Query 043969
Match_columns 300
No_of_seqs 543 out of 1481
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 10:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.2E-54 4.7E-59 379.6 38.0 296 1-296 463-766 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5E-54 1.1E-58 377.3 37.8 293 1-293 498-798 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 9.1E-49 2E-53 340.4 30.7 287 1-299 149-477 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.7E-47 3.7E-52 332.5 30.7 283 8-298 187-508 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 8.4E-47 1.8E-51 335.2 30.2 290 2-299 179-470 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 3.5E-46 7.6E-51 331.3 31.6 288 3-299 281-640 (857)
7 PRK11788 tetratricopeptide rep 99.9 9.1E-22 2E-26 161.4 31.3 259 21-284 46-311 (389)
8 PRK11788 tetratricopeptide rep 99.9 2E-21 4.3E-26 159.4 33.0 273 7-285 66-348 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 8.2E-20 1.8E-24 165.2 36.0 268 9-285 600-867 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1.9E-19 4.1E-24 162.8 36.8 273 6-285 461-733 (899)
11 PRK15174 Vi polysaccharide exp 99.8 8.4E-17 1.8E-21 138.9 35.7 268 10-285 110-382 (656)
12 PRK15174 Vi polysaccharide exp 99.8 7.8E-17 1.7E-21 139.2 35.5 271 8-285 74-348 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 7.9E-16 1.7E-20 133.1 32.5 257 24-285 308-572 (615)
14 TIGR00990 3a0801s09 mitochondr 99.8 3E-15 6.4E-20 129.5 34.5 188 94-285 308-497 (615)
15 PF13429 TPR_15: Tetratricopep 99.8 1.5E-18 3.3E-23 135.5 11.2 267 9-283 8-276 (280)
16 KOG4422 Uncharacterized conser 99.8 3.9E-15 8.4E-20 115.5 26.4 276 6-285 203-552 (625)
17 KOG4626 O-linked N-acetylgluco 99.8 3.7E-16 8.1E-21 126.3 21.6 264 11-285 219-486 (966)
18 PRK10747 putative protoheme IX 99.7 3.9E-14 8.5E-19 115.8 31.9 254 19-283 127-389 (398)
19 PRK11447 cellulose synthase su 99.7 4E-14 8.6E-19 130.4 33.7 128 153-282 606-738 (1157)
20 TIGR00540 hemY_coli hemY prote 99.7 7.8E-14 1.7E-18 114.6 30.5 260 17-283 125-398 (409)
21 PRK11447 cellulose synthase su 99.7 9.6E-14 2.1E-18 127.9 33.9 262 17-284 358-700 (1157)
22 PRK09782 bacteriophage N4 rece 99.7 1.2E-13 2.5E-18 123.0 32.7 263 9-283 476-739 (987)
23 KOG4626 O-linked N-acetylgluco 99.7 7.9E-15 1.7E-19 118.8 21.9 266 9-285 115-418 (966)
24 KOG4422 Uncharacterized conser 99.7 1.2E-13 2.6E-18 107.4 25.9 238 44-285 206-463 (625)
25 PRK09782 bacteriophage N4 rece 99.7 3.6E-13 7.9E-18 119.8 32.3 232 44-285 476-707 (987)
26 PRK10049 pgaA outer membrane p 99.7 1.3E-12 2.8E-17 115.5 35.5 273 8-285 47-389 (765)
27 PF13429 TPR_15: Tetratricopep 99.7 2.1E-15 4.6E-20 117.9 14.4 233 9-248 43-276 (280)
28 PRK10049 pgaA outer membrane p 99.7 1.3E-12 2.8E-17 115.5 32.9 274 7-285 80-423 (765)
29 PRK10747 putative protoheme IX 99.7 1.3E-12 2.9E-17 106.8 30.6 253 23-285 97-358 (398)
30 KOG1126 DNA-binding cell divis 99.7 1.2E-13 2.6E-18 112.6 22.8 254 25-285 334-621 (638)
31 PRK12370 invasion protein regu 99.6 1.6E-12 3.5E-17 110.8 30.2 266 9-285 255-536 (553)
32 COG2956 Predicted N-acetylgluc 99.6 9.1E-13 2E-17 98.9 23.1 257 24-285 49-312 (389)
33 COG2956 Predicted N-acetylgluc 99.6 4.7E-12 1E-16 95.1 26.8 232 47-285 38-279 (389)
34 TIGR02521 type_IV_pilW type IV 99.6 2.6E-12 5.6E-17 97.7 26.2 199 81-283 32-231 (234)
35 TIGR02521 type_IV_pilW type IV 99.6 2.9E-12 6.3E-17 97.5 25.6 203 43-249 29-232 (234)
36 COG3071 HemY Uncharacterized e 99.6 3E-11 6.5E-16 93.3 30.2 255 23-282 97-388 (400)
37 PRK14574 hmsH outer membrane p 99.6 1.6E-11 3.5E-16 107.4 32.5 265 15-284 73-396 (822)
38 TIGR00540 hemY_coli hemY prote 99.6 1.6E-11 3.5E-16 101.0 30.8 259 21-284 95-366 (409)
39 PRK14574 hmsH outer membrane p 99.6 3.8E-11 8.2E-16 105.2 34.3 265 17-285 109-446 (822)
40 KOG1155 Anaphase-promoting com 99.6 1.2E-11 2.7E-16 97.2 25.5 264 18-285 235-537 (559)
41 COG3071 HemY Uncharacterized e 99.6 1.1E-10 2.4E-15 90.2 29.4 236 57-295 96-372 (400)
42 PRK12370 invasion protein regu 99.6 1.3E-11 2.8E-16 105.4 26.7 232 44-284 255-502 (553)
43 KOG4318 Bicoid mRNA stability 99.5 3.9E-13 8.5E-18 113.0 16.0 250 1-270 16-286 (1088)
44 KOG1126 DNA-binding cell divis 99.5 7.3E-12 1.6E-16 102.5 21.1 239 9-252 352-623 (638)
45 KOG1129 TPR repeat-containing 99.5 6.7E-12 1.5E-16 94.6 18.9 230 49-285 227-459 (478)
46 PF13041 PPR_2: PPR repeat fam 99.5 8.2E-14 1.8E-18 77.9 6.5 48 183-230 1-48 (50)
47 KOG2076 RNA polymerase III tra 99.5 8E-10 1.7E-14 93.8 32.0 266 17-285 146-479 (895)
48 KOG1155 Anaphase-promoting com 99.5 6.7E-11 1.5E-15 93.1 24.0 241 3-247 255-534 (559)
49 PF13041 PPR_2: PPR repeat fam 99.5 1.1E-13 2.4E-18 77.4 6.5 50 218-267 1-50 (50)
50 KOG2002 TPR-containing nuclear 99.5 1.9E-11 4.1E-16 104.1 21.9 280 2-285 444-746 (1018)
51 KOG1129 TPR repeat-containing 99.5 2E-11 4.3E-16 92.1 18.2 231 13-249 226-458 (478)
52 KOG1173 Anaphase-promoting com 99.5 6.1E-10 1.3E-14 89.9 27.6 275 5-285 239-519 (611)
53 KOG1840 Kinesin light chain [C 99.5 1.1E-10 2.3E-15 96.0 23.9 237 47-283 201-478 (508)
54 KOG2003 TPR repeat-containing 99.4 1.9E-10 4E-15 90.8 22.4 207 57-270 502-709 (840)
55 PF12569 NARP1: NMDA receptor- 99.4 3.4E-09 7.3E-14 88.3 31.1 260 16-284 10-334 (517)
56 PRK11189 lipoprotein NlpI; Pro 99.4 1.2E-09 2.5E-14 86.0 26.6 95 83-179 67-161 (296)
57 KOG2076 RNA polymerase III tra 99.4 8.3E-10 1.8E-14 93.6 26.8 273 8-283 171-511 (895)
58 PRK11189 lipoprotein NlpI; Pro 99.4 1.5E-09 3.3E-14 85.3 26.9 227 24-260 40-275 (296)
59 KOG1840 Kinesin light chain [C 99.4 3.9E-10 8.4E-15 92.8 23.5 243 5-247 194-477 (508)
60 KOG2003 TPR repeat-containing 99.4 3.7E-10 8E-15 89.1 21.3 259 19-284 428-689 (840)
61 KOG0547 Translocase of outer m 99.4 1.1E-09 2.3E-14 87.1 22.6 223 20-248 336-565 (606)
62 COG3063 PilF Tfp pilus assembl 99.4 3.5E-09 7.6E-14 76.3 23.2 195 84-282 39-234 (250)
63 KOG2002 TPR-containing nuclear 99.3 1.6E-08 3.5E-13 86.8 29.3 273 8-285 268-560 (1018)
64 KOG0547 Translocase of outer m 99.3 3.7E-09 8E-14 84.2 23.6 226 55-285 336-567 (606)
65 COG3063 PilF Tfp pilus assembl 99.3 1.5E-08 3.2E-13 73.1 23.9 207 47-259 37-244 (250)
66 PF04733 Coatomer_E: Coatomer 99.3 8.2E-10 1.8E-14 85.7 18.8 251 19-285 10-266 (290)
67 KOG1174 Anaphase-promoting com 99.3 2.4E-08 5.3E-13 78.1 25.6 269 7-285 229-501 (564)
68 KOG0495 HAT repeat protein [RN 99.3 1.1E-07 2.3E-12 78.8 30.1 265 11-284 517-782 (913)
69 KOG4318 Bicoid mRNA stability 99.3 2.4E-10 5.1E-15 96.8 14.4 233 32-285 12-266 (1088)
70 KOG1173 Anaphase-promoting com 99.2 1.3E-08 2.8E-13 82.5 23.2 253 7-266 275-533 (611)
71 cd05804 StaR_like StaR_like; a 99.2 1.6E-07 3.5E-12 76.4 29.0 263 19-285 52-337 (355)
72 KOG0495 HAT repeat protein [RN 99.2 4.1E-07 8.9E-12 75.5 30.4 232 47-285 518-749 (913)
73 PF12569 NARP1: NMDA receptor- 99.2 1.1E-07 2.5E-12 79.3 26.8 229 52-285 11-292 (517)
74 KOG1915 Cell cycle control pro 99.2 5.6E-07 1.2E-11 72.0 27.7 275 6-285 170-537 (677)
75 cd05804 StaR_like StaR_like; a 99.2 5.3E-07 1.1E-11 73.3 29.2 270 10-283 6-292 (355)
76 PF04733 Coatomer_E: Coatomer 99.1 8.2E-09 1.8E-13 80.2 16.2 223 12-249 37-265 (290)
77 KOG1070 rRNA processing protei 99.1 4.2E-07 9.1E-12 81.2 26.5 233 42-280 1454-1696(1710)
78 KOG1125 TPR repeat-containing 99.1 7.9E-08 1.7E-12 78.3 19.6 225 52-283 292-526 (579)
79 PLN02789 farnesyltranstransfer 99.0 1.8E-06 3.9E-11 68.2 26.3 226 54-285 46-303 (320)
80 KOG4340 Uncharacterized conser 99.0 6.2E-07 1.3E-11 67.6 20.9 273 1-279 1-334 (459)
81 PF12854 PPR_1: PPR repeat 99.0 6.6E-10 1.4E-14 55.9 3.8 33 4-36 1-33 (34)
82 PLN02789 farnesyltranstransfer 99.0 3.2E-06 6.9E-11 66.8 25.9 215 12-233 39-268 (320)
83 KOG1070 rRNA processing protei 99.0 1.4E-06 3E-11 78.2 25.7 236 6-246 1454-1697(1710)
84 TIGR03302 OM_YfiO outer membra 99.0 4.9E-07 1.1E-11 69.0 20.3 58 226-283 172-231 (235)
85 PF12854 PPR_1: PPR repeat 99.0 1E-09 2.2E-14 55.2 3.7 30 181-210 3-32 (34)
86 KOG1125 TPR repeat-containing 99.0 5.1E-07 1.1E-11 73.7 20.4 249 19-277 294-564 (579)
87 TIGR03302 OM_YfiO outer membra 98.9 6.6E-07 1.4E-11 68.2 20.5 169 78-249 31-232 (235)
88 KOG3081 Vesicle coat complex C 98.9 5.9E-06 1.3E-10 61.3 25.0 264 3-285 3-272 (299)
89 KOG1128 Uncharacterized conser 98.9 4.2E-07 9E-12 76.2 18.6 217 48-285 401-617 (777)
90 COG5010 TadD Flp pilus assembl 98.9 1.5E-06 3.3E-11 64.3 19.0 160 84-247 70-229 (257)
91 KOG1128 Uncharacterized conser 98.9 7.8E-07 1.7E-11 74.6 19.2 239 5-264 393-632 (777)
92 COG5010 TadD Flp pilus assembl 98.8 3.9E-06 8.5E-11 62.1 20.1 167 114-285 66-232 (257)
93 PRK10370 formate-dependent nit 98.8 3.8E-06 8.3E-11 61.8 19.9 119 128-249 52-173 (198)
94 PRK10370 formate-dependent nit 98.8 6.3E-07 1.4E-11 65.9 15.7 160 18-194 24-186 (198)
95 PRK14720 transcript cleavage f 98.8 6.4E-06 1.4E-10 72.7 24.1 212 47-266 33-268 (906)
96 PRK04841 transcriptional regul 98.8 2.2E-05 4.8E-10 72.1 28.7 268 18-285 460-761 (903)
97 KOG1915 Cell cycle control pro 98.8 3.8E-05 8.3E-10 61.9 28.0 256 22-285 85-352 (677)
98 KOG3081 Vesicle coat complex C 98.8 1.4E-05 3E-10 59.4 21.5 226 9-249 40-271 (299)
99 KOG1174 Anaphase-promoting com 98.8 2.2E-05 4.7E-10 62.1 23.6 237 42-285 229-468 (564)
100 PRK15179 Vi polysaccharide bio 98.8 5.6E-06 1.2E-10 72.1 22.8 146 112-261 83-228 (694)
101 KOG0624 dsRNA-activated protei 98.8 3E-05 6.5E-10 59.9 25.8 270 8-285 67-371 (504)
102 KOG1156 N-terminal acetyltrans 98.8 2.4E-05 5.2E-10 65.2 24.6 187 23-214 54-248 (700)
103 KOG1156 N-terminal acetyltrans 98.8 6.6E-05 1.4E-09 62.7 27.9 169 8-179 73-248 (700)
104 KOG0985 Vesicle coat protein c 98.8 1.8E-05 3.9E-10 69.3 24.6 194 79-298 1103-1327(1666)
105 KOG3060 Uncharacterized conser 98.8 2.6E-05 5.5E-10 57.7 21.9 188 58-249 25-220 (289)
106 PRK14720 transcript cleavage f 98.7 7.8E-06 1.7E-10 72.2 21.9 214 9-231 30-268 (906)
107 COG4783 Putative Zn-dependent 98.7 2.4E-05 5.2E-10 63.1 22.3 200 25-249 252-454 (484)
108 KOG3060 Uncharacterized conser 98.7 3.9E-05 8.5E-10 56.7 21.9 189 23-215 25-221 (289)
109 KOG2047 mRNA splicing factor [ 98.7 0.00011 2.3E-09 61.6 27.2 272 15-295 107-429 (835)
110 PRK15359 type III secretion sy 98.7 1.2E-06 2.7E-11 60.9 13.6 108 31-144 14-121 (144)
111 PRK15179 Vi polysaccharide bio 98.7 3.2E-05 6.9E-10 67.5 24.8 133 44-179 85-217 (694)
112 KOG4340 Uncharacterized conser 98.7 4.1E-06 8.8E-11 63.3 16.5 228 47-285 12-271 (459)
113 PRK15359 type III secretion sy 98.7 3.2E-06 7E-11 58.9 15.2 108 66-179 14-121 (144)
114 KOG2047 mRNA splicing factor [ 98.7 0.00013 2.7E-09 61.2 28.0 267 11-283 249-578 (835)
115 PRK04841 transcriptional regul 98.6 0.00016 3.4E-09 66.6 29.1 268 17-284 416-720 (903)
116 KOG0548 Molecular co-chaperone 98.6 0.00014 3.1E-09 59.4 25.2 80 7-89 33-113 (539)
117 KOG3617 WD40 and TPR repeat-co 98.6 7.7E-06 1.7E-10 70.0 18.1 240 9-282 725-994 (1416)
118 KOG3785 Uncharacterized conser 98.6 0.00012 2.5E-09 57.1 22.4 167 120-290 290-463 (557)
119 TIGR02552 LcrH_SycD type III s 98.6 5.1E-06 1.1E-10 57.3 14.3 96 47-144 19-114 (135)
120 PF09976 TPR_21: Tetratricopep 98.6 6.8E-06 1.5E-10 57.4 14.9 126 151-281 13-144 (145)
121 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 5.9E-06 1.3E-10 66.8 16.2 122 154-282 173-295 (395)
122 KOG4162 Predicted calmodulin-b 98.6 0.0001 2.3E-09 62.7 23.6 130 153-285 653-784 (799)
123 KOG2376 Signal recognition par 98.6 0.00025 5.4E-09 58.8 28.9 120 16-142 18-137 (652)
124 TIGR02552 LcrH_SycD type III s 98.6 7.7E-06 1.7E-10 56.5 14.6 98 80-179 17-114 (135)
125 PF10037 MRP-S27: Mitochondria 98.6 1.5E-06 3.3E-11 70.4 12.0 124 5-128 61-186 (429)
126 PF10037 MRP-S27: Mitochondria 98.5 6.7E-06 1.4E-10 66.8 14.1 124 110-233 61-186 (429)
127 KOG1914 mRNA cleavage and poly 98.5 0.00039 8.5E-09 57.1 29.1 99 185-285 366-465 (656)
128 COG4783 Putative Zn-dependent 98.5 0.00037 8E-09 56.5 24.4 232 25-285 218-455 (484)
129 TIGR00756 PPR pentatricopeptid 98.5 3.9E-07 8.5E-12 46.4 4.7 33 187-219 2-34 (35)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.2E-05 2.5E-10 65.1 14.9 124 82-212 171-295 (395)
131 TIGR00756 PPR pentatricopeptid 98.5 3.7E-07 8E-12 46.5 4.2 34 222-255 2-35 (35)
132 KOG2376 Signal recognition par 98.5 0.00021 4.6E-09 59.2 21.4 220 51-285 18-254 (652)
133 KOG0985 Vesicle coat protein c 98.4 0.00024 5.2E-09 62.7 22.3 210 47-284 1106-1341(1666)
