 SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 137/293 (46%), Gaps = 16/293 (5%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILH---- 53
M +G T NI++ C+ G A K++ ++ F P ++N +++
Sbjct: 300 MPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK---GFSPSVVTFNILINFLCR 356
Query: 54 -ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFS 112
LLG R ++E +M G P+ L+YN ++ + K+D+ L+ M G
Sbjct: 357 KGLLG-RAIDILE----KMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY 411
Query: 113 PDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYF 172
PD TYN +L L K K A+ +LN + G P ++ + T++DGL++AG
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471
Query: 173 FDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCM 232
DEM K PD + Y+ ++ G++++A F G PN T+NS++ G C
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK 531
Query: 233 AGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ + D A + M +RGC PN Y L+ L G EA E++ + KG
Sbjct: 532 SRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 6/173 (3%)
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
D + N L ++ G+ L +M G P ++ TTL+ G R G
Sbjct: 102 DVESNNHLRQMVRTGELE-EGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKIL 160
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
+ + G +PDV+ Y VMI+ Y AGE+ A + D M P+V TYN+++R C +
Sbjct: 161 EILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDS 217
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLV-SNLRNAGKLAEAHEVIRHMVEKG 285
GK +A ++ M R C P+ + Y L+ + R++G + A +++ M ++G
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG-VGHAMKLLDEMRDRG 269
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
Query: 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVF 221
R G L+ F + M G +PD++ T +I + G+ KA + + + G +P+V
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173
Query: 222 TYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
TYN MI G+C AG+ + A +++ M +P+ + YNT++ +L ++GKL +A EV+ M
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230
Query: 282 VEKGKYIHLVS 292
+++ Y +++
Sbjct: 231 LQRDCYPDVIT 241
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 76/255 (29%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ GF + TFNILI C G +G A ++E+ + +P SYN +LH
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQ---HGCQPNSLSYNPLLHGFCK 391
Query: 58 IRQY-KLIEW----------------------------------VYQQMSDEGYAPDILT 82
++ + IE+ + Q+S +G +P ++T
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT 451
Query: 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMK 142
YN V+ + GK + +LLDEM PD TY+ L+ L + K A+ + +
Sbjct: 452 YNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511
Query: 143 EVGFDPSVLHFTTLMDGLSRAGNLD------------ACK-------------------- 170
+G P+ + F ++M GL ++ D CK
Sbjct: 512 RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAK 571
Query: 171 ---YFFDEMANKGCM 182
+E+ NKG M
Sbjct: 572 EALELLNELCNKGLM 586
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 139/288 (48%), Gaps = 3/288 (1%)
Query: 4 NGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY-- 61
+G+P T F LI E L KV+ F K FNF P N IL L+ R Y
Sbjct: 113 SGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQ 172
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
K E +++ G P+ +YN++M A L ++L +M PD +Y IL
Sbjct: 173 KAFE-LFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKIL 231
Query: 122 LHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181
+ + + A+ LL+ M GF P L +TTL++ L R L M KGC
Sbjct: 232 IQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGC 291
Query: 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACT 241
PD+V Y MI + A+ + D M++ G PN +Y ++I G C G FDE
Sbjct: 292 NPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKK 351
Query: 242 MMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIH 289
++EM S+G +P+F V N LV + GK+ EA +V+ +++ G+ +H
Sbjct: 352 YLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLH 399
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 111/231 (48%), Gaps = 6/231 (2%)
Query: 4 NGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
+G R++N+L+ C ++ +A ++ + ++ + P +SY ++ Q
Sbjct: 184 HGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVV---PDVDSYKILIQGFCRKGQ 240
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ M ++G+ PD L+Y ++ + R +L + ++LL M G +PD YN
Sbjct: 241 VNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNT 300
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
++ + D+ + A +L+ M G P+ + + TL+ GL G D K + +EM +KG
Sbjct: 301 MILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKG 360
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231
P ++ + + G++E+A D+ + ++ G+ + T+ +I C
Sbjct: 361 FSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLIC 411
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 127/239 (53%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
SYN ++H + + + K + M +GY PD+++Y+ V+ R G+LD+ +L++ M
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
R G P+ + Y ++ +L + K A + M G P + +TTL+DG + G++
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226
A FF EM ++ PDV+ YT +I+ + G++ +A LF M KG P+ T+ +
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 227 IRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
I G+C AG +A + M GC+PN + Y TL+ L G L A+E++ M + G
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 130/268 (48%), Gaps = 3/268 (1%)
Query: 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA 77
C GE+ K++E + L +P Y +I+ L I + E + +M +G
Sbjct: 292 CRFGELDKVWKLIEVMKRKGL---KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGIL 348
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
PD + Y ++ + G + + EM +PD TY ++ + + A L
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408
Query: 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA 197
+ M G +P + FT L++G +AG++ + M GC P+VV YT +I
Sbjct: 409 FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 468
Query: 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257
G+L+ A +L M G PN+FTYNS++ G C +G +EA ++ E E+ G N + +
Sbjct: 469 EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVT 528
Query: 258 YNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
Y TL+ +G++ +A E+++ M+ KG
Sbjct: 529 YTTLMDAYCKSGEMDKAQEILKEMLGKG 556
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 110/219 (50%)
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
V+ M G +P+++TY ++ + G LD + LL EM + G P+ TYN +++ L
Sbjct: 443 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
K A+ L+ + G + + +TTLMD ++G +D + EM KG P +V
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
+ V++ + G LE + L + M+ KG PN T+NS+++ +C+ A + K+M
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 622
Query: 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
SRG P+ Y LV A + EA + + M KG
Sbjct: 623 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 661
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 137/288 (47%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI G + LI C G++ A K F + + P +Y AI+
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKF---FYEMHSRDITPDVLTYTAIISGFCQ 398
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
I ++ +M +G PD +T+ ++ + G + R+ + M ++G SP+ T
Sbjct: 399 IGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVT 458
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y L+ L K +A LL+ M ++G P++ + ++++GL ++GN++ E
Sbjct: 459 YTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFE 518
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
G D V YT ++ +Y +GE++KAQ++ M+ KG P + T+N ++ GFC+ G +
Sbjct: 519 AAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLE 578
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ ++ M ++G PN +N+LV L A + + M +G
Sbjct: 579 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 626
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 115/294 (39%), Gaps = 49/294 (16%)
Query: 28 KVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87
KV + I S F RP N ++ ++ + L+ + Y+ D G P + +++
Sbjct: 136 KVAQSLISS--FWERPKLNVTDSF------VQFFDLLVYTYK---DWGSDPRV--FDVFF 182
Query: 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG-DKPLAALNLLNHMKEVGF 146
G L + R+ ++M G + N+ L L K K A+ + EVG
Sbjct: 183 QVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGV 242
Query: 147 DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK--- 203
+V + ++ + + G + + M KG PDV+ Y+ ++ Y GEL+K
Sbjct: 243 CWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWK 302
Query: 204 --------------------------------AQDLFDGMITKGQLPNVFTYNSMIRGFC 231
A++ F MI +G LP+ Y ++I GFC
Sbjct: 303 LIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFC 362
Query: 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
G A EM SR P+ L Y ++S G + EA ++ M KG
Sbjct: 363 KRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 13/186 (6%)
Query: 4 NGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAI-----LHALLGI 58
N T T C GE+ A+++++ + L +P ++N + LH +L
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL---QPTIVTFNVLMNGFCLHGMLED 579
Query: 59 RQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTY 118
+ KL+ W M +G AP+ T+N ++ L + +M G PD TY
Sbjct: 580 GE-KLLNW----MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634
Query: 119 NILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMAN 178
L+ K A L MK GF SV ++ L+ G + + FD+M
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 694
Query: 179 KGCMPD 184
+G D
Sbjct: 695 EGLAAD 700
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/146 (19%), Positives = 62/146 (42%), Gaps = 6/146 (4%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ G A TFN L+ C + A + + + P +Y ++
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGV---GPDGKTYENLVKGHCK 643
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
R K +++Q+M +G++ + TY++++ + K + + D+M R G + D
Sbjct: 644 ARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEI 703
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKE 143
++ KG +P ++ ++ + E
Sbjct: 704 FDFFSDTKYKGKRPDTIVDPIDEIIE 729
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 132/282 (46%), Gaps = 1/282 (0%)
Query: 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHAL-LGIRQYKL 63
G+ T F+ LI G GL + + F K + RP +YNA++ A G ++K
Sbjct: 263 GYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQ 322
Query: 64 IEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123
+ + +M G PD +T+N ++ R G + L DEM D +YN LL
Sbjct: 323 VAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLD 382
Query: 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP 183
+ KG + A +L M P+V+ ++T++DG ++AG D F EM G
Sbjct: 383 AICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIAL 442
Query: 184 DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMM 243
D V Y +++ Y G E+A D+ M + G +V TYN+++ G+ GK+DE +
Sbjct: 443 DRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502
Query: 244 KEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
EM+ PN L Y+TL+ G EA E+ R G
Sbjct: 503 TEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 127/269 (47%), Gaps = 14/269 (5%)
Query: 1 MIENGFPTTARTFNILICTCGEVGL---AR----KVVERFIKSKLFNFRPFKNSYNAILH 53
M NG TFN L+ C GL AR ++ R I+ +F SYN +L
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVF-------SYNTLLD 382
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
A+ Q L + QM + P++++Y+ V+ + G+ D+ L EM G +
Sbjct: 383 AICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIAL 442
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
D +YN LL + K + AL++L M VG V+ + L+ G + G D K F
Sbjct: 443 DRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
EM + +P+++ Y+ +I Y G ++A ++F + G +V Y+++I C
Sbjct: 503 TEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKN 562
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLV 262
G A +++ EM G +PN + YN+++
Sbjct: 563 GLVGSAVSLIDEMTKEGISPNVVTYNSII 591
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 95/202 (47%), Gaps = 1/202 (0%)
Query: 92 RLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVL 151
R GK+ R+ + G+ + ++ L+ G+ A+++ N MKE G P+++
Sbjct: 245 RYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV 304
Query: 152 HFTTLMDGLSRAG-NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDG 210
+ ++D + G FFDEM G PD + + ++ G E A++LFD
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364
Query: 211 MITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK 270
M + +VF+YN+++ C G+ D A ++ +M + PN + Y+T++ AG+
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424
Query: 271 LAEAHEVIRHMVEKGKYIHLVS 292
EA + M G + VS
Sbjct: 425 FDEALNLFGEMRYLGIALDRVS 446
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
SYN +L + + + + ++M+ G D++TYN ++ + GK D+ ++ EM
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
R P+ TY+ L+ KG A+ + K G V+ ++ L+D L + G +
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218
+ DEM +G P+VV Y +I ++ + ++++ D +G G LP
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNG----GSLP 613
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 1/173 (0%)
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
++ LG+ K A + G+ +V F+ L+ R+G + F+ M G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 181 CMPDVVCYTVMITSYIAAG-ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239
P++V Y +I + G E ++ FD M G P+ T+NS++ G ++ A
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 358
Query: 240 CTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ EM +R + YNTL+ + G++ A E++ M K ++VS
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVS 411
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M G T+N L+ G+ G +V + F + K + P +Y+ ++
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGL 529
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
YK ++++ G D++ Y+ ++ A + G + L+DEM + G SP+ TYN
Sbjct: 530 YKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNS 589
Query: 121 LLHVLGK 127
++ G+
Sbjct: 590 IIDAFGR 596
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 167 DACKYFFDEMANKGCMPDVVCY------------------TVMITSYIAAGELEKAQDLF 208
D C Y E+ N+ V + + MI++ G++ A+ +F
Sbjct: 197 DDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIF 256
Query: 209 DGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262
+ G V+ ++++I + +G +EA ++ M+ G PN + YN ++
Sbjct: 257 ETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVI 310
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 162/335 (48%), Gaps = 51/335 (15%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALL-GIRQYKLIEWV 67
T++ILI C ++ LA V+ + +K + P + N++L+ G R + V
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMK---LGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174
Query: 68 YQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK 127
QM + GY PD T+N ++ +R + + L+D M G PD TY I+++ L K
Sbjct: 175 -GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCK 233
Query: 128 -GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
GD LA L+LL M++ +P V+ + T++D L N++ F EM NKG P+VV
Sbjct: 234 RGDIDLA-LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 292
Query: 187 CY-----------------------------------TVMITSYIAAGELEKAQDLFDGM 211
Y + +I +++ G+L +A+ L+D M
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 352
Query: 212 ITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKL 271
I + P++FTY+S+I GFCM + DEA M + M S+ C PN + YNTL+ A ++
Sbjct: 353 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 412
Query: 272 AEAHEVIRHMVEKG------KYIHLVSKFKRYKRC 300
E E+ R M ++G Y L+ F + + C
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLIHGFFQAREC 447
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 134/285 (47%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M+E G+ + TFN LI A + V + + +P +Y +++ L
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
L + ++M P ++ YN ++ A ++ L EM G P+ TYN
Sbjct: 237 IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L+ L + A LL+ M E +P+V+ F+ L+D + G L + +DEM +
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
PD+ Y+ +I + L++A+ +F+ MI+K PNV TYN++I+GFC A + DE
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ +EM RG N + Y TL+ A + A V + MV G
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 141/284 (49%), Gaps = 6/284 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ G T+ I++ C G++ LA ++++ + K+ P YN I+ AL
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKI---EPGVVIYNTIIDALCN 268
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ ++ +M ++G P+++TYN ++ G+ RLL +M +P+ T
Sbjct: 269 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 328
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
++ L+ K K + A L + M + DP + +++L++G LD K+ F+ M
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 388
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+K C P+VV Y +I + A +++ +LF M +G + N TY ++I GF A + D
Sbjct: 389 SKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECD 448
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
A + K+M S G P+ + Y+ L+ L N GK+ A V ++
Sbjct: 449 NAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 127/245 (51%), Gaps = 2/245 (0%)
Query: 42 RPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99
RPF + ++ +L A+ + ++ L+ + +QM + G + ++ TY+I++ R +L
Sbjct: 76 RPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLA 135
Query: 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159
+L +M + G+ PD T N LL+ G++ A++L+ M E+G+ P F TL+ G
Sbjct: 136 LAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHG 195
Query: 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219
L R D M KGC PD+V Y +++ G+++ A L M P
Sbjct: 196 LFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPG 255
Query: 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIR 279
V YN++I C ++A + EM+++G PN + YN+L+ L N G+ ++A ++
Sbjct: 256 VVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS 315
Query: 280 HMVEK 284
M+E+
Sbjct: 316 DMIER 320
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 10/290 (3%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M G T+N LI C G A +++ I+ K+ P +++A++ A
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI---NPNVVTFSALIDAF-- 336
Query: 58 IRQYKLIEW--VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF 115
+++ KL+E +Y +M PDI TY+ ++ +LD+ + + M P+
Sbjct: 337 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 396
Query: 116 HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175
TYN L+ K + + L M + G + + +TTL+ G +A D + F +
Sbjct: 397 VTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQ 456
Query: 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235
M + G +PD++ Y++++ G++E A +F+ + P+++TYN MI G C AGK
Sbjct: 457 MVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGK 516
Query: 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
++ + + +G PN + Y T++S G EA + R M E+G
Sbjct: 517 VEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 8/285 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MIE TF+ LI G++ A K+ + IK + P +Y+++++
Sbjct: 317 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI---DPDIFTYSSLINGFCM 373
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + +++ M + P+++TYN ++ + ++D+ L EM + G + T
Sbjct: 374 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y L+H + + A + M G P ++ ++ L+DGL G ++ F+ +
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQ 493
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
PD+ Y +MI AG++E DLF + KG PNV TY +M+ GFC G +
Sbjct: 494 RSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKE 553
Query: 238 EACTMMKEMESRGCNPNFLVYNTLV-SNLRNAGKLAEAHEVIRHM 281
EA + +EM+ G P+ YNTL+ ++LR+ K A A E+IR M
Sbjct: 554 EADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA-ELIREM 597
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 1/223 (0%)
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
P I+ ++ ++ A ++ K D L ++M G S + +TY+IL++ + + AL +
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA 197
L M ++G++P ++ +L++G + +M G PD + +I
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257
+A L D M+ KG P++ TY ++ G C G D A +++K+ME P ++
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258
Query: 258 YNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVSKFKRYKRC 300
YNT++ L N + +A + M KG ++V+ + RC
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT-YNSLIRC 300
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 6/251 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI+ T++ LI C + A+ + E I F P +YN ++
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF---PNVVTYNTLIKGFCK 408
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ ++++MS G + +TY ++ ++ + D + +M G PD T
Sbjct: 409 AKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMT 468
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y+ILL L K AL + +++ +P + + +++G+ +AG ++ F ++
Sbjct: 469 YSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
KG P+VV YT M++ + G E+A LF M +G LP+ TYN++IR G
Sbjct: 529 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKA 588
Query: 238 EACTMMKEMES 248
+ +++EM S
Sbjct: 589 ASAELIREMRS 599
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 79/159 (49%)
Query: 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193
A+NL M + PS++ F+ L+ +++ D ++M N G ++ Y+++I
Sbjct: 65 AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124
Query: 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
+ +L A + M+ G P++ T NS++ GFC + +A +++ +M G P
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184
Query: 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ +NTL+ L + +EA ++ MV KG LV+
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVT 223
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 1/192 (0%)
Query: 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154
KLD L +M +S P ++ LL + K +K ++L M+ +G ++ ++
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
L++ R L +M G PD+V ++ + + A L M+
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
G P+ FT+N++I G + EA ++ M +GC P+ + Y +V+ L G + A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 275 HEVIRHMVEKGK 286
+++ M E+GK
Sbjct: 241 LSLLKKM-EQGK 251
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ +G T++IL+ C G+V A V E +SK+ P +YN ++ +
Sbjct: 457 MVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM---EPDIYTYNIMIEGMCK 513
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + ++ +S +G P+++TY +M R G ++ L EM G PD T
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGT 573
Query: 118 YNILLHV-LGKGDKPLAALNLLNHMKEVGF--DPSVLHFTTLM 157
YN L+ L GDK A+ L+ M+ F D S + T M
Sbjct: 574 YNTLIRAHLRDGDKA-ASAELIREMRSCRFVGDASTIGLVTNM 615
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 55/128 (42%)
Query: 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQM 71
T+NI+I + G + F L +P +Y ++ + + ++++M
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562
Query: 72 SDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKP 131
+EG PD TYN ++ A R G L+ EM F D T ++ ++L G
Sbjct: 563 KEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHDGRLD 622
Query: 132 LAALNLLN 139
+ L +L+
Sbjct: 623 KSFLKMLS 630
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 5/289 (1%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+E G + + N+++ C G V A ++ S F P + ++N +++ L
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM--SNQDGFFPDQYTFNTLVNGLCK 307
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
K + M EGY PD+ TYN V+ +LG++ + +LD+M SP+ T
Sbjct: 308 AGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVT 367
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L+ L K ++ A L + G P V F +L+ GL N F+EM
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+KGC PD Y ++I S + G+L++A ++ M G +V TYN++I GFC A K
Sbjct: 428 SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTR 487
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
EA + EME G + N + YNTL+ L + ++ +A +++ M+ +G+
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ 536
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 143/282 (50%), Gaps = 5/282 (1%)
Query: 7 PTTARTFNILICTCGEVGLARKVVE--RFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
P T T+N LI T + + E R + SK P ++N+++ L R +++
Sbjct: 363 PNTV-TYNTLISTLCKENQVEEATELARVLTSK--GILPDVCTFNSLIQGLCLTRNHRVA 419
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
++++M +G PD TYN+++ + GKLD+ +L +M SG + TYN L+
Sbjct: 420 MELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG 479
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
K +K A + + M+ G + + + TL+DGL ++ ++ D+M +G PD
Sbjct: 480 FCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPD 539
Query: 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244
Y ++T + G+++KA D+ M + G P++ TY ++I G C AG+ + A +++
Sbjct: 540 KYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLR 599
Query: 245 EMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
++ +G N YN ++ L K EA + R M+E+ +
Sbjct: 600 SIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNE 641
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 134/286 (46%), Gaps = 6/286 (2%)
Query: 3 ENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR 59
++GF TFN L+ C G V A ++++ ++ + P +YN+++ L +
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE---GYDPDVYTYNSVISGLCKLG 344
Query: 60 QYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYN 119
+ K V QM +P+ +TYN ++ + ++++ L + G PD T+N
Sbjct: 345 EVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 404
Query: 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179
L+ L A+ L M+ G +P + L+D L G LD +M
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464
Query: 180 GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239
GC V+ Y +I + A + +A+++FD M G N TYN++I G C + + ++A
Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 524
Query: 240 CTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+M +M G P+ YN+L+++ G + +A ++++ M G
Sbjct: 525 AQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 6/256 (2%)
Query: 34 IKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRL 93
+ SK NF P Y IL L + ++ + + M T+ I++ + +
Sbjct: 72 LASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQF 131
Query: 94 GKLDQFHRLLDEM-GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNH--MKEVGFDPSV 150
D+ ++D M G PD H YN +L++L G+ L ++H M G P V
Sbjct: 132 ELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNS--LKLVEISHAKMSVWGIKPDV 189
Query: 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDG 210
F L+ L RA L ++M + G +PD +T ++ YI G+L+ A + +
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249
Query: 211 MITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR-GCNPNFLVYNTLVSNLRNAG 269
M+ G + + N ++ GFC G+ ++A ++EM ++ G P+ +NTLV+ L AG
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309
Query: 270 KLAEAHEVIRHMVEKG 285
+ A E++ M+++G
Sbjct: 310 HVKHAIEIMDVMLQEG 325
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 2/211 (0%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
+YN ++ + + E ++ +M G + + +TYN ++ + +++ +L+D+M
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
G PD +TYN LL +G A +++ M G +P ++ + TL+ GL +AG +
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL-PNVFTYNS 225
+ + KG Y +I + +A +LF M+ + + P+ +Y
Sbjct: 592 EVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRI 651
Query: 226 MIRGFCM-AGKFDEACTMMKEMESRGCNPNF 255
+ RG C G EA + E+ +G P F
Sbjct: 652 VFRGLCNGGGPIREAVDFLVELLEKGFVPEF 682
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 2/217 (0%)
Query: 4 NGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKL 63
+G + T+N LI + R+ E F + ++ +YN ++ L R+ +
Sbjct: 464 SGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523
Query: 64 IEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123
+ QM EG PD TYN ++ R G + + ++ M +G PD TY L+
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583
Query: 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG-CM 182
L K + A LL ++ G + + + ++ GL R F EM +
Sbjct: 584 GLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAP 643
Query: 183 PDVVCYTVMITSYI-AAGELEKAQDLFDGMITKGQLP 218
PD V Y ++ G + +A D ++ KG +P
Sbjct: 644 PDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVP 680
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 146/292 (50%), Gaps = 8/292 (2%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALL-GIRQ 60
G P T NIL+ C C ++ LA + + IK P ++ ++L+ G R
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIK---LGHEPSIVTFGSLLNGFCRGDRV 167
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
Y + +++ QM GY P+++ YN ++ + ++D LL+ M + G PD TYN
Sbjct: 168 YDAL-YMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNS 226
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L+ L + A +++ M + P V F L+D + G + + F++EM +
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRS 286
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
PD+V Y+++I L++A+++F M++KG P+V TY+ +I G+C + K +
Sbjct: 287 LDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ EM RG N + Y L+ AGKL A E+ R MV G + ++++
Sbjct: 347 KLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIIT 398
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 141/280 (50%), Gaps = 6/280 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ G+ +N +I C +V A ++ R K + P +YN+++ L
Sbjct: 177 MVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGI---GPDVVTYNSLISGLCS 233
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ + M+ PD+ T+N ++ A + G++ + +EM R PD T
Sbjct: 234 SGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVT 293
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y++L++ L + A + M G P V+ ++ L++G ++ ++ F EM+
Sbjct: 294 YSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMS 353
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+G + + V YT++I Y AG+L A+++F M+ G PN+ TYN ++ G C GK +
Sbjct: 354 QRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEV 277
+A ++ +M+ G + + + YN ++ + AG++A+A ++
Sbjct: 414 KALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDI 453
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 127/250 (50%)
Query: 43 PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102
P ++ +L A+ +++Y ++ ++++QM G ++ T NI++ R +L
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138
Query: 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162
L +M + G P T+ LL+ +GD+ AL + + M +G+ P+V+ + T++DGL +
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198
Query: 163 AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT 222
+ +D + M G PDVV Y +I+ ++G A + M + P+VFT
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFT 258
Query: 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282
+N++I G+ EA +EM R +P+ + Y+ L+ L +L EA E+ MV
Sbjct: 259 FNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMV 318
Query: 283 EKGKYIHLVS 292
KG + +V+
Sbjct: 319 SKGCFPDVVT 328
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M ++G T+N LI C+ G A ++V K +++ P ++NA++ A +
Sbjct: 212 MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIY---PDVFTFNALIDACVK 268
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ E Y++M PDI+TY++++ +LD+ + M G PD T
Sbjct: 269 EGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVT 328
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y+IL++ K K + L M + G + + +T L+ G RAG L+ + F M
Sbjct: 329 YSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMV 388
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
G P+++ Y V++ G++EKA + M G ++ TYN +IRG C AG+
Sbjct: 389 FCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVA 448
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+A + + +G P+ Y T++ L G EA + R M E G
Sbjct: 449 DAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDG 496
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 6/246 (2%)
Query: 12 TFNILICTC---GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
TFN LI C G V A + E I+ L P +Y+ +++ L + E ++
Sbjct: 258 TFNALIDACVKEGRVSEAEEFYEEMIRRSL---DPDIVTYSLLIYGLCMYSRLDEAEEMF 314
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
M +G PD++TY+I++ + K++ +L EM + G + TY IL+ +
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRA 374
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
K A + M G P+++ + L+ GL G ++ +M G D+V Y
Sbjct: 375 GKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTY 434
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
++I AGE+ A D++ + +G +P+++TY +M+ G G EA + ++M+
Sbjct: 435 NIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKE 494
Query: 249 RGCNPN 254
G PN
Sbjct: 495 DGILPN 500
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 89/196 (45%)
Query: 92 RLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVL 151
R KLD L M + P ++ LL + K K + L M+ +G ++
Sbjct: 58 RFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLC 117
Query: 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGM 211
L++ R L F +M G P +V + ++ + + A +FD M
Sbjct: 118 TCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQM 177
Query: 212 ITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKL 271
+ G PNV YN++I G C + + D A ++ ME G P+ + YN+L+S L ++G+
Sbjct: 178 VGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRW 237
Query: 272 AEAHEVIRHMVEKGKY 287
++A ++ M ++ Y
Sbjct: 238 SDATRMVSCMTKREIY 253
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 48/105 (45%)
Query: 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247
Y M+ + I +L+ + DLF M+ LP++ ++ ++ K+D + ++M+
Sbjct: 49 YREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108
Query: 248 SRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
G N N L++ +L+ A + M++ G +V+
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVT 153
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 137 bits (346), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 3/265 (1%)
Query: 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA 77
C V AR + E+F K +P +YN ++ LL ++ + V+ Q+ G
Sbjct: 760 CKHNNVSGARTLFEKFTKD--LGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCI 817
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
PD+ TYN ++ A + GK+D+ L EM + T+NI++ L K AL+L
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877
Query: 138 L-NHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYI 196
+ M + F P+ + L+DGLS++G L K F+ M + GC P+ Y ++I +
Sbjct: 878 YYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Query: 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL 256
AGE + A LF M+ +G P++ TY+ ++ CM G+ DE KE++ G NP+ +
Sbjct: 938 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVV 997
Query: 257 VYNTLVSNLRNAGKLAEAHEVIRHM 281
YN +++ L + +L EA + M
Sbjct: 998 CYNLIINGLGKSHRLEEALVLFNEM 1022
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 137/292 (46%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M E GF A ++N LI + + +E + + L FRP +Y++++ L R
Sbjct: 179 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRD 238
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ + ++M G P++ T+ I + R GK+++ + +L M G PD TY +
Sbjct: 239 IDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTV 298
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L+ L K A + MK P + + TL+D S +LD+ K F+ EM G