134 PF13812 PPR_3: Pentatricopept 98.4 5.7E-07 1.2E-11 45.5 4.4 29 223-251 4-32 (34)
135 PF13812 PPR_3: Pentatricopept 98.4 5.6E-07 1.2E-11 45.5 4.3 33 186-218 2-34 (34)
136 KOG2053 Mitochondrial inherita 98.4 0.00096 2.1E-08 58.1 25.2 223 21-250 20-256 (932)
137 KOG2053 Mitochondrial inherita 98.4 0.0011 2.4E-08 57.8 26.7 224 55-285 19-256 (932)
138 PF09976 TPR_21: Tetratricopep 98.4 5.9E-05 1.3E-09 52.7 15.4 124 118-245 15-143 (145)
139 PF08579 RPM2: Mitochondrial r 98.4 9.2E-06 2E-10 52.1 9.8 81 47-127 27-116 (120)
140 KOG4162 Predicted calmodulin-b 98.3 0.0013 2.7E-08 56.5 23.5 207 40-248 318-541 (799)
141 KOG3785 Uncharacterized conser 98.3 0.00021 4.5E-09 55.7 17.4 191 86-285 291-491 (557)
142 PF14938 SNAP: Soluble NSF att 98.3 7.6E-05 1.7E-09 58.5 15.7 137 152-289 116-271 (282)
143 PF08579 RPM2: Mitochondrial r 98.3 2.7E-05 5.8E-10 50.1 10.2 72 195-266 35-115 (120)
144 PF05843 Suf: Suppressor of fo 98.3 5.8E-05 1.3E-09 58.9 14.2 129 82-213 3-135 (280)
145 PF12895 Apc3: Anaphase-promot 98.3 3E-06 6.6E-11 53.0 5.8 81 198-280 2-83 (84)
146 KOG3616 Selective LIM binding 98.3 0.00016 3.5E-09 61.7 17.2 137 86-244 738-874 (1636)
147 KOG0548 Molecular co-chaperone 98.3 0.00077 1.7E-08 55.3 20.3 221 14-249 228-455 (539)
148 cd00189 TPR Tetratricopeptide 98.3 4E-05 8.8E-10 48.8 11.3 93 189-283 4-96 (100)
149 TIGR02795 tol_pal_ybgF tol-pal 98.2 7.1E-05 1.5E-09 50.2 12.4 94 154-249 6-105 (119)
150 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00011 2.3E-09 49.4 13.0 97 48-144 5-105 (119)
151 PRK10866 outer membrane biogen 98.2 0.0012 2.7E-08 50.3 19.9 178 86-283 38-240 (243)
152 PRK15363 pathogenicity island 98.2 0.00059 1.3E-08 47.3 15.9 95 152-248 37-131 (157)
153 cd00189 TPR Tetratricopeptide 98.2 5.8E-05 1.2E-09 48.0 10.6 88 52-141 7-94 (100)
154 PF01535 PPR: PPR repeat; Int 98.2 3.7E-06 8.1E-11 41.3 3.7 25 188-212 3-27 (31)
155 KOG3616 Selective LIM binding 98.2 0.00036 7.8E-09 59.7 17.2 170 50-244 737-906 (1636)
156 PRK10866 outer membrane biogen 98.1 0.0017 3.7E-08 49.5 19.7 180 48-247 35-239 (243)
157 PF01535 PPR: PPR repeat; Int 98.1 4.2E-06 9E-11 41.1 3.6 29 222-250 2-30 (31)
158 PRK02603 photosystem I assembl 98.1 0.00033 7.1E-09 50.5 14.6 85 151-236 36-122 (172)
159 PF05843 Suf: Suppressor of fo 98.1 0.00016 3.5E-09 56.5 13.6 129 117-249 3-136 (280)
160 PRK15363 pathogenicity island 98.1 0.00059 1.3E-08 47.3 14.1 96 47-144 37-132 (157)
161 CHL00033 ycf3 photosystem I as 98.1 0.00019 4.1E-09 51.6 12.5 79 47-126 37-117 (168)
162 PRK02603 photosystem I assembl 98.1 0.00058 1.3E-08 49.3 14.8 87 47-134 37-125 (172)
163 KOG0624 dsRNA-activated protei 98.1 0.0031 6.7E-08 49.2 25.4 232 44-285 37-299 (504)
164 PF12895 Apc3: Anaphase-promot 98.0 1E-05 2.3E-10 50.6 4.9 20 51-70 31-50 (84)
165 PF06239 ECSIT: Evolutionarily 98.0 0.00011 2.4E-09 53.4 10.4 51 42-92 44-99 (228)
166 KOG1914 mRNA cleavage and poly 98.0 0.0036 7.9E-08 51.8 20.0 151 61-213 347-500 (656)
167 PLN03088 SGT1, suppressor of 98.0 0.00032 7E-09 56.9 14.2 90 18-109 10-99 (356)
168 KOG3617 WD40 and TPR repeat-co 98.0 0.0016 3.5E-08 56.6 18.5 28 184-211 966-993 (1416)
169 KOG1127 TPR repeat-containing 98.0 0.00095 2.1E-08 58.9 16.9 183 25-213 473-658 (1238)
170 PF06239 ECSIT: Evolutionarily 98.0 0.00015 3.3E-09 52.6 10.1 49 114-162 46-99 (228)
171 PLN03088 SGT1, suppressor of 98.0 0.00042 9E-09 56.2 13.7 93 51-145 8-100 (356)
172 CHL00033 ycf3 photosystem I as 97.9 0.00039 8.5E-09 49.9 11.9 93 151-244 36-137 (168)
173 PF14938 SNAP: Soluble NSF att 97.9 0.0037 8.1E-08 49.1 17.8 196 47-246 37-263 (282)
174 PF12688 TPR_5: Tetratrico pep 97.9 0.002 4.3E-08 43.0 13.6 55 124-178 10-66 (120)
175 PF12688 TPR_5: Tetratrico pep 97.9 0.0029 6.3E-08 42.2 14.2 91 157-247 8-102 (120)
176 KOG1127 TPR repeat-containing 97.8 0.0033 7.1E-08 55.8 17.5 181 61-248 474-658 (1238)
177 PF14559 TPR_19: Tetratricopep 97.8 0.00012 2.5E-09 43.7 6.5 52 197-249 3-54 (68)
178 PF14559 TPR_19: Tetratricopep 97.8 0.00013 2.7E-09 43.5 6.4 51 58-109 4-54 (68)
179 KOG1130 Predicted G-alpha GTPa 97.8 0.0008 1.7E-08 53.6 12.1 274 10-284 15-344 (639)
180 PRK10153 DNA-binding transcrip 97.8 0.0044 9.5E-08 52.8 17.4 136 75-214 332-482 (517)
181 PRK10153 DNA-binding transcrip 97.8 0.0059 1.3E-07 52.0 17.9 143 110-258 332-489 (517)
182 PF13525 YfiO: Outer membrane 97.8 0.0087 1.9E-07 44.5 17.2 50 226-275 147-198 (203)
183 PF04840 Vps16_C: Vps16, C-ter 97.7 0.016 3.5E-07 46.1 22.4 111 152-282 179-289 (319)
184 KOG0553 TPR repeat-containing 97.7 0.0013 2.8E-08 50.2 11.5 99 90-192 91-189 (304)
185 PF13432 TPR_16: Tetratricopep 97.7 0.00032 6.9E-09 41.3 7.0 55 53-108 5-59 (65)
186 KOG2796 Uncharacterized conser 97.7 0.0095 2.1E-07 44.9 15.6 132 82-214 179-315 (366)
187 PF13432 TPR_16: Tetratricopep 97.7 0.0004 8.7E-09 40.9 7.1 55 193-248 5-59 (65)
188 PF13414 TPR_11: TPR repeat; P 97.7 0.0005 1.1E-08 41.0 7.5 64 219-283 2-66 (69)
189 KOG0553 TPR repeat-containing 97.7 0.0014 3E-08 50.1 11.2 96 125-224 91-186 (304)
190 PRK10803 tol-pal system protei 97.7 0.0024 5.3E-08 49.2 12.9 94 153-248 146-245 (263)
191 PRK10803 tol-pal system protei 97.6 0.0042 9E-08 47.9 13.8 100 186-285 144-247 (263)
192 PF03704 BTAD: Bacterial trans 97.6 0.0075 1.6E-07 42.1 13.8 72 187-259 64-140 (146)
193 PF13414 TPR_11: TPR repeat; P 97.6 0.00049 1.1E-08 41.1 6.6 61 47-108 5-66 (69)
194 COG4700 Uncharacterized protei 97.6 0.014 2.9E-07 41.7 17.4 128 147-278 86-216 (251)
195 COG4235 Cytochrome c biogenesi 97.5 0.012 2.5E-07 45.3 14.6 113 78-194 154-269 (287)
196 COG4235 Cytochrome c biogenesi 97.5 0.02 4.3E-07 44.1 15.7 102 112-215 153-257 (287)
197 PRK15331 chaperone protein Sic 97.5 0.017 3.7E-07 40.5 13.7 88 159-248 46-133 (165)
198 PF13525 YfiO: Outer membrane 97.4 0.026 5.6E-07 42.0 19.0 55 20-74 15-71 (203)
199 COG4700 Uncharacterized protei 97.4 0.02 4.4E-07 40.8 17.6 133 77-211 86-219 (251)
200 KOG2796 Uncharacterized conser 97.4 0.033 7E-07 42.1 16.1 141 117-260 179-324 (366)
201 PF13424 TPR_12: Tetratricopep 97.4 0.00088 1.9E-08 41.1 6.1 63 221-283 6-74 (78)
202 KOG2041 WD40 repeat protein [G 97.4 0.052 1.1E-06 46.8 17.7 32 42-73 689-720 (1189)
203 PF12921 ATP13: Mitochondrial 97.4 0.0057 1.2E-07 41.2 10.1 51 215-265 47-98 (126)
204 KOG1538 Uncharacterized conser 97.3 0.04 8.6E-07 47.1 16.6 38 29-69 619-656 (1081)
205 PF03704 BTAD: Bacterial trans 97.3 0.0023 5.1E-08 44.7 8.6 69 83-152 65-138 (146)
206 PF12921 ATP13: Mitochondrial 97.3 0.0064 1.4E-07 41.0 10.1 46 113-158 50-96 (126)
207 KOG0550 Molecular chaperone (D 97.3 0.029 6.3E-07 45.1 14.8 153 124-285 178-351 (486)
208 PF13371 TPR_9: Tetratricopept 97.2 0.0038 8.2E-08 37.6 7.8 54 194-248 4-57 (73)
209 PF13371 TPR_9: Tetratricopept 97.2 0.0035 7.7E-08 37.7 7.6 55 54-109 4-58 (73)
210 KOG0550 Molecular chaperone (D 97.2 0.085 1.8E-06 42.6 19.1 155 89-249 178-350 (486)
211 KOG2041 WD40 repeat protein [G 97.2 0.045 9.9E-07 47.2 15.3 85 184-281 851-936 (1189)
212 PF13424 TPR_12: Tetratricopep 97.2 0.0013 2.9E-08 40.3 5.1 61 187-247 7-73 (78)
213 smart00299 CLH Clathrin heavy 97.1 0.034 7.4E-07 38.5 12.6 126 118-266 10-136 (140)
214 PF10300 DUF3808: Protein of u 97.1 0.13 2.7E-06 43.7 18.0 162 120-284 193-376 (468)
215 PF13281 DUF4071: Domain of un 97.0 0.14 3E-06 41.5 20.6 164 120-285 146-335 (374)
216 PF13281 DUF4071: Domain of un 96.9 0.15 3.3E-06 41.3 20.8 167 81-249 142-334 (374)
217 KOG1538 Uncharacterized conser 96.9 0.075 1.6E-06 45.5 14.6 258 6-285 552-847 (1081)
218 COG1729 Uncharacterized protei 96.9 0.03 6.4E-07 42.6 11.2 87 197-283 153-243 (262)
219 PRK15331 chaperone protein Sic 96.9 0.076 1.6E-06 37.3 12.0 88 54-143 46-133 (165)
220 PF10300 DUF3808: Protein of u 96.8 0.23 5E-06 42.2 17.1 115 95-212 248-374 (468)
221 PF04840 Vps16_C: Vps16, C-ter 96.8 0.19 4.2E-06 40.1 21.9 110 117-246 179-288 (319)
222 KOG1130 Predicted G-alpha GTPa 96.8 0.011 2.4E-07 47.5 8.1 229 53-282 25-302 (639)
223 PF08631 SPO22: Meiosis protei 96.7 0.2 4.4E-06 39.3 24.2 224 56-282 4-273 (278)
224 KOG2280 Vacuolar assembly/sort 96.7 0.37 8E-06 42.1 19.9 91 182-282 681-771 (829)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.063 1.4E-06 44.2 12.2 66 7-74 72-141 (453)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.048 1E-06 44.8 11.5 65 148-214 73-141 (453)
227 PF04053 Coatomer_WDAD: Coatom 96.6 0.14 3.1E-06 42.9 14.2 154 22-210 273-427 (443)
228 KOG4570 Uncharacterized conser 96.6 0.094 2E-06 40.8 11.7 103 181-285 60-165 (418)
229 KOG0543 FKBP-type peptidyl-pro 96.5 0.18 3.8E-06 40.8 13.3 124 158-284 216-355 (397)
230 PF09205 DUF1955: Domain of un 96.5 0.13 2.8E-06 34.6 13.2 58 227-285 93-150 (161)
231 KOG1920 IkappaB kinase complex 96.5 0.7 1.5E-05 42.8 20.5 83 156-248 945-1027(1265)
232 PF13512 TPR_18: Tetratricopep 96.5 0.16 3.4E-06 34.9 11.3 52 197-248 22-75 (142)
233 PF08631 SPO22: Meiosis protei 96.4 0.33 7.1E-06 38.1 24.9 223 21-247 4-273 (278)
234 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.42 9.2E-06 39.4 17.3 146 80-230 397-545 (660)
235 PF07035 Mic1: Colon cancer-as 96.4 0.2 4.4E-06 35.6 13.4 57 224-284 93-149 (167)
236 COG1729 Uncharacterized protei 96.4 0.13 2.8E-06 39.2 11.4 97 152-249 144-244 (262)
237 KOG3941 Intermediate in Toll s 96.4 0.053 1.2E-06 41.5 9.2 91 42-132 64-175 (406)
238 KOG4555 TPR repeat-containing 96.4 0.16 3.5E-06 34.1 11.6 89 195-285 53-145 (175)
239 KOG3941 Intermediate in Toll s 96.4 0.039 8.5E-07 42.2 8.5 101 8-108 65-187 (406)
240 PF04053 Coatomer_WDAD: Coatom 96.3 0.24 5.2E-06 41.6 13.9 130 82-244 297-426 (443)
241 smart00299 CLH Clathrin heavy 96.3 0.21 4.5E-06 34.6 15.7 125 84-231 11-136 (140)
242 COG3118 Thioredoxin domain-con 96.2 0.4 8.6E-06 37.2 16.1 140 125-269 144-286 (304)
243 COG4105 ComL DNA uptake lipopr 96.2 0.37 8.1E-06 36.6 20.3 79 46-125 36-116 (254)
244 COG3118 Thioredoxin domain-con 96.2 0.43 9.2E-06 37.0 15.7 137 158-297 142-285 (304)
245 KOG2610 Uncharacterized conser 96.2 0.26 5.6E-06 38.9 12.1 153 92-246 115-273 (491)
246 KOG2280 Vacuolar assembly/sort 96.1 0.85 1.8E-05 40.1 19.8 117 150-285 684-800 (829)
247 KOG2114 Vacuolar assembly/sort 96.1 0.72 1.6E-05 41.0 15.7 175 16-211 340-516 (933)
248 KOG2114 Vacuolar assembly/sort 96.1 0.3 6.5E-06 43.3 13.4 177 48-247 337-517 (933)
249 KOG4570 Uncharacterized conser 96.1 0.073 1.6E-06 41.4 8.7 105 4-110 58-165 (418)
250 PF09205 DUF1955: Domain of un 96.1 0.25 5.4E-06 33.3 16.7 68 184-252 85-152 (161)
251 COG3898 Uncharacterized membra 96.0 0.68 1.5E-05 37.5 25.4 249 23-284 97-392 (531)
252 KOG0543 FKBP-type peptidyl-pro 96.0 0.27 5.9E-06 39.7 11.8 91 88-179 216-320 (397)
253 KOG1941 Acetylcholine receptor 95.9 0.54 1.2E-05 37.6 12.9 125 156-281 128-272 (518)
254 KOG2610 Uncharacterized conser 95.9 0.45 9.8E-06 37.6 12.4 153 126-281 114-273 (491)
255 COG3629 DnrI DNA-binding trans 95.7 0.25 5.3E-06 38.4 10.5 80 80-160 153-237 (280)
256 KOG4555 TPR repeat-containing 95.7 0.36 7.9E-06 32.5 11.2 91 54-145 52-145 (175)
257 KOG1585 Protein required for f 95.7 0.65 1.4E-05 35.1 17.8 206 47-278 33-250 (308)
258 COG3629 DnrI DNA-binding trans 95.6 0.23 5E-06 38.5 9.9 76 188-264 156-236 (280)
259 PF13428 TPR_14: Tetratricopep 95.6 0.071 1.5E-06 28.3 5.3 23 226-248 7-29 (44)
260 PF13428 TPR_14: Tetratricopep 95.6 0.061 1.3E-06 28.5 5.0 27 48-74 4-30 (44)
261 COG3898 Uncharacterized membra 95.6 1 2.2E-05 36.6 25.1 230 8-249 116-392 (531)
262 KOG1585 Protein required for f 95.5 0.75 1.6E-05 34.7 15.3 204 13-243 34-250 (308)
263 COG5107 RNA14 Pre-mRNA 3'-end 95.5 1.2 2.6E-05 36.9 24.2 95 186-283 398-494 (660)
264 COG0457 NrfG FOG: TPR repeat [ 95.4 0.8 1.7E-05 34.1 28.6 201 81-284 60-265 (291)
265 COG4105 ComL DNA uptake lipopr 95.2 1 2.2E-05 34.3 20.0 80 80-161 35-117 (254)
266 PF04184 ST7: ST7 protein; In 95.1 1.7 3.7E-05 36.5 17.2 97 189-285 263-376 (539)
267 PF10602 RPN7: 26S proteasome 95.1 0.37 8.1E-06 34.9 9.2 60 188-247 39-100 (177)
268 PF13176 TPR_7: Tetratricopept 95.0 0.077 1.7E-06 26.7 4.1 25 258-282 2-26 (36)
269 PF04184 ST7: ST7 protein; In 95.0 1.4 3.1E-05 37.0 13.0 67 218-284 257-324 (539)
270 PF10602 RPN7: 26S proteasome 94.9 0.83 1.8E-05 33.1 10.6 60 47-106 38-99 (177)
271 PF13170 DUF4003: Protein of u 94.9 1.5 3.2E-05 34.8 21.1 22 203-224 200-221 (297)
272 PF00637 Clathrin: Region in C 94.8 0.044 9.5E-07 38.1 3.8 84 121-211 13-96 (143)