Sbjct: 299 LIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDG 358
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
+PDVV +T+++ + AG +A D D M +G LPN+ TYN++I G + D+A
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDAL 418
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ MES G P Y + +G A E M KG ++V+
Sbjct: 419 ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 470
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 120/251 (47%)
Query: 35 KSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94
K + F F SYN ++H LL R VY++M EG+ P + TY+ +M +
Sbjct: 178 KMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRR 237
Query: 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154
+D LL EM G P+ +T+ I + VLG+ K A +L M + G P V+ +T
Sbjct: 238 DIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYT 297
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
L+D L A LD K F++M PD V Y ++ + +L+ + + M
Sbjct: 298 VLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKD 357
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
G +P+V T+ ++ C AG F EA + M +G PN YNTL+ L +L +A
Sbjct: 358 GHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDA 417
Query: 275 HEVIRHMVEKG 285
E+ +M G
Sbjct: 418 LELFGNMESLG 428
Score = 127 bits (320), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 140/278 (50%), Gaps = 1/278 (0%)
Query: 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
G TA T+ + I G+ G + +E F K K P + NA L++L + +
Sbjct: 428 GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREA 487
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
+ ++ + D G PD +TYN++M ++G++D+ +LL EM +G PD N L++
Sbjct: 488 KQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINT 547
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
L K D+ A + MKE+ P+V+ + TL+ GL + G + F+ M KGC P+
Sbjct: 548 LYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPN 607
Query: 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244
+ + + E+ A + M+ G +P+VFTYN++I G G+ EA
Sbjct: 608 TITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFH 667
Query: 245 EMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282
+M+ + P+F+ TL+ + A + +A+++I + +
Sbjct: 668 QMK-KLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFL 704
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 106/215 (49%)
Query: 71 MSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDK 130
M D+G P++ TYN ++C R+ +LD L M G P +TY + + GK
Sbjct: 389 MRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGD 448
Query: 131 PLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTV 190
++AL MK G P+++ + L++AG K F + + G +PD V Y +
Sbjct: 449 SVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNM 508
Query: 191 MITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRG 250
M+ Y GE+++A L M+ G P+V NS+I A + DEA M M+
Sbjct: 509 MMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK 568
Query: 251 CNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
P + YNTL++ L GK+ EA E+ MV+KG
Sbjct: 569 LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 137/282 (48%), Gaps = 3/282 (1%)
Query: 6 FPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYK-LI 64
P A T+N L+ G+ G ++ E + + ++N ++ L+ +
Sbjct: 817 IPDVA-TYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDAL 875
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
+ Y MSD ++P TY ++ + G+L + +L + M G P+ YNIL++
Sbjct: 876 DLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILING 935
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
GK + AA L M + G P + ++ L+D L G +D ++F E+ G PD
Sbjct: 936 FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD 995
Query: 185 VVCYTVMITSYIAAGELEKAQDLFDGMIT-KGQLPNVFTYNSMIRGFCMAGKFDEACTMM 243
VVCY ++I + LE+A LF+ M T +G P+++TYNS+I +AG +EA +
Sbjct: 996 VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1055
Query: 244 KEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
E++ G PN +N L+ +GK A+ V + MV G
Sbjct: 1056 NEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGG 1097
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 132/315 (41%), Gaps = 37/315 (11%)
Query: 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
G TF I I G G + E + P +Y ++ AL R+
Sbjct: 253 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 312
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGK-LDQFHRLLDEMGRSGFSPDFHTYNILLH 123
+ V+++M + PD +TY I + ++ + LD + EM + G PD T+ IL+
Sbjct: 313 KEVFEKMKTGRHKPDRVTY-ITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVD 371
Query: 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP 183
L K A + L+ M++ G P++ + TL+ GL R LD F M + G P
Sbjct: 372 ALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKP 431
Query: 184 DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV----------------------- 220
Y V I Y +G+ A + F+ M TKG PN+
Sbjct: 432 TAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF 491
Query: 221 ------------FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNA 268
TYN M++ + G+ DEA ++ EM GC P+ +V N+L++ L A
Sbjct: 492 YGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKA 551
Query: 269 GKLAEAHEVIRHMVE 283
++ EA ++ M E
Sbjct: 552 DRVDEAWKMFMRMKE 566
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 1/223 (0%)
Query: 40 NFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99
+F P +Y ++ L + + +++ M D G P+ YNI++ + G+ D
Sbjct: 886 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAA 945
Query: 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159
L M + G PD TY++L+ L + L+ +KE G +P V+ + +++G
Sbjct: 946 CALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIING 1005
Query: 160 LSRAGNLDACKYFFDEM-ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218
L ++ L+ F+EM ++G PD+ Y +I + AG +E+A +++ + G P
Sbjct: 1006 LGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEP 1065
Query: 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTL 261
NVFT+N++IRG+ ++GK + A + + M + G +PN Y L
Sbjct: 1066 NVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M ++G TF IL+ C G G A ++ + P ++YN ++ LL
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGIL---PNLHTYNTLICGLLR 410
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + ++ M G P TY + + + G ++M G +P+
Sbjct: 411 VHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 470
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
N L+ L K + A + +K++G P + + +M S+ G +D EM
Sbjct: 471 CNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
GC PDV+ +I + A +++A +F M P V TYN+++ G GK
Sbjct: 531 ENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQ 590
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
EA + + M +GC PN + +NTL L ++ A +++ M++ G
Sbjct: 591 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMG 638
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 114/272 (41%), Gaps = 35/272 (12%)
Query: 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGR 108
N +L AL + + + +V+ M D TY + + G L Q L +M
Sbjct: 122 NYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMRE 181
Query: 109 SGFSPDFHTYNILLHV-----------------------------------LGKGDKPLA 133
GF + ++YN L+H+ LGK +
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193
+ LL M+ +G P+V FT + L RAG ++ M ++GC PDVV YTV+I
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID 301
Query: 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
+ A +L+ A+++F+ M T P+ TY +++ F D EME G P
Sbjct: 302 ALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVP 361
Query: 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ + + LV L AG EA + + M ++G
Sbjct: 362 DVVTFTILVDALCKAGNFGEAFDTLDVMRDQG 393
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 36/227 (15%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M++ G +NILI G+ G A F
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALF--------------------------- 949
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
++M EG PD+ TY++++ +G++D+ E+ SG +PD YN+
Sbjct: 950 --------KRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNL 1001
Query: 121 LLHVLGKGDKPLAALNLLNHMKEV-GFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179
+++ LGK + AL L N MK G P + + +L+ L AG ++ ++E+
Sbjct: 1002 IINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061
Query: 180 GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226
G P+V + +I Y +G+ E A ++ M+T G PN TY +
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 12/308 (3%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+E+ T+NILI C G + +A + F K + P +YN ++
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTL---FDKMETKGCLPNVVTYNTLIDGYCK 252
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+R+ + + M+ +G P++++YN+V+ R G++ + +L EM R G+S D T
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L+ K AL + M G PSV+ +T+L+ + +AGN++ F D+M
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+G P+ YT ++ + G + +A + M G P+V TYN++I G C+ GK +
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLV 291
+A ++++M+ +G +P+ + Y+T++S + + EA V R MVEKG Y L+
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 292 SKFKRYKR 299
F +R
Sbjct: 493 QGFCEQRR 500
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 1/279 (0%)
Query: 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALL-GIRQYKLIEW 66
+T+ F++++ + + L K + ++ F P SYNA+L A + R E
Sbjct: 132 STSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAEN 191
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
V+++M + +P++ TYNI++ G +D L D+M G P+ TYN L+
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYC 251
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
K K LL M G +P+++ + +++GL R G + + EM +G D V
Sbjct: 252 KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEV 311
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
Y +I Y G +A + M+ G P+V TY S+I C AG + A + +M
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM 371
Query: 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
RG PN Y TLV G + EA+ V+R M + G
Sbjct: 372 RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG 410
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 124/248 (50%)
Query: 38 LFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLD 97
L P SYN +++ L + K + +V +M+ GY+ D +TYN ++ + G
Sbjct: 268 LKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFH 327
Query: 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157
Q + EM R G +P TY L+H + K A+ L+ M+ G P+ +TTL+
Sbjct: 328 QALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV 387
Query: 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217
DG S+ G ++ EM + G P VV Y +I + G++E A + + M KG
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLS 447
Query: 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEV 277
P+V +Y++++ GFC + DEA + +EM +G P+ + Y++L+ + EA ++
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL 507
Query: 278 IRHMVEKG 285
M+ G
Sbjct: 508 YEEMLRVG 515
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 137/284 (48%), Gaps = 12/284 (4%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M G+ T+N LI C G A + ++ L P +Y +++H++
Sbjct: 301 MNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL---TPSVITYTSLIHSMCK 357
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
QM G P+ TY ++ + G +++ +R+L EM +GFSP T
Sbjct: 358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVT 417
Query: 118 YNILLH---VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFD 174
YN L++ V GK + +A +L MKE G P V+ ++T++ G R+ ++D
Sbjct: 418 YNALINGHCVTGKMEDAIA---VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKR 474
Query: 175 EMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234
EM KG PD + Y+ +I + ++A DL++ M+ G P+ FTY ++I +CM G
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEG 534
Query: 235 KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVI 278
++A + EM +G P+ + Y+ L++ L + EA ++
Sbjct: 535 DLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 130/270 (48%), Gaps = 3/270 (1%)
Query: 23 VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILT 82
+ A V + ++S++ P +YN ++ + ++ +M +G P+++T
Sbjct: 186 ISFAENVFKEMLESQV---SPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242
Query: 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMK 142
YN ++ +L K+D +LL M G P+ +YN++++ L + + +L M
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302
Query: 143 EVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202
G+ + + TL+ G + GN EM G P V+ YT +I S AG +
Sbjct: 303 RRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMN 362
Query: 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262
+A + D M +G PN TY +++ GF G +EA +++EM G +P+ + YN L+
Sbjct: 363 RAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI 422
Query: 263 SNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ GK+ +A V+ M EKG +VS
Sbjct: 423 NGHCVTGKMEDAIAVLEDMKEKGLSPDVVS 452
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 19/305 (6%)
Query: 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAIL--HALLGIRQYK 62
G RT+ L+ + G + + F P +YNA++ H + G +
Sbjct: 375 GLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDA 434
Query: 63 LIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL 122
+ V + M ++G +PD+++Y+ V+ R +D+ R+ EM G PD TY+ L+
Sbjct: 435 I--AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 123 HVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM 182
+ + A +L M VG P +T L++ G+L+ +EM KG +
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552
Query: 183 PDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYN---------------SMI 227
PDVV Y+V+I +A+ L + + +P+ TY+ S+I
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLI 612
Query: 228 RGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKY 287
+GFCM G EA + + M + P+ YN ++ AG + +A+ + + MV+ G
Sbjct: 613 KGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFL 672
Query: 288 IHLVS 292
+H V+
Sbjct: 673 LHTVT 677
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 25/302 (8%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M +NGF + T+N LI C G++ A V+E + L P SY+ +L
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL---SPDVVSYSTVLSGF-- 460
Query: 58 IRQYKLIEW--VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF 115
R Y + E V ++M ++G PD +TY+ ++ + + L +EM R G PD
Sbjct: 461 CRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520
Query: 116 HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175
TY L++ AL L N M E G P V+ ++ L++GL++ K +
Sbjct: 521 FTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLK 580
Query: 176 MANKGCMPDVVCYTVMITS---------------YIAAGELEKAQDLFDGMITKGQLPNV 220
+ + +P V Y +I + + G + +A +F+ M+ K P+
Sbjct: 581 LFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDG 640
Query: 221 FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRH 280
YN MI G C AG +A T+ KEM G + + LV L GK+ E + VI H
Sbjct: 641 TAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVH 700
Query: 281 MV 282
++
Sbjct: 701 VL 702
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 36/148 (24%)
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV-------------------- 220
C + +++ SY ++KA + G +P V
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFA 189
Query: 221 ----------------FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSN 264
FTYN +IRGFC AG D A T+ +ME++GC PN + YNTL+
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDG 249
Query: 265 LRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
K+ + +++R M KG +L+S
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLIS 277
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%)
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
+ V++ M + + PD YNI++ R G + + + L EM +SGF T L+
Sbjct: 625 DQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKA 684
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
L K K +++ H+ L++ R GN+D EMA G +P+
Sbjct: 685 LHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 155/320 (48%), Gaps = 43/320 (13%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY 61
G P T++ILI C ++ LA V+ + +K + P + +++L+ ++
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMK---LGYEPNIVTLSSLLNGYCHSKRI 167
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
+ QM GY P+ +T+N ++ + K + L+D M G PD TY ++
Sbjct: 168 SEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVV 227
Query: 122 LHVLGK-GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
++ L K GD L A NLLN M++ +P VL + T++DGL + ++D F EM KG
Sbjct: 228 VNGLCKRGDTDL-AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 286
Query: 181 CMPDVVCYTVMIT-----------------------------------SYIAAGELEKAQ 205
P+VV Y+ +I+ +++ G+L +A+
Sbjct: 287 IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAE 346
Query: 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265
L+D M+ + P++ TY+S+I GFCM + DEA M + M S+ C P+ + YNTL+
Sbjct: 347 KLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGF 406
Query: 266 RNAGKLAEAHEVIRHMVEKG 285
++ E EV R M ++G
Sbjct: 407 CKYKRVEEGMEVFREMSQRG 426
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 6/284 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ G T+ +++ C G+ LA ++ + + KL P YN I+ L
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKL---EPGVLIYNTIIDGLCK 268
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ ++++M +G P+++TY+ ++ G+ RLL +M +PD T
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
++ L+ K K + A L + M + DPS++ +++L++G LD K F+ M
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV 388
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+K C PDVV Y +I + +E+ ++F M +G + N TYN +I+G AG D
Sbjct: 389 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 448
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
A + KEM S G PN + YNTL+ L GKL +A V ++
Sbjct: 449 MAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILICTC---GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M G+ TFN LI + A +++R + +P +Y +++ L
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK---GCQPDLVTYGVVVNGLCK 233
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
L + +M P +L YN ++ + +D L EM G P+ T
Sbjct: 234 RGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVT 293
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y+ L+ L + A LL+ M E +P V F+ L+D + G L + +DEM
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV 353
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+ P +V Y+ +I + L++A+ +F+ M++K P+V TYN++I+GFC + +
Sbjct: 354 KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVE 413
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
E + +EM RG N + YN L+ L AG A E+ + MV G
Sbjct: 414 EGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 8/285 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MIE TF+ LI G++ A K+ + +K + P +Y+++++
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI---DPSIVTYSSLINGFCM 373
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + +++ M + PD++TYN ++ + ++++ + EM + G + T
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YNIL+ L + A + M G P+++ + TL+DGL + G L+ F+ +
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
P + Y +MI AG++E DLF + KG P+V YN+MI GFC G +
Sbjct: 494 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE 553
Query: 238 EACTMMKEMESRGCNPNFLVYNTLV-SNLRNAGKLAEAHEVIRHM 281
EA + KEM+ G PN YNTL+ + LR+ + A A E+I+ M
Sbjct: 554 EADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA-ELIKEM 597
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 130/246 (52%), Gaps = 4/246 (1%)
Query: 42 RPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99
RPF + ++ +L A+ + ++ ++ + +QM + G + TY+I++ R +L
Sbjct: 76 RPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLA 135
Query: 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159
+L +M + G+ P+ T + LL+ + A+ L++ M G+ P+ + F TL+ G
Sbjct: 136 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 195
Query: 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL-P 218
L D M KGC PD+V Y V++ G+ + A +L + M +G+L P
Sbjct: 196 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEP 254
Query: 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVI 278
V YN++I G C D+A + KEME++G PN + Y++L+S L N G+ ++A ++
Sbjct: 255 GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLL 314
Query: 279 RHMVEK 284
M+E+
Sbjct: 315 SDMIER 320
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 135/283 (47%), Gaps = 9/283 (3%)
Query: 7 PTTARTFNILICTC--GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
P +++ C C G A +++ I+ K+ P +++A++ A +++ KL+
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI---NPDVFTFSALIDAF--VKEGKLV 343
Query: 65 EW--VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL 122
E +Y +M P I+TY+ ++ +LD+ ++ + M PD TYN L+
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403
Query: 123 HVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM 182
K + + + M + G + + + L+ GL +AG+ D + F EM + G
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 183 PDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTM 242
P+++ Y ++ G+LEKA +F+ + P ++TYN MI G C AGK ++ +
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 243 MKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ +G P+ + YNT++S G EA + + M E G
Sbjct: 524 FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 566
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 137/280 (48%), Gaps = 13/280 (4%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ + T++ LI C + A+++ E + F P +YN ++ G
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVTYNTLIK---G 405
Query: 58 IRQYKLIEW---VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD 114
+YK +E V+++MS G + +TYNI++ ++ G D + EM G P+
Sbjct: 406 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465
Query: 115 FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFD 174
TYN LL L K K A+ + +++ +P++ + +++G+ +AG ++ F
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 525
Query: 175 EMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234
++ KG PDVV Y MI+ + G E+A LF M G LPN YN++IR G
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 585
Query: 235 KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
+ + ++KEM S G + LV+N+ + G+L ++
Sbjct: 586 DREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKS 624
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 119/251 (47%), Gaps = 8/251 (3%)
Query: 57 GIRQYKLIEWV--YQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD 114
G+ + KL + V + +M P I+ ++ ++ A ++ K D L ++M G +
Sbjct: 56 GLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHN 115
Query: 115 FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFD 174
+TY+IL++ + + AL +L M ++G++P+++ ++L++G + + D
Sbjct: 116 HYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVD 175
Query: 175 EMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234
+M G P+ V + +I + +A L D M+ KG P++ TY ++ G C G
Sbjct: 176 QMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235
Query: 235 KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYI 288
D A ++ +ME P L+YNT++ L + +A + + M KG Y
Sbjct: 236 DTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYS 295
Query: 289 HLVSKFKRYKR 299
L+S Y R
Sbjct: 296 SLISCLCNYGR 306
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%)
Query: 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
T T+NI+I + G + F L +P +YN ++ + + ++
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALF 559
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
++M ++G P+ YN ++ A+ R G + L+ EM GF+ D T ++ ++L G
Sbjct: 560 KEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDG 619
Query: 129 DKPLAALNLLN 139
+ L++L+
Sbjct: 620 RLDKSFLDMLS 630
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 15/293 (5%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLA----RKVVERFIKSKLFNFRPFKNSYNAILH 53
M+E GF T+ ++ C G+ LA RK+ ER IK Y+ I+
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK-------YSIIID 271
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
L ++ +M +G+ DI+TYN ++ G+ D +LL +M + SP
Sbjct: 272 GLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP 331
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
+ T+++L+ K K A LL M + G P+ + + +L+DG + L+
Sbjct: 332 NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMV 391
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
D M +KGC PD++ + ++I Y A ++ +LF M +G + N TYN++++GFC +
Sbjct: 392 DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQS 451
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
GK + A + +EM SR P+ + Y L+ L + G+L +A E+ +EK K
Sbjct: 452 GKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGK-IEKSK 503
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 8/289 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHAL-L 56
M G + T +I+I C C ++ A + + +K + P +N +L+ L L
Sbjct: 114 MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMK---LGYEPDTVIFNTLLNGLCL 170
Query: 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH 116
R + +E V +M + G+ P ++T N ++ GK+ L+D M +GF P+
Sbjct: 171 ECRVSEALELV-DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEV 229
Query: 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM 176
TY +L+V+ K + A+ LL M+E + ++ ++DGL + G+LD F+EM
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289
Query: 177 ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236
KG D++ Y +I + AG + L MI + PNV T++ +I F GK
Sbjct: 290 EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKL 349
Query: 237 DEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
EA ++KEM RG PN + YN+L+ +L EA +++ M+ KG
Sbjct: 350 READQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 141/285 (49%), Gaps = 8/285 (2%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY 61
GF T+N LI C G K++ IK K+ P +++ ++ + + +
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKI---SPNVVTFSVLIDSFVKEGKL 349
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
+ + + ++M G AP+ +TYN ++ + +L++ +++D M G PD T+NIL
Sbjct: 350 READQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNIL 409
Query: 122 LHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181
++ K ++ L L M G + + + TL+ G ++G L+ K F EM ++
Sbjct: 410 INGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469
Query: 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP-NVFTYNSMIRGFCMAGKFDEAC 240
PD+V Y +++ GELEKA ++F G I K ++ ++ Y +I G C A K D+A
Sbjct: 470 RPDIVSYKILLDGLCDNGELEKALEIF-GKIEKSKMELDIGIYMIIIHGMCNASKVDDAW 528
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ + +G + YN ++S L L++A + R M E+G
Sbjct: 529 DLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 128/269 (47%), Gaps = 5/269 (1%)
Query: 19 TCGEVGL-ARKVVERFIKSKLFNFRPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEG 75
+ G VG+ A V+ F + RP +N + A+ +QY+L+ + +QM +G
Sbjct: 61 SSGLVGIKADDAVDLF--RDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKG 118
Query: 76 YAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAAL 135
A I T +I++ R KL + ++ + G+ PD +N LL+ L + AL
Sbjct: 119 IAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEAL 178
Query: 136 NLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSY 195
L++ M E+G P+++ TL++GL G + D M G P+ V Y ++
Sbjct: 179 ELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVM 238
Query: 196 IAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF 255
+G+ A +L M + + Y+ +I G C G D A + EME +G +
Sbjct: 239 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 298
Query: 256 LVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
+ YNTL+ NAG+ + +++R M+++
Sbjct: 299 ITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 116/285 (40%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
MI+ TF++LI + + G R+ + + P +YN+++ +
Sbjct: 324 MIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENR 383
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ + M +G PDI+T+NI++ + ++D L EM G + TYN
Sbjct: 384 LEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNT 443
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L+ + K A L M P ++ + L+DGL G L+ F ++
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
D+ Y ++I A +++ A DLF + KG + YN MI C +A
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKAD 563
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ ++M G P+ L YN L+ A E+I M G
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG 608
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 102/239 (42%), Gaps = 1/239 (0%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
MI G TFNILI + +E F + L +YN ++ +
Sbjct: 394 MISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGK 453
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
++ + ++Q+M PDI++Y I++ G+L++ + ++ +S D Y I
Sbjct: 454 LEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMI 513
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
++H + K A +L + G + ++ L R +L F +M +G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239
PD + Y ++I +++ + A +L + M + G +V T M+ +G+ D++
Sbjct: 574 HAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVK-MVINMLSSGELDKS 631
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
+YN ++ L + ++++M++EG+APD LTYNI++ A L++EM
Sbjct: 545 AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEM 604
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMK 142
SGF D T +++++L G+ + L++L+ +
Sbjct: 605 KSSGFPADVSTVKMVINMLSSGELDKSFLDMLSTTR 640
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 42/182 (23%)
Query: 148 PSVLHFTTLMDGLSRAGN--LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQ 205
P +L TL L N L C+ F +++ + Y ++S + + + A
Sbjct: 19 PRLLETGTLRIALINCPNELLFCCERGFSTFSDRN-----LSYRDKLSSGLVGIKADDAV 73
Query: 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC-------------- 251
DLF MI LP V +N + +++ + K+MES+G
Sbjct: 74 DLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCF 133
Query: 252 ---------------------NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHL 290
P+ +++NTL++ L +++EA E++ MVE G L
Sbjct: 134 CRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTL 193
Query: 291 VS 292
++
Sbjct: 194 IT 195
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 137/274 (50%), Gaps = 8/274 (2%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALL-GIRQYKLIEWV 67
++NI+I C C +A VV + +K F + P + +++++ G R + I+ V
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMK---FGYEPDVVTVSSLINGFCQGNRVFDAIDLV 162
Query: 68 YQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK 127
+M + G+ PD++ YN ++ ++G ++ L D M R G D TYN L+ L
Sbjct: 163 -SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCC 221
Query: 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC 187
+ A L+ M P+V+ FT ++D + G ++EM + PDV
Sbjct: 222 SGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFT 281
Query: 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247
Y +I G +++A+ + D M+TKG LP+V TYN++I GFC + + DE + +EM
Sbjct: 282 YNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMA 341
Query: 248 SRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
RG + + YNT++ AG+ A E+ M
Sbjct: 342 QRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM 375
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 140/286 (48%), Gaps = 37/286 (12%)
Query: 37 KLFNFRPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94
K+ RP + ++ +L + + Y L+ ++ M G D+ +YNIV+ R
Sbjct: 59 KMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCS 118
Query: 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154
+ ++ +M + G+ PD T + L++ +G++ A++L++ M+E+GF P V+ +
Sbjct: 119 RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 178
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGC--------------------------------- 181
T++DG + G ++ FD M G
Sbjct: 179 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR 238
Query: 182 --MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239
+P+V+ +T +I ++ G+ +A L++ M + P+VFTYNS+I G CM G+ DEA
Sbjct: 239 DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEA 298
Query: 240 CTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
M+ M ++GC P+ + YNTL++ + ++ E ++ R M ++G
Sbjct: 299 KQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 344
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 144/305 (47%), Gaps = 9/305 (2%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M E GF +N +I ++GL VE F + + R +YN+++ L +
Sbjct: 165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ + + M P+++T+ V+ + GK + +L +EM R PD TYN
Sbjct: 225 WSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNS 284
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L++ L + A +L+ M G P V+ + TL++G ++ +D F EMA +G
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 344
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
+ D + Y +I Y AG + AQ++F M ++ PN+ TY+ ++ G CM + ++A
Sbjct: 345 LVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKAL 401
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLVSKF 294
+ + M+ + YN ++ + G + +A ++ R + KG Y ++S F
Sbjct: 402 VLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGF 461
Query: 295 KRYKR 299
R ++
Sbjct: 462 CRKRQ 466
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 123/288 (42%), Gaps = 38/288 (13%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M +G A T+N L+ C G A +++ + + + P ++ A++ +
Sbjct: 200 MERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV---MRDIVPNVITFTAVIDVFVK 256
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ +Y++M+ PD+ TYN ++ G++D+ ++LD M G PD T
Sbjct: 257 EGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVT 316
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L++ K + L M + G + + T++ G +AG DA + F M
Sbjct: 317 YNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMD 376
Query: 178 NKG------------CMP--------------------DVVCYTVMITSYIAAGELEKAQ 205
++ CM D+ Y ++I G +E A
Sbjct: 377 SRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 436
Query: 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
DLF + KG P+V +Y +MI GFC ++D++ + ++M+ G P
Sbjct: 437 DLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%)
Query: 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL 256
++ LE+ DLF MI LP++ ++ ++ + +D ++ ME G +
Sbjct: 46 SSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLY 105
Query: 257 VYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
YN +++ L + A V+ M++ G
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMKFG 134
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 49/334 (14%)
Query: 12 TFNILI-CTC--GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALL-GIRQYKLIEWV 67
T+NI+I C C ++ A ++ + +K + P + N++L+ G R + + V
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMK---LGYGPSIVTLNSLLNGFCHGNRISEAVALV 158
Query: 68 YQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK 127
QM + GY PD +T+ ++ ++ K + L++ M G PD TY +++ L K
Sbjct: 159 -DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCK 217
Query: 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC 187
+P ALNLLN M++ + V+ ++T++D L + ++D F EM NKG PDV
Sbjct: 218 RGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFT 277
Query: 188 YTVMIT-----------------------------------SYIAAGELEKAQDLFDGMI 212
Y+ +I+ ++ G+L +A+ LFD MI
Sbjct: 278 YSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI 337
Query: 213 TKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLA 272
+ PN+ TYNS+I GFCM + DEA + M S+ C P+ + YNTL++ A K+
Sbjct: 338 QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVV 397
Query: 273 EAHEVIRHMVEKG------KYIHLVSKFKRYKRC 300
+ E+ R M +G Y L+ F + C
Sbjct: 398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDC 431
Score = 130 bits (328), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 3/265 (1%)
Query: 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGY 76
+C GE LA ++ + K K+ Y+ ++ +L R ++ +M ++G
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKI---EADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI 271
Query: 77 APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALN 136
PD+ TY+ ++ G+ RLL +M +P+ T+N L+ K K + A
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331
Query: 137 LLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYI 196
L + M + DP+++ + +L++G LD + F M +K C+PDVV Y +I +
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFC 391
Query: 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL 256
A ++ +LF M +G + N TY ++I GF A D A + K+M S G +PN +
Sbjct: 392 KAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIM 451
Query: 257 VYNTLVSNLRNAGKLAEAHEVIRHM 281
YNTL+ L GKL +A V ++
Sbjct: 452 TYNTLLDGLCKNGKLEKAMVVFEYL 476
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 138/292 (47%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M+E G+ TF L+ + A + V + + +P +Y A+++ L +
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
L + +M D++ Y+ V+ + + +D L EM G PD TY+
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L+ L + A LL+ M E +P+V+ F +L+D ++ G L + FDEM +
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
P++V Y +I + L++AQ +F M++K LP+V TYN++I GFC A K +
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGM 400
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ ++M RG N + Y TL+ A A V + MV G + ++++
Sbjct: 401 ELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMT 452
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 8/285 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+E TFN LI G++ A K+ + I+ + P +YN++++
Sbjct: 301 MLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI---DPNIVTYNSLINGFCM 357
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + ++ M + PD++TYN ++ + K+ L +M R G + T
Sbjct: 358 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVT 417
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y L+H + A + M G P+++ + TL+DGL + G L+ F+ +
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 477
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
PD+ Y +M AG++E DLF + KG P+V YN+MI GFC G +
Sbjct: 478 KSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE 537
Query: 238 EACTMMKEMESRGCNPNFLVYNTLV-SNLRNAGKLAEAHEVIRHM 281
EA T+ +M+ G P+ YNTL+ ++LR+ K A A E+I+ M
Sbjct: 538 EAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA-ELIKEM 581
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 131/271 (48%), Gaps = 7/271 (2%)
Query: 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEW--VYQQMSDE 74
+C G A +++ ++ K+ P ++N+++ A ++ KLIE ++ +M
Sbjct: 285 LCNYGRWSDASRLLSDMLERKI---NPNVVTFNSLIDAF--AKEGKLIEAEKLFDEMIQR 339
Query: 75 GYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAA 134
P+I+TYN ++ +LD+ ++ M PD TYN L++ K K +
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDG 399
Query: 135 LNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS 194
+ L M G + + +TTL+ G +A + D + F +M + G P+++ Y ++
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459
Query: 195 YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN 254
G+LEKA +F+ + P+++TYN M G C AGK ++ + + +G P+
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519
Query: 255 FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ YNT++S G EA+ + M E G
Sbjct: 520 VIAYNTMISGFCKKGLKEEAYTLFIKMKEDG 550
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 130/312 (41%), Gaps = 79/312 (25%)
Query: 45 KNSYNAILHALLGIRQYKLIEWV--YQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102
K S NA+LH KL E V + +M P I+ ++ ++ A ++ K D
Sbjct: 35 KLSRNALLH-------LKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISF 87
Query: 103 LDEMGRSGFSPDFHTYNIL-------------LHVLGK---------------------- 127
++M G S + +TYNI+ L +LGK
Sbjct: 88 GEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCH 147
Query: 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC 187
G++ A+ L++ M E+G+ P + FTTL+ GL + + M KGC PD+V
Sbjct: 148 GNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT 207
Query: 188 YTVMITSYIAAGE-----------------------------------LEKAQDLFDGMI 212
Y +I GE ++ A +LF M
Sbjct: 208 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMD 267
Query: 213 TKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLA 272
KG P+VFTY+S+I C G++ +A ++ +M R NPN + +N+L+ GKL
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLI 327
Query: 273 EAHEVIRHMVEK 284
EA ++ M+++
Sbjct: 328 EAEKLFDEMIQR 339
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 7/274 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI+ T+N LI C + A+++ + P +YN +++
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL---PDVVTYNTLINGFCK 392
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ +++ MS G + +TY ++ ++ D + +M G P+ T
Sbjct: 393 AKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMT 452
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN LL L K K A+ + ++++ +P + + + +G+ +AG ++ F ++
Sbjct: 453 YNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLS 512
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
KG PDV+ Y MI+ + G E+A LF M G LP+ TYN++IR G
Sbjct: 513 LKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKA 572
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKL 271
+ ++KEM S + Y LV+++ + G+L
Sbjct: 573 ASAELIKEMRSCRFAGDASTYG-LVTDMLHDGRL 605
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 136/277 (49%), Gaps = 1/277 (0%)
Query: 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQ 69
+TFNILI VG A K +E F P +YN ++ + +++
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265
Query: 70 QM-SDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
+ S +PD++TY ++ + GK+ + LLD+M R G P T+N+L+ K
Sbjct: 266 DVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKA 325
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
+ L A + M G P V+ FT+L+DG R G + ++EM +G P+ Y
Sbjct: 326 GEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTY 385
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
+++I + L KA++L + +K +P F YN +I GFC AGK +EA +++EME
Sbjct: 386 SILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEK 445
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ C P+ + + L+ G++ EA + MV G
Sbjct: 446 KKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG 482
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 36/240 (15%)
Query: 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNH 140
+ N ++ +L +++ +L DE R D T+NIL+ L K AL LL
Sbjct: 172 MVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGV 231
Query: 141 MKEVGFDPSVLHFTTLMDGLSRAGNLD-ACKYFFDEMANKGCMPDVVCYTVMITSYIAAG 199
M G +P ++ + TL+ G ++ L+ A + F D + C PDVV YT MI+ Y AG
Sbjct: 232 MSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAG 291
Query: 200 ELEKAQDLFDG-----------------------------------MITKGQLPNVFTYN 224
++ +A L D MI+ G P+V T+
Sbjct: 292 KMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFT 351
Query: 225 SMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
S+I G+C G+ + + +EM +RG PN Y+ L++ L N +L +A E++ + K
Sbjct: 352 SLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK 411
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 117/247 (47%), Gaps = 4/247 (1%)
Query: 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA 77
C G++ A +++ ++ ++ P ++N ++ + E + +M G
Sbjct: 288 CKAGKMREASSLLDDMLRLGIY---PTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCF 344
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
PD++T+ ++ R+G++ Q RL +EM G P+ TY+IL++ L ++ L A L
Sbjct: 345 PDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKAREL 404
Query: 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA 197
L + P + ++DG +AG ++ +EM K C PD + +T++I +
Sbjct: 405 LGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCM 464
Query: 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257
G + +A +F M+ G P+ T +S++ AG EA + ++ +G + N +
Sbjct: 465 KGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA-YHLNQIARKGQSNNVVP 523
Query: 258 YNTLVSN 264
T +N
Sbjct: 524 LETKTAN 530
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 7/257 (2%)
Query: 39 FNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLD- 97
N R +YN + +L + L +++ M +G +P+ ++ + GKL
Sbjct: 97 LNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHF 156
Query: 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157
LL G N LL+ L K D+ A+ L + F L+
Sbjct: 157 ATALLLQSFEVEGCC---MVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILI 213
Query: 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217
GL G + M+ GC PD+V Y +I + + EL KA ++F + G +
Sbjct: 214 RGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD-VKSGSV 272
Query: 218 --PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAH 275
P+V TY SMI G+C AGK EA +++ +M G P + +N LV AG++ A
Sbjct: 273 CSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAE 332
Query: 276 EVIRHMVEKGKYIHLVS 292
E+ M+ G + +V+
Sbjct: 333 EIRGKMISFGCFPDVVT 349
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 147/309 (47%), Gaps = 12/309 (3%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G+ T + L+ C + A +V++ ++ ++P ++ ++H L
Sbjct: 144 MMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE---MGYKPDTFTFTTLIHGLFL 200
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + QM G PD++TY V+ + G +D LL +M + D
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN ++ L K ALNL M G P V +++L+ L G +M
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+ P+VV ++ +I +++ G+L +A+ L+D MI + P++FTY+S+I GFCM + D
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLV 291
EA M + M S+ C PN + Y+TL+ A ++ E E+ R M ++G Y L+
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440
Query: 292 SKFKRYKRC 300
F + + C
Sbjct: 441 HGFFQARDC 449
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 140/284 (49%), Gaps = 6/284 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G T+ ++ C G++ LA ++++ K K+ YN I+ L
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKI---EADVVIYNTIIDGLCK 270
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ ++ +M ++G PD+ TY+ ++ G+ RLL +M +P+ T
Sbjct: 271 YKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 330
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
++ L+ K K + A L + M + DP + +++L++G LD K+ F+ M
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 390
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+K C P+VV Y+ +I + A +E+ +LF M +G + N TY ++I GF A D
Sbjct: 391 SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCD 450
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
A + K+M S G +PN L YN L+ L GKLA+A V ++
Sbjct: 451 NAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 14/299 (4%)
Query: 1 MIENGFPTTARTFNILI-------CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILH 53
M+E G+ TF LI V L ++V+R + L +Y +++
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV-------TYGTVVN 231
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
L L + ++M D++ YN ++ + +D L EM G P
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP 291
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
D TY+ L+ L + A LL+ M E +P+V+ F+ L+D + G L + +
Sbjct: 292 DVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 351
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
DEM + PD+ Y+ +I + L++A+ +F+ MI+K PNV TY+++I+GFC A
Sbjct: 352 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKA 411
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ +E + +EM RG N + Y TL+ A A V + MV G + ++++
Sbjct: 412 KRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 470
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 129/246 (52%), Gaps = 4/246 (1%)
Query: 42 RPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99
RPF + +N +L A+ + +++L+ + +QM G + D+ TY+I + R +L
Sbjct: 78 RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLA 137
Query: 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159
+L +M + G+ PD T + LL+ + A+ L++ M E+G+ P FTTL+ G
Sbjct: 138 LAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHG 197
Query: 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL-P 218
L D+M +GC PD+V Y ++ G+++ A L M KG++
Sbjct: 198 LFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEA 256
Query: 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVI 278
+V YN++I G C D+A + EM+++G P+ Y++L+S L N G+ ++A ++
Sbjct: 257 DVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 316
Query: 279 RHMVEK 284
M+E+
Sbjct: 317 SDMIER 322
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 6/259 (2%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
+Y+ ++ Q L V +M GY PDI+T + ++ ++ L+D+M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
G+ PD T+ L+H L +K A+ L++ M + G P ++ + T+++GL + G++
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226
D +M DVV Y +I ++ A +LF M KG P+VFTY+S+
Sbjct: 240 DLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL 299
Query: 227 IRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG- 285
I C G++ +A ++ +M R NPN + ++ L+ GKL EA ++ M+++
Sbjct: 300 ISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359
Query: 286 -----KYIHLVSKFKRYKR 299
Y L++ F + R
Sbjct: 360 DPDIFTYSSLINGFCMHDR 378
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 140/285 (49%), Gaps = 8/285 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MIE TF+ LI G++ A K+ + IK + P +Y+++++
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI---DPDIFTYSSLINGFCM 375
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + +++ M + P+++TY+ ++ + ++++ L EM + G + T
Sbjct: 376 HDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVT 435
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y L+H + A + M VG P++L + L+DGL + G L F+ +
Sbjct: 436 YTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ 495
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
PD+ Y +MI AG++E +LF + KG PNV YN+MI GFC G +
Sbjct: 496 RSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKE 555
Query: 238 EACTMMKEMESRGCNPNFLVYNTLV-SNLRNAGKLAEAHEVIRHM 281
EA +++K+M+ G PN YNTL+ + LR+ + A A E+I+ M
Sbjct: 556 EADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA-ELIKEM 599
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 133/271 (49%), Gaps = 7/271 (2%)
Query: 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEW--VYQQMSDE 74
+C G A +++ I+ K+ P +++A++ A +++ KL+E +Y +M
Sbjct: 303 LCNYGRWSDASRLLSDMIERKI---NPNVVTFSALIDAF--VKEGKLVEAEKLYDEMIKR 357
Query: 75 GYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAA 134
PDI TY+ ++ +LD+ + + M P+ TY+ L+ K +
Sbjct: 358 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEG 417
Query: 135 LNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS 194
+ L M + G + + +TTL+ G +A + D + F +M + G P+++ Y +++
Sbjct: 418 MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDG 477
Query: 195 YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN 254
G+L KA +F+ + P+++TYN MI G C AGK ++ + + +G +PN
Sbjct: 478 LCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPN 537
Query: 255 FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ YNT++S G EA +++ M E G
Sbjct: 538 VIAYNTMISGFCRKGSKEEADSLLKKMKEDG 568
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 6/228 (2%)
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
P I+ +N ++ A ++ K + L ++M G S D +TY+I ++ + + AL +
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA 197
L M ++G++P ++ ++L++G + + D+M G PD +T +I
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257
+ +A L D M+ +G P++ TY +++ G C G D A +++K+ME + ++
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260
Query: 258 YNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLVSKFKRYKR 299
YNT++ L + +A + M KG Y L+S Y R
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR 308
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 129/277 (46%), Gaps = 7/277 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI+ T++ LI C + A+ + E I F P +Y+ ++
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF---PNVVTYSTLIKGFCK 410
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ + ++++MS G + +TY ++ ++ D + +M G P+ T
Sbjct: 411 AKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 470
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YNILL L K K A+ + +++ +P + + +++G+ +AG ++ F ++
Sbjct: 471 YNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLS 530
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
KG P+V+ Y MI+ + G E+A L M G LPN TYN++IR G +
Sbjct: 531 LKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDRE 590
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
+ ++KEM S G + LV+N+ + G+L ++
Sbjct: 591 ASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKS 626
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 1/192 (0%)
Query: 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154
K+D L +M +S P +N LL + K +K ++L M+ +G + ++
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
++ R L +M G PD+V + ++ Y + + A L D M+
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
G P+ FT+ ++I G + K EA ++ +M RGC P+ + Y T+V+ L G + A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 275 HEVIRHMVEKGK 286
+++ M EKGK
Sbjct: 243 LSLLKKM-EKGK 253
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 76/159 (47%)
Query: 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193
A++L M + PS++ F L+ +++ + ++M G D+ Y++ I
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126
Query: 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
+ +L A + M+ G P++ T +S++ G+C + + +A ++ +M G P
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ + TL+ L K +EA ++ MV++G LV+
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVT 225
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 61/130 (46%)
Query: 156 LMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKG 215
L + LS +D F +M P +V + ++++ + E L + M T G
Sbjct: 54 LRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG 113
Query: 216 QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAH 275
+++TY+ I FC + A ++ +M G P+ + ++L++ ++ ++++A
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAV 173
Query: 276 EVIRHMVEKG 285
++ MVE G
Sbjct: 174 ALVDQMVEMG 183
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%)
Query: 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQM 71
T+NI+I + G E F L P +YN ++ + + + ++M
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564
Query: 72 SDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKP 131
++G P+ TYN ++ A+ R G + L+ EM GF+ D T ++ ++L G
Sbjct: 565 KEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLD 624
Query: 132 LAALNLLN 139
+ L++L+
Sbjct: 625 KSFLDMLS 632
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 164/341 (48%), Gaps = 49/341 (14%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY 61
G T+NILI C ++ LA ++ + +K + P + +++L+ ++
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMK---LGYEPSIVTLSSLLNGYCHGKRI 171
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
+ QM + GY PD +T+ ++ + K + L+D M + G P+ TY ++
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231
Query: 122 LHVLGK-GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
++ L K GD LA NLLN M+ + +V+ ++T++D L + + D F EM NKG
Sbjct: 232 VNGLCKRGDIDLA-FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 290
Query: 181 CMPDVVCYTVMIT-----------------------------------SYIAAGELEKAQ 205
P+V+ Y+ +I+ +++ G+L +A+
Sbjct: 291 VRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAE 350
Query: 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265
L+D MI + P++FTY+S+I GFCM + DEA M + M S+ C PN + YNTL++
Sbjct: 351 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGF 410
Query: 266 RNAGKLAEAHEVIRHMVEKG------KYIHLVSKFKRYKRC 300
A ++ E E+ R M ++G Y L+ F + + C
Sbjct: 411 CKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDC 451
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 140/284 (49%), Gaps = 6/284 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G T+ +++ C G++ LA ++ + +K+ Y+ ++ +L
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI---EANVVIYSTVIDSLCK 272
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
R ++ +M ++G P+++TY+ ++ + RLL +M +P+ T
Sbjct: 273 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVT 332
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
+N L+ K K + A L + M + DP + +++L++G LD K+ F+ M
Sbjct: 333 FNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 392
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+K C P+VV Y +I + A +++ +LF M +G + N TY ++I GF A D
Sbjct: 393 SKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCD 452
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
A + K+M S G +PN + YNTL+ L GKL +A V ++
Sbjct: 453 NAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 14/299 (4%)
Query: 1 MIENGFPTTARTFNILI-------CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILH 53
M+E G+ TF LI V L ++V+R + L +Y +++
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV-------TYGVVVN 233
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
L L + +M +++ Y+ V+ + + D L EM G P
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP 293
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
+ TY+ L+ L ++ A LL+ M E +P+V+ F L+D + G L + +
Sbjct: 294 NVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLY 353
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
DEM + PD+ Y+ +I + L++A+ +F+ MI+K PNV TYN++I GFC A
Sbjct: 354 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKA 413
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ DE + +EM RG N + Y TL+ A A V + MV G + ++++
Sbjct: 414 KRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMT 472
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 124/244 (50%)
Query: 42 RPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHR 101
RP +Y++++ L ++ + M + P+++T+N ++ A + GKL + +
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351
Query: 102 LLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161
L DEM + PD TY+ L++ D+ A ++ M P+V+ + TL++G
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411
Query: 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVF 221
+A +D F EM+ +G + + V YT +I + A + + AQ +F M++ G PN+
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471
Query: 222 TYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
TYN+++ G C GK ++A + + ++ P YN ++ + AGK+ + ++ +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531
Query: 282 VEKG 285
KG
Sbjct: 532 SLKG 535
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 127/245 (51%), Gaps = 2/245 (0%)
Query: 42 RPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99
RP + +N +L A+ ++++ L+ + ++M G + ++ TYNI++ R ++
Sbjct: 80 RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 139
Query: 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159
LL +M + G+ P T + LL+ G + A+ L++ M E+G+ P + FTTL+ G
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199
Query: 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219
L D M +GC P++V Y V++ G+++ A +L + M N
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAN 259
Query: 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIR 279
V Y+++I C D+A + EME++G PN + Y++L+S L N + ++A ++
Sbjct: 260 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLS 319
Query: 280 HMVEK 284
M+E+
Sbjct: 320 DMIER 324
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 135/283 (47%), Gaps = 9/283 (3%)
Query: 7 PTTARTFNILICTCG--EVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
P +++ C C A +++ I+ K+ P ++NA++ A +++ KL+
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIERKI---NPNVVTFNALIDAF--VKEGKLV 347
Query: 65 EW--VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL 122
E +Y +M PDI TY+ ++ +LD+ + + M P+ TYN L+
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 407
Query: 123 HVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM 182
+ K + + L M + G + + +TTL+ G +A + D + F +M + G
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467
Query: 183 PDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTM 242
P+++ Y ++ G+LEKA +F+ + P ++TYN MI G C AGK ++ +
Sbjct: 468 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 527
Query: 243 MKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ +G P+ ++YNT++S G EA + R M E G
Sbjct: 528 FCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 6/228 (2%)
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
P I +N ++ A ++ K D L ++M R G S + +TYNIL++ + + AL L
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142
Query: 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA 197
L M ++G++PS++ ++L++G + D+M G PD + +T +I
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257
+ +A L D M+ +G PN+ TY ++ G C G D A ++ +ME+ N ++
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262
Query: 258 YNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLVSKFKRYKR 299
Y+T++ +L +A + M KG Y L+S Y+R
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYER 310
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 6/257 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MIE TFN LI G++ A K+ + IK + P +Y+++++
Sbjct: 321 MIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI---DPDIFTYSSLINGFCM 377
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + +++ M + P+++TYN ++ + ++D+ L EM + G + T
Sbjct: 378 HDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVT 437
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y L+H + A + M G P+++ + TL+DGL + G L+ F+ +
Sbjct: 438 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 497
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
P + Y +MI AG++E DLF + KG P+V YN+MI GFC G +
Sbjct: 498 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKE 557
Query: 238 EACTMMKEMESRGCNPN 254
EA + ++M G P+
Sbjct: 558 EADALFRKMREDGPLPD 574
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 54/105 (51%)
Query: 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247
Y ++ + + + +L+ A LF GM+ LP++F +N ++ KFD ++ ++M+
Sbjct: 53 YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112
Query: 248 SRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
G + N YN L++ +++ A ++ M++ G +V+
Sbjct: 113 RLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVT 157
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 55/120 (45%)
Query: 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNS 225
LD F M +P + + ++++ + + L + M G N++TYN
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNI 125
Query: 226 MIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+I FC + A ++ +M G P+ + ++L++ + ++++A ++ MVE G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ +G T+N L+ C G++ A V E +SK+ P +YN ++ +
Sbjct: 461 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM---EPTIYTYNIMIEGMCK 517
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + ++ +S +G PD++ YN ++ R G ++ L +M G PD T
Sbjct: 518 AGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 167/368 (45%), Gaps = 76/368 (20%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+E +P+ + FN L+ CT G+ A K++++ +K P YN ++ ++ G
Sbjct: 364 MMEGCYPS-PKIFNSLVHAYCTSGDHSYAYKLLKKMVKC---GHMPGYVVYNILIGSICG 419
Query: 58 IRQ------YKLIEWVYQQMSDEGYA---PDILTYNIVMCAKYRLGKLDQFHRLLDEMGR 108
+ L E Y +M G ++ ++ +C+ GK ++ ++ EM
Sbjct: 420 DKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSA---GKYEKAFSVIREMIG 476
Query: 109 SGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDA 168
GF PD TY+ +L+ L K A L MK G V +T ++D +AG ++
Sbjct: 477 QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQ 536
Query: 169 CKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIR 228
+ +F+EM GC P+VV YT +I +Y+ A ++ A +LF+ M+++G LPN+ TY+++I
Sbjct: 537 ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596
Query: 229 GFCMAGKFDEACTMMKEM------------------------------------------ 246
G C AG+ ++AC + + M
Sbjct: 597 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE 656
Query: 247 ESR---------GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLV 291
E+R GC PN +VY+ L+ L GKL EA EV M E G Y L+
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716
Query: 292 SKFKRYKR 299
++ + KR
Sbjct: 717 DRYFKVKR 724
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 133/301 (44%), Gaps = 16/301 (5%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M G T+ I++ + + GL + + F + + P +Y A++HA L ++
Sbjct: 509 MKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKK 568
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH---- 116
+++ M EG P+I+TY+ ++ + G++++ ++ + M S PD
Sbjct: 569 VSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFK 628
Query: 117 ------------TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164
TY LL K + A LL+ M G +P+ + + L+DGL + G
Sbjct: 629 QYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVG 688
Query: 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYN 224
LD + EM+ G + Y+ +I Y + A + M+ PNV Y
Sbjct: 689 KLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 748
Query: 225 SMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
MI G C GK DEA +M+ ME +GC PN + Y ++ GK+ E++ M K
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808
Query: 285 G 285
G
Sbjct: 809 G 809
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 121/263 (46%), Gaps = 16/263 (6%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLF-------------NFRPF 44
M+ G T++ LI C G+V A ++ ER SK + RP
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638
Query: 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLD 104
+Y A+L + + + MS EG P+ + Y+ ++ ++GKLD+ +
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 698
Query: 105 EMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164
EM GF +TY+ L+ K + A +L+ M E P+V+ +T ++DGL + G
Sbjct: 699 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758
Query: 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYN 224
D M KGC P+VV YT MI + G++E +L + M +KG PN TY
Sbjct: 759 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818
Query: 225 SMIRGFCMAGKFDEACTMMKEME 247
+I C G D A +++EM+
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMK 841
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 13/290 (4%)
Query: 1 MIENGFPTTARTFNILICTCGEV---GLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M E+GFP T T++ LI +V LA KV+ + +++ + P Y ++ L
Sbjct: 700 MSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN---SCAPNVVIYTEMIDGLCK 756
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + + Q M ++G P+++TY ++ +GK++ LL+ MG G +P++ T
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y +L+ K A NLL MK+ + + +++G ++ DE+
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK--EFIESLGLLDEIG 874
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMIT--KGQLPNVFTYNSMIRGFCMAGK 235
P + Y ++I + I A LE A L + + T + TYNS+I C+A K
Sbjct: 875 QDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANK 934
Query: 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA---HEVIRHMV 282
+ A + EM +G P + +L+ L K++EA + I HMV
Sbjct: 935 VETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMV 984
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 124/283 (43%), Gaps = 17/283 (6%)
Query: 13 FNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQ 69
N+L+ C G +A +E + K F FRP +++YN ++ A L + +++
Sbjct: 203 LNVLVRKHCRNGSFSIA---LEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHR 259
Query: 70 QMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129
+MS D T + C Y L K+ ++ L + F PD Y L+ L +
Sbjct: 260 EMSLANLRMDGFT---LRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEAS 316
Query: 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYT 189
A++ LN M+ P+V+ ++TL+ G L CK + M +GC P +
Sbjct: 317 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 376
Query: 190 VMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMM------ 243
++ +Y +G+ A L M+ G +P YN +I C K C ++
Sbjct: 377 SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSIC-GDKDSLNCDLLDLAEKA 435
Query: 244 -KEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
EM + G N + ++ L +AGK +A VIR M+ +G
Sbjct: 436 YSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQG 478
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 9/297 (3%)
Query: 3 ENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYK 62
EN P T + LI E L + ++ + + + P +Y+ +L L +Q
Sbjct: 296 ENFVPDTV-FYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLG 354
Query: 63 LIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL 122
+ V M EG P +N ++ A G ++LL +M + G P + YNIL+
Sbjct: 355 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414
Query: 123 HVLGKGDKPLAALNLLN-------HMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175
+ GDK +LL+ M G + ++ ++ L AG + E
Sbjct: 415 GSIC-GDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIRE 473
Query: 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235
M +G +PD Y+ ++ A ++E A LF+ M G + +V+TY M+ FC AG
Sbjct: 474 MIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 533
Query: 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
++A EM GC PN + Y L+ A K++ A+E+ M+ +G ++V+
Sbjct: 534 IEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVT 590
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 42/305 (13%)
Query: 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA 77
C V ARK+++ + P + Y+A++ L + + + V +MS+ G+
Sbjct: 650 CKSHRVEEARKLLDAM---SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFP 706
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
+ TY+ ++ +++ + D ++L +M + +P+ Y ++ L K K A L
Sbjct: 707 ATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 766
Query: 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA 197
+ M+E G P+V+ +T ++DG G ++ C + M +KG P+ V Y V+I
Sbjct: 767 MQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCK 826
Query: 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257
G L+ A +L + M + Y +I GF +F E+ ++ E+ P V
Sbjct: 827 NGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSV 884
Query: 258 Y-------------------------------------NTLVSNLRNAGKLAEAHEVIRH 280
Y N+L+ +L A K+ A ++
Sbjct: 885 YRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSE 944
Query: 281 MVEKG 285
M +KG
Sbjct: 945 MTKKG 949
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 3/154 (1%)
Query: 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193
AL L +K+ F PS + L+ +A LD+ EM+ D
Sbjct: 219 ALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAY 278
Query: 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
S G+ +A L + T+ +P+ Y +I G C A F+EA + M + C P
Sbjct: 279 SLCKVGKWREALTLVE---TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335
Query: 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKY 287