273 PF13170 DUF4003: Protein of u 94.7 1.7 3.8E-05 34.4 18.7 132 61-194 78-226 (297)
274 PF13176 TPR_7: Tetratricopept 94.6 0.1 2.2E-06 26.2 3.9 26 222-247 1-26 (36)
275 cd00923 Cyt_c_Oxidase_Va Cytoc 94.6 0.5 1.1E-05 29.8 7.5 63 200-263 22-84 (103)
276 PF02259 FAT: FAT domain; Int 94.4 2.2 4.9E-05 34.7 16.2 66 218-283 144-212 (352)
277 PF02284 COX5A: Cytochrome c o 94.4 0.43 9.2E-06 30.5 6.9 61 202-263 27-87 (108)
278 PF07035 Mic1: Colon cancer-as 94.4 1.3 2.8E-05 31.6 15.7 26 71-96 20-45 (167)
279 COG4649 Uncharacterized protei 94.3 1.3 2.8E-05 31.6 13.5 135 79-214 58-196 (221)
280 cd00923 Cyt_c_Oxidase_Va Cytoc 94.2 0.53 1.1E-05 29.7 6.9 46 98-143 25-70 (103)
281 COG0457 NrfG FOG: TPR repeat [ 94.2 1.7 3.7E-05 32.3 25.9 224 24-249 37-265 (291)
282 KOG1941 Acetylcholine receptor 94.1 1.7 3.6E-05 35.0 11.1 165 47-211 85-272 (518)
283 PF13762 MNE1: Mitochondrial s 93.9 0.97 2.1E-05 31.3 8.5 88 47-134 41-134 (145)
284 PF02284 COX5A: Cytochrome c o 93.8 0.64 1.4E-05 29.7 6.9 47 98-144 28-74 (108)
285 PRK11906 transcriptional regul 93.7 3.6 7.9E-05 34.4 16.3 111 96-211 320-433 (458)
286 PF13431 TPR_17: Tetratricopep 93.6 0.11 2.3E-06 25.8 2.7 21 79-99 12-32 (34)
287 PF07079 DUF1347: Protein of u 93.3 4.2 9E-05 33.9 24.0 200 80-285 298-525 (549)
288 PRK11906 transcriptional regul 93.3 4.3 9.3E-05 34.0 16.7 110 130-245 319-432 (458)
289 PF13512 TPR_18: Tetratricopep 93.1 2 4.3E-05 29.6 12.1 68 127-195 22-92 (142)
290 PF11207 DUF2989: Protein of u 93.1 1.6 3.6E-05 32.0 9.0 79 125-205 117-198 (203)
291 PF13374 TPR_10: Tetratricopep 93.1 0.34 7.4E-06 24.9 4.4 28 256-283 3-30 (42)
292 PF13431 TPR_17: Tetratricopep 93.1 0.15 3.1E-06 25.3 2.7 20 220-239 13-32 (34)
293 PF11207 DUF2989: Protein of u 92.9 2 4.4E-05 31.5 9.2 72 202-274 123-197 (203)
294 KOG1920 IkappaB kinase complex 92.7 9.1 0.0002 36.1 19.1 43 195-246 949-991 (1265)
295 PF13929 mRNA_stabil: mRNA sta 92.6 4.1 8.8E-05 31.9 13.8 144 48-194 134-287 (292)
296 COG4649 Uncharacterized protei 92.5 2.9 6.3E-05 29.9 13.5 135 114-249 58-196 (221)
297 KOG0276 Vesicle coat complex C 92.4 6.9 0.00015 34.0 12.7 98 161-279 648-745 (794)
298 PRK09687 putative lyase; Provi 92.3 4.6 9.9E-05 31.8 26.2 220 42-284 34-263 (280)
299 PF00515 TPR_1: Tetratricopept 92.3 0.57 1.2E-05 22.9 4.4 27 257-283 3-29 (34)
300 TIGR03504 FimV_Cterm FimV C-te 92.3 0.8 1.7E-05 24.3 4.9 24 262-285 6-29 (44)
301 PF13374 TPR_10: Tetratricopep 92.1 0.51 1.1E-05 24.2 4.3 29 220-248 2-30 (42)
302 PF00515 TPR_1: Tetratricopept 92.0 0.59 1.3E-05 22.8 4.2 27 222-248 3-29 (34)
303 COG2976 Uncharacterized protei 91.9 3.7 8.1E-05 30.0 12.3 21 264-284 168-188 (207)
304 PF13929 mRNA_stabil: mRNA sta 91.9 5 0.00011 31.4 13.7 146 118-266 134-289 (292)
305 COG3947 Response regulator con 91.8 5.2 0.00011 31.3 13.9 183 97-283 104-341 (361)
306 PF07719 TPR_2: Tetratricopept 91.8 0.7 1.5E-05 22.4 4.4 28 257-284 3-30 (34)
307 PF09613 HrpB1_HrpK: Bacterial 91.8 3.4 7.3E-05 29.2 12.5 13 128-140 57-69 (160)
308 PF09613 HrpB1_HrpK: Bacterial 91.6 3.6 7.7E-05 29.1 13.5 52 56-109 21-73 (160)
309 PF07163 Pex26: Pex26 protein; 91.4 4.9 0.00011 31.2 10.0 87 87-173 90-181 (309)
310 COG4785 NlpI Lipoprotein NlpI, 91.3 4.9 0.00011 30.0 18.1 170 115-295 99-277 (297)
311 PF07719 TPR_2: Tetratricopept 91.3 0.77 1.7E-05 22.2 4.2 27 222-248 3-29 (34)
312 KOG0276 Vesicle coat complex C 91.2 9.6 0.00021 33.2 12.5 150 22-211 598-747 (794)
313 PF13181 TPR_8: Tetratricopept 91.1 0.91 2E-05 22.1 4.4 27 257-283 3-29 (34)
314 PF07079 DUF1347: Protein of u 90.7 9.1 0.0002 32.1 25.3 88 193-281 387-488 (549)
315 PRK15180 Vi polysaccharide bio 90.4 9.9 0.00022 32.1 14.1 126 51-180 295-421 (831)
316 PF07163 Pex26: Pex26 protein; 90.4 5.3 0.00012 31.0 9.4 92 47-138 85-181 (309)
317 TIGR03504 FimV_Cterm FimV C-te 90.2 0.91 2E-05 24.1 3.9 24 226-249 5-28 (44)
318 PF00637 Clathrin: Region in C 90.2 0.1 2.2E-06 36.2 0.4 46 55-100 17-62 (143)
319 COG4455 ImpE Protein of avirul 90.2 4.2 9.1E-05 30.4 8.4 77 47-124 3-81 (273)
320 KOG4077 Cytochrome c oxidase, 89.8 4.2 9.2E-05 27.3 7.4 59 203-262 67-125 (149)
321 PF04097 Nic96: Nup93/Nic96; 89.6 13 0.00028 33.1 12.7 90 51-145 264-357 (613)
322 PF13174 TPR_6: Tetratricopept 89.5 0.84 1.8E-05 21.9 3.4 25 260-284 5-29 (33)
323 KOG4234 TPR repeat-containing 89.5 6.8 0.00015 28.9 9.7 96 157-256 102-202 (271)
324 COG4455 ImpE Protein of avirul 89.3 4 8.8E-05 30.5 7.8 76 13-89 4-81 (273)
325 PF14689 SPOB_a: Sensor_kinase 89.2 1.8 3.8E-05 25.0 4.9 47 236-284 6-52 (62)
326 PF07721 TPR_4: Tetratricopept 89.0 0.76 1.7E-05 21.0 2.8 20 260-279 6-25 (26)
327 PHA02875 ankyrin repeat protei 88.9 13 0.00028 31.2 11.9 214 17-256 6-231 (413)
328 PF13174 TPR_6: Tetratricopept 88.9 0.98 2.1E-05 21.6 3.4 25 225-249 5-29 (33)
329 KOG4077 Cytochrome c oxidase, 88.8 4.3 9.3E-05 27.3 6.9 59 98-157 67-125 (149)
330 KOG1550 Extracellular protein 88.7 16 0.00035 32.1 24.4 250 20-285 259-539 (552)
331 PF06552 TOM20_plant: Plant sp 88.4 7.7 0.00017 28.0 8.9 109 26-145 7-137 (186)
332 PRK15180 Vi polysaccharide bio 88.3 15 0.00032 31.2 14.7 120 91-214 300-420 (831)
333 KOG1586 Protein required for f 88.1 9.8 0.00021 28.9 11.7 17 90-106 24-40 (288)
334 KOG2066 Vacuolar assembly/sort 88.1 20 0.00043 32.4 19.8 56 17-74 363-421 (846)
335 COG1747 Uncharacterized N-term 88.0 16 0.00035 31.3 20.5 165 8-179 64-234 (711)
336 PF13181 TPR_8: Tetratricopept 87.8 2 4.4E-05 20.7 4.2 27 222-248 3-29 (34)
337 TIGR02561 HrpB1_HrpK type III 87.7 7.4 0.00016 27.1 11.4 17 127-143 56-72 (153)
338 KOG1550 Extracellular protein 87.5 19 0.00042 31.7 22.3 212 61-285 228-469 (552)
339 PF10579 Rapsyn_N: Rapsyn N-te 87.4 3.5 7.5E-05 25.1 5.4 46 232-277 18-65 (80)
340 KOG4648 Uncharacterized conser 86.5 3.2 6.9E-05 33.2 6.3 55 157-213 104-159 (536)
341 KOG2908 26S proteasome regulat 85.8 17 0.00037 29.3 10.1 57 157-213 82-143 (380)
342 KOG4234 TPR repeat-containing 85.6 12 0.00027 27.6 9.9 87 91-179 106-197 (271)
343 KOG1258 mRNA processing protei 85.0 25 0.00055 30.6 20.1 120 151-275 298-420 (577)
344 COG2976 Uncharacterized protei 84.9 13 0.00029 27.3 13.8 90 124-215 98-189 (207)
345 COG2909 MalT ATP-dependent tra 84.9 32 0.00069 31.7 23.1 193 90-285 425-648 (894)
346 TIGR02561 HrpB1_HrpK type III 84.8 11 0.00024 26.3 12.2 50 58-109 23-73 (153)
347 PF11846 DUF3366: Domain of un 84.7 9.3 0.0002 28.1 7.9 34 216-249 140-173 (193)
348 KOG1464 COP9 signalosome, subu 83.8 19 0.0004 28.1 17.1 89 189-278 149-254 (440)
349 PF10345 Cohesin_load: Cohesin 83.6 32 0.0007 30.7 18.8 182 29-211 40-251 (608)
350 PRK09687 putative lyase; Provi 83.4 20 0.00044 28.3 25.8 233 9-266 36-278 (280)
351 PRK11619 lytic murein transgly 83.2 35 0.00075 30.8 26.5 126 163-291 254-382 (644)
352 PF02259 FAT: FAT domain; Int 82.5 25 0.00054 28.6 23.9 192 16-213 4-212 (352)
353 cd00280 TRFH Telomeric Repeat 82.0 17 0.00037 26.4 9.1 22 227-248 118-139 (200)
354 PF11848 DUF3368: Domain of un 81.3 6.6 0.00014 21.2 4.8 31 232-262 14-44 (48)
355 KOG2297 Predicted translation 81.0 26 0.00057 27.9 13.6 175 42-239 162-340 (412)
356 cd08819 CARD_MDA5_2 Caspase ac 81.0 11 0.00024 23.5 7.2 65 204-274 21-85 (88)
357 KOG2063 Vacuolar assembly/sort 80.7 49 0.0011 30.8 14.9 166 118-283 507-712 (877)
358 PF10579 Rapsyn_N: Rapsyn N-te 80.5 6.9 0.00015 23.8 4.7 46 57-102 18-65 (80)
359 KOG4507 Uncharacterized conser 80.3 8 0.00017 33.6 6.6 91 194-285 616-706 (886)
360 KOG4648 Uncharacterized conser 80.0 23 0.0005 28.7 8.6 89 123-213 105-193 (536)
361 PF11846 DUF3366: Domain of un 79.9 13 0.00027 27.4 7.1 54 161-214 119-173 (193)
362 COG1747 Uncharacterized N-term 79.3 41 0.00088 29.0 25.1 180 78-265 64-249 (711)
363 PF04097 Nic96: Nup93/Nic96; 79.2 48 0.001 29.8 17.2 58 16-74 117-181 (613)
364 smart00028 TPR Tetratricopepti 78.8 4.7 0.0001 18.2 3.4 25 258-282 4-28 (34)
365 PRK10564 maltose regulon perip 78.4 5.6 0.00012 31.3 4.9 42 218-259 254-296 (303)
366 COG5159 RPN6 26S proteasome re 78.3 31 0.00068 27.2 11.0 23 260-282 130-152 (421)
367 PF14689 SPOB_a: Sensor_kinase 78.3 7.9 0.00017 22.3 4.4 22 225-246 28-49 (62)
368 PHA02875 ankyrin repeat protei 78.2 40 0.00086 28.3 15.0 196 3-220 23-230 (413)
369 PF10475 DUF2450: Protein of u 77.6 34 0.00074 27.2 10.8 87 149-240 126-217 (291)
370 COG0735 Fur Fe2+/Zn2+ uptake r 77.4 16 0.00035 25.5 6.6 58 36-94 12-69 (145)
371 KOG2659 LisH motif-containing 77.2 29 0.00063 26.2 9.3 22 191-212 70-91 (228)
372 COG0735 Fur Fe2+/Zn2+ uptake r 76.3 20 0.00043 25.0 6.8 60 174-234 10-69 (145)
373 COG4785 NlpI Lipoprotein NlpI, 76.3 31 0.00067 26.1 17.6 177 61-250 81-267 (297)
374 cd00280 TRFH Telomeric Repeat 76.0 28 0.0006 25.4 7.3 48 96-143 85-139 (200)
375 COG5159 RPN6 26S proteasome re 75.8 37 0.00081 26.8 10.5 53 86-138 9-68 (421)
376 PRK10564 maltose regulon perip 75.4 8.8 0.00019 30.3 5.2 29 49-77 261-289 (303)
377 PF10366 Vps39_1: Vacuolar sor 75.1 21 0.00045 23.5 7.1 27 222-248 41-67 (108)
378 PF09986 DUF2225: Uncharacteri 75.0 33 0.00072 25.8 9.7 64 222-285 120-195 (214)
379 COG5187 RPN7 26S proteasome re 74.8 40 0.00087 26.7 10.7 100 184-285 114-222 (412)
380 KOG1586 Protein required for f 74.7 36 0.00077 26.1 18.2 58 191-249 160-224 (288)
381 COG3947 Response regulator con 74.2 42 0.00091 26.6 16.5 159 96-258 149-356 (361)
382 COG5108 RPO41 Mitochondrial DN 73.6 59 0.0013 29.2 9.9 75 155-232 33-115 (1117)
383 KOG4567 GTPase-activating prot 73.6 31 0.00068 27.5 7.6 73 205-282 263-345 (370)
384 PF10345 Cohesin_load: Cohesin 73.2 70 0.0015 28.7 26.6 163 13-176 62-251 (608)
385 COG5108 RPO41 Mitochondrial DN 72.5 41 0.0009 30.0 8.8 47 15-61 33-81 (1117)
386 COG2909 MalT ATP-dependent tra 72.2 84 0.0018 29.2 22.9 223 56-281 426-685 (894)
387 PF11848 DUF3368: Domain of un 72.0 14 0.00029 20.0 5.1 23 95-117 17-39 (48)
388 KOG0687 26S proteasome regulat 71.6 52 0.0011 26.6 11.9 155 129-285 36-211 (393)
389 PF11663 Toxin_YhaV: Toxin wit 71.3 4.3 9.3E-05 27.6 2.4 23 64-88 114-136 (140)
390 PF11663 Toxin_YhaV: Toxin wit 71.2 5.7 0.00012 27.0 2.9 31 127-159 107-137 (140)
391 PF12862 Apc5: Anaphase-promot 69.9 25 0.00054 22.2 6.9 19 265-283 51-69 (94)
392 PF10366 Vps39_1: Vacuolar sor 69.7 29 0.00062 22.8 6.7 26 83-108 42-67 (108)
393 KOG4567 GTPase-activating prot 69.4 41 0.0009 26.8 7.5 71 100-175 263-343 (370)
394 PF11817 Foie-gras_1: Foie gra 69.2 43 0.00093 25.9 7.8 60 223-282 181-245 (247)
395 PF12862 Apc5: Anaphase-promot 68.8 27 0.00058 22.1 6.9 53 196-248 9-69 (94)
396 PF10475 DUF2450: Protein of u 68.5 55 0.0012 26.0 8.5 116 50-176 103-223 (291)
397 PF11817 Foie-gras_1: Foie gra 68.5 37 0.0008 26.2 7.4 60 188-247 181-245 (247)
398 PF12926 MOZART2: Mitotic-spin 67.6 27 0.00059 21.7 7.8 43 101-143 29-71 (88)
399 KOG1258 mRNA processing protei 66.9 90 0.0019 27.5 19.6 184 45-234 297-489 (577)
400 PF00244 14-3-3: 14-3-3 protei 66.8 56 0.0012 25.1 9.6 49 237-285 143-199 (236)
401 TIGR02508 type_III_yscG type I 66.6 32 0.0007 22.2 7.7 78 166-250 21-98 (115)
402 PF07575 Nucleopor_Nup85: Nup8 66.1 27 0.00058 30.9 6.8 21 199-219 509-529 (566)
403 PF14669 Asp_Glu_race_2: Putat 65.7 52 0.0011 24.3 12.5 56 155-210 137-206 (233)
404 PF07575 Nucleopor_Nup85: Nup8 65.6 24 0.00052 31.2 6.5 32 232-263 507-538 (566)
405 KOG0545 Aryl-hydrocarbon recep 64.4 65 0.0014 25.0 10.6 62 223-285 233-294 (329)
406 cd08315 Death_TRAILR_DR4_DR5 D 63.2 37 0.0008 21.7 5.4 50 236-287 47-96 (96)
407 PF02847 MA3: MA3 domain; Int 62.0 40 0.00086 22.0 5.7 19 192-210 9-27 (113)
408 PF06552 TOM20_plant: Plant sp 61.9 60 0.0013 23.7 8.5 109 61-180 7-137 (186)
409 COG4003 Uncharacterized protei 61.8 34 0.00073 21.0 4.6 24 262-285 38-61 (98)
410 KOG1464 COP9 signalosome, subu 61.5 78 0.0017 24.9 21.4 203 3-206 19-252 (440)
411 KOG4279 Serine/threonine prote 60.2 1.4E+02 0.0031 27.4 14.4 76 66-144 184-272 (1226)
412 PRK09857 putative transposase; 60.2 87 0.0019 25.0 8.7 12 24-35 19-30 (292)
413 KOG1839 Uncharacterized protei 59.9 1.8E+02 0.0039 28.5 11.3 154 91-244 943-1123(1236)
414 cd07153 Fur_like Ferric uptake 59.7 28 0.0006 23.0 4.7 43 52-94 7-49 (116)
415 PF09670 Cas_Cas02710: CRISPR- 59.2 1.1E+02 0.0023 25.7 11.7 52 126-178 142-197 (379)
416 cd08819 CARD_MDA5_2 Caspase ac 59.0 42 0.00091 21.0 7.0 14 129-142 50-63 (88)
417 PF09670 Cas_Cas02710: CRISPR- 58.8 1.1E+02 0.0023 25.6 10.5 56 88-144 139-198 (379)
418 TIGR02508 type_III_yscG type I 58.7 48 0.001 21.5 8.5 51 229-285 48-98 (115)
419 KOG2297 Predicted translation 58.6 95 0.0021 24.9 15.7 163 75-275 161-341 (412)
420 PRK11639 zinc uptake transcrip 58.3 67 0.0015 23.1 7.0 63 175-238 16-78 (169)
421 KOG2908 26S proteasome regulat 58.1 1E+02 0.0022 25.1 10.2 54 125-178 85-143 (380)
422 KOG2582 COP9 signalosome, subu 57.6 1.1E+02 0.0023 25.3 16.0 56 230-285 287-346 (422)
423 cd07153 Fur_like Ferric uptake 57.3 30 0.00065 22.8 4.5 44 192-235 7-50 (116)
424 PF07678 A2M_comp: A-macroglob 56.9 73 0.0016 24.6 7.1 45 97-143 116-160 (246)
425 KOG1308 Hsp70-interacting prot 56.8 11 0.00024 30.3 2.6 91 57-150 126-217 (377)
426 PRK09462 fur ferric uptake reg 56.4 66 0.0014 22.4 7.0 62 175-237 7-69 (148)
427 PF13762 MNE1: Mitochondrial s 55.8 68 0.0015 22.4 11.8 101 69-169 26-134 (145)
428 PF00244 14-3-3: 14-3-3 protei 55.5 93 0.002 23.9 10.5 56 51-106 7-63 (236)
429 PF09454 Vps23_core: Vps23 cor 55.4 38 0.00082 19.8 4.1 45 45-90 8-52 (65)
430 KOG4507 Uncharacterized conser 55.1 1.5E+02 0.0034 26.3 9.7 53 90-143 652-704 (886)
431 PF08424 NRDE-2: NRDE-2, neces 55.1 1.1E+02 0.0024 24.7 18.0 23 194-216 163-185 (321)
432 PRK08691 DNA polymerase III su 55.0 1.7E+02 0.0037 26.8 12.8 84 167-253 181-278 (709)
433 KOG0890 Protein kinase of the 54.5 2.9E+02 0.0064 29.4 21.4 63 220-285 1670-1732(2382)
434 PF01475 FUR: Ferric uptake re 54.0 24 0.00052 23.5 3.6 43 192-234 14-56 (120)
435 PF10858 DUF2659: Protein of u 53.6 81 0.0018 22.6 6.4 35 266-300 104-138 (220)
436 PRK07003 DNA polymerase III su 53.0 2E+02 0.0043 26.9 12.7 83 167-252 181-277 (830)
437 smart00638 LPD_N Lipoprotein N 53.0 1.7E+02 0.0036 26.1 23.3 198 44-248 309-524 (574)
438 KOG2396 HAT (Half-A-TPR) repea 52.8 1.6E+02 0.0034 25.6 22.4 100 181-283 455-558 (568)
439 KOG2066 Vacuolar assembly/sort 52.7 1.9E+02 0.0041 26.7 13.8 71 91-167 367-440 (846)
440 PF01475 FUR: Ferric uptake re 52.6 29 0.00062 23.1 3.8 45 50-94 12-56 (120)
441 PF14853 Fis1_TPR_C: Fis1 C-te 52.3 40 0.00087 18.7 5.9 22 88-109 9-30 (53)
442 KOG0991 Replication factor C, 51.0 1.1E+02 0.0025 23.6 16.6 102 160-265 169-282 (333)
443 COG0790 FOG: TPR repeat, SEL1 49.9 1.3E+02 0.0027 23.8 22.3 123 130-259 128-276 (292)
444 TIGR03362 VI_chp_7 type VI sec 49.9 95 0.0021 24.9 6.8 59 227-285 220-280 (301)
445 PF11838 ERAP1_C: ERAP1-like C 49.6 1.4E+02 0.0029 24.0 18.3 61 151-214 170-230 (324)
446 PF05944 Phage_term_smal: Phag 49.3 63 0.0014 22.2 5.0 34 218-252 47-80 (132)
447 PRK13800 putative oxidoreducta 48.6 2.5E+02 0.0054 26.8 24.9 128 148-285 754-882 (897)
448 PF11838 ERAP1_C: ERAP1-like C 48.6 1.4E+02 0.0031 23.9 18.1 111 96-210 146-262 (324)
449 PRK11639 zinc uptake transcrip 48.3 1E+02 0.0022 22.2 7.6 37 128-164 38-74 (169)
450 KOG0686 COP9 signalosome, subu 48.3 1.7E+02 0.0036 24.7 14.1 175 81-263 151-352 (466)
451 PRK09462 fur ferric uptake reg 47.5 95 0.0021 21.7 7.7 35 130-164 32-66 (148)
452 PF08424 NRDE-2: NRDE-2, neces 47.3 1.5E+02 0.0033 24.0 17.4 30 222-251 156-185 (321)
453 KOG0376 Serine-threonine phosp 46.9 93 0.002 26.6 6.4 101 124-230 13-115 (476)
454 PRK13342 recombination factor 46.6 1.8E+02 0.0039 24.6 19.6 67 188-254 230-304 (413)
455 KOG3364 Membrane protein invol 45.9 1E+02 0.0022 21.4 9.0 67 183-249 30-100 (149)
456 PF03745 DUF309: Domain of unk 45.7 59 0.0013 18.8 6.0 49 230-278 9-62 (62)
457 smart00386 HAT HAT (Half-A-TPR 45.5 33 0.00071 15.7 4.0 14 235-248 2-15 (33)
458 KOG1114 Tripeptidyl peptidase 45.3 2.8E+02 0.0061 26.5 15.0 70 201-270 1212-1282(1304)
459 PF13934 ELYS: Nuclear pore co 44.6 1.4E+02 0.003 22.8 14.5 106 118-234 79-186 (226)
460 PF12926 MOZART2: Mitotic-spin 44.6 78 0.0017 19.8 8.2 44 241-284 29-72 (88)
461 KOG1308 Hsp70-interacting prot 44.4 18 0.00039 29.2 2.0 90 92-184 126-216 (377)
462 PRK11905 bifunctional proline 44.3 1.2E+02 0.0025 30.0 7.6 145 98-252 51-201 (1208)
463 KOG3364 Membrane protein invol 44.2 1.1E+02 0.0023 21.3 10.1 68 42-109 29-100 (149)
464 COG0790 FOG: TPR repeat, SEL1 43.3 1.6E+02 0.0035 23.2 23.9 147 129-285 91-267 (292)
465 PF14669 Asp_Glu_race_2: Putat 43.3 1.4E+02 0.003 22.3 15.2 56 190-245 137-206 (233)
466 PRK14958 DNA polymerase III su 43.2 2.3E+02 0.005 24.9 11.5 73 179-254 194-279 (509)
467 PRK14962 DNA polymerase III su 43.0 2.2E+02 0.0049 24.7 12.8 92 81-173 245-344 (472)
468 KOG0403 Neoplastic transformat 42.9 2.2E+02 0.0047 24.5 19.0 71 223-294 512-584 (645)
469 KOG4642 Chaperone-dependent E3 42.4 1.6E+02 0.0035 22.8 11.2 117 125-245 20-142 (284)
470 PRK13342 recombination factor 42.0 2.2E+02 0.0047 24.2 18.4 36 128-163 243-278 (413)
471 KOG0376 Serine-threonine phosp 41.4 98 0.0021 26.5 5.8 104 17-125 11-115 (476)
472 PF02607 B12-binding_2: B12 bi 41.4 62 0.0013 19.4 3.8 33 233-265 14-46 (79)
473 KOG0686 COP9 signalosome, subu 41.4 2.2E+02 0.0047 24.1 15.3 91 47-139 152-253 (466)
474 smart00544 MA3 Domain in DAP-5 41.3 1E+02 0.0022 20.1 10.9 21 191-211 8-28 (113)
475 PRK12798 chemotaxis protein; R 41.2 2.2E+02 0.0048 24.1 20.6 189 92-285 124-325 (421)
476 PF02847 MA3: MA3 domain; Int 41.2 1E+02 0.0022 20.1 8.1 62 14-77 6-69 (113)
477 PRK13341 recombination factor 41.0 3E+02 0.0065 25.6 17.3 56 127-182 270-330 (725)
478 PRK10941 hypothetical protein; 40.6 1.8E+02 0.0039 22.9 10.6 60 119-179 185-244 (269)
479 PRK09857 putative transposase; 40.4 1.9E+02 0.0042 23.1 10.1 63 224-287 210-272 (292)
480 cd08315 Death_TRAILR_DR4_DR5 D 40.3 99 0.0021 19.8 5.0 48 61-110 47-94 (96)
481 PF04090 RNA_pol_I_TF: RNA pol 39.7 1.6E+02 0.0034 22.0 7.3 28 187-214 43-70 (199)
482 COG5187 RPN7 26S proteasome re 39.5 2E+02 0.0043 23.1 12.9 98 114-213 114-220 (412)
483 PRK14956 DNA polymerase III su 39.4 2.6E+02 0.0056 24.4 11.4 38 219-256 247-284 (484)
484 KOG1839 Uncharacterized protei 39.1 4E+02 0.0086 26.4 11.6 155 53-207 940-1121(1236)
485 PF12793 SgrR_N: Sugar transpo 39.0 1.2E+02 0.0025 20.3 8.0 60 218-279 17-94 (115)
486 KOG2659 LisH motif-containing 38.7 1.8E+02 0.0038 22.3 10.4 97 42-140 23-128 (228)
487 PF09868 DUF2095: Uncharacteri 38.4 1.2E+02 0.0026 20.2 5.3 30 87-117 68-97 (128)
488 COG2405 Predicted nucleic acid 38.3 77 0.0017 21.9 4.0 32 232-263 121-152 (157)
489 PF15297 CKAP2_C: Cytoskeleton 38.1 2.3E+02 0.0049 23.3 8.7 44 222-265 142-185 (353)
490 COG2137 OraA Uncharacterized p 37.9 1.6E+02 0.0034 21.4 12.8 39 205-245 88-126 (174)
491 cd08780 Death_TRADD Death Doma 37.5 1.1E+02 0.0023 19.3 5.9 56 221-278 33-88 (90)
492 PF12796 Ank_2: Ankyrin repeat 37.5 96 0.0021 18.8 4.9 14 21-34 5-18 (89)
493 KOG3807 Predicted membrane pro 37.0 2.3E+02 0.0051 23.2 9.6 121 26-157 232-354 (556)
494 TIGR03581 EF_0839 conserved hy 37.0 1.7E+02 0.0036 22.2 5.8 82 201-282 137-235 (236)
495 KOG3636 Uncharacterized conser 36.9 2.7E+02 0.0058 23.8 14.4 183 47-231 57-271 (669)
496 PF04090 RNA_pol_I_TF: RNA pol 36.9 1.8E+02 0.0039 21.7 7.1 28 47-74 43-70 (199)
497 TIGR01503 MthylAspMut_E methyl 36.3 2.8E+02 0.0061 23.9 8.2 113 25-147 29-166 (480)
498 PRK11904 bifunctional proline 36.1 1.8E+02 0.0039 28.3 7.4 146 98-252 49-202 (1038)
499 PF15297 CKAP2_C: Cytoskeleton 35.9 2.5E+02 0.0054 23.1 9.3 42 188-229 143-184 (353)
500 COG5116 RPN2 26S proteasome re 35.6 2.9E+02 0.0062 24.7 7.7 27 153-179 211-237 (926)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-54 Score=379.61 Aligned_cols=296 Identities=21% Similarity=0.332 Sum_probs=179.2
Q ss_pred CccCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH
Q 043969 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI 80 (300)
Q Consensus 1 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (300)
|++.|+.||..+|+.||.+|++.|+.++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 043969 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGR--SGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (300)
.+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|++|.+.|++|+..+|+.+|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 6666666666666666666666666644 34556666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 043969 159 GLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE 238 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (300)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 66666666666666666666666666666666666666666666666666666555555555566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------hHHHHHHHhhh
Q 043969 239 ACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLVSKFKR 296 (300)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~l~~~~~~ 296 (300)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.| +|..++.++.+
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 66666555555555555555555555555555555555555555555 44445544443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5e-54 Score=377.30 Aligned_cols=293 Identities=21% Similarity=0.311 Sum_probs=285.6
Q ss_pred CccCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhh--CCCCC
Q 043969 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSD--EGYAP 78 (300)
Q Consensus 1 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~ 78 (300)
|.+.|+.||..+|+.+|.+|++.|++++|+++|++|...++.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.|
T Consensus 498 M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P 577 (1060)
T PLN03218 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999986 57899
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (300)
|..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 043969 159 GLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE 238 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (300)
+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------hHHHHHHH
Q 043969 239 ACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG------KYIHLVSK 293 (300)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~l~~~ 293 (300)
|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++|.+.| +|..++..
T Consensus 738 Alelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 67777654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.1e-49 Score=340.41 Aligned_cols=287 Identities=20% Similarity=0.311 Sum_probs=239.8
Q ss_pred CccCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH
Q 043969 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI 80 (300)
Q Consensus 1 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (300)
|++.|+.||..+|+.|+..|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence 4567888888888888888888888888888888885 478888888888888888888888888888776665554
Q ss_pred -----------------------------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 043969 81 -----------------------------------LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL 125 (300)
Q Consensus 81 -----------------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (300)
.+|+.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y 300 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGY 300 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHH
Confidence 445667777888888888888888775 35788888888888
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHH
Q 043969 126 GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQ 205 (300)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 205 (300)
++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 043969 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK- 284 (300)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 284 (300)
++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+.
T Consensus 381 ~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 381 NVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 88888753 6888888888888888888888888888888888888888888888888888888888888888763
Q ss_pred C------hHHHHHHHhhhhhc
Q 043969 285 G------KYIHLVSKFKRYKR 299 (300)
Q Consensus 285 ~------~~~~l~~~~~~~~~ 299 (300)
| +|..++..+++.++
T Consensus 457 g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred CCCCCccchHhHHHHHHhcCC
Confidence 4 77888888777653
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=332.47 Aligned_cols=283 Identities=19% Similarity=0.265 Sum_probs=227.9