N + Y+TL+ N +L V+ M+ +G Y
Sbjct: 336 NVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY 369
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 145/276 (52%), Gaps = 6/276 (2%)
Query: 13 FNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQ 69
+N LI C + A +V++R ++SK +F P +YN ++ +L + L V
Sbjct: 161 YNALINGFCKMNRIDDATRVLDR-MRSK--DFSPDTVTYNIMIGSLCSRGKLDLALKVLN 217
Query: 70 QMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129
Q+ + P ++TY I++ A G +D+ +L+DEM G PD TYN ++ + K
Sbjct: 218 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277
Query: 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYT 189
A ++ +++ G +P V+ + L+ L G + + +M ++ C P+VV Y+
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYS 337
Query: 190 VMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249
++IT+ G++E+A +L M KG P+ ++Y+ +I FC G+ D A ++ M S
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397
Query: 250 GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
GC P+ + YNT+++ L GK +A E+ + E G
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 6/228 (2%)
Query: 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137
PD+ YN ++ ++ ++D R+LD M FSPD TYNI++ L K AL +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA 197
LN + P+V+ +T L++ G +D DEM ++G PD+ Y +I
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275
Query: 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257
G +++A ++ + KG P+V +YN ++R GK++E +M +M S C+PN +
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335
Query: 258 YNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLVSKFKRYKR 299
Y+ L++ L GK+ EA +++ M EKG Y L++ F R R
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 141/292 (48%), Gaps = 14/292 (4%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALL- 56
M F T+NI+I C+ G++ LA KV+ + + N +P +Y ++ A +
Sbjct: 184 MRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSD---NCQPTVITYTILIEATML 240
Query: 57 --GIRQ-YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
G+ + KL++ +M G PD+ TYN ++ + G +D+ ++ + G P
Sbjct: 241 EGGVDEALKLMD----EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEP 296
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
D +YNILL L K L+ M DP+V+ ++ L+ L R G ++
Sbjct: 297 DVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLL 356
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
M KG PD Y +I ++ G L+ A + + MI+ G LP++ YN+++ C
Sbjct: 357 KLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKN 416
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
GK D+A + ++ GC+PN YNT+ S L ++G A +I M+ G
Sbjct: 417 GKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNG 468
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 138/285 (48%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M+ G T+N +I + G+ + E +L P SYN +L ALL +
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
++ E + +M E P+++TY+I++ R GK+++ LL M G +PD ++Y+
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L+ + + A+ L M G P ++++ T++ L + G D F ++ G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
C P+ Y M ++ ++G+ +A + M++ G P+ TYNSMI C G DEA
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAF 493
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
++ +M S +P+ + YN ++ A ++ +A V+ MV G
Sbjct: 494 ELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 34/224 (15%)
Query: 92 RLGKLDQFHRLLDEMGRSGFSPD----------FHT------------------------ 117
R G + LL+ M R G++PD F T
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFA 160
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L++ K ++ A +L+ M+ F P + + ++ L G LD +++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+ C P V+ YT++I + + G +++A L D M+++G P++FTYN++IRG C G D
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
A M++ +E +GC P+ + YN L+ L N GK E +++ M
Sbjct: 281 RAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 6/238 (2%)
Query: 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKL---IEWVY 68
T++ILI T G + + K P SY+ ++ A R+ +L IE++
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF--CREGRLDVAIEFLE 392
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
+SD G PDI+ YN V+ + GK DQ + ++G G SP+ +YN + L
Sbjct: 393 TMISD-GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSS 451
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
+ AL+++ M G DP + + +++ L R G +D +M + P VV Y
Sbjct: 452 GDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTY 511
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
+++ + A +E A ++ + M+ G PN TY +I G AG EA + ++
Sbjct: 512 NIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Query: 132 LAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVM 191
+ +L+LL M G++P V+ T L+ G N+ E+ K PDV Y +
Sbjct: 106 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNAL 164
Query: 192 ITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC 251
I + ++ A + D M +K P+ TYN MI C GK D A ++ ++ S C
Sbjct: 165 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224
Query: 252 NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
P + Y L+ G + EA +++ M+ +G
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRG 258
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 8/216 (3%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M E G A +++ LI C G + +A + +E I P +YN +L L
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCL---PDIVNYNTVLATLCK 415
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG-KLDQFHRLLDEMGRSGFSPDFH 116
+ ++ ++ + G +P+ +YN + A + G K+ H +L EM +G PD
Sbjct: 416 NGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMIL-EMMSNGIDPDEI 474
Query: 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM 176
TYN ++ L + A LL M+ F PSV+ + ++ G +A ++ + M
Sbjct: 475 TYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESM 534
Query: 177 ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMI 212
GC P+ YTV+I AG +A +L + ++
Sbjct: 535 VGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVF 221
R+GN + + M KG PDV+ T +I + + KA + + + GQ P+VF
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQ-PDVF 159
Query: 222 TYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
YN++I GFC + D+A ++ M S+ +P+ + YN ++ +L + GKL A +V+ +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 282 V 282
+
Sbjct: 220 L 220
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 129/276 (46%), Gaps = 6/276 (2%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
+F ILI C C + A V+ + +K + P ++ ++LH + + +
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMK---LGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
M GY P+++ YN ++ + G+L+ LL+EM + G D TYN LL L
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
+ A +L M + +P V+ FT L+D + GNLD + + EM P+ V Y
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
+I G L A+ FD M +KG PNV TYN++I GFC DE + + M
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
G N + YNTL+ GKL A ++ MV +
Sbjct: 345 EGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSR 380
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 120/242 (49%), Gaps = 6/242 (2%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM---CAKYRLGKLDQFHRLL 103
S+ ++H + V +M GY P I+T+ ++ C R+G D F L+
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIG--DAFS-LV 164
Query: 104 DEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163
M +SG+ P+ YN L+ L K + AL LLN M++ G V+ + TL+ GL +
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224
Query: 164 GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTY 223
G +M + PDVV +T +I ++ G L++AQ+L+ MI PN TY
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284
Query: 224 NSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283
NS+I G CM G+ +A M S+GC PN + YNTL+S + E ++ + M
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344
Query: 284 KG 285
+G
Sbjct: 345 EG 346
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 6/295 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G+ + TF L+ C +G A +V +KS + P YN ++ L
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS---GYEPNVVVYNTLIDGLCK 188
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + + +M +G D++TYN ++ G+ R+L +M + +PD T
Sbjct: 189 NGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVT 248
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
+ L+ V K A L M + DP+ + + ++++GL G L K FD MA
Sbjct: 249 FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMA 308
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+KGC P+VV Y +I+ + +++ LF M +G ++FTYN++I G+C GK
Sbjct: 309 SKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLR 368
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
A + M SR P+ + + L+ L G++ A M E KYI +V+
Sbjct: 369 VALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVA 423
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 127/250 (50%)
Query: 43 PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102
P + +L A +R+Y+ + + Q+M G + D+ ++ I++ R +L +
Sbjct: 69 PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSV 128
Query: 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162
L +M + G+ P T+ LLH ++ A +L+ M + G++P+V+ + TL+DGL +
Sbjct: 129 LGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCK 188
Query: 163 AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT 222
G L+ +EM KG DVV Y ++T +G A + M+ + P+V T
Sbjct: 189 NGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVT 248
Query: 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282
+ ++I F G DEA + KEM +PN + YN++++ L G+L +A + M
Sbjct: 249 FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMA 308
Query: 283 EKGKYIHLVS 292
KG + ++V+
Sbjct: 309 SKGCFPNVVT 318
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 3/230 (1%)
Query: 21 GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI 80
G + A+++ + I+S + P +YN+I++ L + + + M+ +G P++
Sbjct: 260 GNLDEAQELYKEMIQSSV---DPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNV 316
Query: 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNH 140
+TYN ++ + +D+ +L M GF+ D TYN L+H + K AL++
Sbjct: 317 VTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCW 376
Query: 141 MKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE 200
M P ++ L+ GL G +++ FD+M +V Y +MI A +
Sbjct: 377 MVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436
Query: 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRG 250
+EKA +LF + +G P+ TY MI G C G EA +++ M+ G
Sbjct: 437 VEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 7/222 (3%)
Query: 67 VYQQMSDEGYAPDILTYNI---VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123
++ M + G D+ ++N V+C R+ K + R L R FS D TYN++L+
Sbjct: 148 LFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL----RGRFSVDTVTYNVILN 203
Query: 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP 183
+ AL +L M E G +P++ + T++ G RAG + FF EM + C
Sbjct: 204 GWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEI 263
Query: 184 DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMM 243
DVV YT ++ + AGE+++A+++FD MI +G LP+V TYN+MI+ C + A M
Sbjct: 264 DVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMF 323
Query: 244 KEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+EM RG PN YN L+ L +AG+ + E+++ M +G
Sbjct: 324 EEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEG 365
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 1/254 (0%)
Query: 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
+ +TF I+ G K V+ F+ S+N IL L ++ + ++
Sbjct: 125 SPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF 184
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
+ + ++ D +TYN+++ + + + +L EM G +P+ TYN +L +
Sbjct: 185 RALRGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRA 243
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
+ A MK+ + V+ +TT++ G AG + + FDEM +G +P V Y
Sbjct: 244 GQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATY 303
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
MI +E A +F+ M+ +G PNV TYN +IRG AG+F +M+ ME+
Sbjct: 304 NAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMEN 363
Query: 249 RGCNPNFLVYNTLV 262
GC PNF YN ++
Sbjct: 364 EGCEPNFQTYNMMI 377
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 3/242 (1%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
+YN IL+ I++ V ++M + G P++ TYN ++ +R G++ EM
Sbjct: 197 TYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM 256
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
+ D TY ++H G + A N+ + M G PSV + ++ L + N+
Sbjct: 257 KKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNV 316
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226
+ F+EM +G P+V Y V+I AGE + ++L M +G PN TYN M
Sbjct: 317 ENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMM 376
Query: 227 IRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL---RNAGKLAEAHEVIRHMVE 283
IR + + ++A + ++M S C PN YN L+S + + + + A +++ MVE
Sbjct: 377 IRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVE 436
Query: 284 KG 285
+G
Sbjct: 437 RG 438
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 1/210 (0%)
Query: 76 YAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAAL 135
Y D ++++ + RL L+ M P T+ I+ KP A+
Sbjct: 87 YVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAV 146
Query: 136 NLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSY 195
L +M E G + F T++D L ++ ++ F + + + D V Y V++ +
Sbjct: 147 KLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSV-DTVTYNVILNGW 205
Query: 196 IAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF 255
KA ++ M+ +G PN+ TYN+M++GF AG+ A EM+ R C +
Sbjct: 206 CLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDV 265
Query: 256 LVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ Y T+V AG++ A V M+ +G
Sbjct: 266 VTYTTVVHGFGVAGEIKRARNVFDEMIREG 295
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 2/195 (1%)
Query: 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157
QF LD R + D ++++ + + + +L++ M+ + PS F +
Sbjct: 75 QFFHFLDNHHRE-YVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVA 133
Query: 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217
+ + AG D F M GC D+ + ++ + +EKA +LF + + +
Sbjct: 134 ERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSV 193
Query: 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEV 277
V TYN ++ G+C+ + +A ++KEM RG NPN YNT++ AG++ A E
Sbjct: 194 DTV-TYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEF 252
Query: 278 IRHMVEKGKYIHLVS 292
M ++ I +V+
Sbjct: 253 FLEMKKRDCEIDVVT 267
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI G + T+N +I C V A + E ++ + P +YN ++ L
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR---GYEPNVTTYNVLIRGLFH 347
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ E + Q+M +EG P+ TYN+++ ++++ L ++MG P+ T
Sbjct: 348 AGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDT 407
Query: 118 YNILLH---VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165
YNIL+ V + + + A LL M E GF P F +++GL GN
Sbjct: 408 YNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGN 458
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 145/295 (49%), Gaps = 6/295 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G+ T L+ C V A +V++ ++ ++P +YNAI+ +L
Sbjct: 146 MLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE---IGYKPDIVAYNAIIDSLCK 202
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ ++++ +G P+++TY ++ + RLL +M + +P+ T
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y+ LL K K L A L M + DP ++ +++L++GL +D FD M
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+KGC+ DVV Y +I + A +E LF M +G + N TYN++I+GF AG D
Sbjct: 323 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 382
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+A +M+ G +P+ YN L+ L + G+L +A + M ++ + +V+
Sbjct: 383 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVT 437
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 137/280 (48%), Gaps = 1/280 (0%)
Query: 6 FPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIE 65
FP+ FN L+ ++ V+ K ++ R ++N +++ Q L
Sbjct: 82 FPSIV-DFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLAL 140
Query: 66 WVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL 125
+ +M GY PD +T ++ R ++ L+D+M G+ PD YN ++ L
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200
Query: 126 GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV 185
K + A + ++ G P+V+ +T L++GL + +M K P+V
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 260
Query: 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245
+ Y+ ++ +++ G++ +A++LF+ M+ P++ TY+S+I G C+ + DEA M
Sbjct: 261 ITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDL 320
Query: 246 MESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
M S+GC + + YNTL++ A ++ + ++ R M ++G
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 141/285 (49%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M+E G+ +N +I + + + F + + RP +Y A+++ L +
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ + M + P+++TY+ ++ A + GK+ + L +EM R PD TY+
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L++ L D+ A + + M G V+ + TL++G +A ++ F EM+ +G
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
+ + V Y +I + AG+++KAQ+ F M G P+++TYN ++ G C G+ ++A
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL 420
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ ++M+ R + + + Y T++ + GK+ EA + + KG
Sbjct: 421 VIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 136/271 (50%), Gaps = 7/271 (2%)
Query: 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEW--VYQQMSDE 74
+C A +++ IK K+ P +Y+A+L A ++ K++E ++++M
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKI---TPNVITYSALLDAF--VKNGKVLEAKELFEEMVRM 289
Query: 75 GYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAA 134
PDI+TY+ ++ ++D+ +++ D M G D +YN L++ K +
Sbjct: 290 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDG 349
Query: 135 LNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS 194
+ L M + G + + + TL+ G +AG++D + FF +M G PD+ Y +++
Sbjct: 350 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 409
Query: 195 YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN 254
GELEKA +F+ M + ++ TY ++IRG C GK +EA ++ + +G P+
Sbjct: 410 LCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 469
Query: 255 FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ Y T++S L G L E + M ++G
Sbjct: 470 IVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 140/272 (51%), Gaps = 8/272 (2%)
Query: 36 SKLFNFRPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRL 93
S + RPF + +N +L A++ +++Y ++ + ++M G D+ T+NIV+
Sbjct: 74 SDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCC 133
Query: 94 GKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHF 153
++ +L +M + G+ PD T L++ + ++ A++L++ M E+G+ P ++ +
Sbjct: 134 FQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAY 193
Query: 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMIT 213
++D L + ++ FF E+ KG P+VV YT ++ + A L MI
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253
Query: 214 KGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAE 273
K PNV TY++++ F GK EA + +EM +P+ + Y++L++ L ++ E
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDE 313
Query: 274 AHEVIRHMVEKG------KYIHLVSKFKRYKR 299
A+++ MV KG Y L++ F + KR
Sbjct: 314 ANQMFDLMVSKGCLADVVSYNTLINGFCKAKR 345
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 8/210 (3%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
SYN +++ ++ + ++++MS G + +TYN ++ ++ G +D+ +M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
G SPD TYNILL L + AL + M++ D ++ +TT++ G+ + G +
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226
+ F ++ KG PD+V YT M++ G L + + L+ M +G + N T +
Sbjct: 452 EEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSD- 510
Query: 227 IRGFCMAGKFDEACTMMKEMESRGCNPNFL 256
G + ++K+M S G P+ L
Sbjct: 511 -------GDITLSAELIKKMLSCGYAPSLL 533
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 123/275 (44%), Gaps = 11/275 (4%)
Query: 21 GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI 80
G+V A+++ E ++ + P +Y+++++ L + ++ M +G D+
Sbjct: 274 GKVLEAKELFEEMVR---MSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADV 330
Query: 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNH 140
++YN ++ + +++ +L EM + G + TYN L+ + A +
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 390
Query: 141 MKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE 200
M G P + + L+ GL G L+ F++M + D+V YT +I G+
Sbjct: 391 MDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK 450
Query: 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNT 260
+E+A LF + KG P++ TY +M+ G C G E + +M+ G N +
Sbjct: 451 VEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN----DC 506
Query: 261 LVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVSKFK 295
+S+ G + + E+I+ M+ G L+ K
Sbjct: 507 TLSD----GDITLSAELIKKMLSCGYAPSLLKDIK 537
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 74/159 (46%)
Query: 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193
A++L + M + PS++ F L+ + + D +M G D+ + ++I
Sbjct: 69 AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128
Query: 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
+ ++ A + M+ G P+ T S++ GFC + +A +++ +M G P
Sbjct: 129 CFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKP 188
Query: 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ + YN ++ +L ++ +A + + + KG ++V+
Sbjct: 189 DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 227
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 41/86 (47%)
Query: 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN 259
+L A DLF M+ P++ +N ++ K+D ++ K+ME G + +N
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 260 TLVSNLRNAGKLAEAHEVIRHMVEKG 285
+++ +++ A ++ M++ G
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLG 150
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 122/221 (55%)
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
+ V+ +++ P ++++N ++ ++G LD+ RL +M +S PD TY+ L++
Sbjct: 260 QKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINA 319
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
L K +K A L + M + G P+ + FTTL+ G SR G +D K + +M +KG PD
Sbjct: 320 LCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPD 379
Query: 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244
+V Y ++ + G+L A+++ DGMI +G P+ TY ++I GFC G + A + K
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRK 439
Query: 245 EMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
EM+ G + + ++ LV + G++ +A +R M+ G
Sbjct: 440 EMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAG 480
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 41/323 (12%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
+++ GFP FNIL+ C G + A+KV + K L +P S+N +++
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSL---QPTVVSFNTLINGYCK 287
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + QM PD+ TY+ ++ A + K+D H L DEM + G P+
Sbjct: 288 VGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVI 347
Query: 118 YNILLH-----------------VLGKGDKP------------------LAALNLLNHMK 142
+ L+H +L KG +P +AA N+++ M
Sbjct: 348 FTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407
Query: 143 EVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202
G P + +TTL+DG R G+++ EM G D V ++ ++ G +
Sbjct: 408 RRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVI 467
Query: 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262
A+ M+ G P+ TY M+ FC G ++KEM+S G P+ + YN L+
Sbjct: 468 DAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLL 527
Query: 263 SNLRNAGKLAEAHEVIRHMVEKG 285
+ L G++ A ++ M+ G
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNIG 550
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 130/280 (46%), Gaps = 2/280 (0%)
Query: 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFR-PFKNSYNAILHALLGIRQYKLIE 65
P + L+ T ++G ++ F S+ F P + N +L ++ + I
Sbjct: 167 PMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGN-LLDRMMKLNPTGTIW 225
Query: 66 WVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL 125
Y ++ D G+ ++ +NI+M + G + ++ DE+ + P ++N L++
Sbjct: 226 GFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGY 285
Query: 126 GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV 185
K L + M++ P V ++ L++ L + +D FDEM +G +P+
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPND 345
Query: 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245
V +T +I + GE++ ++ + M++KG P++ YN+++ GFC G A ++
Sbjct: 346 VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDG 405
Query: 246 MESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
M RG P+ + Y TL+ G + A E+ + M + G
Sbjct: 406 MIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG 445
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 17/256 (6%)
Query: 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMG 107
+ ++H + L++ YQ+M +G PDI+ YN ++ + G L ++D M
Sbjct: 348 FTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407
Query: 108 RSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167
R G PD TY L+ +G AL + M + G + + F+ L+ G+ + G +
Sbjct: 408 RRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVI 467
Query: 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMI 227
+ EM G PD V YT+M+ ++ G+ + L M + G +P+V TYN ++
Sbjct: 468 DAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLL 527
Query: 228 RGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKY 287
G C G+ A ++ M + G P+ + YNTL+ E H RH +Y
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL----------EGHH--RHANSSKRY 575
Query: 288 IH-----LVSKFKRYK 298
I +V+ YK
Sbjct: 576 IQKPEIGIVADLASYK 591
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 150/310 (48%), Gaps = 23/310 (7%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G ++N LI C G A+ +V+ + N I H +L
Sbjct: 189 MVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEI------------SELNLITHTILL 236
Query: 58 IRQYKL--IEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF 115
Y L IE Y+ M G+ PD++T++ ++ + GK+ + LL EM P+
Sbjct: 237 SSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNH 296
Query: 116 HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175
TY L+ L K + AL L + M G ++ +T LMDGL +AG+L + F
Sbjct: 297 VTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKM 356
Query: 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235
+ +P+VV YT ++ AG+L A+ + M+ K +PNV TY+SMI G+ G
Sbjct: 357 LLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGM 416
Query: 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM----VEKGKYI--H 289
+EA +++++ME + PN Y T++ L AGK A E+ + M VE+ YI
Sbjct: 417 LEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDA 476
Query: 290 LVSKFKRYKR 299
LV+ KR R
Sbjct: 477 LVNHLKRIGR 486
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 12/296 (4%)
Query: 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
G + + NI++ E G + + + L P +Y L ++ I
Sbjct: 605 GIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAI 664
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
++ + G YN ++ +LG + ++ +M GF PD T+N L+H
Sbjct: 665 FKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHG 724
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
G AL+ + M E G P+V + T++ GLS AG + + EM ++G PD
Sbjct: 725 YFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPD 784
Query: 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244
Y +I+ G ++ + ++ MI G +P TYN +I F GK +A ++K
Sbjct: 785 DFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARELLK 844
Query: 245 EMESRGCNPNFLVYNTLVSNL------------RNAGKLAEAHEVIRHMVEKGKYI 288
EM RG +PN Y T++S L + A LAEA +++ MVE+ YI
Sbjct: 845 EMGKRGVSPNTSTYCTMISGLCKLCTHPDVEWNKKAMYLAEAKGLLKEMVEEKGYI 900
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 124/286 (43%), Gaps = 40/286 (13%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
SYN ++ +L + +W Y+ M ++G PDI T+NI+M ++ + G + +L D+M
Sbjct: 543 SYNVLISGMLKFGKVG-ADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKM 601
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
G P + NI++ +L + K A+++LN M + P++ + +D S+
Sbjct: 602 KSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRA 661
Query: 167 DA---------------------------CKY--------FFDEMANKGCMPDVVCYTVM 191
DA CK +M +G +PD V + +
Sbjct: 662 DAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSL 721
Query: 192 ITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC 251
+ Y + KA + M+ G PNV TYN++IRG AG E + EM+SRG
Sbjct: 722 MHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGM 781
Query: 252 NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVSKFKRY 297
P+ YN L+S G + + + M+ G LV K Y
Sbjct: 782 RPDDFTYNALISGQAKIGNMKGSMTIYCEMIADG----LVPKTSTY 823
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 11/254 (4%)
Query: 39 FNFRPFKNSYNAILHAL-LGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLD 97
F P +N+++H + + + +Y +M G +PD+ N+++ + ++G+L
Sbjct: 89 FGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLIHSFCKVGRLS 148
Query: 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157
LL S D TYN ++ L + A L+ M ++G P + + TL+
Sbjct: 149 FAISLLRN---RVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLI 205
Query: 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217
DG + GN K DE++ +++ +T++++SY +E+A + M+ G
Sbjct: 206 DGFCKVGNFVRAKALVDEISE----LNLITHTILLSSYYNLHAIEEA---YRDMVMSGFD 258
Query: 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEV 277
P+V T++S+I C GK E +++EME PN + Y TLV +L A A +
Sbjct: 259 PDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALAL 318
Query: 278 IRHMVEKGKYIHLV 291
MV +G + LV
Sbjct: 319 YSQMVVRGIPVDLV 332
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 118/269 (43%), Gaps = 1/269 (0%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M+ G P + +L+ + G R+ + F N P +Y A++ L
Sbjct: 322 MVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGD 381
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
E++ QM ++ P+++TY+ ++ + G L++ LL +M P+ TY
Sbjct: 382 LSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGT 441
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
++ L K K A+ L M+ +G + + L++ L R G + K +M +KG
Sbjct: 442 VIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKG 501
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
D + YT +I + G+ E A + M +G +V +YN +I G GK A
Sbjct: 502 VTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKVG-AD 560
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAG 269
K M +G P+ +N ++++ R G
Sbjct: 561 WAYKGMREKGIEPDIATFNIMMNSQRKQG 589
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 105/238 (44%), Gaps = 1/238 (0%)
Query: 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMG 107
Y ++ L + E ++ + ++ P+++TY ++ + G L ++ +M
Sbjct: 334 YTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQML 393
Query: 108 RSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167
P+ TY+ +++ K A++LL M++ P+ + T++DGL +AG +
Sbjct: 394 EKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEE 453
Query: 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMI 227
EM G + ++ G +++ + L M++KG + Y S+I
Sbjct: 454 MAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLI 513
Query: 228 RGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
F G + A +EM+ RG + + YN L+S + GK+ A + M EKG
Sbjct: 514 DVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKVG-ADWAYKGMREKG 570
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M+E G T+N +I + GL ++V + + K RP +YNA++ I
Sbjct: 741 MMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGN 800
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
K +Y +M +G P TYN+++ +GK+ Q LL EMG+ G SP+ TY
Sbjct: 801 MKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCT 860
Query: 121 LLHVLGK 127
++ L K
Sbjct: 861 MISGLCK 867
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 74/191 (38%), Gaps = 13/191 (6%)
Query: 111 FSPDF-----HTYNILLHVLGK----GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161
F PD Y L H L + ++ A L+ M G P + +L+ +
Sbjct: 47 FDPDLAPIKTRVYVSLFHTLFRLYLSCERLYGAARTLSAMCTFGVVPDSRLWNSLIHQFN 106
Query: 162 RAGNL-DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV 220
G + D + +M G PDV V+I S+ G L A L + +
Sbjct: 107 VNGLVHDQVSLIYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVIS---IDT 163
Query: 221 FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRH 280
TYN++I G C G DEA + EM G P+ + YNTL+ G A ++
Sbjct: 164 VTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDE 223
Query: 281 MVEKGKYIHLV 291
+ E H +
Sbjct: 224 ISELNLITHTI 234
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 162/341 (47%), Gaps = 49/341 (14%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY 61
G T+NILI C C + LA ++ + +K + P + N++L+ +
Sbjct: 108 GISHNLYTYNILINCFCRCSRLSLALALLGKMMK---LGYEPDIVTLNSLLNGFCHGNRI 164
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
+ QM + GY PD +T+ ++ + K + L+D M + G PD TY +
Sbjct: 165 SDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAV 224
Query: 122 LHVLGK-GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
++ L K GD LA LNLLN M+ + +V+ ++T++D L + + D F EM NKG
Sbjct: 225 VNGLCKRGDTDLA-LNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 283
Query: 181 CMPDVVCYTVMIT-----------------------------------SYIAAGELEKAQ 205
P+V+ Y+ +I+ +++ G+L KA+
Sbjct: 284 VRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAE 343
Query: 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265
L++ MI + PN+FTY+S+I GFCM + EA M++ M + C PN + YNTL++
Sbjct: 344 KLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGF 403
Query: 266 RNAGKLAEAHEVIRHMVEKG------KYIHLVSKFKRYKRC 300
A ++ + E+ R M ++G Y L+ F + + C
Sbjct: 404 CKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDC 444
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 6/284 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G T+ ++ C G+ LA ++ + +K+ Y+ ++ +L
Sbjct: 209 MVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKI---EANVVIYSTVIDSLCK 265
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
R ++ +M ++G P+++TY+ ++ G+ RLL +M +P+ T
Sbjct: 266 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVT 325
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
++ L+ K K + A L M + DP++ +++L++G L K + M
Sbjct: 326 FSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMI 385
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
K C+P+VV Y +I + A ++K +LF M +G + N TY ++I GF A D
Sbjct: 386 RKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCD 445
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
A + K+M S G +PN L YN L+ L GKLA+A V ++
Sbjct: 446 NAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 489
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 131/253 (51%), Gaps = 2/253 (0%)
Query: 42 RPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99
RPF + ++ +L A+ + ++ L+ ++M G + ++ TYNI++ R +L
Sbjct: 73 RPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLA 132
Query: 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159
LL +M + G+ PD T N LL+ G++ A+ L++ M E+G+ P + FTTL+ G
Sbjct: 133 LALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHG 192
Query: 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219