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCC-----------------------------------CcCHHHHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNF-----------------------------------RPFKNSYNAIL 52 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------~~~~~~~~~l~ 52 (300)
||..+||+++.+|++.|++++|+++|++|...|+ .||..+|++++
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 5666666666666666666666666666654444 44455567777
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChH
Q 043969 53 HALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPL 132 (300)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (300)
.+|++.|++++|.++|++|.+ +|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 888888888888888888753 4788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 133 AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMI 212 (300)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (300)
+|.+++..|.+.|++|+..+++.++.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|+.++|.++|++|.
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888863 688888888888888888888888888888
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---hHH
Q 043969 213 TKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES-RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG---KYI 288 (300)
Q Consensus 213 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~ 288 (300)
+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.+++++|.-.. .|.
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~ 498 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA 498 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Confidence 888888888888888888888888888888888875 5888888888888888888888888888888764322 677
Q ss_pred HHHHHhhhhh
Q 043969 289 HLVSKFKRYK 298 (300)
Q Consensus 289 ~l~~~~~~~~ 298 (300)
+++.+++..+
T Consensus 499 ~Ll~a~~~~g 508 (697)
T PLN03081 499 ALLTACRIHK 508 (697)
T ss_pred HHHHHHHHcC
Confidence 7777765543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.4e-47 Score=335.22 Aligned_cols=290 Identities=19% Similarity=0.258 Sum_probs=242.3
Q ss_pred ccCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh
Q 043969 2 IENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDIL 81 (300)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (300)
+..|+.||..||+.++++|++.+++..+.+++..+...|+.|+..+|+.++.+|++.|+++.|..+|++|. .||..
T Consensus 179 ~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~ 254 (857)
T PLN03077 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCI 254 (857)
T ss_pred HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcc
Confidence 34455566666665555555555555555555555555666666666777777788888888888888876 35778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (300)
+||.++.+|++.|++++|.++|++|...|+.||..||+.++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.++.+|+
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 88888888888888888888888888888889999999999999989999999999999988888999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 043969 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACT 241 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (300)
+.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 335 k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 335 SLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred hcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 9999999999999886 468889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHhhhhhc
Q 043969 242 MMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG--KYIHLVSKFKRYKR 299 (300)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~l~~~~~~~~~ 299 (300)
+++.|.+.|+.|+..+++.++.+|.+.|++++|.++|++|.+.+ .|+.++..+.+.++
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999998877 88888888876554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-46 Score=331.27 Aligned_cols=288 Identities=18% Similarity=0.236 Sum_probs=169.9
Q ss_pred cCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhh
Q 043969 3 ENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILT 82 (300)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (300)
+.|+.||..||+.++.+|++.|+.+.+.+++..+...|..||..+|+.++.+|++.|++++|.++|++|. .||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 3444444444444444444444444444444444444444444455555555555555555555555443 234455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (300)
|+.++.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555556666666666666666
Q ss_pred CCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------------------
Q 043969 163 AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL------------------------- 217 (300)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------------- 217 (300)
.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.
T Consensus 437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 6666666666666643 2344444444444444444444444444432 122
Q ss_pred ----------------------------------------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 043969 218 ----------------------------------------PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257 (300)
Q Consensus 218 ----------------------------------------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (300)
||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 3445566777777777778888888888888788888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-HcC------hHHHHHHHhhhhhc
Q 043969 258 YNTLVSNLRNAGKLAEAHEVIRHMV-EKG------KYIHLVSKFKRYKR 299 (300)
Q Consensus 258 ~~~li~~~~~~g~~~~a~~~~~~~~-~~~------~~~~l~~~~~~~~~ 299 (300)
|+.++.+|.+.|++++|.++|++|. +.| +|..++..+.+.++
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 8888888888888888888888887 344 67777777776553
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=9.1e-22 Score=161.40 Aligned_cols=259 Identities=12% Similarity=0.100 Sum_probs=127.8
Q ss_pred hccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHHhcCCHH
Q 043969 21 GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD---ILTYNIVMCAKYRLGKLD 97 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 97 (300)
...|++++|+..|.++...+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555442 22233555555555555555555555555554321111 133444555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc----HhhHHHHHHHHHhCCCHHHHHHHH
Q 043969 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPS----VLHFTTLMDGLSRAGNLDACKYFF 173 (300)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 173 (300)
+|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555432 23444555555555555555555555555554332111 112334444555555555555555
Q ss_pred HHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043969 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253 (300)
Q Consensus 174 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (300)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|.+.++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 5554432 11233444455555555555555555555554322212334455555555555555555555555543 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
+...+..++..+.+.|++++|..+++++.+.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4344455555555555555555555555544
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2e-21 Score=159.39 Aligned_cols=273 Identities=13% Similarity=0.061 Sum_probs=227.7
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcC---HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPF---KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTY 83 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (300)
|.+..++..+...+...|++++|...++.+...+..++ ...+..+...+...|+++.|..+|+++.+.. +++..++
T Consensus 66 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 144 (389)
T PRK11788 66 PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGAL 144 (389)
T ss_pred cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHH
Confidence 34566888899999999999999999999877532222 2467889999999999999999999998864 3467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 043969 84 NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD----FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (300)
..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...++++.+.. +.+...+..+...
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 223 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDL 223 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHH
Confidence 9999999999999999999999987652222 1235567778889999999999999998864 4456678888899
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 043969 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239 (300)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (300)
+.+.|++++|...++++.+.+......+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999987643323467889999999999999999999999886 46666778899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 043969 240 CTMMKEMESRGCNPNFLVYNTLVSNLRN---AGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~ 285 (300)
..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+++
T Consensus 302 ~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 302 QALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9999999875 6888899888887664 568999999999999877
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=8.2e-20 Score=165.19 Aligned_cols=268 Identities=13% Similarity=0.067 Sum_probs=138.0
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
+...|..+...+.+.|++++|.+.++++.... +.+...+..+...+...|++++|..+++++.+..+ .+..++..+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34444444444555555555555554444332 22233444444444455555555555554444321 13444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDA 168 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (300)
.+...|++++|.++++.+.... +.+...+..+...+...|++++|.+.++.+...+ |+..++..+..++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 5555555555555555544443 3344444555555555555555555555555432 223444445555555555555
Q ss_pred HHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 169 CKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
|...++.+.+.. +.+...+..+...+...|++++|...|+++.+.. +++...++.+...+...|+ .+|+..+++..+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 555555555432 2344455555555566666666666666665543 2345555555555555555 556666555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 249 RGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.. +-+...+..+..++...|++++|.++++++++.+
T Consensus 832 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 832 LA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred hC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 31 2233445556666677777777777777777654
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=1.9e-19 Score=162.84 Aligned_cols=273 Identities=12% Similarity=0.059 Sum_probs=174.3
Q ss_pred CCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043969 6 FPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNI 85 (300)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (300)
.|+++.++..+...+...|++++|.+.|.++...+ +.+...+..+...+...|++++|.+.++++.+..+. +..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 34566677777777777777777777777766543 233446666777777777777777777777765432 5666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (300)
+...+.+.|+.++|...++++...+ +.+...+..+...+...|++++|..+++.+.+. .+.+...|..+..++...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC
Confidence 7777777777777777777765553 345555666666677777777777777776654 24455666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
+++|...|+.+.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+..++..++..+...|++++|.++++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777666542 2244556666666666777777777776666542 22455666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 246 MESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+.+.+ +.+...+..+...+...|++++|.+.++++.+.+
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 65542 3344555555556666666666666666665543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=8.4e-17 Score=138.95 Aligned_cols=268 Identities=12% Similarity=0.017 Sum_probs=145.0
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCA 89 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (300)
...+..+...+.+.|++++|.+.+++..... +.+...+..+...+...|++++|...++.+....+. +...+..+ ..
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~ 186 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LS 186 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HH
Confidence 3444445555555555555555555554432 222334555555555555555555555555444322 22222222 22
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHH-
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDA- 168 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 168 (300)
+...|++++|...++.+.+..-.++...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhh
Confidence 44555666666555555443211223333334455556666666666666665542 3344555556666666666664
Q ss_pred ---HHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 169 ---CKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 169 ---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
|...|+...+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...+++
T Consensus 266 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666665542 223445666666666677777777777766665322 345555666666677777777777766
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 246 MESRGCNPNFL-VYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 246 ~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+... .|+.. .+..+..++...|+.++|...|+++.+..
T Consensus 344 al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 344 LARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6654 23332 23333455666777777777777766553
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=7.8e-17 Score=139.18 Aligned_cols=271 Identities=11% Similarity=0.022 Sum_probs=215.9
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
-+...+..++......|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+..+ .+...+..+.
T Consensus 74 ~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la 151 (656)
T PRK15174 74 NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHL 151 (656)
T ss_pred CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 345556666777778999999999999988764 34455788888999999999999999999988642 3677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (300)
..+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++......+...+...|+++
T Consensus 152 ~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 152 RTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence 99999999999999999886654 2333444333 347788999999999999877643344445556677888999999
Q ss_pred HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 043969 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK----AQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMM 243 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (300)
+|...++...... +.+...+..+...+...|++++ |...|++..+... .+...+..+...+...|++++|...+
T Consensus 230 eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 230 EAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998764 3356677888899999999986 8999999988643 36788999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 244 KEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
++..+.. +.+...+..+..++.+.|++++|.+.++++.+.+
T Consensus 308 ~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 308 QQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999863 3345667778889999999999999999999765
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=7.9e-16 Score=133.07 Aligned_cols=257 Identities=12% Similarity=-0.009 Sum_probs=207.9
Q ss_pred ccHHHHHHHHHHhhhcC-CCc-CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043969 24 GLARKVVERFIKSKLFN-FRP-FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHR 101 (300)
Q Consensus 24 ~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (300)
+++++|.+.|++....+ ..| ....|+.+...+...|++++|+..+++.++..+. ....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 57889999999887654 234 3447888888999999999999999999887432 46688888899999999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043969 102 LLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181 (300)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (300)
.+++..+.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|+...+..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 999998764 4567889999999999999999999999999874 4456778888899999999999999999988752
Q ss_pred CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043969 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV------FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF 255 (300)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (300)
+.+...++.+...+...|++++|+..|++..+.....+. ..++.....+...|++++|.+++++..+.. +.+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 335678899999999999999999999998875322111 112223333445799999999999988763 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 256 LVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 256 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
..+..+...+.+.|++++|.+.|++..+..
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 578889999999999999999999987654
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=3e-15 Score=129.51 Aligned_cols=188 Identities=16% Similarity=0.098 Sum_probs=144.6
Q ss_pred CCHHHHHHHHHHHHhCC-C-CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHH
Q 043969 94 GKLDQFHRLLDEMGRSG-F-SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKY 171 (300)
Q Consensus 94 ~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (300)
+++++|.+.|+.....+ . +.....+..+...+...|++++|+..+++..+.. +.....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 35666666666666543 1 2234456677777788889999999998888753 3345677788888888999999999
Q ss_pred HHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043969 172 FFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC 251 (300)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (300)
.|+...+.. +.+...|..+...+...|++++|...|++..+... .+...+..+..++.+.|++++|+..+++..+. .
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~ 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-F 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C
Confidence 998887763 33567788888888999999999999999887643 35677888888899999999999999988875 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 252 NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 252 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+.+...+..+..++...|++++|.+.|++.++..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3356788888888999999999999999988753
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.5e-18 Score=135.51 Aligned_cols=267 Identities=13% Similarity=0.120 Sum_probs=113.2
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcC-CCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFN-FRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
+...+ .+...+.+.|++++|++++.+..... .+.+...|..+...+...++++.|...++++.+.+.. ++..+..++
T Consensus 8 ~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~ 85 (280)
T PF13429_consen 8 SEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 33344 45778889999999999996644332 2334446666777777889999999999999987644 666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcHhhHHHHHHHHHhCCCH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVG-FDPSVLHFTTLMDGLSRAGNL 166 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 166 (300)
.. ...+++++|.+++....+. .+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 77 7899999999999877655 3567778888899999999999999999987542 345777888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043969 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246 (300)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (300)
++|.+.++...+.. +.|......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|...+++.
T Consensus 163 ~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999998873 2257778889999999999999999998887763 345667889999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 247 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
.+.. +.|......+..++...|+.++|.++.+++.+
T Consensus 241 ~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccc-cccccccccccccccccccccccccccccccc
Confidence 8852 44788888999999999999999999887754
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.9e-15 Score=115.46 Aligned_cols=276 Identities=16% Similarity=0.299 Sum_probs=199.9
Q ss_pred CCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043969 6 FPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNI 85 (300)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (300)
.|-+..++..+|.+.++....+.|.+++.+......+.+..+||.+|.+-.-. ...++..+|......||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 45678899999999999999999999999988888899999999999876443 33788999999999999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHH-HHHHHHHHHHc----CCC----CcHhh
Q 043969 86 VMCAKYRLGKLDQ----FHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLA-ALNLLNHMKEV----GFD----PSVLH 152 (300)
Q Consensus 86 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~~~~ 152 (300)
++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.+++.+ +..++.++... .+. -+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998764 57788999999999999999999999999888755 45555555432 222 24455
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCc---cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANK----GCMPD---VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNS 225 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (300)
|...+..|.+..+.+.|..+..-+... .+.|+ ..-|..+....|+....+.-...|..|+-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 677788888888888888776655432 11222 12344555566666666666666666665545556666666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCC-------------------CCC---------------------------------
Q 043969 226 MIRGFCMAGKFDEACTMMKEMESRG-------------------CNP--------------------------------- 253 (300)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~--------------------------------- 253 (300)
++++..-.+.++-.-++|.+++..| ..|
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 6666655565555555555444333 111
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 254 --NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 254 --~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+....+.+.-.+.+.|..++|.+++..+.+++
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 22234445555678899999999999887666
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=3.7e-16 Score=126.29 Aligned_cols=264 Identities=14% Similarity=0.148 Sum_probs=220.0
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcC-HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043969 11 RTFNILICTCGEVGLARKVVERFIKSKLFNFRPF-KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCA 89 (300)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (300)
..|+.|...+-..|+...|+..|++..+. .|+ ...|..|...|...+.++.|...|.+.....+. ....+..+...
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~i 295 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACI 295 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEE
Confidence 45677777778889999999999998776 444 348889999999999999999999988876432 56778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHH
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPD-FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDA 168 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (300)
|...|.++.|+..+++..+. .|+ +..|+.|..++-..|+..+|.+.|.+..... +......+.|...|...|.++.
T Consensus 296 YyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchH
Confidence 99999999999999998876 344 6789999999999999999999999988863 4455778889999999999999
Q ss_pred HHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 169 CKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN-VFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
|.++|....+.. +--....+.|...|-+.|++++|+..|++... +.|+ ...|+.+...|-..|+...|.+.+.+.+
T Consensus 373 A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 373 ATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 999999887752 22345788899999999999999999999887 4555 5688999999999999999999999888
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 248 SRGCNPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 248 ~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.. .|. ...++.|...|...|++.+|.+-++..++-.
T Consensus 450 ~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 450 QI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 74 555 4678889999999999999999999988765
No 18
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=3.9e-14 Score=115.76 Aligned_cols=254 Identities=10% Similarity=0.082 Sum_probs=172.2
Q ss_pred HhhccccHHHHHHHHHHhhhcCCCcCHHHHH--HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043969 19 TCGEVGLARKVVERFIKSKLFNFRPFKNSYN--AILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKL 96 (300)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (300)
...+.|+++.+.+.+.++.+. .|+..... .....+...|+++.|...++++.+..+. ++.....+...|.+.|++
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhH
Confidence 335667777777777776553 34432222 2345666677777777777777666533 566666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCCH-------hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHH
Q 043969 97 DQFHRLLDEMGRSGFSPDF-------HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDAC 169 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (300)
++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence 7777777777666533221 12222233333334445555555555433 244666677788888899999999
Q ss_pred HHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 170 KYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
..+++...+. .|+... .++.+....++.+++.+..+...+... -|......+...|.+.+++++|.+.|+...+.
T Consensus 283 ~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 283 QQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999888774 344421 223333456889999999988887643 36677888899999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 250 GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
.|+...+..+...+.+.|+.++|.+++++...
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 68888888899999999999999999887653
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=4e-14 Score=130.36 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCM 232 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (300)
+..+...+.+.|++++|...|+...+.. +.+...+..++..+...|++++|++.++.+.+... .+..++..+..++..
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHh
Confidence 3344444555555555555555554432 22344455555555555555555555555443311 133344444555555
Q ss_pred cCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 233 AGKFDEACTMMKEMESRGC--NP---NFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
.|++++|.++++++....- +| +...+..+...+...|++++|++.|++..
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555554311 11 11233334444555555555555555554
No 20
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=7.8e-14 Score=114.59 Aligned_cols=260 Identities=12% Similarity=0.056 Sum_probs=176.7
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCcCH--HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRPFK--NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
.....+.|+.+.+.+.+.+..+.. |+. ..-......+...|+++.|...++.+.+..+. +......+...+...|
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Confidence 455667788888888888765542 333 23333466777788888888888888877543 6667777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHH-HHHHHH---hcCCChHHHHHHHHHHHHcC---CCCcHhhHHHHHHHHHhCCCHH
Q 043969 95 KLDQFHRLLDEMGRSGFSPDFHTYN-ILLHVL---GKGDKPLAALNLLNHMKEVG---FDPSVLHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 167 (300)
++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+.+.. .+.+...+..+...+...|+.+
T Consensus 202 d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 888888888888877643 333231 111111 22222222333444444331 1236677788888899999999
Q ss_pred HHHHHHHHHHhCCCCCccccH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHH
Q 043969 168 ACKYFFDEMANKGCMPDVVCY---TVMITSYIAAGELEKAQDLFDGMITKGQLPNV--FTYNSMIRGFCMAGKFDEACTM 242 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 242 (300)
+|..++++..+. .|+.... ..........++.+.+.+.++...+... -|. .....+...+.+.|++++|.+.
T Consensus 281 ~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 281 SAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred HHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 999999998876 3444321 1122222345778888888888776522 234 5667888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 243 MKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 358 le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 358 FKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99644444578888888999999999999999999987643
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=9.6e-14 Score=127.88 Aligned_cols=262 Identities=11% Similarity=0.035 Sum_probs=185.4
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH----------
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIV---------- 86 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------- 86 (300)
...+.+.|++++|.+.|++..... +.+...+..+...+...|++++|++.|+++.+.... +...+..+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHH
Confidence 345667889999999999887764 344557777888889999999999999988876422 23333222
Q ss_pred --------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHH
Q 043969 87 --------------------------------MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAA 134 (300)
Q Consensus 87 --------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (300)
...+...|++++|++.+++..+.. +-+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 233445788888888888887764 34566777888888999999999
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-----------------------------------
Q 043969 135 LNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK----------------------------------- 179 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------- 179 (300)
...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999887653 223333333333334444444444443322110
Q ss_pred ----CCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043969 180 ----GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF 255 (300)
Q Consensus 180 ----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (300)
..+.+...+..+...+.+.|++++|+..|++..+... .+...+..++..+...|++++|.+.++...+.. +.+.
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~ 671 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSL 671 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCCh
Confidence 1233455667788888899999999999999988743 367888899999999999999999999877642 2244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 256 LVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 256 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
..+..+..++...|++++|.++++++++.
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 56667778888999999999999998875
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=1.2e-13 Score=122.97 Aligned_cols=263 Identities=11% Similarity=0.027 Sum_probs=147.3
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
+...|..+...+.. ++..+|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44555555555554 5666666655555443 344333333344445666677776666665443 233334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDA 168 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (300)
++.+.|+.++|...++...+.. +.+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 6666667666666666666543 222223333333344456677777666666654 3445566666666666777777
Q ss_pred HHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 169 CKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
|...++...... +.+...++.+..++...|++++|+..+++..+... -+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777666666552 22344555566666666677777776666666532 2455666666666666777777766666665
Q ss_pred CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 249 RGCNPNF-LVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 249 ~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
. .|+. .+.........+..+++.|.+-+++...
T Consensus 706 l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 706 D--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred c--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4 2332 3333444444555555555555555443
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.71 E-value=7.9e-15 Score=118.80 Aligned_cols=266 Identities=15% Similarity=0.148 Sum_probs=184.3
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhH-----
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTY----- 83 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----- 83 (300)
-..+|..+...+...|++++|+.+++.+.+.. +-.+..|..+..++...|+.+.|.+.|.+.++. .|+....
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 45788889999999999999999999988763 334558999999999999999999999888876 3433322
Q ss_pred ------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHhcCCChH
Q 043969 84 ------------------------------NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD-FHTYNILLHVLGKGDKPL 132 (300)
Q Consensus 84 ------------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 132 (300)
+.|...+...|+...|++.|++..+. .|+ ...|-.|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 22222222334445555555554443 222 345555555666666666
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc-cccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 133 AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD-VVCYTVMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (300)
.|+..|.+..... +.....+..+...|..+|+++.|++.|++..+. .|+ ...|+.|..++-..|++.+|.+.|.+.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 6666655555431 223345555556666777777888877777765 343 457888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 212 ITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 212 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
..... ....+.+.|...|...|.+++|..+|....+- .|. ...++.|...|.+.|++++|..-+++.+.-.
T Consensus 347 L~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 347 LRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 77532 24567778888888888888888888877763 444 3567778888888888888888888887755
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.2e-13 Score=107.36 Aligned_cols=238 Identities=18% Similarity=0.246 Sum_probs=190.5
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
+..+|.++|.++++--..+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4458999999999999999999999999888778899999999976443322 678889999999999999999999
Q ss_pred HHhcCCChHH----HHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHH-HHHHHHHHHhC----CCCC----ccccHHH
Q 043969 124 VLGKGDKPLA----ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDA-CKYFFDEMANK----GCMP----DVVCYTV 190 (300)
Q Consensus 124 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~ 190 (300)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .++| +...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998765 56788899999999999999999999988888754 44444444332 2233 3345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 191 MITSYIAAGELEKAQDLFDGMITK----GQLPN---VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~----~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (300)
.+..|.+..+.+-|.++-.-+... -+.|+ ..-|..+....++....+.....++.|.-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 777788888888888876654432 12232 23467778888888899999999999998777889999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 043969 264 NLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+..-.|.++-..+++.+++..|
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhh
Confidence 9999999999999999999998
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=3.6e-13 Score=119.85 Aligned_cols=232 Identities=10% Similarity=0.042 Sum_probs=188.8
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 55678888887776 88889999888887763 55444444455557899999999999998665 456666777778
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHH
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK 203 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 203 (300)
.+.+.|++++|...+++..+.. +.....+..+.......|++++|...++...+. .|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 8899999999999999998864 333333444444555679999999999999876 4678889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
|...+++..+... .+...++.+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|+..+++.++
T Consensus 628 A~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999998743 367788889999999999999999999999862 33567888999999999999999999999987
Q ss_pred cC
Q 043969 284 KG 285 (300)
Q Consensus 284 ~~ 285 (300)
..