L D M +GC PD+V Y ++ G+ + A +L + M N
Sbjct: 193 LFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEAN 252
Query: 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIR 279
V Y+++I C D+A + EME++G PN + Y++L+S L N G+ ++A ++
Sbjct: 253 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLS 312
Query: 280 HMVEKGKYIHLVS 292
M+E+ +LV+
Sbjct: 313 DMIERKINPNLVT 325
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 14/299 (4%)
Query: 1 MIENGFPTTARTFNILI-------CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILH 53
M+E G+ TF LI V L ++V+R + L +Y A+++
Sbjct: 174 MVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLV-------TYGAVVN 226
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
L L + +M +++ Y+ V+ + + D L EM G P
Sbjct: 227 GLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP 286
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
+ TY+ L+ L + A LL+ M E +P+++ F+ L+D + G L + +
Sbjct: 287 NVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLY 346
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
+EM + P++ Y+ +I + L +A+ + + MI K LPNV TYN++I GFC A
Sbjct: 347 EEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKA 406
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ D+ + +EM RG N + Y TL+ A A V + MV G + ++++
Sbjct: 407 KRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 465
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 116/229 (50%)
Query: 42 RPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHR 101
RP +Y++++ L ++ + M + P+++T++ ++ A + GKL + +
Sbjct: 285 RPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEK 344
Query: 102 LLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161
L +EM + P+ TY+ L++ D+ A +L M P+V+ + TL++G
Sbjct: 345 LYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFC 404
Query: 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVF 221
+A +D F EM+ +G + + V YT +I + A + + AQ +F M++ G PN+
Sbjct: 405 KAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 464
Query: 222 TYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK 270
TYN ++ G C GK +A + + ++ P+ YN ++ + AGK
Sbjct: 465 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 7/222 (3%)
Query: 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI--EWVYQQMSDE 74
+C G A +++ I+ K+ P +++A++ A +++ KL+ E +Y++M
Sbjct: 298 LCNYGRWSDASRLLSDMIERKI---NPNLVTFSALIDAF--VKKGKLVKAEKLYEEMIKR 352
Query: 75 GYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAA 134
P+I TY+ ++ L +L + ++L+ M R P+ TYN L++ K +
Sbjct: 353 SIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKG 412
Query: 135 LNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS 194
+ L M + G + + +TTL+ G +A + D + F +M + G P+++ Y +++
Sbjct: 413 MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDG 472
Query: 195 YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236
G+L KA +F+ + P+++TYN MI G C AGK+
Sbjct: 473 LCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKW 514
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%)
Query: 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193
A+ L M + PS++ F+ L+ +++ D F ++M G ++ Y ++I
Sbjct: 62 AIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILIN 121
Query: 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
+ L A L M+ G P++ T NS++ GFC + +A ++ +M G P
Sbjct: 122 CFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKP 181
Query: 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ + + TL+ L K +EA +I MV++G LV+
Sbjct: 182 DTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVT 220
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 78/187 (41%)
Query: 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154
+LD L M +S P ++ LL + K +K ++ M+ +G ++ +
Sbjct: 58 ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYN 117
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
L++ R L +M G PD+V ++ + + A L D M+
Sbjct: 118 ILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEM 177
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
G P+ T+ ++I G + K EA ++ M RGC P+ + Y +V+ L G A
Sbjct: 178 GYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLA 237
Query: 275 HEVIRHM 281
++ M
Sbjct: 238 LNLLNKM 244
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
L GLS LD F MA P ++ ++ ++++ + + + M
Sbjct: 49 VLRTGLSDI-ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEIL 107
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
G N++TYN +I FC + A ++ +M G P+ + N+L++ + ++++A
Sbjct: 108 GISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDA 167
Query: 275 HEVIRHMVEKG 285
++ MVE G
Sbjct: 168 VALVDQMVEMG 178
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 2/244 (0%)
Query: 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQM 71
T+N +I G GLA + F++ +L F P +YN++L+A R + ++ VYQQM
Sbjct: 334 TYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQM 393
Query: 72 SDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM-GRSGFSPDFHTYNILLHVLGKGDK 130
G+ D +TYN ++ + G+LD +L +M G SG +PD TY +L+ LGK ++
Sbjct: 394 QKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453
Query: 131 PLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTV 190
+ A L++ M +VG P++ ++ L+ G ++AG + + F M G PD + Y+V
Sbjct: 454 TVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513
Query: 191 MITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR- 249
M+ + E KA L+ MI+ G P+ Y MI G + D+ +++ME
Sbjct: 514 MLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELC 573
Query: 250 GCNP 253
G NP
Sbjct: 574 GMNP 577
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 131/285 (45%), Gaps = 2/285 (0%)
Query: 1 MIEN-GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR 59
M+ N G A T+N L+ C V+ F + +P +YNA++
Sbjct: 287 MVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCG 346
Query: 60 QYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYN 119
E ++ ++ +G+ PD +TYN ++ A R ++ + +M + GF D TYN
Sbjct: 347 LAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYN 406
Query: 120 ILLHVLGKGDKPLAALNLLNHMKEV-GFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMAN 178
++H+ GK + AL L MK + G +P + +T L+D L +A EM +
Sbjct: 407 TIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLD 466
Query: 179 KGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE 238
G P + Y+ +I Y AG+ E+A+D F M+ G P+ Y+ M+ + +
Sbjct: 467 VGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRK 526
Query: 239 ACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283
A + ++M S G P++ +Y ++ L + + + IR M E
Sbjct: 527 AWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEE 571
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 13/254 (5%)
Query: 37 KLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA-------PDILTYNIVMCA 89
+ N R + + ++ A+LG+ L W + ++ E + + YN +M
Sbjct: 179 EWLNLRHWHSPNARMVAAILGV----LGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGV 234
Query: 90 KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK--GDKPLAALNLLNHMKEVGFD 147
R GK + L+D M + G PD ++N L++ K G P A+ LL+ ++ G
Sbjct: 235 YSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLR 294
Query: 148 PSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDL 207
P + + TL+ SR NLD F++M C PD+ Y MI+ Y G +A+ L
Sbjct: 295 PDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERL 354
Query: 208 FDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRN 267
F + KG P+ TYNS++ F ++ + ++M+ G + + YNT++
Sbjct: 355 FMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGK 414
Query: 268 AGKLAEAHEVIRHM 281
G+L A ++ + M
Sbjct: 415 QGQLDLALQLYKDM 428
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 108/246 (43%), Gaps = 1/246 (0%)
Query: 41 FRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100
RP +YN +L A V++ M PD+ TYN ++ R G +
Sbjct: 293 LRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAE 352
Query: 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGL 160
RL E+ GF PD TYN LL+ + + M+++GF + + T++
Sbjct: 353 RLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMY 412
Query: 161 SRAGNLDACKYFFDEMAN-KGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219
+ G LD + +M G PD + YTV+I S A +A L M+ G P
Sbjct: 413 GKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPT 472
Query: 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIR 279
+ TY+++I G+ AGK +EA M G P+ L Y+ ++ L + +A + R
Sbjct: 473 LQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYR 532
Query: 280 HMVEKG 285
M+ G
Sbjct: 533 DMISDG 538
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 3/241 (1%)
Query: 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKL--DQFHRLLDE 105
YNA++ ++ + + M G PD++++N ++ A+ + G L + LLD
Sbjct: 228 YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDM 287
Query: 106 MGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165
+ SG PD TYN LL + A+ + M+ P + + ++ R G
Sbjct: 288 VRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGL 347
Query: 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNS 225
+ F E+ KG PD V Y ++ ++ EK ++++ M G + TYN+
Sbjct: 348 AAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNT 407
Query: 226 MIRGFCMAGKFDEACTMMKEMES-RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
+I + G+ D A + K+M+ G NP+ + Y L+ +L A + EA ++ M++
Sbjct: 408 IIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDV 467
Query: 285 G 285
G
Sbjct: 468 G 468
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 139/331 (41%), Gaps = 46/331 (13%)
Query: 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNF--RPFKNSYNAILHALLGIRQYKLIE 65
+ ++ ++ C G A +VV + ++K F+F P Y I+ A + ++ E
Sbjct: 717 SVCKSMVVVYCKLGFPETAHQVVNQ-AETKGFHFACSPM---YTDIIEAYGKQKLWQKAE 772
Query: 66 WVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL 125
V + G PD+ T+N +M A + G ++ + + M R G SP + NILLH L
Sbjct: 773 SVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHAL 832
Query: 126 GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV 185
+ ++ ++++GF S ++D +RAGN+ K + M G +P +
Sbjct: 833 CVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTI 892
Query: 186 VCYTVMIT----------SYIAAGELEKAQ-------------------------DLFDG 210
Y +MI + I E+E+A ++
Sbjct: 893 RLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQR 952
Query: 211 MITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK 270
+ G P+ TYN++I +C + +E +M++M + G +P Y +L+S
Sbjct: 953 IKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKC 1012
Query: 271 LAEAHEVIRHMVEKG-----KYIHLVSKFKR 296
L +A ++ ++ KG + H + K R
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 108/265 (40%), Gaps = 6/265 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M G+ T R + ++I C V A +V ++ NF+ +N++L
Sbjct: 883 MKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEA---NFKVELAIWNSMLKMYTA 939
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
I YK VYQ++ + G PD TYN ++ R + ++ + L+ +M G P T
Sbjct: 940 IEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDT 999
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y L+ GK A L + G + T+M +G+ + M
Sbjct: 1000 YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK 1059
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
N G P + +++ SY ++G ++A+ + + Y+S+I + + ++
Sbjct: 1060 NAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYN 1119
Query: 238 EACTMMKEMESRGCNPNFLVYNTLV 262
+ EM+ G P+ ++ V
Sbjct: 1120 SGIERLLEMKKEGLEPDHRIWTCFV 1144
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 125/286 (43%), Gaps = 6/286 (2%)
Query: 3 ENGFPTTARTFNILICT---CGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR 59
++G +T+N L+ CG AR + ++ P S N +LHAL
Sbjct: 780 QSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRD---GPSPTVESINILLHALCVDG 836
Query: 60 QYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYN 119
+ + + V +++ D G+ + +++ A R G + + ++ M +G+ P Y
Sbjct: 837 RLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYR 896
Query: 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179
+++ +L KG + A +++ M+E F + + +++ + + + +
Sbjct: 897 MMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKET 956
Query: 180 GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239
G PD Y +I Y E+ L M G P + TY S+I F ++A
Sbjct: 957 GLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQA 1016
Query: 240 CTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ +E+ S+G + Y+T++ R++G ++A ++++ M G
Sbjct: 1017 EQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAG 1062
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 126/284 (44%), Gaps = 6/284 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ +G T + NIL+ C G + VVE + F+ K+S +L A
Sbjct: 813 MMRDGPSPTVESINILLHALCVDGRLEELYVVVEEL---QDMGFKISKSSILLMLDAFAR 869
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ +Y M GY P I Y +++ + ++ ++ EM + F +
Sbjct: 870 AGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAI 929
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
+N +L + + + + +KE G +P + TL+ R + +M
Sbjct: 930 WNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMR 989
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
N G P + Y +I+++ LE+A+ LF+ +++KG + Y++M++ +G
Sbjct: 990 NLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDS 1049
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
+A +++ M++ G P + L+ + ++G EA +V+ ++
Sbjct: 1050 KAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNL 1093
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/323 (18%), Positives = 120/323 (37%), Gaps = 40/323 (12%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M++ G T +T++ LIC + G + + F +P +Y+ +L LL +
Sbjct: 464 MLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNE 523
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGR-SGFSP------ 113
+ +Y+ M +G+ P Y +++ + + D + + +M G +P
Sbjct: 524 TRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSV 583
Query: 114 -------DFHTYNI--------------LLHVLGK---GDKPLAALNLLNHMKEVGFDPS 149
D + LL +LG + A LL +KE
Sbjct: 584 LVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSK 643
Query: 150 VLHFTTLMDGLSRAGNLDAC--KYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDL 207
L L+ + NL A +YF D + C Y ++ +A +A +
Sbjct: 644 RLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQV 703
Query: 208 FDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRG----CNPNFLVYNTLVS 263
F + G + SM+ +C G + A ++ + E++G C+P +Y ++
Sbjct: 704 FSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP---MYTDIIE 760
Query: 264 NLRNAGKLAEAHEVIRHMVEKGK 286
+A V+ ++ + G+
Sbjct: 761 AYGKQKLWQKAESVVGNLRQSGR 783
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 139/288 (48%), Gaps = 7/288 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+E G T+N LI C G + A VVE KL P +YN ++
Sbjct: 384 MLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL---SPNTRTYNELIKGYCK 440
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+K + V +M + PD++TYN ++ + R G D +RLL M G PD T
Sbjct: 441 SNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y ++ L K + A +L + +++ G +P+V+ +T L+DG +AG +D ++M
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+K C+P+ + + +I A G+L++A L + M+ G P V T +I G FD
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFD 619
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
A + ++M S G P+ Y T + G+L +A +++ M E G
Sbjct: 620 HAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 149/325 (45%), Gaps = 42/325 (12%)
Query: 1 MIENGFPTTARTFNIL-ICTCGEVGLARKVVE---RFIKSKLFN--FRPFKNSYNAILHA 54
+I NG+ +L I +C VG A V++ + K + F ++ YN +L++
Sbjct: 133 LINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNS 192
Query: 55 LLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD 114
L ++ VY +M ++ P+I TYN ++ +LG +++ ++ + ++ +G PD
Sbjct: 193 LARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPD 252
Query: 115 FHTYNILL-----------------------------------HVLGKGDKPLAALNLLN 139
F TY L+ H L + A++L
Sbjct: 253 FFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFV 312
Query: 140 HMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAG 199
MK+ P+V +T L+ L + EM G P++ YTV+I S +
Sbjct: 313 KMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372
Query: 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN 259
+ EKA++L M+ KG +PNV TYN++I G+C G ++A +++ MESR +PN YN
Sbjct: 373 KFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYN 432
Query: 260 TLVSNLRNAGKLAEAHEVIRHMVEK 284
L+ + + +A V+ M+E+
Sbjct: 433 ELIKGYCKSN-VHKAMGVLNKMLER 456
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%)
Query: 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMK 142
YN ++ + R G +D+ ++ EM P+ +TYN +++ K A ++ +
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 143 EVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202
E G DP +T+L+ G + +LD+ F+EM KGC + V YT +I A ++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262
+A DLF M P V TY +I+ C + + EA ++KEME G PN Y L+
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 263 SNLRNAGKLAEAHEVIRHMVEKG 285
+L + K +A E++ M+EKG
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKG 388
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 12/271 (4%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFR---PFKNSYNAILHA 54
M+E T+N LI C G A +++ L N R P + +Y +++ +
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLS------LMNDRGLVPDQWTYTSMIDS 506
Query: 55 LLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD 114
L ++ + ++ + +G P+++ Y ++ + GK+D+ H +L++M P+
Sbjct: 507 LCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPN 566
Query: 115 FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFD 174
T+N L+H L K A L M ++G P+V T L+ L + G+ D F
Sbjct: 567 SLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQ 626
Query: 175 EMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234
+M + G PD YT I +Y G L A+D+ M G P++FTY+S+I+G+ G
Sbjct: 627 QMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLG 686
Query: 235 KFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265
+ + A ++K M GC P+ + +L+ +L
Sbjct: 687 QTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 140/308 (45%), Gaps = 13/308 (4%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+E+ T+N ++ C G V A + V + +++ L P +Y +++
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGL---DPDFFTYTSLIMGYCQ 265
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ V+ +M +G + + Y ++ ++D+ L +M P T
Sbjct: 266 RKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRT 325
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y +L+ L ++ ALNL+ M+E G P++ +T L+D L + + +M
Sbjct: 326 YTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQML 385
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
KG MP+V+ Y +I Y G +E A D+ + M ++ PN TYN +I+G+C +
Sbjct: 386 EKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VH 444
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLV 291
+A ++ +M R P+ + YN+L+ +G A+ ++ M ++G Y ++
Sbjct: 445 KAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMI 504
Query: 292 SKFKRYKR 299
+ KR
Sbjct: 505 DSLCKSKR 512
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 8/282 (2%)
Query: 7 PTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKL 63
P T RT+N LI C V A V+ + ++ K+ P +YN+++ +
Sbjct: 426 PNT-RTYNELIKGYCK-SNVHKAMGVLNKMLERKVL---PDVVTYNSLIDGQCRSGNFDS 480
Query: 64 IEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123
+ M+D G PD TY ++ + + ++++ L D + + G +P+ Y L+
Sbjct: 481 AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID 540
Query: 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP 183
K K A +L M P+ L F L+ GL G L ++M G P
Sbjct: 541 GYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQP 600
Query: 184 DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMM 243
V T++I + G+ + A F M++ G P+ TY + I+ +C G+ +A MM
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 244 KEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+M G +P+ Y++L+ + G+ A +V++ M + G
Sbjct: 661 AKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 132/340 (38%), Gaps = 61/340 (17%)
Query: 3 ENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR 59
+N P + TFN LI C G++ A + E+ +K +P ++ ++H LL
Sbjct: 561 KNCLPNSL-TFNALIHGLCADGKLKEATLLEEKMVK---IGLQPTVSTDTILIHRLLKDG 616
Query: 60 QYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYN 119
+ +QQM G PD TY + R G+L ++ +M +G SPD TY+
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYS 676
Query: 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPS------------------------------ 149
L+ G + A ++L M++ G +PS
Sbjct: 677 SLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMS 736
Query: 150 -VLHFTTLMD----------------------GLSRAGNLDACKYFFDEMA-NKGCMPDV 185
++ F T+++ G+ GNL + FD M N+G P
Sbjct: 737 NMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSE 796
Query: 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245
+ + +++ + +A + D MI G LP + + +I G G+ + ++ +
Sbjct: 797 LVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQN 856
Query: 246 MESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ G + L + ++ + G + +E+ M + G
Sbjct: 857 LLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNG 896
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
CY ++ S G +++ + ++ M+ PN++TYN M+ G+C G +EA + ++
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI 244
Query: 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLV 291
G +P+F Y +L+ L A +V M KG Y HL+
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLI 295
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 124/318 (38%), Gaps = 58/318 (18%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M++ G T T ILI + G RF + +P ++Y + R+
Sbjct: 593 MVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY--CRE 650
Query: 61 YKLI--EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTY 118
+L+ E + +M + G +PD+ TY+ ++ LG+ + +L M +G P HT+
Sbjct: 651 GRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTF 710
Query: 119 -NILLHVL------GKGDKP-LAALN----------LLNHMKEVGFDPSVLHFTTLMDGL 160
+++ H+L KG +P L A++ LL M E P+ + L+ G+
Sbjct: 711 LSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGI 770
Query: 161 SRAGNLDACKYFFDEMA-NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219
GNL + FD M N+G P + + +++ + +A + D MI G LP
Sbjct: 771 CEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQ 830
Query: 220 VFTYNSMIRGFCMAGKFDEACTMMKE---------------------------------- 245
+ + +I G G+ + ++ +
Sbjct: 831 LESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFN 890
Query: 246 -MESRGCNPNFLVYNTLV 262
ME GC + Y+ L+
Sbjct: 891 VMEKNGCKFSSQTYSLLI 908
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+E+ A+++ LI C G + +A KV + +++ P + +NA+L
Sbjct: 751 MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNE--GISPSELVFNALLSCCCK 808
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++++ V M G+ P + + +++C Y+ G+ ++ + + + G+ D
Sbjct: 809 LKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELA 868
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159
+ I++ +GK A L N M++ G S ++ L++G
Sbjct: 869 WKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 145/292 (49%), Gaps = 6/292 (2%)
Query: 4 NGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
NG T NI+I C C + A V+ + +K + P ++N ++ L +
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMK---LGYEPDTTTFNTLIKGLFLEGK 173
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ +M + G PD++TYN ++ R G LL +M D TY+
Sbjct: 174 VSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYST 233
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
++ L + AA++L M+ G SV+ + +L+ GL +AG + +M ++
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
+P+V+ + V++ ++ G+L++A +L+ MIT+G PN+ TYN+++ G+CM + EA
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEAN 353
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
M+ M C+P+ + + +L+ ++ + +V R++ ++G + V+
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT 405
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 14/288 (4%)
Query: 1 MIENGFPTTARTFNIL---ICTCGEVGLA----RKVVERFIKSKLFNFRPFKNSYNAILH 53
M+ENG T+N + IC G+ LA RK+ ER +K+ +F +Y+ I+
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVF-------TYSTIID 236
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
+L ++++M +G ++TYN ++ + GK + LL +M P
Sbjct: 237 SLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP 296
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
+ T+N+LL V K K A L M G P+++ + TLMDG L
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
D M C PD+V +T +I Y ++ +F + +G + N TY+ +++GFC +
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
GK A + +EM S G P+ + Y L+ L + GKL +A E+ +
Sbjct: 417 GKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 135/258 (52%), Gaps = 2/258 (0%)
Query: 37 KLFNFRPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94
++ RP + ++ A+ +Q+ L+ +Q+ G A +I T NI++ R
Sbjct: 78 EMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCC 137
Query: 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154
K + +L ++ + G+ PD T+N L+ L K A+ L++ M E G P V+ +
Sbjct: 138 KTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYN 197
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
++++G+ R+G+ +M + DV Y+ +I S G ++ A LF M TK
Sbjct: 198 SIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 257
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
G +V TYNS++RG C AGK+++ ++K+M SR PN + +N L+ GKL EA
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEA 317
Query: 275 HEVIRHMVEKGKYIHLVS 292
+E+ + M+ +G ++++
Sbjct: 318 NELYKEMITRGISPNIIT 335
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 36/193 (18%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
+Y+ ++ + KL E ++Q+M G PD++TY I++ GKL++ + +++
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464
Query: 107 GRS-----------------------------------GFSPDFHTYNILLHVLGKGDKP 131
+S G P+ TY +++ L K
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524
Query: 132 LAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVM 191
A LL M+E G P+ + TL+ R G+L A +EM + G D M
Sbjct: 525 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK-M 583
Query: 192 ITSYIAAGELEKA 204
+ + +GEL+K+
Sbjct: 584 VIDMLLSGELDKS 596
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ +G T+ IL+ C G++ A ++ E KSK+ Y I+ +
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM---YTTIIEGMCK 485
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + ++ + +G P+++TY +++ + G L + + LL +M G +P+ T
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L+ + A+ L+ MK GF ++D L +G LD K F D ++
Sbjct: 546 YNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML-LSGELD--KSFLDMLS 602
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 162 RAGNLDACK----YFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217
R+G +D K F EM +P +V ++ ++ + D + G
Sbjct: 61 RSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIA 120
Query: 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEV 277
N++T N MI FC K A +++ ++ G P+ +NTL+ L GK++EA +
Sbjct: 121 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVL 180
Query: 278 IRHMVEKG 285
+ MVE G
Sbjct: 181 VDRMVENG 188
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 130 bits (328), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 152/313 (48%), Gaps = 43/313 (13%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
T+NILI C ++ LA ++ + +K + P + +++L+ ++ +
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMK---LGYEPSIVTLSSLLNGYCHGKRISDAVALV 178
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK- 127
QM + GY PD +T+ ++ + K + L+D M + G P+ TY ++++ L K
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238
Query: 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC 187
GD L ALNLLN M+ + V+ F T++D L + ++D F EM KG P+VV
Sbjct: 239 GDTDL-ALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT 297
Query: 188 YTVMIT-----------------------------------SYIAAGELEKAQDLFDGMI 212
Y+ +I+ +++ G+ +A+ L+D MI
Sbjct: 298 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI 357
Query: 213 TKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLA 272
+ P++FTYNS++ GFCM + D+A M + M S+ C P+ + YNTL+ + ++
Sbjct: 358 KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVE 417
Query: 273 EAHEVIRHMVEKG 285
+ E+ R M +G
Sbjct: 418 DGTELFREMSHRG 430
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M G T++ LI C+ G A +++ I+ K+ P ++NA++ A +
Sbjct: 286 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI---NPNLVTFNALIDAFVK 342
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ E +Y M PDI TYN ++ +LD+ ++ + M PD T
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT 402
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L+ K + L M G + +TTL+ GL G+ D + F +M
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+ G PD++ Y++++ G+LEKA ++FD M +++ Y +MI G C AGK D
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ + + +G PN + YNT++S L + L EA+ +++ M E G
Sbjct: 523 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 570
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 6/284 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G T+ +++ C G+ LA ++ + +K+ +N I+ +L
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKI---EADVVIFNTIIDSLCK 272
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
R ++++M +G P+++TY+ ++ G+ +LL +M +P+ T
Sbjct: 273 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 332
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
+N L+ K K + A L + M + DP + + +L++G LD K F+ M
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 392
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+K C PDVV Y +I + + +E +LF M +G + + TY ++I+G G D
Sbjct: 393 SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 452
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
A + K+M S G P+ + Y+ L+ L N GKL +A EV +M
Sbjct: 453 NAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 132/285 (46%), Gaps = 8/285 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MIE TFN LI G+ A K+ + IK + P +YN++++
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI---DPDIFTYNSLVNGFCM 377
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + +++ M + PD++TYN ++ + +++ L EM G D T
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVT 437
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y L+ L A + M G P ++ ++ L+DGL G L+ FD M
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 497
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
D+ YT MI AG+++ DLF + KG PNV TYN+MI G C
Sbjct: 498 KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 557
Query: 238 EACTMMKEMESRGCNPNFLVYNTLV-SNLRNAGKLAEAHEVIRHM 281
EA ++K+M+ G PN YNTL+ ++LR+ K A A E+IR M
Sbjct: 558 EAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA-ELIREM 601
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 133/292 (45%), Gaps = 14/292 (4%)
Query: 1 MIENGFPTTARTFNILI-------CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILH 53
M+E G+ TF LI V L ++V+R + L +Y +++
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV-------TYGVVVN 233
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
L L + +M D++ +N ++ + + +D L EM G P
Sbjct: 234 GLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP 293
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
+ TY+ L+ L + A LL+ M E +P+++ F L+D + G + +
Sbjct: 294 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLY 353
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
D+M + PD+ Y ++ + L+KA+ +F+ M++K P+V TYN++I+GFC +
Sbjct: 354 DDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKS 413
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ ++ + +EM RG + + Y TL+ L + G A +V + MV G
Sbjct: 414 KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 130/253 (51%), Gaps = 2/253 (0%)
Query: 42 RPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99
RP + +N +L A+ ++++ ++ + ++M + TYNI++ R ++
Sbjct: 80 RPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLA 139
Query: 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159
LL +M + G+ P T + LL+ G + A+ L++ M E+G+ P + FTTL+ G
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199
Query: 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219
L D M +GC P++V Y V++ G+ + A +L + M +
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD 259
Query: 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIR 279
V +N++I C D+A + KEME++G PN + Y++L+S L + G+ ++A +++
Sbjct: 260 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 319
Query: 280 HMVEKGKYIHLVS 292
M+EK +LV+
Sbjct: 320 DMIEKKINPNLVT 332
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 6/251 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI+ T+N L+ C + A+++ E + F P +YN ++
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF---PDVVTYNTLIKGFCK 412
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ + ++++MS G D +TY ++ + G D ++ +M G PD T
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMT 472
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y+ILL L K AL + ++M++ + +TT+++G+ +AG +D F ++
Sbjct: 473 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS 532
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
KG P+VV Y MI+ + L++A L M G LPN TYN++IR G
Sbjct: 533 LKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKA 592
Query: 238 EACTMMKEMES 248
+ +++EM S
Sbjct: 593 ASAELIREMRS 603
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 21/186 (11%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ +G P T++IL+ C G++ A +V + KS++ + Y ++ +
Sbjct: 461 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI---KLDIYIYTTMIEGMCK 517
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIV---MCAKYRLGKLDQFHRLLDEMGRSGFSPD 114
+ ++ +S +G P+++TYN + +C+K RL L + + LL +M G P+
Sbjct: 518 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK-RL--LQEAYALLKKMKEDGPLPN 574
Query: 115 FHTYNILLHV-LGKGDKPLAALNLLNHMKEVGF--DPSVLHFTTLMDGLSRAGNLDACKY 171
TYN L+ L GDK A+ L+ M+ F D S + L+ + G LD K
Sbjct: 575 SGTYNTLIRAHLRDGDKA-ASAELIREMRSCRFVGDASTI---GLVANMLHDGRLD--KS 628
Query: 172 FFDEMA 177
F D ++
Sbjct: 629 FLDMLS 634
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 55/120 (45%)
Query: 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNS 225
LD F M +P +V + ++++ + + L + M + ++TYN
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125
Query: 226 MIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+I FC + A ++ +M G P+ + ++L++ + ++++A ++ MVE G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%)
Query: 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN 259
+L+ A LF GM+ LP++ +N ++ KFD ++ ++M+ YN
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 260 TLVSNLRNAGKLAEAHEVIRHMVEKG 285
L++ +++ A ++ M++ G
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLG 150
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
S + +L + +R+ V M G+A ++ +NI++ R + + LL EM
Sbjct: 109 SLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREM 168
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
R+ PD +YN ++ +G + AL L N MK G S++ + L+D +AG +
Sbjct: 169 RRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKM 228
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226
D F EM G D+V YT +I + GEL++ + LFD ++ +G P TYN++