T Consensus 706 l~ 707 (987)
T PRK09782 706 DI 707 (987)
T ss_pred cC
Confidence 65
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.69 E-value=1.3e-12 Score=115.52 Aligned_cols=273 Identities=11% Similarity=0.094 Sum_probs=159.0
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
.+...+..+...+.+.|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+..+ .+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHH
Confidence 344457777777888888888888888876653 33445666777777888888888888888877632 2455 77777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHH----------------------------
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLN---------------------------- 139 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------- 139 (300)
.++...|+.++|+..++++.+.. +.+...+..+..++...+..++|+..++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 77778888888888888877663 3344444555555555555444443333
Q ss_pred ------------------HHHHc-CCCCcHh-hHH----HHHHHHHhCCCHHHHHHHHHHHHhCCCC-CccccHHHHHHH
Q 043969 140 ------------------HMKEV-GFDPSVL-HFT----TLMDGLSRAGNLDACKYFFDEMANKGCM-PDVVCYTVMITS 194 (300)
Q Consensus 140 ------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 194 (300)
.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. .-..+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 22221 0111110 110 0122344556777777777777665321 211 11224556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-----------CCCCH---HH
Q 043969 195 YIAAGELEKAQDLFDGMITKGQLP---NVFTYNSMIRGFCMAGKFDEACTMMKEMESRG-----------CNPNF---LV 257 (300)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~---~~ 257 (300)
+...|++++|+..|+++.+..... .......+..++...|++++|.++++.+.... -.|+. ..
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 677777777777777765542111 12344555556667777777777777666531 01221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 258 YNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 258 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+..+...+...|+.++|+++++++.+..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3445556666677777777777766543
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=2.1e-15 Score=117.86 Aligned_cols=233 Identities=14% Similarity=0.128 Sum_probs=115.2
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
++..|..+...+...++++.|.+.++++...+. -+...+..++.. ...+++++|.++++...+.. ++...+..++.
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~ 118 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQ 118 (280)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccccc-cccccccccccccccccccc--cccchhhHHHH
Confidence 444455556666778999999999999887652 245577778777 78999999999998876653 56677888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSG-FSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (300)
.+.+.++++++..+++.+.... .+.+...|..+...+.+.|++++|++.+++..+.. |.+....+.++..+...|+.+
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChH
Confidence 9999999999999999986543 34577788899999999999999999999999873 446778889999999999999
Q ss_pred HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
++..++....+.. +.+...+..+..++...|+.++|...|++..+.. +.|......+..++...|+.++|.++.++..
T Consensus 198 ~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 198 EAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 9999998887763 5577788999999999999999999999998863 3388888999999999999999999988765
Q ss_pred H
Q 043969 248 S 248 (300)
Q Consensus 248 ~ 248 (300)
.
T Consensus 276 ~ 276 (280)
T PF13429_consen 276 R 276 (280)
T ss_dssp -
T ss_pred c
Confidence 4
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.67 E-value=1.3e-12 Score=115.51 Aligned_cols=274 Identities=12% Similarity=-0.024 Sum_probs=174.2
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIV 86 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (300)
|.+...+..+...+...|+.++|+..+++..... +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~l 156 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEY 156 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3456667777788888889999999888877653 34455 777888888889999999998888887543 45555555
Q ss_pred HHHHHhcCCHHHHHHHH----------------------------------------------HHHHhC-CCCCCHh-HH
Q 043969 87 MCAKYRLGKLDQFHRLL----------------------------------------------DEMGRS-GFSPDFH-TY 118 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~----------------------------------------------~~~~~~-~~~~~~~-~~ 118 (300)
..++...+..+.|++.+ +.+.+. ...|+.. .+
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 55555555544444333 333321 1112111 11
Q ss_pred H----HHHHHHhcCCChHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC---ccccHHH
Q 043969 119 N----ILLHVLGKGDKPLAALNLLNHMKEVGFD-PSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP---DVVCYTV 190 (300)
Q Consensus 119 ~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 190 (300)
. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+.+....... .......
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 1 1122345567888888888888776422 222 22224667888888888888888876542111 1233455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 043969 191 MITSYIAAGELEKAQDLFDGMITKGQ-----------LPN---VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL 256 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (300)
+..++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++... .+.+..
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~ 394 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQG 394 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH
Confidence 66677788888888888887776421 123 234456666777778888888888877765 234456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 257 VYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 257 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+..+...+...|++++|++.+++.++..
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 66777777777788888888877777654
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.3e-12 Score=106.82 Aligned_cols=253 Identities=11% Similarity=0.053 Sum_probs=191.4
Q ss_pred cccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH--HHHHHHHhcCCHHHHH
Q 043969 23 VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN--IVMCAKYRLGKLDQFH 100 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 100 (300)
.|++++|.+.+.......-.|. ..|.....+..+.|+++.|...+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPV-VNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 5899999988887655421222 23444455558999999999999999876 44443332 3357888999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH-------hhHHHHHHHHHhCCCHHHHHHHH
Q 043969 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV-------LHFTTLMDGLSRAGNLDACKYFF 173 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 173 (300)
..++.+.+.. |-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998876 557788899999999999999999999999987654322 12333444444555667777777
Q ss_pred HHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043969 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253 (300)
Q Consensus 174 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (300)
+.+.+. .+.+......+...+...|+.++|.+++.+..+. .|+.... ++.+....++.+++.+..+...+. .+-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-CCC
Confidence 776544 2447778889999999999999999999999874 4455332 334445669999999999999976 233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|...+..+...+.+.|++++|.+.|+++.+..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55678888999999999999999999999886
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.2e-13 Score=112.63 Aligned_cols=254 Identities=11% Similarity=0.034 Sum_probs=178.4
Q ss_pred cHHHHHHHHHHhhhcCCCcCH-HHHHHHHHHHHccCcHHHHHHHHHHhhhCCC---------------------------
Q 043969 25 LARKVVERFIKSKLFNFRPFK-NSYNAILHALLGIRQYKLIEWVYQQMSDEGY--------------------------- 76 (300)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------- 76 (300)
+.++|+..|.+.... .+++ .....+.++|...+++++|+.+|+.+.+..+
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 567788888774443 3333 4666778888888888888888887765421
Q ss_pred ------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH
Q 043969 77 ------APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV 150 (300)
Q Consensus 77 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (300)
+-.+.+|.++.++|.-.++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+...... +-+-
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhY 489 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHY 489 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhh
Confidence 2245667777777777778888888888777663 2256777777777777778888888887776531 1122
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGF 230 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (300)
..|-.+.-.|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.|+|++++++....... |+..--..+..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il 567 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASIL 567 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHH
Confidence 344456667888888888888888887764 225556666777778888888888888888776544 444444456666
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 231 CMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|.-+.+.+
T Consensus 568 ~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7778888888888888875 33345667777788888888888888777776654
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=1.6e-12 Score=110.81 Aligned_cols=266 Identities=10% Similarity=-0.003 Sum_probs=177.6
Q ss_pred chHHHHHHHHHhh-----ccccHHHHHHHHHHhhhcCCCcC-HHHHHHHHHHHH---------ccCcHHHHHHHHHHhhh
Q 043969 9 TARTFNILICTCG-----EVGLARKVVERFIKSKLFNFRPF-KNSYNAILHALL---------GIRQYKLIEWVYQQMSD 73 (300)
Q Consensus 9 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 73 (300)
+...|...+.+.. ..++.++|.+.|++.... .|+ ...|..+..++. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 3444555554421 134577888889888766 344 335555554433 23457889999998888
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhH
Q 043969 74 EGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHF 153 (300)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (300)
..+. +...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7544 67778888888888899999999999988775 445677888888888999999999999998886422 22233
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (300)
..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.++.... ..+....+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence 34444566688899999998887765322234456677778888999999999988876542 12344455555666776
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 234 GKFDEACTMMKEMESR-GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 234 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
| ++|...++.+.+. .-.+....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6 4777777776653 122222222 33345666777776665 8888776
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=9.1e-13 Score=98.85 Aligned_cols=257 Identities=10% Similarity=0.083 Sum_probs=141.8
Q ss_pred ccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC---CHhhHHHHHHHHHhcCCHHHHH
Q 043969 24 GLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAP---DILTYNIVMCAKYRLGKLDQFH 100 (300)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 100 (300)
++.++|.++|.++.+.+ +-+..+.-+|.+.+.+.|..+.|+.+.+.+.++.--+ .......+..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45666677776666532 2223355566666666777777777766666541110 0122334445566666677777
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH----hhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043969 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV----LHFTTLMDGLSRAGNLDACKYFFDEM 176 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (300)
.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|...+...
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7776666544 334555666666777777777777766666665433221 23444444555556666666666666
Q ss_pred HhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 043969 177 ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL 256 (300)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (300)
.+.+ +..+..-..+.+.....|+++.|.+.++...+.+...-..+...|..+|.+.|+.++....+.++.+... ...
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Ccc
Confidence 5542 1123333344455666677777777777666664444445566666677777777777766666665422 222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 257 VYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 257 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.-..+-+.-....-.+.|..++.+-+.+.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~ 312 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRK 312 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhC
Confidence 22233332233333445555554444443
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=4.7e-12 Score=95.08 Aligned_cols=232 Identities=15% Similarity=0.110 Sum_probs=170.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------hHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF------HTYNI 120 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 120 (300)
.|-.-++.+ -+++.++|.++|-+|.+... .+..+.-++.+.|.+.|..|.|+++.+.+.++ ||. .....
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 344444433 34677888888888887532 25556667778888888888888888888765 442 23445
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc----cccHHHHHHHHH
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD----VVCYTVMITSYI 196 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 196 (300)
|..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|.++-+++.+.+..+. ...|..+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 5666888888888888888888754 33455677888888888888888888888877654443 245777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043969 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHE 276 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 276 (300)
...+.+.|..++.+..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+...-..+...|..+|...|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 888888888888888776432 3444445667788888888888888888887555556677888888888888888888
Q ss_pred HHHHHHHcC
Q 043969 277 VIRHMVEKG 285 (300)
Q Consensus 277 ~~~~~~~~~ 285 (300)
.+.++.+..
T Consensus 271 fL~~~~~~~ 279 (389)
T COG2956 271 FLRRAMETN 279 (389)
T ss_pred HHHHHHHcc
Confidence 888888765
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=2.6e-12 Score=97.74 Aligned_cols=199 Identities=12% Similarity=0.094 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 043969 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGL 160 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (300)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555554432 2234444555555555555555555555555442 22334445555555
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 043969 161 SRAGNLDACKYFFDEMANKGCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239 (300)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (300)
...|++++|...++........+ ....+..+...+...|++++|...+.+..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 56666666666666555431111 223445555666666777777777766665422 2345566666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 240 CTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777766654 233445555566666667777777776666543
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.61 E-value=2.9e-12 Score=97.45 Aligned_cols=203 Identities=11% Similarity=0.029 Sum_probs=167.5
Q ss_pred cCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 043969 43 PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL 122 (300)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (300)
.....+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 3345788889999999999999999999987643 357788888899999999999999999988765 45667788888
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCC-CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCH
Q 043969 123 HVLGKGDKPLAALNLLNHMKEVGF-DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGEL 201 (300)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 201 (300)
..+...|++++|.+.+++...... +.....+..+...+...|++++|...+....... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 899999999999999999987532 2234567778888999999999999999988763 23456788888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998876 3446677778888889999999999998877653
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=3e-11 Score=93.32 Aligned_cols=255 Identities=11% Similarity=0.078 Sum_probs=155.1
Q ss_pred cccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043969 23 VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (300)
.|+|.+|...+.+..+.+..|- ..|....++.-+.|+.+.+-.++.+.-+....++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4677777777776665553332 255556666666677777777776666553344555555555666666777777666
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH-------hhHHHHHHHHHhCCCHHHHHHHHHH
Q 043969 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV-------LHFTTLMDGLSRAGNLDACKYFFDE 175 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (300)
++++.+.+ +.++........+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666654 445566666666777777777777766666665543222 2333444333333333333333333
Q ss_pred HHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------------------------CCHHHHHH
Q 043969 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL------------------------------PNVFTYNS 225 (300)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------p~~~~~~~ 225 (300)
.... .+.++..-..++.-+.++|+.++|.++..+..+.+.. -++..+..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 3222 1223333334444444444444444444433332221 24467788
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 226 MIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
|...|.+.+.|.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.+..++..
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 889999999999999999977764 7889999999999999999999999888765
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.61 E-value=1.6e-11 Score=107.44 Aligned_cols=265 Identities=11% Similarity=0.111 Sum_probs=159.0
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 15 ILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
.++..+...|+.++|+..+++.... .+........+...+...|++++|+++|+++.+..+. ++..+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC
Confidence 5555555566666666666665511 0111122223344566667777777777777666433 4555555566666667
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHH
Q 043969 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFD 174 (300)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (300)
+.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. |.+...+..+..+..+.|-...|.++..
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 777777777666555 3454444444444444455555777777776653 3344455555555555443333322222
Q ss_pred ------------------------------------------------HHHhC-CCCCcc-ccH----HHHHHHHHhcCC
Q 043969 175 ------------------------------------------------EMANK-GCMPDV-VCY----TVMITSYIAAGE 200 (300)
Q Consensus 175 ------------------------------------------------~~~~~-~~~~~~-~~~----~~li~~~~~~~~ 200 (300)
.+... +..|.. ..| .-.+-++...|+
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 22110 111211 111 123456677888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043969 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRG-----CNPNFLVYNTLVSNLRNAGKLAEAH 275 (300)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~ 275 (300)
+.++++.|+.+...+.+....+-..+..+|...+++++|..+++.+.... ..++......|.-++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 88899999988887765455677888999999999999999999887642 1223344577888899999999999
Q ss_pred HHHHHHHHc
Q 043969 276 EVIRHMVEK 284 (300)
Q Consensus 276 ~~~~~~~~~ 284 (300)
.+++++.+.
T Consensus 388 ~~l~~~~~~ 396 (822)
T PRK14574 388 QFAVNYSEQ 396 (822)
T ss_pred HHHHHHHhc
Confidence 999999874
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=1.6e-11 Score=101.04 Aligned_cols=259 Identities=8% Similarity=-0.050 Sum_probs=182.7
Q ss_pred hccccHHHHHHHHHHhhhcCCCcCHH-HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 043969 21 GEVGLARKVVERFIKSKLFNFRPFKN-SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (300)
...|+++.|.+.+.+.... .|+.. .+-....+....|+.+.|.+.+.+..+....++....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3468999999999887665 34433 44555677888899999999999988764333333444457888899999999
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHH---HhCCCHHHHHHHHHHH
Q 043969 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGL---SRAGNLDACKYFFDEM 176 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~ 176 (300)
...++.+.+.. |-++.+...+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..+.+...+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998885 5577788999999999999999999999999986543332211111221 2222333333344444
Q ss_pred HhCC---CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043969 177 ANKG---CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT-YNSMIRGFCMAGKFDEACTMMKEMESRGCN 252 (300)
Q Consensus 177 ~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (300)
.+.. .+.+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++...+. .