Sbjct: 229 DEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTL 288
Query: 227 IRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
IRGFC G+ EA + + M RG PN Y L+ L GK EA +++ M+EK +
Sbjct: 289 IRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDE 348
Query: 287 YIHLVS 292
+ V+
Sbjct: 349 EPNAVT 354
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 114/218 (52%)
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
+ ++M PD+ +YN V+ +L++ L +EM SG S T+ IL+
Sbjct: 164 LLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFC 223
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
K K A+ L MK +G + ++ +T+L+ G G LD K FDE+ +G P +
Sbjct: 224 KAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAI 283
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
Y +I + G+L++A ++F+ MI +G PNV+TY +I G C GK EA ++ M
Sbjct: 284 TYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM 343
Query: 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
+ PN + YN +++ L G +A+A E++ M ++
Sbjct: 344 IEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKR 381
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 134/276 (48%), Gaps = 4/276 (1%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
T+NIL+ C G++ A K++ +K + P SYNA++H L + +Y
Sbjct: 389 TYNILLGGLCAKGDLDEASKLLYLMLKDSSYT-DPDVISYNALIHGLCKENRLHQALDIY 447
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
+ ++ A D +T NI++ + + G +++ L ++ S + TY ++ K
Sbjct: 448 DLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKT 507
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
A LL M+ PSV + L+ L + G+LD F+EM PDVV +
Sbjct: 508 GMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSF 567
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
+MI + AG+++ A+ L GM G P++FTY+ +I F G DEA + +M
Sbjct: 568 NIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVD 627
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
G P+ + ++++ + G+ + E+++ +V+K
Sbjct: 628 SGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDK 663
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 140/297 (47%), Gaps = 8/297 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
++E G A T+N LI C G++ A ++ E I+ + RP +Y ++ L G
Sbjct: 273 VLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGV---RPNVYTYTGLIDGLCG 329
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + K + M ++ P+ +TYNI++ + G + +++ M + PD T
Sbjct: 330 VGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNIT 389
Query: 118 YNILLHVL-GKGDKPLAALNLLNHMKEVGF-DPSVLHFTTLMDGLSRAGNLDACKYFFDE 175
YNILL L KGD A+ L +K+ + DP V+ + L+ GL + L +D
Sbjct: 390 YNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDL 449
Query: 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235
+ K D V +++ S + AG++ KA +L+ + + N TY +MI GFC G
Sbjct: 450 LVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGM 509
Query: 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+ A ++ +M P+ YN L+S+L G L +A + M + +VS
Sbjct: 510 LNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVS 566
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 12/293 (4%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ GF NIL+ C E G A ++ ++ L P SYN ++
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLM---PDVFSYNTVIRGFCE 189
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ + + +M G + ++T+ I++ A + GK+D+ L EM G D
Sbjct: 190 GKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVV 249
Query: 118 YNILLHVL---GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFD 174
Y L+ G+ D+ A L + + E G P + + TL+ G + G L F+
Sbjct: 250 YTSLIRGFCDCGELDRGKA---LFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFE 306
Query: 175 EMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234
M +G P+V YT +I G+ ++A L + MI K + PN TYN +I C G
Sbjct: 307 FMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDG 366
Query: 235 KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKY 287
+A +++ M+ R P+ + YN L+ L G L EA +++ M++ Y
Sbjct: 367 LVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSY 419
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 135/294 (45%), Gaps = 16/294 (5%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MIE A T+NI+I C G V A ++VE K + RP +YN +L L
Sbjct: 343 MIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRT---RPDNITYNILLGGLCA 399
Query: 58 IRQY-KLIEWVYQQMSDEGYA-PDILTYNIV---MCAKYRLGK-LDQFHRLLDEMGRSGF 111
+ + +Y + D Y PD+++YN + +C + RL + LD + L++++G
Sbjct: 400 KGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLG---- 455
Query: 112 SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKY 171
+ D T NILL+ K A+ L + + + +T ++DG + G L+ K
Sbjct: 456 AGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKG 515
Query: 172 FFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231
+M P V Y +++S G L++A LF+ M P+V ++N MI G
Sbjct: 516 LLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSL 575
Query: 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
AG A +++ M G +P+ Y+ L++ G L EA MV+ G
Sbjct: 576 KAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSG 629
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 141/314 (44%), Gaps = 38/314 (12%)
Query: 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEW 66
P T T +C+ G++ A +V+ I S RP Y ++ L ++
Sbjct: 417 PYTYGTVVKGMCSSGDLDGAYNIVKEMIAS---GCRPNVVIYTTLIKTFLQNSRFGDAMR 473
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
V ++M ++G APDI YN ++ + ++D+ L EM +G P+ TY +
Sbjct: 474 VLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYI 533
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVL----------------------------------- 151
+ + +A + M+E G P+ +
Sbjct: 534 EASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAK 593
Query: 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGM 211
+T LM+GL + +D + F EM KG PDV Y V+I + G ++KA +FD M
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
Query: 212 ITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKL 271
+ +G PNV YN ++ GFC +G+ ++A ++ EM +G +PN + Y T++ +G L
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713
Query: 272 AEAHEVIRHMVEKG 285
AEA + M KG
Sbjct: 714 AEAFRLFDEMKLKG 727
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 11/288 (3%)
Query: 1 MIENGFPTTARTFNILIC---TCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ENG A T+ I E A K V+ + + P K +++
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVL---PNKVLCTGLINEY-- 567
Query: 58 IRQYKLIEW--VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF 115
++ K+IE Y+ M D+G D TY ++M ++ K+D + EM G +PD
Sbjct: 568 CKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627
Query: 116 HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175
+Y +L++ K A ++ + M E G P+V+ + L+ G R+G ++ K DE
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687
Query: 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235
M+ KG P+ V Y +I Y +G+L +A LFD M KG +P+ F Y +++ G C
Sbjct: 688 MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND 747
Query: 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283
+ A T+ +GC + +N L++ + GK EV+ +++
Sbjct: 748 VERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMD 794
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 129/269 (47%), Gaps = 14/269 (5%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLF-------NFRPFKNSYNAILH 53
M E G +N LI +GL++ +R +++ F +P +Y A +
Sbjct: 478 MKEQGIAPDIFCYNSLI-----IGLSK--AKRMDEARSFLVEMVENGLKPNAFTYGAFIS 530
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
+ ++ + ++M + G P+ + ++ + GK+ + M G
Sbjct: 531 GYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILG 590
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
D TY +L++ L K DK A + M+ G P V + L++G S+ GN+ F
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
DEM +G P+V+ Y +++ + +GE+EKA++L D M KG PN TY ++I G+C +
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLV 262
G EA + EM+ +G P+ VY TLV
Sbjct: 711 GDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 20/288 (6%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+E +T+++LI C G V L + V+ F+ K A L+
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVL----------FKTEKEFRTATLNVDGA 261
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ + + M +G P TY++++ ++ +L+ LL EM G S D HT
Sbjct: 262 LK-------LKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHT 314
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y++L+ L KG AA L++ M G + + + +S+ G ++ K FD M
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMI 374
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
G +P Y +I Y + + +L M + + + +TY ++++G C +G D
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
A ++KEM + GC PN ++Y TL+ + +A V++ M E+G
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 120/289 (41%), Gaps = 8/289 (2%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALL---G 57
M+ +G ++ IC + G+ K F P +Y +++
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397
Query: 58 IRQ-YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH 116
+RQ Y+L+ +M TY V+ G LD + ++ EM SG P+
Sbjct: 398 VRQGYELL----VEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453
Query: 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM 176
Y L+ + + A+ +L MKE G P + + +L+ GLS+A +D + F EM
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513
Query: 177 ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236
G P+ Y I+ YI A E A M G LPN +I +C GK
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573
Query: 237 DEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
EAC+ + M +G + Y L++ L K+ +A E+ R M KG
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG 622
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 117/277 (42%), Gaps = 38/277 (13%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
+Y +++ L + E ++++M +G APD+ +Y +++ +LG + + + DEM
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
G +P+ YN+LL + + A LL+ M G P+ + + T++DG ++G+L
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLF------------------ 208
FDEM KG +PD YT ++ ++E+A +F
Sbjct: 714 AEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALI 773
Query: 209 --------------------DGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
DG + PN TYN MI C G + A + +M++
Sbjct: 774 NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
P + Y +L++ G+ AE V + G
Sbjct: 834 ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 105/240 (43%)
Query: 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDE 105
++Y+ ++ LL R + + +M G Y+ +C + G +++ L D
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372
Query: 106 MGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165
M SG P Y L+ + LL MK+ S + T++ G+ +G+
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432
Query: 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNS 225
LD EM GC P+VV YT +I +++ A + M +G P++F YNS
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Query: 226 MIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+I G A + DEA + + EM G PN Y +S A + A A + ++ M E G
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG 552
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 130/323 (40%), Gaps = 40/323 (12%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M++ G A+T+ +L+ + E F + + P SY +++ +
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ ++ +M +EG P+++ YN+++ R G++++ LLDEM G P+ TY
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
++ K A L + MK G P +TTL+DG R +++ F KG
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG-TNKKG 761
Query: 181 CM---------------------------------------PDVVCYTVMITSYIAAGEL 201
C P+ V Y +MI G L
Sbjct: 762 CASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNL 821
Query: 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTL 261
E A++LF M +P V TY S++ G+ G+ E + E + G P+ ++Y+ +
Sbjct: 822 EAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVI 881
Query: 262 VSNLRNAGKLAEAHEVIRHMVEK 284
++ G +A ++ M K
Sbjct: 882 INAFLKEGMTTKALVLVDQMFAK 904
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Query: 74 EGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFS----PDFHTYNILLHVLGKGD 129
+G A +N ++ ++ GK + +L+ + F P+ TYNI++ L K
Sbjct: 760 KGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEG 819
Query: 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYT 189
AA L + M+ P+V+ +T+L++G + G FDE G PD + Y+
Sbjct: 820 NLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879
Query: 190 VMITSYIAAGELEKAQDLFDGMITKGQLPN-----VFTYNSMIRGFCMAGKFDEACTMMK 244
V+I +++ G KA L D M K + + + T +++ GF G+ + A +M+
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939
Query: 245 EM 246
M
Sbjct: 940 NM 941
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/195 (18%), Positives = 83/195 (42%), Gaps = 9/195 (4%)
Query: 48 YNAILHALLGIRQYKLIEWVYQQMSDEGY----APDILTYNIVMCAKYRLGKLDQFHRLL 103
+NA+++ + + +L V ++ D + P+ +TYNI++ + G L+ L
Sbjct: 769 FNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELF 828
Query: 104 DEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163
+M + P TY LL+ K + + + G +P + ++ +++ +
Sbjct: 829 HQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKE 888
Query: 164 GNLDACKYFFDEM-----ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218
G D+M + GC + +++ + GE+E A+ + + M+ +P
Sbjct: 889 GMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIP 948
Query: 219 NVFTYNSMIRGFCMA 233
+ T +I C++
Sbjct: 949 DSATVIELINESCIS 963
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 21/159 (13%)
Query: 144 VGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK 203
VG + F L DG G ++ + F +P + V++ + + L+
Sbjct: 145 VGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDL 204
Query: 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMAG---------------------KFDEACTM 242
D++ GM+ + + +V TY+ +I C AG D A +
Sbjct: 205 FWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKL 264
Query: 243 MKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
+ M +G P Y+ L+ L +L +A ++ M
Sbjct: 265 KESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEM 303
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 125/257 (48%)
Query: 29 VVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88
V+ F + ++ P + N ++H + Q +M G+ PD++T+ ++
Sbjct: 102 VISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLN 161
Query: 89 AKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDP 148
+++ L D++ GF P+ TY L+ L K A+ L N M G P
Sbjct: 162 GYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRP 221
Query: 149 SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLF 208
+V+ + L+ GL G + +M + P+V+ +T +I +++ G+L +A++L+
Sbjct: 222 NVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELY 281
Query: 209 DGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNA 268
+ MI P+VFTY S+I G CM G DEA M ME GC PN ++Y TL+ +
Sbjct: 282 NVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKS 341
Query: 269 GKLAEAHEVIRHMVEKG 285
++ + ++ M +KG
Sbjct: 342 KRVEDGMKIFYEMSQKG 358
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 1/249 (0%)
Query: 39 FNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQ 98
F R F +SY IL L Q+ ++ +M P I+ + ++ ++ + D
Sbjct: 43 FWIRAF-SSYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDV 101
Query: 99 FHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158
L ++M G P T NI++H + +P A L M ++GF+P ++ FT+L++
Sbjct: 102 VISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLN 161
Query: 159 GLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218
G ++ FD++ G P+VV YT +I L A +LF+ M T G P
Sbjct: 162 GYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRP 221
Query: 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVI 278
NV TYN+++ G C G++ +A ++++M R PN + + L+ GKL EA E+
Sbjct: 222 NVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELY 281
Query: 279 RHMVEKGKY 287
M++ Y
Sbjct: 282 NVMIQMSVY 290
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 121/252 (48%)
Query: 41 FRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100
F+P +Y ++ L R ++ QM G P+++TYN ++ +G+
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAA 243
Query: 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGL 160
LL +M + P+ T+ L+ K K + A L N M ++ P V + +L++GL
Sbjct: 244 WLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGL 303
Query: 161 SRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV 220
G LD + F M GC P+ V YT +I + + +E +F M KG + N
Sbjct: 304 CMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANT 363
Query: 221 FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRH 280
TY +I+G+C+ G+ D A + +M SR P+ YN L+ L GK+ +A + +
Sbjct: 364 ITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEY 423
Query: 281 MVEKGKYIHLVS 292
M ++ I++V+
Sbjct: 424 MRKREMDINIVT 435
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M NG T+N L+ C G G A ++ +K ++ P ++ A++ A +
Sbjct: 214 MGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRI---EPNVITFTALIDAFVK 270
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + + +Y M PD+ TY ++ G LD+ ++ M R+G P+
Sbjct: 271 VGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVI 330
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y L+H K + + + M + G + + +T L+ G G D + F++M+
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMS 390
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
++ PD+ Y V++ G++EKA +F+ M + N+ TY +I+G C GK +
Sbjct: 391 SRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE 450
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+A + + S+G PN + Y T++S G + EA + + M E G
Sbjct: 451 DAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDG 498
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%)
Query: 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193
AL+L M PS++ FT L+ +++ D F++M G P + +++
Sbjct: 67 ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMH 126
Query: 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
+ + +A M+ G P++ T+ S++ G+C + ++A + ++ G P
Sbjct: 127 CVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP 186
Query: 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
N + Y TL+ L L A E+ M G ++V+
Sbjct: 187 NVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVT 225
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 139/288 (48%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILI-CTC--GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI G T T+NI+I C C G+V AR + E K P +YN+++
Sbjct: 253 MIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM---KFRGLVPDTVTYNSMIDGFGK 309
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + +++M D PD++TYN ++ + GKL EM +G P+ +
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y+ L+ K A+ M+ VG P+ +T+L+D + GNL +EM
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 429
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
G +VV YT +I A +++A++LF M T G +PN+ +YN++I GF A D
Sbjct: 430 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMD 489
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
A ++ E++ RG P+ L+Y T + L + K+ A V+ M E G
Sbjct: 490 RALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 4/288 (1%)
Query: 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
GF F++LI ++G+ + ++ F K K F P S N +LH + + +
Sbjct: 191 GFGVFDALFSVLI----DLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDV 246
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
+ ++ M G P + TYNI++ + G ++ L +EM G PD TYN ++
Sbjct: 247 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
GK + + MK++ +P V+ + L++ + G L F+ EM G P+
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPN 366
Query: 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244
VV Y+ ++ ++ G +++A + M G +PN +TY S+I C G +A +
Sbjct: 367 VVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGN 426
Query: 245 EMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
EM G N + Y L+ L +A ++ EA E+ M G +L S
Sbjct: 427 EMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS 474
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 136/288 (47%)
Query: 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
G T+N +I G+VG V F + K P +YNA+++ + +
Sbjct: 292 GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124
Y++M G P++++Y+ ++ A + G + Q + +M R G P+ +TY L+
Sbjct: 352 LEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411
Query: 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184
K A L N M +VG + +V+ +T L+DGL A + + F +M G +P+
Sbjct: 412 NCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN 471
Query: 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244
+ Y +I ++ A +++A +L + + +G P++ Y + I G C K + A +M
Sbjct: 472 LASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMN 531
Query: 245 EMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
EM+ G N L+Y TL+ +G E ++ M E + +V+
Sbjct: 532 EMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVT 579
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 1/286 (0%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M++ G T+ LI + ++ E F K P SYNA++H + +
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ ++ G PD+L Y + L K++ +++EM G + Y
Sbjct: 488 MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTT 547
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK- 179
L+ K P L+LL+ MKE+ + +V+ F L+DGL + + +F+ ++N
Sbjct: 548 LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF 607
Query: 180 GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239
G + +T MI ++E A LF+ M+ KG +P+ Y S++ G G EA
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667
Query: 240 CTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ +M G + L Y +LV L + +L +A + M+ +G
Sbjct: 668 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEG 713
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 1/247 (0%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
+Y A++ L + K E ++ +M G P++ +YN ++ + +D+ LL+E+
Sbjct: 439 TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 498
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
G PD Y + L +K AA ++N MKE G + L +TTLMD ++GN
Sbjct: 499 KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNP 558
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK-GQLPNVFTYNS 225
+ DEM VV + V+I + KA D F+ + G N + +
Sbjct: 559 TEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTA 618
Query: 226 MIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
MI G C + + A T+ ++M +G P+ Y +L+ G + EA + M E G
Sbjct: 619 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 678
Query: 286 KYIHLVS 292
+ L++
Sbjct: 679 MKLDLLA 685
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 90/237 (37%), Gaps = 50/237 (21%)
Query: 106 MGRSGFSPDFHTYNILLH------------------VLGKGDKPL--------------- 132
M R+GF +Y I+ H VL K D +
Sbjct: 133 MTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGF 192
Query: 133 -----------------AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175
A+ + MK P L+ ++ G D K FF +
Sbjct: 193 GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKD 252
Query: 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235
M G P V Y +MI G++E A+ LF+ M +G +P+ TYNSMI GF G+
Sbjct: 253 MIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGR 312
Query: 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
D+ +EM+ C P+ + YN L++ GKL E R M G ++VS
Sbjct: 313 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 134/286 (46%), Gaps = 15/286 (5%)
Query: 7 PTTARTFNILI-------CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR 59
P T TFN LI V L ++V R + LF +Y +++ L
Sbjct: 183 PNTV-TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLF-------TYGTVVNGLCKRG 234
Query: 60 QYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYN 119
L + ++M D++ Y ++ A ++ L EM G P+ TYN
Sbjct: 235 DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294
Query: 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179
L+ L + A LL+ M E +P+V+ F+ L+D + G L + +DEM +
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354
Query: 180 GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239
PD+ Y+ +I + L++A+ +F+ MI+K PNV TYN++I+GFC A + +E
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414
Query: 240 CTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ +EM RG N + YNTL+ L AG A ++ + MV G
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 151/313 (48%), Gaps = 43/313 (13%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
++NILI C ++ LA V+ + +K + P + +++L+ ++ +
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMK---LGYEPDIVTLSSLLNGYCHGKRISEAVALV 173
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK- 127
QM Y P+ +T+N ++ + K + L+D M G PD TY +++ L K
Sbjct: 174 DQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKR 233
Query: 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC 187
GD LA L+LL M++ + V+ +TT++D L N++ F EM NKG P+VV
Sbjct: 234 GDIDLA-LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292
Query: 188 Y-----------------------------------TVMITSYIAAGELEKAQDLFDGMI 212
Y + +I +++ G+L +A+ L+D MI
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352
Query: 213 TKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLA 272
+ P++FTY+S+I GFCM + DEA M + M S+ C PN + YNTL+ A ++
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412
Query: 273 EAHEVIRHMVEKG 285
E E+ R M ++G
Sbjct: 413 EGMELFREMSQRG 425
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 140/290 (48%), Gaps = 10/290 (3%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M G T+N LI C G A +++ I+ K+ P +++A++ A
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI---NPNVVTFSALIDAF-- 335
Query: 58 IRQYKLIEW--VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF 115
+++ KL+E +Y +M PDI TY+ ++ +LD+ + + M P+
Sbjct: 336 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 395
Query: 116 HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175
TYN L+ K + + L M + G + + + TL+ GL +AG+ D + F +
Sbjct: 396 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 455
Query: 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235
M + G PD++ Y++++ G+LEKA +F+ + P+++TYN MI G C AGK
Sbjct: 456 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515
Query: 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
++ + + +G PN ++Y T++S G EA + R M E G
Sbjct: 516 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 565
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 133/265 (50%), Gaps = 3/265 (1%)
Query: 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGY 76
+C G++ LA ++++ K K+ Y I+ AL + ++ +M ++G
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKI---EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 286
Query: 77 APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALN 136
P+++TYN ++ G+ RLL +M +P+ T++ L+ K K + A
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346
Query: 137 LLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYI 196
L + M + DP + +++L++G LD K+ F+ M +K C P+VV Y +I +
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 406
Query: 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL 256
A +E+ +LF M +G + N TYN++I+G AG D A + K+M S G P+ +
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466
Query: 257 VYNTLVSNLRNAGKLAEAHEVIRHM 281
Y+ L+ L GKL +A V ++
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYL 491
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 138/285 (48%), Gaps = 8/285 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MIE TF+ LI G++ A K+ + IK + P +Y+++++
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI---DPDIFTYSSLINGFCM 372
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + +++ M + P+++TYN ++ + ++++ L EM + G + T
Sbjct: 373 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVT 432
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L+ L + A + M G P ++ ++ L+DGL + G L+ F+ +
Sbjct: 433 YNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 492
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
PD+ Y +MI AG++E DLF + KG PNV Y +MI GFC G +
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 552
Query: 238 EACTMMKEMESRGCNPNFLVYNTLV-SNLRNAGKLAEAHEVIRHM 281
EA + +EM+ G PN YNTL+ + LR+ K A A E+I+ M
Sbjct: 553 EADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA-ELIKEM 596
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 135/278 (48%), Gaps = 7/278 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI+ T++ LI C + A+ + E I F P +YN ++
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF---PNVVTYNTLIKGFCK 407
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ + ++++MS G + +TYN ++ ++ G D ++ +M G PD T
Sbjct: 408 AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIIT 467
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y+ILL L K K AL + ++++ +P + + +++G+ +AG ++ F ++
Sbjct: 468 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 527
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
KG P+V+ YT MI+ + G E+A LF M G LPN TYN++IR G
Sbjct: 528 LKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKA 587
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAH 275
+ ++KEM S G + ++V N+ + G+L +++
Sbjct: 588 ASAELIKEMRSCGFVGDASTI-SMVINMLHDGRLEKSY 624
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 113/234 (48%), Gaps = 1/234 (0%)
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
++ +M P I+ +N ++ A ++ K D L + M S D ++YNIL++
Sbjct: 67 LFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFC 126
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
+ + AL +L M ++G++P ++ ++L++G + D+M P+ V
Sbjct: 127 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTV 186
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
+ +I + +A L D M+ +G P++FTY +++ G C G D A +++K+M
Sbjct: 187 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246
Query: 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVSKFKRYKRC 300
E + ++Y T++ L N + +A + M KG ++V+ + RC
Sbjct: 247 EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT-YNSLIRC 299
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Query: 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154
KLD L EM +S P +N LL + K +K ++L M+ + + +
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
L++ R L +M G PD+V + ++ Y + +A L D M
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
PN T+N++I G + K EA ++ M +RGC P+ Y T+V+ L G + A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 275 HEVIRHMVEKGK 286
+++ M EKGK
Sbjct: 240 LSLLKKM-EKGK 250
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 41/177 (23%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILH---- 53
M+ +G P T++IL+ C G++ A V E KSK+ P +YN ++
Sbjct: 456 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM---EPDIYTYNIMIEGMCK 512
Query: 54 --------------ALLGIRQYKLI-----------------EWVYQQMSDEGYAPDILT 82
+L G++ +I + ++++M ++G P+ T
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 572
Query: 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLN 139
YN ++ A+ R G L+ EM GF D T ++++++L G + L +L+
Sbjct: 573 YNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 629
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 112/219 (51%)
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
Y +M D G PD++TYN ++ A + +D+ +L+ M ++G PD TYN +LH
Sbjct: 218 TYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 277
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
+P A+ L M+ G +P V+ ++ LMD L + G + FD M +G P++
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
Y ++ Y G L + L D M+ G P+ + ++ +I + GK D+A + +M
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397
Query: 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+G NPN + Y ++ L +G++ +A M+++G
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG 436
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 41/328 (12%)
Query: 1 MIENGFPTTARTFNIL---ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M +G T+++L +C G ARK+ + K L +P +Y +L
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL---KPEITTYGTLLQGYAT 348
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + M G PD ++I++CA + GK+DQ + +M + G +P+ T
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDP------SVLH------------------- 152
Y ++ +L K + A+ M + G P S++H
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 153 ----------FTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202
F +++D + G + + F+ M G P+V+ Y +I Y AG+++
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528
Query: 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262
+A L GM++ G PN TY+++I G+C + ++A + KEMES G +P+ + YN ++
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588
Query: 263 SNLRNAGKLAEAHEVIRHMVEKGKYIHL 290
L + A A E+ + E G I L
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIEL 616
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 117/243 (48%)
Query: 43 PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102
P +YN+I+ AL + V M G PD +TYN ++ G+ +
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162
L +M G PD TY++L+ L K + + A + + M + G P + + TL+ G +
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348
Query: 163 AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT 222
G L D M G PD ++++I +Y G++++A +F M +G PN T
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408
Query: 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282
Y ++I C +G+ ++A ++M G +P +VYN+L+ L K A E+I M+
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 283 EKG 285
++G
Sbjct: 469 DRG 471
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 109/202 (53%), Gaps = 5/202 (2%)
Query: 87 MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV-- 144
+CA R D +L M G P+ +YNILL L ++ AL LL+ M +
Sbjct: 132 LCADKRTS--DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRG 189
Query: 145 -GFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK 203
G P V+ +TT+++G + G+ D + EM ++G +PDVV Y +I + A ++K
Sbjct: 190 GGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDK 249
Query: 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263
A ++ + M+ G +P+ TYNS++ G+C +G+ EA +K+M S G P+ + Y+ L+
Sbjct: 250 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309
Query: 264 NLRNAGKLAEAHEVIRHMVEKG 285
L G+ EA ++ M ++G
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRG 331
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 8/291 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
+I+ GF A F L+ C A +V R + P SYN +L L
Sbjct: 113 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE--LGCIPNVFSYNILLKGLCD 170
Query: 58 I-RQYKLIEWVYQQMSDEG--YAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD 114
R + +E ++ D G PD+++Y V+ ++ G D+ + EM G PD
Sbjct: 171 ENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPD 230
Query: 115 FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFD 174
TYN ++ L K A+ +LN M + G P + + +++ G +G F
Sbjct: 231 VVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLK 290
Query: 175 EMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234
+M + G PDVV Y++++ G +A+ +FD M +G P + TY ++++G+ G
Sbjct: 291 KMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350
Query: 235 KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
E ++ M G +P+ V++ L+ GK+ +A V M ++G
Sbjct: 351 ALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 401
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 132/323 (40%), Gaps = 41/323 (12%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M + G A T+ +I C G V A E+ I L P YN+++H L
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL---SPGNIVYNSLIHGLCT 453
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+++ E + +M D G + + +N ++ + + G++ + +L + M R G P+ T
Sbjct: 454 CNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVIT 513
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L++ K A+ LL+ M VG P+ + ++TL++G + ++ F EM
Sbjct: 514 YNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEME 573
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC------ 231
+ G PD++ Y +++ A++L+ + G + TYN ++ G C
Sbjct: 574 SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTD 633
Query: 232 -----------------------------MAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262
G+ DEA + S G PN+ Y +
Sbjct: 634 DALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMA 693
Query: 263 SNLRNAGKLAEAHEVIRHMVEKG 285
N+ G L E ++ M + G
Sbjct: 694 ENIIGQGLLEELDQLFLSMEDNG 716
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 6/287 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G FN +I C G V + K+ E ++ +P +YN +++
Sbjct: 467 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR---IGVKPNVITYNTLINGYCL 523
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + M G P+ +TY+ ++ ++ +++ L EM SG SPD T
Sbjct: 524 AGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YNI+L L + + AA L + E G + + ++ GL + D F +
Sbjct: 584 YNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLC 643
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+ + +MI + + G ++A+DLF + G +PN +TY M G +
Sbjct: 644 LMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLE 703
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
E + ME GC + + N +V L G++ A + + EK
Sbjct: 704 ELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEK 750
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 51/119 (42%)
Query: 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQ 69
ARTFNI+I +VG + + F+ P +Y + ++G + ++ ++
Sbjct: 651 ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFL 710
Query: 70 QMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
M D G D N ++ + G++ + L + FS + T ++ + +L G
Sbjct: 711 SMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGG 769
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
+I+ G+ TF+ LI C G V A ++V+R ++ +P + NA+++ L
Sbjct: 133 IIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE---MGHKPTLITLNALVNGLCL 189
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + +M + G+ P+ +TY V+ + G+ LL +M D
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y+I++ L K A NL N M+ GF ++ +TTL+ G AG D +M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+ PDVV ++ +I ++ G+L +A++L MI +G P+ TY S+I GFC + D
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+A M+ M S+GC PN +N L++ A + + E+ R M +G
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 138/293 (47%), Gaps = 15/293 (5%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLA----RKVVERFIKSKLFNFRPFKNSYNAILH 53
M+E GF T+ ++ C G+ LA RK+ ER IK Y+ I+
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK-------YSIIID 255
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
L ++ +M +G+ DI+ Y ++ G+ D +LL +M + +P
Sbjct: 256 GLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITP 315
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
D ++ L+ K K A L M + G P + +T+L+DG + LD +
Sbjct: 316 DVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML 375
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
D M +KGC P++ + ++I Y A ++ +LF M +G + + TYN++I+GFC
Sbjct: 376 DLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 435
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
GK + A + +EM SR P+ + Y L+ L + G+ +A E+ +EK K
Sbjct: 436 GKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK-IEKSK 487
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 132/284 (46%), Gaps = 6/284 (2%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY 61
GF + LI C G K++ IK K+ P +++A++ + +
Sbjct: 277 GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI---TPDVVAFSALIDCFVKEGKL 333
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
+ E ++++M G +PD +TY ++ + +LD+ + +LD M G P+ T+NIL
Sbjct: 334 REAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNIL 393
Query: 122 LHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181
++ K + L L M G + + TL+ G G L+ K F EM ++
Sbjct: 394 INGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453
Query: 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACT 241
PD+V Y +++ GE EKA ++F+ + ++ YN +I G C A K D+A
Sbjct: 454 RPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 513
Query: 242 MMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ + +G P+ YN ++ L G L+EA + R M E G
Sbjct: 514 LFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 116/243 (47%)
Query: 42 RPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHR 101
RP ++ + + +QY L+ + +QM +G A ++ T +I++ R KL
Sbjct: 69 RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFS 128
Query: 102 LLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161
+ ++ + G+ PD T++ L++ L + AL L++ M E+G P+++ L++GL
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLC 188
Query: 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVF 221
G + D M G P+ V Y ++ +G+ A +L M + +
Sbjct: 189 LNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAV 248
Query: 222 TYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
Y+ +I G C G D A + EME +G + ++Y TL+ AG+ + +++R M
Sbjct: 249 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308
Query: 282 VEK 284
+++
Sbjct: 309 IKR 311
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 113/242 (46%), Gaps = 2/242 (0%)
Query: 45 KNSYNAILHA-LLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLL 103
K SY L + ++ I++ ++ ++Q+M+ P ++ ++ + R + D L
Sbjct: 37 KVSYRERLRSGIVDIKEDDAVD-LFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLC 95
Query: 104 DEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163
+M G + + +T +I+++ + K A + + + ++G++P + F+TL++GL
Sbjct: 96 KQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLE 155
Query: 164 GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTY 223
G + D M G P ++ ++ G++ A L D M+ G PN TY
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215
Query: 224 NSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283
+++ C +G+ A ++++ME R + + Y+ ++ L G L A + M
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275
Query: 284 KG 285
KG
Sbjct: 276 KG 277
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 9/204 (4%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY 61
G T+N LI C G++ +A+++ + + ++ RP SY +L L +
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV---RPDIVSYKILLDGLCDNGEP 473
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
+ +++++ DI YNI++ K+D L + G PD TYNI+
Sbjct: 474 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIM 533
Query: 122 LHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181
+ L K A L M+E G P+ + L+ G+ +E+ K C
Sbjct: 534 IGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI--KRC 591
Query: 182 MPDVVCYTV-MITSYIAAGELEKA 204
V TV M+ ++ G L+K+
Sbjct: 592 GFSVDASTVKMVVDMLSDGRLKKS 615
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 13 FNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQ 69
+NI+I C +V A + F L +P +YN ++ L + +++
Sbjct: 495 YNIIIHGMCNASKVDDAWDL---FCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFR 551
Query: 70 QMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129
+M ++G++P+ TYNI++ A G + +L++E+ R GFS D T +++ +L G
Sbjct: 552 KMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGR 611
Query: 130 KPLAALNLLN 139
+ L++L+
Sbjct: 612 LKKSFLDMLS 621
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 127 bits (320), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 4/241 (1%)
Query: 47 SYNAILHALLGIRQYKLIEW--VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLD 104
+YN ++ L R+ KL E V QM +G P+++TYN ++ +GKL + L
Sbjct: 305 TYNTLIGGL--CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCR 362
Query: 105 EMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164
++ G SP TYNIL+ + A ++ M+E G PS + +T L+D +R+
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422
Query: 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYN 224
N++ M G +PDV Y+V+I + G++ +A LF M+ K PN YN
Sbjct: 423 NMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYN 482
Query: 225 SMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
+MI G+C G A ++KEME + PN Y ++ L K EA ++ M++
Sbjct: 483 TMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDS 542
Query: 285 G 285
G
Sbjct: 543 G 543
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 144/321 (44%), Gaps = 39/321 (12%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALL--GI 58
+ E GF + LI C + G K + F + + +Y +++ L G+
Sbjct: 189 LTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGV 248
Query: 59 RQYKLIEWVYQQMSDEGYAPDILTYNIVM---CAKYRLG--------------------- 94
++ +Y++M ++G P++ TYN VM C R
Sbjct: 249 KKQGF--EMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 95 -----------KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKE 143
KL++ ++++D+M G +P+ TYN L+ K AL+L +K
Sbjct: 307 NTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 144 VGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK 203
G PS++ + L+ G R G+ EM +G P V YT++I ++ + +EK
Sbjct: 367 RGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEK 426
Query: 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263
A L M G +P+V TY+ +I GFC+ G+ +EA + K M + C PN ++YNT++
Sbjct: 427 AIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMIL 486
Query: 264 NLRNAGKLAEAHEVIRHMVEK 284
G A ++++ M EK
Sbjct: 487 GYCKEGSSYRALKLLKEMEEK 507
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 131/274 (47%)
Query: 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQM 71
+F ILI C E G K + I+ F F P Y ++ + + + ++ +M
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 72 SDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKP 131
G + TY +++ ++ G Q + ++M G P+ +TYN +++ L K +
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284
Query: 132 LAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVM 191
A + + M+E G +++ + TL+ GL R L+ D+M + G P+++ Y +
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344
Query: 192 ITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC 251
I + G+L KA L + ++G P++ TYN ++ GFC G A M+KEME RG
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGI 404
Query: 252 NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
P+ + Y L+ + + +A ++ M E G
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 1/245 (0%)
Query: 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMG 107
Y I+++ + + L + +M D G+ P +N ++ +Q+ +E
Sbjct: 97 YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE-N 155
Query: 108 RSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167
+S D +++ IL+ + + + +LL + E GF P+V+ +TTL+DG + G ++
Sbjct: 156 KSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIE 215
Query: 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMI 227
K F EM G + + YTV+I G ++ ++++ M G PN++TYN ++
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVM 275
Query: 228 RGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKY 287
C G+ +A + EM RG + N + YNTL+ L KL EA++V+ M G
Sbjct: 276 NQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGIN 335
Query: 288 IHLVS 292
+L++
Sbjct: 336 PNLIT 340
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 123/270 (45%), Gaps = 7/270 (2%)
Query: 1 MIENGFPTTARTFNILIC-TCGEVGL--ARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M E G T+N LI C E+ L A KVV++ +KS N P +YN ++ G
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ-MKSDGIN--PNLITYNTLIDGFCG 350
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + + + + G +P ++TYNI++ R G +++ EM G P T
Sbjct: 351 VGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVT 410
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y IL+ + D A+ L M+E+G P V ++ L+ G G ++ F M
Sbjct: 411 YTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMV 470
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
K C P+ V Y MI Y G +A L M K PNV +Y MI C K
Sbjct: 471 EKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSK 530
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRN 267
EA ++++M G +P+ + +L+S +N
Sbjct: 531 EAERLVEKMIDSGIDPSTSIL-SLISRAKN 559
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 1/252 (0%)
Query: 41 FRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100
F P N +N +L ++G + W + + D+ ++ I++ G++++
Sbjct: 125 FVPGSNCFNYLLTFVVGSSSFNQW-WSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSF 183
Query: 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGL 160
LL E+ GFSP+ Y L+ K + A +L M ++G + +T L++GL
Sbjct: 184 DLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGL 243
Query: 161 SRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV 220
+ G +++M G P++ Y ++ G + A +FD M +G N+
Sbjct: 244 FKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNI 303
Query: 221 FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRH 280
TYN++I G C K +EA ++ +M+S G NPN + YNTL+ GKL +A + R
Sbjct: 304 VTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRD 363
Query: 281 MVEKGKYIHLVS 292
+ +G LV+
Sbjct: 364 LKSRGLSPSLVT 375
>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
SV=2
Length = 971
Score = 127 bits (320), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 144/264 (54%), Gaps = 4/264 (1%)
Query: 21 GEVGLARKVVERFIKSKLFNFRPFKNSY-NAILHALLGIRQYKLIEWVYQQMSDEGY-AP 78
GE+ A +V+E + +K N+ PF N +A++ I + +L ++ D G P
Sbjct: 148 GEMDNAIEVLE-MMTNKNVNY-PFDNFVCSAVISGFCKIGKPELALGFFESAVDSGVLVP 205
Query: 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLL 138
+++TY ++ A +LGK+D+ L+ + GF D Y+ +H KG + AL
Sbjct: 206 NLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQD 265
Query: 139 NHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA 198
M E G + V+ ++ L+DGLS+ GN++ +M +G P+++ YT +I
Sbjct: 266 REMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKM 325
Query: 199 GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVY 258
G+LE+A LF+ +++ G + F Y ++I G C G + A +M+ +ME RG P+ L Y
Sbjct: 326 GKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTY 385
Query: 259 NTLVSNLRNAGKLAEAHEVIRHMV 282
NT+++ L AG+++EA EV + +V
Sbjct: 386 NTVINGLCMAGRVSEADEVSKGVV 409
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 105/215 (48%)
Query: 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLL 138
D++ Y I++ + G L + L G + + TYN L++ L + + AL L
Sbjct: 654 DVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLF 713
Query: 139 NHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA 198
+ ++ +G PS + + L+D L + G + D M +KG +P+++ Y ++ Y
Sbjct: 714 DSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKL 773
Query: 199 GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVY 258
G+ E A + + P+ FT +SMI+G+C G +EA ++ E + + + +F +
Sbjct: 774 GQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGF 833
Query: 259 NTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVSK 293
L+ G++ EA ++R M+ + L+++
Sbjct: 834 LFLIKGFCTKGRMEEARGLLREMLVSESVVKLINR 868
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 41/256 (16%)
Query: 70 QMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129
+M EG P+++TY ++ ++GKL++ L + + G D Y L+ + +
Sbjct: 302 KMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKG 361
Query: 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYT 189
A ++L M++ G PS+L + T+++GL AG + DE++ KG + DV+ Y+
Sbjct: 362 NLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEA----DEVS-KGVVGDVITYS 416
Query: 190 VMITSYIAAGELE-----------------------------------KAQDLFDGMITK 214
++ SYI ++ +A L+ M
Sbjct: 417 TLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEM 476
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
P+ TY +MI+G+C G+ +EA M E+ + + YN ++ L G L A
Sbjct: 477 DLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAA-VCYNRIIDALCKKGMLDTA 535
Query: 275 HEVIRHMVEKGKYIHL 290
EV+ + EKG Y+ +
Sbjct: 536 TEVLIELWEKGLYLDI 551
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 8/259 (3%)
Query: 41 FRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100
F P NS + L L ++++ I Y Q+ + + Y+IV A L + +
Sbjct: 22 FSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVSWAFLNLNRYEDAE 81
Query: 101 RLLD-EMGRSGFSPDFHTYNILLH--VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157
+ ++ + ++ P H + L+H + + D L L + ++ G PS L F +L+
Sbjct: 82 KFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNHGAFPSSLTFCSLI 141
Query: 158 DGLSRAGNLDACKYFFDEMANKGC---MPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
G +D + M NK + VC V I+ + G+ E A F+ +
Sbjct: 142 YRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAV-ISGFCKIGKPELALGFFESAVDS 200
Query: 215 GQL-PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAE 273
G L PN+ TY +++ C GK DE +++ +E G + + Y+ + G L +
Sbjct: 201 GVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVD 260
Query: 274 AHEVIRHMVEKGKYIHLVS 292
A R MVEKG +VS
Sbjct: 261 ALMQDREMVEKGMNRDVVS 279
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 12/211 (5%)
Query: 75 GYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAA 134
G + +TYN ++ + G L + RL D + G P TY IL+ L K L A
Sbjct: 685 GVTLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDA 744
Query: 135 LNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL-DACKYFFDEMANKGCMPDVVCYTVMIT 193
LL+ M G P+++ + +++DG + G DA + +M + PD + MI
Sbjct: 745 EKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGR-VTPDAFTVSSMIK 803
Query: 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253
Y G++E+A +F K + F + +I+GFC G+ +EA +++EM
Sbjct: 804 GYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREM------- 856
Query: 254 NFLVYNTLVSNL-RNAGKLAEAHEVIRHMVE 283
LV ++V + R +LAE+ + +VE
Sbjct: 857 --LVSESVVKLINRVDAELAESESIRGFLVE 885
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 97/241 (40%), Gaps = 42/241 (17%)
Query: 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL--GKGDKPL-------- 132
YN ++ A + G LD +L E+ G D HT LLH + GDK +
Sbjct: 519 YNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLE 578
Query: 133 -------------------------AALNLLNHMKEVGFD---PSVLHFTTLMDGLSRAG 164
AA+ + M+ G PS + TL+D L
Sbjct: 579 QLNSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPSTI-LKTLVDNLR--- 634
Query: 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYN 224
+LDA + DV+ YT++I G L KA +L ++G N TYN
Sbjct: 635 SLDAYLLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYN 694
Query: 225 SMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
S+I G C G EA + +E+ G P+ + Y L+ NL G +A +++ MV K
Sbjct: 695 SLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSK 754
Query: 285 G 285
G
Sbjct: 755 G 755
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/298 (18%), Positives = 110/298 (36%), Gaps = 58/298 (19%)
Query: 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLI 64
G T+N LI + G + + F + P + +Y ++ L +
Sbjct: 685 GVTLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDA 744
Query: 65 EWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDE--MGRSGFSPDFHTYNILL 122
E + M +G P+I+ YN ++ +LG+ + R++ MGR +PD T
Sbjct: 745 EKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGR--VTPDAFT----- 797
Query: 123 HVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM 182
++++ G + G+++ F E +K
Sbjct: 798 ------------------------------VSSMIKGYCKKGDMEEALSVFTEFKDKNIS 827
Query: 183 PDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV-------FTYNSMIRGF----C 231
D + +I + G +E+A+ L M+ + + + IRGF C
Sbjct: 828 ADFFGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKLINRVDAELAESESIRGFLVELC 887
Query: 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIH 289
G+ +A ++ E+ S +Y + NL + +L ++V ++K Y+H
Sbjct: 888 EQGRVPQAIKILDEISST-------IYPS-GKNLGSYQRLQFLNDVNEEEIKKKDYVH 937
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 127 bits (319), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 113/236 (47%)
Query: 39 FNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQ 98
F F P YN +++ L R V+ M +G D +TYN ++ G+
Sbjct: 178 FGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTD 237
Query: 99 FHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158
RLL +M + P+ + L+ K L A NL M P+V + +L++
Sbjct: 238 AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN 297
Query: 159 GLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218
G G L KY FD M +KGC PDVV Y +IT + + +E LF M +G +
Sbjct: 298 GFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVG 357
Query: 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
+ FTYN++I G+C AGK + A + M G +P+ + YN L+ L N GK+ +A
Sbjct: 358 DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKA 413
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 6/284 (2%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
+F ILI C C + LA ++ + +K FRP + ++L+ +++ +
Sbjct: 116 SFTILIHCFCRCSRLSLALALLGKMMK---LGFRPSIVTLGSLLNGFCQGNRFQEAVSLV 172
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
M G+ P+++ YN V+ + L+ + M + G D TYN L+ L
Sbjct: 173 DSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNS 232
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
+ A LL M + DP+V+ FT L+D + GNL + + EM + +P+V Y
Sbjct: 233 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 292
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
+I + G L A+ +FD M++KG P+V TYN++I GFC + + ++ + EM
Sbjct: 293 NSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY 352
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+G + YNTL+ AGKL A +V MV+ G +V+
Sbjct: 353 QGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVT 396
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 18/294 (6%)
Query: 1 MIENGFPTTARTFNILICTCGEVG-------LARKVVERFIKSKLFNFRPFKNSYNAILH 53
M + G A T+N LI G L R +V+R I + F +++
Sbjct: 210 MEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTF----- 264
Query: 54 ALLGIRQYKLIEW--VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF 111
+++ L+E +Y++M P++ TYN ++ G L + D M G
Sbjct: 265 ----VKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGC 320
Query: 112 SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKY 171
PD TYN L+ K + + L M G + TL+ G +AG L+ +
Sbjct: 321 FPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQK 380
Query: 172 FFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231
F+ M + G PD+V Y +++ G++EKA + + + ++ TYN +I+G C
Sbjct: 381 VFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLC 440
Query: 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
K EA + + + +G P+ + Y T++S L G EA ++ R M E G
Sbjct: 441 RTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 130/271 (47%), Gaps = 8/271 (2%)
Query: 37 KLFNFRPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94
++ RP + + +L + + ++ ++ ++Y +M + G + D+ ++ I++ R
Sbjct: 69 EMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCS 128
Query: 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154
+L LL +M + GF P T LL+ +G++ A++L++ M GF P+V+ +
Sbjct: 129 RLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYN 188
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
T+++GL + +L+ F M KG D V Y +I+ +G A L M+ +
Sbjct: 189 TVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKR 248
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
PNV + ++I F G EA + KEM R PN YN+L++ G L +A
Sbjct: 249 KIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDA 308
Query: 275 HEVIRHMVEKG------KYIHLVSKFKRYKR 299
+ MV KG Y L++ F + KR
Sbjct: 309 KYMFDLMVSKGCFPDVVTYNTLITGFCKSKR 339
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 108/235 (45%), Gaps = 7/235 (2%)
Query: 25 LARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84
L ++++ R + +F + N + +H LG +Y ++ M +G PD++TYN
Sbjct: 276 LYKEMIRRSVVPNVFTYNSLINGF--CIHGCLGDAKY-----MFDLMVSKGCFPDVVTYN 328
Query: 85 IVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV 144
++ + +++ +L EM G D TYN L+H + K A + N M +
Sbjct: 329 TLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDC 388
Query: 145 GFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKA 204
G P ++ + L+D L G ++ +++ D++ Y ++I +L++A
Sbjct: 389 GVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEA 448
Query: 205 QDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN 259
LF + KG P+ Y +MI G C G EA + + M+ G P+ +Y+
Sbjct: 449 WCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 503
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 6/231 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI T+N LI C G +G A+ + + + F P +YN ++
Sbjct: 280 MIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCF---PDVVTYNTLITGFCK 336
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ + ++ +M+ +G D TYN ++ + GKL+ ++ + M G SPD T
Sbjct: 337 SKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVT 396
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YNILL L K AL ++ +++ D ++ + ++ GL R L F +
Sbjct: 397 YNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLT 456
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIR 228
KG PD + Y MI+ G +A L M G +P+ Y+ +R
Sbjct: 457 RKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLR 507
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%)
Query: 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154
K D L EM +S P + +L V+ K +K + L + M+ +G + FT
Sbjct: 59 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118
Query: 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214
L+ R L +M G P +V ++ + ++A L D M
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178
Query: 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
G +PNV YN++I G C + A + ME +G + + YNTL+S L N+G+ +A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238
Query: 275 HEVIRHMVEK 284
++R MV++
Sbjct: 239 ARLLRDMVKR 248
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 141/288 (48%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G+ + T + L+ C + A +V++ ++ +RP ++ ++H L
Sbjct: 71 MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE---MGYRPDTITFTTLIHGLFL 127
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + +M G P+++TY +V+ + G +D LL++M + D
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
+N ++ L K ALNL M+ G P+V+ +++L+ L G +M
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
K P++V + +I +++ G+ +A+ L D MI + P++FTYNS+I GFCM + D
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+A M + M S+ C P+ YNTL+ + ++ + E+ R M +G
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 355
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 6/288 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M G T++ LI C+ G A +++ I+ K+ P ++NA++ A +
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI---NPNLVTFNALIDAFVK 267
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ E ++ M PDI TYN ++ +LD+ ++ + M PD T
Sbjct: 268 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDT 327
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L+ K + L M G + +TTL+ GL G+ D + F +M
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+ G PD++ Y++++ G+LEKA ++FD M +++ Y +MI G C AGK D
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 447
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ + + +G PN + YNT++S L + L EA+ +++ M E G
Sbjct: 448 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 495
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 134/253 (52%), Gaps = 2/253 (0%)
Query: 42 RPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99
RP + +N +L A+ ++++ L+ + ++M G + ++ TYNI++ R ++
Sbjct: 5 RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 64
Query: 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159
LL +M + G+ P T + LL+ G + A+ L++ M E+G+ P + FTTL+ G
Sbjct: 65 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 124
Query: 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219
L D M +GC P++V Y V++ G+++ A +L + M +
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIR 279
V +N++I C D+A + KEME++G PN + Y++L+S L + G+ ++A +++
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244
Query: 280 HMVEKGKYIHLVS 292
M+EK +LV+
Sbjct: 245 DMIEKKINPNLVT 257
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 6/284 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ G T+ +++ C G++ LA ++ + +K+ +N I+ +L
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI---EADVVIFNTIIDSLCK 197
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
R ++++M +G P+++TY+ ++ G+ +LL +M +P+ T
Sbjct: 198 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
+N L+ K K + A L + M + DP + + +L++G LD K F+ M
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 317
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+K C PD+ Y +I + + +E +LF M +G + + TY ++I+G G D
Sbjct: 318 SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 377
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
A + K+M S G P+ + Y+ L+ L N GKL +A EV +M
Sbjct: 378 NAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 14/292 (4%)
Query: 1 MIENGFPTTARTFNILI-------CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILH 53
M+E G+ TF LI V L ++V+R + L +Y +++
Sbjct: 106 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV-------TYGVVVN 158
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
L L + +M D++ +N ++ + + +D L EM G P
Sbjct: 159 GLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP 218
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
+ TY+ L+ L + A LL+ M E +P+++ F L+D + G +
Sbjct: 219 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLH 278
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
D+M + PD+ Y +I + L+KA+ +F+ M++K P++ TYN++I+GFC +
Sbjct: 279 DDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKS 338
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ ++ + +EM RG + + Y TL+ L + G A +V + MV G
Sbjct: 339 KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 120/239 (50%)
Query: 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106
+YN +++ Q L + +M GY P I+T + ++ ++ L+D+M
Sbjct: 47 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 106
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
G+ PD T+ L+H L +K A+ L++ M + G P+++ + +++GL + G++
Sbjct: 107 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 166
Query: 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226
D ++M DVV + +I S ++ A +LF M TKG PNV TY+S+
Sbjct: 167 DLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 226
Query: 227 IRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
I C G++ +A ++ +M + NPN + +N L+ GK EA ++ M+++
Sbjct: 227 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 6/251 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI+ T+N LI C + A+++ E + F P ++YN ++
Sbjct: 281 MIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF---PDLDTYNTLIKGFCK 337
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
++ + ++++MS G D +TY ++ + G D ++ +M G PD T
Sbjct: 338 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMT 397
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
Y+ILL L K AL + ++M++ + +TT+++G+ +AG +D F ++
Sbjct: 398 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS 457
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
KG P+VV Y MI+ + L++A L M G LP+ TYN++IR G
Sbjct: 458 LKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKA 517
Query: 238 EACTMMKEMES 248
+ +++EM S
Sbjct: 518 ASAELIREMRS 528
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 21/186 (11%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ +G P T++IL+ C G++ A +V + KS++ + Y ++ +
Sbjct: 386 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI---KLDIYIYTTMIEGMCK 442
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIV---MCAKYRLGKLDQFHRLLDEMGRSGFSPD 114
+ ++ +S +G P+++TYN + +C+K RL L + + LL +M G PD
Sbjct: 443 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK-RL--LQEAYALLKKMKEDGPLPD 499
Query: 115 FHTYNILLHV-LGKGDKPLAALNLLNHMKEVGF--DPSVLHFTTLMDGLSRAGNLDACKY 171
TYN L+ L GDK A+ L+ M+ F D S + L+ + G LD K
Sbjct: 500 SGTYNTLIRAHLRDGDKA-ASAELIREMRSCRFVGDASTI---GLVANMLHDGRLD--KS 553
Query: 172 FFDEMA 177
F D ++
Sbjct: 554 FLDMLS 559
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 211 MITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK 270
M+ LP++F +N ++ KFD ++ ++M+ G + N YN L++ +
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 271 LAEAHEVIRHMVEKG 285
++ A ++ M++ G
Sbjct: 61 ISLALALLGKMMKLG 75
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 129/277 (46%), Gaps = 7/277 (2%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
T N+L+ C ++ A KV++ L P +Y IL + + + V
Sbjct: 193 TCNLLVKALCKKNDIESAYKVLDEIPSMGLV---PNLVTYTTILGGYVARGDMESAKRVL 249
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
++M D G+ PD TY ++M +LG+ + ++D+M ++ P+ TY +++ L K
Sbjct: 250 EEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKE 309
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
K A N+ + M E F P ++D L +D + +M CMPD
Sbjct: 310 KKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALL 369
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
+ +I G + +A+ LFD KG +P++ TYN++I G C G+ EA + +M
Sbjct: 370 STLIHWLCKEGRVTEARKLFDE-FEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYE 428
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
R C PN YN L+ L G + E V+ M+E G
Sbjct: 429 RKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIG 465
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 5/244 (2%)
Query: 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN--IVMCAKYRL-GKLDQFHRL 102
++Y++IL L R + +E + + + Y P N I + Y L G+ + R+
Sbjct: 84 DTYHSILFKLSRARAFDPVESLMADLRN-SYPPIKCGENLFIDLLRNYGLAGRYESSMRI 142
Query: 103 LDEMGRSGFSPDFHTYNILLHVLGKGDK-PLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161
+ G + N LL+VL + + L N + G P++ L+ L
Sbjct: 143 FLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALC 202
Query: 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVF 221
+ ++++ DE+ + G +P++V YT ++ Y+A G++E A+ + + M+ +G P+
Sbjct: 203 KKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAT 262
Query: 222 TYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281
TY ++ G+C G+F EA T+M +ME PN + Y ++ L K EA + M
Sbjct: 263 TYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEM 322
Query: 282 VEKG 285
+E+
Sbjct: 323 LERS 326
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 1/218 (0%)
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS-GFSPDFHTYNILLHVL 125
++ ++ D G + + N ++ + + D H + S G +P+ T N+L+ L
Sbjct: 142 IFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKAL 201
Query: 126 GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV 185
K + +A +L+ + +G P+++ +TT++ G G++++ K +EM ++G PD
Sbjct: 202 CKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDA 261
Query: 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245
YTV++ Y G +A + D M PN TY MIR C K EA M E
Sbjct: 262 TTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDE 321
Query: 246 MESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283
M R P+ + ++ L K+ EA + R M++
Sbjct: 322 MLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLK 359
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 108/249 (43%), Gaps = 10/249 (4%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M +N T+ ++I C + G AR + + ++ +F P + ++ AL
Sbjct: 287 MEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLER---SFMPDSSLCCKVIDALCE 343
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ ++++M PD + ++ + G++ + +L DE + G P T
Sbjct: 344 DHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK-GSIPSLLT 402
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
YN L+ + + + A L + M E P+ + L++GLS+ GN+ +EM
Sbjct: 403 YNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEML 462
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
GC P+ + ++ G+ E A + + G++ + ++ ++ F AG+ D
Sbjct: 463 EIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKV-DKESWELFLKKF--AGELD 519
Query: 238 EACTMMKEM 246
+ +KE+
Sbjct: 520 KGVLPLKEL 528
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 7/183 (3%)
Query: 110 GFSPDFHTYNILLHVLGKGD--KPLAAL--NLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165
GF+ ++ TY+ +L L + P+ +L +L N + ++ F L+ AG
Sbjct: 78 GFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENL--FIDLLRNYGLAGR 135
Query: 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLF-DGMITKGQLPNVFTYN 224
++ F + + G V ++ I + +F + + G PN+FT N
Sbjct: 136 YESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCN 195
Query: 225 SMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284
+++ C + A ++ E+ S G PN + Y T++ G + A V+ M+++
Sbjct: 196 LLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDR 255
Query: 285 GKY 287
G Y
Sbjct: 256 GWY 258
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 143/322 (44%), Gaps = 41/322 (12%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
+I+ G T+N+ I C GE+ A ++V I+ +P +YN +++ L
Sbjct: 242 VIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQ---GPKPDVITYNNLIYGLCK 298
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+++ E +M +EG PD TYN ++ + G + R++ + +GF PD T
Sbjct: 299 NSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFT 358
Query: 118 YNILL-----------------HVLGKGDKP------------------LAALNLLNHMK 142
Y L+ LGKG KP L A L N M
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMS 418
Query: 143 EVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202
E G P V F L++GL + G + M +KG PD+ + ++I Y ++E
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKME 478
Query: 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262
A ++ D M+ G P+V+TYNS++ G C KF++ K M +GC PN +N L+
Sbjct: 479 NALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILL 538
Query: 263 SNLRNAGKLAEAHEVIRHMVEK 284
+L KL EA ++ M K
Sbjct: 539 ESLCRYRKLDEALGLLEEMKNK 560
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 8/290 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFN-FRPFKNSYNAILHALL 56
M+ G + T+N LI C G V LA ER + +FN F P + +Y +++ L
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGGMVQLA----ERIVGDAVFNGFVPDQFTYRSLIDGLC 367
Query: 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH 116
+ ++ + +G P+++ YN ++ G + + +L +EM G P+
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQ 427
Query: 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM 176
T+NIL++ L K A L+ M G+ P + F L+ G S ++ D M
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487
Query: 177 ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236
+ G PDV Y ++ + E + + M+ KG PN+FT+N ++ C K
Sbjct: 488 LDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKL 547
Query: 237 DEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
DEA +++EM+++ NP+ + + TL+ G L A+ + R M E K
Sbjct: 548 DEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYK 597
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 111/219 (50%)
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
++ +M G + + T+N ++ + G + + +LLD++ + G P+ TYN+ + L
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLC 262
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
+ + A+ ++ + E G P V+ + L+ GL + + + +M N+G PD
Sbjct: 263 QRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY 322
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246
Y +I Y G ++ A+ + + G +P+ FTY S+I G C G+ + A + E
Sbjct: 323 TYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEA 382
Query: 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+G PN ++YNTL+ L N G + EA ++ M EKG
Sbjct: 383 LGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 127/289 (43%), Gaps = 7/289 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M E G +TFNIL+ C G V A +V+ I F P ++N ++H
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYF---PDIFTFNILIHGYST 473
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ + + M D G PD+ TYN ++ + K + M G +P+ T
Sbjct: 474 QLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFT 533
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
+NILL L + K AL LL MK +P + F TL+DG + G+LD F +M
Sbjct: 534 FNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKME 593
Query: 178 NK-GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236
Y ++I ++ + A+ LF M+ + P+ +TY M+ GFC G
Sbjct: 594 EAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNV 653
Query: 237 DEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ + EM G P+ +++ L ++ EA +I MV+KG
Sbjct: 654 NLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKG 702
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 118/265 (44%)
Query: 21 GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI 80
G G ++ V F + ++ P SYNAI+ L+ + VY +M D G PD+
Sbjct: 87 GRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDV 146
Query: 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNH 140
++ I M + + + RLL+ M G + Y ++ + + L
Sbjct: 147 YSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGK 206
Query: 141 MKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE 200
M G + F L+ L + G++ C+ D++ +G +P++ Y + I GE
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGE 266
Query: 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNT 260
L+ A + +I +G P+V TYN++I G C KF EA + +M + G P+ YNT
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNT 326
Query: 261 LVSNLRNAGKLAEAHEVIRHMVEKG 285
L++ G + A ++ V G
Sbjct: 327 LIAGYCKGGMVQLAERIVGDAVFNG 351
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 113/242 (46%)
Query: 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDE 105
+++N +L L K E + ++ G P++ TYN+ + + G+LD R++
Sbjct: 217 STFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276
Query: 106 MGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165
+ G PD TYN L++ L K K A L M G +P + TL+ G + G
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM 336
Query: 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNS 225
+ + + G +PD Y +I GE +A LF+ + KG PNV YN+
Sbjct: 337 VQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNT 396
Query: 226 MIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+I+G G EA + EM +G P +N LV+ L G +++A +++ M+ KG
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456
Query: 286 KY 287
+
Sbjct: 457 YF 458
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 5/216 (2%)
Query: 85 IVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKE- 143
++ C K + L+ F+ + E+G F TY ++ LG K A +L M+E
Sbjct: 13 VIKCQKDPMKALEMFNSMRKEVG---FKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMREN 69
Query: 144 VGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK 203
VG + M R G + F+ M C P V Y +++ + +G ++
Sbjct: 70 VGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQ 129
Query: 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263
A ++ M +G P+V+++ ++ FC + A ++ M S+GC N + Y T+V
Sbjct: 130 AHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVG 189
Query: 264 NLRNAGKLAEAHEVIRHMVEKGKYIHLVSKFKRYKR 299
AE +E+ M+ G + L S F + R
Sbjct: 190 GFYEENFKAEGYELFGKMLASGVSLCL-STFNKLLR 224
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 106/257 (41%), Gaps = 42/257 (16%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
MI G+ TFNILI T ++ A ++++ + + + P +YN++L+ L
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGV---DPDVYTYNSLLNGLCK 508
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD--- 114
+++ + Y+ M ++G AP++ T+NI++ + R KLD+ LL+EM +PD
Sbjct: 509 TSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVT 568
Query: 115 ---------------------------------FHTYNILLHVLGKGDKPLAALNLLNHM 141
TYNI++H + A L M
Sbjct: 569 FGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEM 628
Query: 142 KEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGEL 201
+ P + ++DG + GN++ F EM G +P + +I +
Sbjct: 629 VDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRV 688
Query: 202 EKAQDLFDGMITKGQLP 218
+A + M+ KG +P
Sbjct: 689 YEAAGIIHRMVQKGLVP 705
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 10 ARTFNILI---CTCGEVG----LARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYK 62
A TF LI C G++ L RK+ E + K+ + P +YN I+HA
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEEAY---KVSSSTP---TYNIIIHAFTEKLNVT 619
Query: 63 LIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL 122
+ E ++Q+M D PD TY +++ + G ++ ++ L EM +GF P T ++
Sbjct: 620 MAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVI 679
Query: 123 HVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM 182
+ L D+ A +++ M + G P ++ +D A A K +++ K C+
Sbjct: 680 NCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTICDVDKKEVA----APKLVLEDLLKKSCI 735
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 6/277 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M++ GF + TF L+ C A +V++ + + P YN I+ +L
Sbjct: 140 MMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVG---LGYEPNVVIYNTIIDSLCE 196
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
Q V + M G PD++TYN ++ + G R+L +M R G SPD T
Sbjct: 197 KGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVIT 256
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177
++ L+ V GK + L A N M + +P+++ + +L++GL G LD K + +
Sbjct: 257 FSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLV 316
Query: 178 NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237
+KG P+ V Y +I Y A ++ + M G + FTYN++ +G+C AGKF
Sbjct: 317 SKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFS 376
Query: 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274
A ++ M S G +P+ +N L+ L + GK+ +A
Sbjct: 377 AAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKA 413
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 135/277 (48%), Gaps = 6/277 (2%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
+F LI C C + LA + + +K F P ++ ++++ + ++ +
Sbjct: 116 SFTTLIDCFCRCARLSLALSCLGKMMK---LGFEPSIVTFGSLVNGFCHVNRFYEAMSLV 172
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
Q+ GY P+++ YN ++ + G+++ +L M + G PD TYN L+ L
Sbjct: 173 DQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHS 232
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
+ +L+ M +G P V+ F+ L+D + G L K ++EM + P++V Y
Sbjct: 233 GTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTY 292
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248
+I G L++A+ + + +++KG PN TYN++I G+C A + D+ ++ M
Sbjct: 293 NSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSR 352
Query: 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
G + + YNTL AGK + A +V+ MV G
Sbjct: 353 DGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCG 389
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 125/250 (50%)
Query: 43 PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102
P ++ +L A+ + +Y+ + +++ + G + D+ ++ ++ R +L
Sbjct: 77 PSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSC 136
Query: 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162
L +M + GF P T+ L++ ++ A++L++ + +G++P+V+ + T++D L
Sbjct: 137 LGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 196
Query: 163 AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT 222
G ++ M G PDVV Y +IT +G + + M+ G P+V T
Sbjct: 197 KGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVIT 256
Query: 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282
++++I + G+ EA EM R NPN + YN+L++ L G L EA +V+ +V
Sbjct: 257 FSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLV 316
Query: 283 EKGKYIHLVS 292
KG + + V+
Sbjct: 317 SKGFFPNAVT 326
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 135/289 (46%), Gaps = 7/289 (2%)
Query: 11 RTFNILICTCGEVGLARKVVER-----FIKSKLFNFRPF--KNSYNAILHALLGIRQYKL 63
R+ I+I + L R ++E+ + ++ N R F ++ Y L + L ++
Sbjct: 3 RSIVIVIALTAKGFLHRHLLEKGNLVTALSLRICNSRAFSGRSDYRERLRSGLHSIKFND 62
Query: 64 IEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123
++ M++ P I+ ++ ++ A +L K + L + G S D +++ L+
Sbjct: 63 ALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLID 122
Query: 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP 183
+ + AL+ L M ++GF+PS++ F +L++G D++ G P
Sbjct: 123 CFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEP 182
Query: 184 DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMM 243
+VV Y +I S G++ A D+ M G P+V TYNS+I +G + + ++
Sbjct: 183 NVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARIL 242
Query: 244 KEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
+M G +P+ + ++ L+ G+L EA + M+++ ++V+
Sbjct: 243 SDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVT 291
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 110/247 (44%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M+ G TF+ LI G+ G + +++ + + P +YN++++ L
Sbjct: 245 MMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGL 304
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ V + +G+ P+ +TYN ++ + ++D ++L M R G D TYN
Sbjct: 305 LDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNT 364
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L + K AA +L M G P + F L+DGL G + +++
Sbjct: 365 LYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSK 424
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
+ ++ Y ++I A ++E A LF + KG P+V TY +M+ G + EA
Sbjct: 425 TVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAH 484
Query: 241 TMMKEME 247
+ ++M+
Sbjct: 485 ELYRKMQ 491
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 15/293 (5%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLA----RKVVERFIKSKLFNFRPFKNSYNAILH 53
M+E G A T+ ++ C G+ LA RK+ ER IK Y+ I+
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAV-------KYSIIID 271
Query: 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP 113
L ++ +M +G +I+TYNI++ G+ D +LL +M + +P
Sbjct: 272 GLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINP 331
Query: 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173
+ T+++L+ K K A L M G P + +T+L+DG + +LD
Sbjct: 332 NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 391
Query: 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233
D M +KGC P++ + ++I Y A ++ +LF M +G + + TYN++I+GFC
Sbjct: 392 DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 451
Query: 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
GK + A + +EM SR PN + Y L+ L + G+ +A E+ +EK K
Sbjct: 452 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEK-IEKSK 503
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 152/320 (47%), Gaps = 43/320 (13%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHAL-LGIRQ 60
G T +I+I C C ++ LA + + IK + P +++ +++ L L R
Sbjct: 118 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIK---LGYEPNTITFSTLINGLCLEGRV 174
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ +E V +M + G+ PD++T N ++ GK + L+D+M G P+ TY
Sbjct: 175 SEALELV-DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP 233
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
+L+V+ K + A+ LL M+E + ++ ++DGL + G+LD F+EM KG
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293
Query: 181 CM-----------------------------------PDVVCYTVMITSYIAAGELEKAQ 205
P+VV ++V+I S++ G+L +A+
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353
Query: 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265
+L MI +G P+ TY S+I GFC D+A M+ M S+GC+PN +N L++
Sbjct: 354 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 413
Query: 266 RNAGKLAEAHEVIRHMVEKG 285
A ++ + E+ R M +G
Sbjct: 414 CKANRIDDGLELFRKMSLRG 433
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 135/284 (47%), Gaps = 6/284 (2%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY 61
G T T+NILI C G K++ IK K+ P +++ ++ + + +
Sbjct: 293 GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI---NPNVVTFSVLIDSFVKEGKL 349
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
+ E ++++M G APD +TY ++ + LD+ ++++D M G P+ T+NIL
Sbjct: 350 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 409
Query: 122 LHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181
++ K ++ L L M G + + TL+ G G L+ K F EM ++
Sbjct: 410 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 469
Query: 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACT 241
P++V Y +++ GE EKA ++F+ + ++ YN +I G C A K D+A
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 529
Query: 242 MMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+ + +G P YN ++ L G L+EA + R M E G
Sbjct: 530 LFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 106/253 (41%), Gaps = 35/253 (13%)
Query: 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126
+++ M P ++ ++ + A + + D L +M G + + +T +I+++
Sbjct: 75 LFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFC 134
Query: 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV 186
+ K A + + + ++G++P+ + F+TL++GL G + D M G PD++
Sbjct: 135 RCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLI 194
Query: 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNS--------------------- 225
++ +G+ +A L D M+ G PN TY
Sbjct: 195 TINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM 254
Query: 226 --------------MIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKL 271
+I G C G D A + EME +G N + YN L+ NAG+
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRW 314
Query: 272 AEAHEVIRHMVEK 284
+ +++R M+++
Sbjct: 315 DDGAKLLRDMIKR 327
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 13 FNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQ 69
+NI+I C +V A + F L +P +YN ++ L E +++
Sbjct: 511 YNIIIHGMCNASKVDDAWDL---FCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFR 567
Query: 70 QMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129
+M ++G+APD TYNI++ A G + +L++E+ R GFS D T +++ +L G
Sbjct: 568 KMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGR 627
Query: 130 KPLAALNLLN 139
+ L++L+
Sbjct: 628 LKKSFLDMLS 637
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 15/207 (7%)
Query: 5 GFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY 61
G T+N LI C G++ +A+++ + + K+ P +Y +L L +
Sbjct: 433 GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV---PPNIVTYKILLDGLCDNGES 489
Query: 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121
+ +++++ DI YNI++ K+D L + G P TYNI+
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549
Query: 122 LHVLGKGDKPLAALNLL-NHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKY--FFDEMAN 178
+ L K PL+ LL M+E G P + L+ + G+ DA K +E+
Sbjct: 550 IGGLCK-KGPLSEAELLFRKMEEDGHAPDGWTYNILIR--AHLGDGDATKSVKLIEEL-- 604
Query: 179 KGCMPDVVCYTV-MITSYIAAGELEKA 204
K C V T+ M+ ++ G L+K+
Sbjct: 605 KRCGFSVDASTIKMVIDMLSDGRLKKS 631
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 35/126 (27%)
Query: 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC---------- 251
+ A DLF MI LP V ++ + ++D + K+ME +G
Sbjct: 70 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 129
Query: 252 -------------------------NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
PN + ++TL++ L G+++EA E++ MVE G
Sbjct: 130 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 189
Query: 287 YIHLVS 292
L++
Sbjct: 190 KPDLIT 195
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 144/283 (50%), Gaps = 5/283 (1%)
Query: 13 FNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQ 69
FN LI T G + A+ V+ + S + P +YN++++ L V
Sbjct: 356 FNTLIHGFVTHGRLDDAKAVLSDMVTS--YGIVPDVCTYNSLIYGYWKEGLVGLALEVLH 413
Query: 70 QMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129
M ++G P++ +Y I++ +LGK+D+ + +L+EM G P+ +N L+ K
Sbjct: 414 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473
Query: 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYT 189
+ A+ + M G P V F +L+ GL + + +M ++G + + V Y
Sbjct: 474 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 533
Query: 190 VMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249
+I +++ GE+++A+ L + M+ +G + TYNS+I+G C AG+ D+A ++ ++M
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 593
Query: 250 GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292
G P+ + N L++ L +G + EA E + MV +G +V+
Sbjct: 594 GHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT 636
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 134/265 (50%), Gaps = 3/265 (1%)
Query: 21 GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI 80
G VGLA +V+ +++K +P SY ++ + + V +MS +G P+
Sbjct: 403 GLVGLALEVLHD-MRNK--GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNT 459
Query: 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNH 140
+ +N ++ A + ++ + + EM R G PD +T+N L+ L + D+ AL LL
Sbjct: 460 VGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRD 519
Query: 141 MKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE 200
M G + + + TL++ R G + + +EM +G D + Y +I AGE
Sbjct: 520 MISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGE 579
Query: 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNT 260
++KA+ LF+ M+ G P+ + N +I G C +G +EA KEM RG P+ + +N+
Sbjct: 580 VDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 639
Query: 261 LVSNLRNAGKLAEAHEVIRHMVEKG 285
L++ L AG++ + + R + +G
Sbjct: 640 LINGLCRAGRIEDGLTMFRKLQAEG 664
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 138/299 (46%), Gaps = 35/299 (11%)
Query: 20 CGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD 79
C V A +++E L P ++N ++ L + + +M G+APD
Sbjct: 265 CNRVNEALQLLEEMF---LMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPD 321
Query: 80 ILTYNIVM----------CAK---YRL------------------GKLDQFHRLLDEMGR 108
+TY +M AK YR+ G+LD +L +M
Sbjct: 322 DITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVT 381
Query: 109 S-GFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167
S G PD TYN L++ K AL +L+ M+ G P+V +T L+DG + G +D
Sbjct: 382 SYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKID 441
Query: 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMI 227
+EM+ G P+ V + +I+++ + +A ++F M KG P+V+T+NS+I
Sbjct: 442 EAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLI 501
Query: 228 RGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGK 286
G C + A ++++M S G N + YNTL++ G++ EA +++ MV +G
Sbjct: 502 SGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 143/290 (49%), Gaps = 10/290 (3%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M G ++ IL+ C G++ A V+ L +P +N ++ A
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGL---KPNTVGFNCLISAF-- 469
Query: 58 IRQYKLIEWV--YQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF 115
+++++ E V +++M +G PD+ T+N ++ + ++ LL +M G +
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANT 529
Query: 116 HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175
TYN L++ + + A L+N M G + + +L+ GL RAG +D + F++
Sbjct: 530 VTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEK 589
Query: 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235
M G P + ++I +G +E+A + M+ +G P++ T+NS+I G C AG+
Sbjct: 590 MLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGR 649
Query: 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
++ TM +++++ G P+ + +NTL+S L G + +A ++ +E G
Sbjct: 650 IEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDG 699
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 125/284 (44%), Gaps = 40/284 (14%)
Query: 38 LFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLD 97
+++ P SYN +L L+ +K+ V+ M P + T+ +VM A + ++D
Sbjct: 175 VYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEID 234
Query: 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLL------------------- 138
LL +M + G P+ Y L+H L K ++ AL LL
Sbjct: 235 SALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVI 294
Query: 139 ----------------NHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM 182
N M GF P + + LM+GL + G +DA K F +
Sbjct: 295 LGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK---- 350
Query: 183 PDVVCYTVMITSYIAAGELEKAQDLFDGMITK-GQLPNVFTYNSMIRGFCMAGKFDEACT 241
P++V + +I ++ G L+ A+ + M+T G +P+V TYNS+I G+ G A
Sbjct: 351 PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALE 410
Query: 242 MMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
++ +M ++GC PN Y LV GK+ EA+ V+ M G
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG 454
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 124/265 (46%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
M +G FN LI + + VE F + +P ++N+++ L + +
Sbjct: 450 MSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE 509
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
K W+ + M EG + +TYN ++ A R G++ + +L++EM G D TYN
Sbjct: 510 IKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L+ L + + A +L M G PS + L++GL R+G ++ F EM +G
Sbjct: 570 LIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
PD+V + +I AG +E +F + +G P+ T+N+++ C G +AC
Sbjct: 630 STPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDAC 689
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNL 265
++ E G PN ++ L+ ++
Sbjct: 690 LLLDEGIEDGFVPNHRTWSILLQSI 714
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 3/232 (1%)
Query: 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMG 107
Y ++ L ++K I+ + QM DEG + +M + G Q RL+ EM
Sbjct: 114 YQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM- 172
Query: 108 RSGFS--PDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165
R+ +S P F +YN++L +L G+ A N+ M P++ F +M
Sbjct: 173 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE 232
Query: 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNS 225
+D+ +M GC+P+ V Y +I S + +A L + M G +P+ T+N
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 292
Query: 226 MIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEV 277
+I G C + +EA M+ M RG P+ + Y L++ L G++ A ++
Sbjct: 293 VILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL 344
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Query: 107 GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166
++G+ F Y +L+ LG + LL MK+ G F ++M +AG
Sbjct: 103 SQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFP 162
Query: 167 DACKYFFDEMANK-GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNS 225
EM N C P Y V++ ++ + A ++F M+++ P +FT+
Sbjct: 163 GQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGV 222
Query: 226 MIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
+++ FC + D A +++++M GC PN ++Y TL+ +L ++ EA +++ M G
Sbjct: 223 VMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMG 282
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 10/208 (4%)
Query: 1 MIENGFPTTARTFNILICTC---GEVGLARKVVERFIKSKLFNFRPFKN-SYNAILHALL 56
MI G T+N LI GE+ ARK+V + F P +YN+++ L
Sbjct: 520 MISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMV----FQGSPLDEITYNSLIKGLC 575
Query: 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH 116
+ ++++M +G+AP ++ NI++ R G +++ EM G +PD
Sbjct: 576 RAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIV 635
Query: 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL-DACKYFFDE 175
T+N L++ L + + L + ++ G P + F TLM L + G + DAC DE
Sbjct: 636 TFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDAC-LLLDE 694
Query: 176 MANKGCMPDVVCYTVMITSYIAAGELEK 203
G +P+ +++++ S I L++
Sbjct: 695 GIEDGFVPNHRTWSILLQSIIPQETLDR 722
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 6/175 (3%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG 57
M+ G P T+N LI C GEV AR + E+ ++ P S N +++ L
Sbjct: 555 MVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD---GHAPSNISCNILINGLCR 611
Query: 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117
+ ++M G PDI+T+N ++ R G+++ + ++ G PD T
Sbjct: 612 SGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVT 671
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYF 172
+N L+ L KG A LL+ E GF P+ ++ L+ + LD +++
Sbjct: 672 FNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDRRRFY 726
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 126/243 (51%)
Query: 43 PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102
P YN ++ L + + M +G P+ +TYN ++ GKLD+ L
Sbjct: 255 PSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSL 314
Query: 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162
L+ M S P+ TY L++ L K + A+ LL+ M+E G+ + ++ L+ GL +
Sbjct: 315 LERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFK 374
Query: 163 AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT 222
G + + +MA KGC P++V Y+V++ G+ +A+++ + MI G LPN +T
Sbjct: 375 EGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYT 434
Query: 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282
Y+S+++GF G +EA + KEM+ GC+ N Y+ L+ L G++ EA V M+
Sbjct: 435 YSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKML 494
Query: 283 EKG 285
G
Sbjct: 495 TIG 497
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 139/285 (48%), Gaps = 2/285 (0%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
+IE F R + V L ++V+ F + + + F + N I++ L R
Sbjct: 110 IIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKR--SVKSFNSVLNVIINEGLYHRG 167
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120
+ ++V + +P+ L++N+V+ A +L +D+ + M PD +TY
Sbjct: 168 LEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCT 227
Query: 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180
L+ L K ++ A+ LL+ M+ G PS + + L+DGL + G+L D M KG
Sbjct: 228 LMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKG 287
Query: 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240
C+P+ V Y +I G+L+KA L + M++ +PN TY ++I G + +A
Sbjct: 288 CVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAV 347
Query: 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285
++ ME RG + N +Y+ L+S L GK EA + R M EKG
Sbjct: 348 RLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG 392
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 115/247 (46%)
Query: 39 FNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQ 98
N P S+N ++ AL +R V++ M + PD TY +M + ++D+
Sbjct: 181 MNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDE 240
Query: 99 FHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158
LLDEM G SP YN+L+ L K L+++M G P+ + + TL+
Sbjct: 241 AVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIH 300
Query: 159 GLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218
GL G LD + M + C+P+ V Y +I + A L M +G
Sbjct: 301 GLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL 360
Query: 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVI 278
N Y+ +I G GK +EA ++ ++M +GC PN +VY+ LV L GK EA E++
Sbjct: 361 NQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEIL 420
Query: 279 RHMVEKG 285
M+ G
Sbjct: 421 NRMIASG 427
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 111 FSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACK 170
SP+ ++N+++ L K A+ + M E P + TLMDGL + +D
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 171 YFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGF 230
DEM ++GC P V Y V+I G+L + L D M KG +PN TYN++I G
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302
Query: 231 CMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIH 289
C+ GK D+A ++++ M S C PN + Y TL++ L + +A ++ M E+G +++
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLN 361
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 8/286 (2%)
Query: 1 MIENGFPTTARTFNILI---CTCGEVGLARKVVER-FIKSKLFNFRPFKNSYNAILHALL 56
M G + +N+LI C G++ K+V+ F+K + P + +YN ++H L
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCV----PNEVTYNTLIHGLC 303
Query: 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH 116
+ + ++M P+ +TY ++ + + RLL M G+ + H
Sbjct: 304 LKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQH 363
Query: 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM 176
Y++L+ L K K A++L M E G P+++ ++ L+DGL R G + K + M
Sbjct: 364 IYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRM 423
Query: 177 ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236
GC+P+ Y+ ++ + G E+A ++ M G N F Y+ +I G C G+
Sbjct: 424 IASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRV 483
Query: 237 DEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282
EA + +M + G P+ + Y++++ L G + A ++ M+
Sbjct: 484 KEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEML 529
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 44/295 (14%)
Query: 12 TFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVY 68
T+N LI C G++ A ++ER + SK P +Y +++ L+ R+ +
Sbjct: 294 TYNTLIHGLCLKGKLDKAVSLLERMVSSKCI---PNDVTYGTLINGLVKQRRATDAVRLL 350
Query: 69 QQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128
M + GY + Y++++ ++ GK ++ L +M G P+ Y++L+ L +
Sbjct: 351 SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCRE 410
Query: 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188
KP A +LN M G P+ +++LM G + G + + EM GC + CY
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCY 470
Query: 189 TVMITSYIAAGELEKAQDLFDGMITKG--------------------------------- 215
+V+I G +++A ++ M+T G
Sbjct: 471 SVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLC 530
Query: 216 -----QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265
P+V TYN ++ G CM A ++ M RGC+P+ + NT ++ L
Sbjct: 531 QEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTL 585
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 19/243 (7%)
Query: 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ 60
MI +G A T++ L+ + GL + V+ + + K Y+ ++ L G+ +
Sbjct: 423 MIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGR 482
Query: 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM---GRSGFSPDFHT 117
K V+ +M G PD + Y+ ++ +G +D +L EM PD T
Sbjct: 483 VKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVT 542
Query: 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN-LDACKYFFDEM 176
YNILL L A++LLN M + G DP V+ T ++ LS N D + F +E
Sbjct: 543 YNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEE- 601
Query: 177 ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236
++ + + A + + M+ K P T+ ++R C K
Sbjct: 602 --------------LVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREICKPKKI 647
Query: 237 DEA 239
+ A
Sbjct: 648 NAA 650
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,656,946
Number of Sequences: 539616
Number of extensions: 4810948
Number of successful extensions: 19245
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 12496
Number of HSP's gapped (non-prelim): 2982
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)