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 4431 123778888999999999999999999999998633221111 122222234457888999999888875 3
Q ss_pred CC-H--HHHHHHHHHHHhcCCHHHHHHHHHH--HHHc
Q 043969 253 PN-F--LVYNTLVSNLRNAGKLAEAHEVIRH--MVEK 284 (300)
Q Consensus 253 ~~-~--~~~~~li~~~~~~g~~~~a~~~~~~--~~~~ 284 (300)
|+ . ....++...+.+.|++++|.+.|++ ..+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 43 3 5566888999999999999999994 5443
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.60 E-value=3.8e-11 Score=105.19 Aligned_cols=265 Identities=11% Similarity=0.074 Sum_probs=189.9
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKL 96 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (300)
...+...|++++|+++++++.... +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 457788899999999999998875 334557778888999999999999999999877 45555554444444446666
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHH-----------------------------------
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHM----------------------------------- 141 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------------------------------- 141 (300)
.+|++.++++.+.. |.+...+..+..+..+.|-...|.++..+-
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 66999999999885 456777888888888888766665554321
Q ss_pred -------------HHc-C-CCCcHhhH----HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHH
Q 043969 142 -------------KEV-G-FDPSVLHF----TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202 (300)
Q Consensus 142 -------------~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (300)
... + .++....| .--+-++...++..++++.|+.+...+.+....+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 110 0 11111111 1224466778888899999999887775545557778888899999999
Q ss_pred HHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHH
Q 043969 203 KAQDLFDGMITKG-----QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC-----------NPN--F-LVYNTLVS 263 (300)
Q Consensus 203 ~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~-~~~~~li~ 263 (300)
+|..+|+.+.... ..++......|.-++...+++++|..+++++.+... .|| - ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999886642 123444457788888889999999999988887311 122 2 23445566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 043969 264 NLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+...|+..+|++.++++....
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA 446 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7788899999999999888765
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.2e-11 Score=97.17 Aligned_cols=264 Identities=11% Similarity=0.074 Sum_probs=192.9
Q ss_pred HHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCC--CCHhhHHHHH--------
Q 043969 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA--PDILTYNIVM-------- 87 (300)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~-------- 87 (300)
.++....+.++++.-.......|.+-+...-+....+.-...+++.|+.+|+++.+..+- -|..+|..++
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444566666666666666665444444444444555667788888888887776321 1455554443
Q ss_pred -----------------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 043969 88 -----------------------CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 88 -----------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|+.-++...+.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 23344467889999999988876 445677888888899999999999999999887
Q ss_pred CCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043969 145 GFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYN 224 (300)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (300)
. |.|-..|-.|.++|.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|......|-. +...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHH
Confidence 4 5688889999999999999999999999888763 447889999999999999999999999998887543 667888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 225 SMIRGFCMAGKFDEACTMMKEMESR----GC-NP-NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+...|-+.++.++|...+.+.++. |. .| ......-|..-+.+.+++++|..+.......+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 9999999999999999988877752 22 22 22233335556788889988888777666554
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=1.1e-10 Score=90.24 Aligned_cols=236 Identities=15% Similarity=0.142 Sum_probs=189.6
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHH
Q 043969 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALN 136 (300)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (300)
..|+|..|++...+..+.+..| ...|..-..+.-+.|+.+.+-+++.+..+..-.++....-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4699999999999988887553 556666778888999999999999999876335666777778888999999999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc-------cccHHHHHHHHHhcCCHHHHHHHHH
Q 043969 137 LLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD-------VVCYTVMITSYIAAGELEKAQDLFD 209 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~ 209 (300)
-+.++.+.+ +.++........+|.+.|++.....+...+.+.|.-.+ ..+|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999885 45667888999999999999999999999999887554 3468888888777777888778888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC------------------------------CHHHHH
Q 043969 210 GMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP------------------------------NFLVYN 259 (300)
Q Consensus 210 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~~ 259 (300)
..... .+-++..-..++.-+.+.|+.++|.++..+..+.+..| ++..+.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 87665 44466677788888899999999999888776654332 345578
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----hHHHHHHHhh
Q 043969 260 TLVSNLRNAGKLAEAHEVIRHMVEKG----KYIHLVSKFK 295 (300)
Q Consensus 260 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~l~~~~~ 295 (300)
+|...|.+.+.|.+|.+.|+..++.+ .|.-+...+.
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 88889999999999999999998877 4444444443
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=1.3e-11 Score=105.39 Aligned_cols=232 Identities=13% Similarity=0.019 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHHc-----cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH---------hcCCHHHHHHHHHHHHhC
Q 043969 44 FKNSYNAILHALLG-----IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKY---------RLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 44 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 109 (300)
+...|...+++... .+.+++|...|++..+..+. +...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34455555555322 23467999999999987433 4556666655443 224589999999999887
Q ss_pred CCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc-ccH
Q 043969 110 GFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV-VCY 188 (300)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 188 (300)
. +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...++...+.. |+. ..+
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 5 5567788888888999999999999999999874 4456778888899999999999999999998874 443 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 043969 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF-LVYNTLVSNLRN 267 (300)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~ 267 (300)
..+...+...|++++|...+++..+...+-+...+..+..++...|++++|...+.++... .|+. ...+.+...|..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 4445556778999999999999876532224556777888899999999999999987664 3443 344555556677
Q ss_pred cCCHHHHHHHHHHHHHc
Q 043969 268 AGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 268 ~g~~~~a~~~~~~~~~~ 284 (300)
.| +.|...++++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 488 NS--ERALPTIREFLES 502 (553)
T ss_pred cH--HHHHHHHHHHHHH
Confidence 77 4888888887764
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=3.9e-13 Score=112.98 Aligned_cols=250 Identities=14% Similarity=0.128 Sum_probs=150.7
Q ss_pred CccCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH
Q 043969 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI 80 (300)
Q Consensus 1 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (300)
|...|+.|+..||..+|..||..|+++.|- +|.-|...+.+.+...++.++.+....++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 356799999999999999999999999888 8888877777777778888888888888776665 5778
Q ss_pred hhHHHHHHHHHhcCCHHH---HHHHHHHH----HhCCCCCCHhHHHHH--------------HHHHhcCCChHHHHHHHH
Q 043969 81 LTYNIVMCAKYRLGKLDQ---FHRLLDEM----GRSGFSPDFHTYNIL--------------LHVLGKGDKPLAALNLLN 139 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~~~l--------------~~~~~~~~~~~~a~~~~~ 139 (300)
.+|..+..+|...||+.. +.+.+..+ ...|+......+-.. +....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999988654 22222222 222221111111111 111112233333333332
Q ss_pred HHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043969 140 HMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219 (300)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 219 (300)
.+....... .+..+++-+... +.-.+++........-.|++.+|..++..-..+|+.+.|..++.+|.+.|++.+
T Consensus 164 ~~Pvsa~~~---p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 164 KVPVSAWNA---PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hCCcccccc---hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 222110000 111112222221 122233333222221146777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043969 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK 270 (300)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 270 (300)
..-|..++-+ .++..-+..+++-|...|+.|+..|+.-.+-.+.+.|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7766666665 56666677777777777777777777666655555333
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7.3e-12 Score=102.48 Aligned_cols=239 Identities=9% Similarity=-0.019 Sum_probs=192.5
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCC---------------------------------CcCHHHHHHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNF---------------------------------RPFKNSYNAILHAL 55 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~ 55 (300)
+..+...+..+|...++++++..+|+..+.... +-...+|.++.+.|
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcf 431 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCF 431 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchh
Confidence 346677788899999999999999988654321 22344899999999
Q ss_pred HccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHH
Q 043969 56 LGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAAL 135 (300)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (300)
.-.++.+.|++.|++..+.... ...+|+.+..-+....++|.|...|+...... +.+-..|--+...|.+.++++.|+
T Consensus 432 SLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred hhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHH
Confidence 9999999999999999987432 67888888888999999999999999987543 223445566778899999999999
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043969 136 NLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKG 215 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 215 (300)
-.|++..+.+ |-+.+....+...+.+.|+.++|++++++...... .|+..--..+..+...+++++|+..++++.+.
T Consensus 510 ~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~- 586 (638)
T KOG1126|consen 510 FHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKEL- 586 (638)
T ss_pred HHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-
Confidence 9999999874 44666677788889999999999999999987642 35555556677778899999999999999986
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043969 216 QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCN 252 (300)
Q Consensus 216 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (300)
++-+...|..+...|.+.|+.+.|+.-|.-+.+..-+
T Consensus 587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 3335677888999999999999999988888876433
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=6.7e-12 Score=94.56 Aligned_cols=230 Identities=12% Similarity=0.067 Sum_probs=195.0
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH-HHHHHHHhc
Q 043969 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTY-NILLHVLGK 127 (300)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 127 (300)
+.+.++|.+.|-+.+|++.++..++. .|-+.||-.+-..|.+..+.+.|+.++.+-.+. .|-.+|| .-..+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 67899999999999999999998877 456778888999999999999999999988776 3544444 556778888
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHH
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDL 207 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 207 (300)
.++.++|.++|+...+.. +.++.....+...|.-.++++-|.+.|+.+...|+. +...|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998873 556677777788899999999999999999999875 788999999999999999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 208 FDGMITKGQLPN--VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 208 ~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|++....--.|+ ...|..+.......||+..|.+.|+-....+ .-....++.|.-.-.+.|++++|..+++...+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999887644444 4578888999999999999999999888763 2356788888877789999999999999888765
No 46
>PF13041 PPR_2: PPR repeat family
Probab=99.51 E-value=8.2e-14 Score=77.92 Aligned_cols=48 Identities=44% Similarity=0.836 Sum_probs=21.4
Q ss_pred CccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 183 PDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGF 230 (300)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (300)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=8e-10 Score=93.75 Aligned_cols=266 Identities=10% Similarity=0.043 Sum_probs=194.0
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKL 96 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (300)
.....-.|+.++|.+++.+....+ +.+...|.+|...|-..|+.+++...+-.+.-..++ |...|..+.....+.|++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccH
Confidence 333444599999999999988765 455568999999999999999998777655544433 778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhH----HHHHHHHHhCCCHHHHHHH
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHF----TTLMDGLSRAGNLDACKYF 172 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~ 172 (300)
++|.-+|.+..+.. +++...+-.-...|-+.|+...|...|.++.....+.+..-+ ...+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998875 556566666677888999999999999999887432232222 2334556667777888888
Q ss_pred HHHHHhC-CCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CC-------
Q 043969 173 FDEMANK-GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKG---------------------------QL------- 217 (300)
Q Consensus 173 ~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~------- 217 (300)
++..... +-..+...++.++..+.+...++.|......+.... ..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 8776652 223455667777777777777777777666655410 00
Q ss_pred -----------------------------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043969 218 -----------------------------PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNA 268 (300)
Q Consensus 218 -----------------------------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (300)
-+...|..+..+|...|++.+|+.++..+......-+...|..+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 122345667778888888888888888888764444566788888888888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 043969 269 GKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 269 g~~~~a~~~~~~~~~~~ 285 (300)
|..++|.+.+++.+...
T Consensus 463 ~e~e~A~e~y~kvl~~~ 479 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA 479 (895)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 88888888888887754
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.7e-11 Score=93.14 Aligned_cols=241 Identities=9% Similarity=0.042 Sum_probs=188.4
Q ss_pred cCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCC--cCHHHHHHH-----------------------------
Q 043969 3 ENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFR--PFKNSYNAI----------------------------- 51 (300)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l----------------------------- 51 (300)
+-|++-+...-+....+.-...|+++|...|++..+.+.- -|..+|+.+
T Consensus 255 ~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCC 334 (559)
T KOG1155|consen 255 SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCC 334 (559)
T ss_pred hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcccee
Confidence 3466666665555556666778999999999998776421 122244332
Q ss_pred --HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCC
Q 043969 52 --LHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129 (300)
Q Consensus 52 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (300)
.+-|.-.++.++|...|++.++.++. ....|+.+..-|....+...|.+.++...+.. |.|-..|-.|..+|.-.+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhc
Confidence 33334446789999999999998644 67789999999999999999999999999886 678889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 043969 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFD 209 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (300)
-+.=|+-.|++..+.. |.|...|.+|.++|.+.++.++|++.|......| ..+...+..|...|-+.++..+|...|.
T Consensus 413 Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 413 MHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred chHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999998873 6688999999999999999999999999998876 3366889999999999999999999998
Q ss_pred HHHHC----CCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 210 GMITK----GQL-P-NVFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 210 ~~~~~----~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
+.++. |.. | ......-|..-+.+.+++++|........
T Consensus 491 k~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 491 KYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 87653 332 2 22333345666777888888776554444
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.50 E-value=1.1e-13 Score=77.38 Aligned_cols=50 Identities=48% Similarity=0.937 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043969 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRN 267 (300)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (300)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.9e-11 Score=104.06 Aligned_cols=280 Identities=13% Similarity=0.087 Sum_probs=213.0
Q ss_pred ccCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhc---CCCcCH------HHHHHHHHHHHccCcHHHHHHHHHHhh
Q 043969 2 IENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLF---NFRPFK------NSYNAILHALLGIRQYKLIEWVYQQMS 72 (300)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (300)
..+|-++.+...|.+...+...|++.+|.+.|...+.. ...++. .+-..+.+.+-..++++.|.+.|....
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34566788899999999999999999999999887655 123333 123335666677789999999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcHh
Q 043969 73 DEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVG-FDPSVL 151 (300)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 151 (300)
+..+. =+..|--+.......+...+|...+....... ..++..++.+...+.+..++..|.+-|..+.+.- ..+|+.
T Consensus 524 kehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 524 KEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred HHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 87322 24445555544445678888998888887664 5677888888888888888888888777766542 224655
Q ss_pred hHHHHHHHHHh------------CCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043969 152 HFTTLMDGLSR------------AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219 (300)
Q Consensus 152 ~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 219 (300)
+.-+|.+.|.. .+..++|+++|....... +.|...-|-+...++..|++.+|..+|.+..+... -.
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~ 679 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DF 679 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hC
Confidence 55566665543 345788999999888764 34667777888888999999999999999998744 25
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESR-GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
..+|-.+.++|...|++..|+++|+...+. .-.-+..+...|.+++.+.|.+.+|.+.+.......
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 578889999999999999999999988764 344567888999999999999999999998887765
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2e-11 Score=92.08 Aligned_cols=231 Identities=12% Similarity=0.036 Sum_probs=193.1
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043969 13 FNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR 92 (300)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (300)
-+.+.+.|.+.|.+++|.+.+....+. .|-+.||-.|-++|.+.++...|+.++.+-++.- +-|+....-+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 356778899999999999999988776 4555689999999999999999999999888762 3244444556678888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHH
Q 043969 93 LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYF 172 (300)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (300)
.++.++|.++++...+.. +.+++....+...|.-.++++.|+..|+++.+.|+. +...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999998774 556777777888888999999999999999999865 778899998899999999999999
Q ss_pred HHHHHhCCCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 173 FDEMANKGCMPD--VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 173 ~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
|+.....--.|+ ...|-.+-......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 998876533343 356778888888899999999999988877544 6788999999999999999999999987764
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.1e-10 Score=89.88 Aligned_cols=275 Identities=11% Similarity=0.012 Sum_probs=214.6
Q ss_pred CCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH
Q 043969 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84 (300)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (300)
|+.-++.....-..-+-..+++++.+++++.....+ ++....+..-|..+...|+..+-..+=.++++.- +..+.+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 334455555556666777889999999999987765 5666677777888999999888888888888874 33788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC
Q 043969 85 IVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164 (300)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (300)
++..-|.-.|+.++|.+.|.+..... +.=...|-.....|.-.|..+.|+..+...-+. ++-....+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 99988888999999999999886653 222457888889999999999999998887664 2222222333444578889
Q ss_pred CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CC-CCHHHHHHHHHHHhccCCHHH
Q 043969 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK----G-QL-PNVFTYNSMIRGFCMAGKFDE 238 (300)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~-p~~~~~~~l~~~~~~~~~~~~ 238 (300)
+.+.|.++|.+.... .+-|+...+.+.-.....+.+.+|..+|+..... + -. --..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999988765 2446677777777777888999999999887632 1 11 134578899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 239 ACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|+..++..+.. .+-+..++.++.-.|...|+++.|...|.+.+-..
T Consensus 474 AI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 474 AIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999998876 35578899999999999999999999999988766
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=1.1e-10 Score=96.04 Aligned_cols=237 Identities=19% Similarity=0.217 Sum_probs=177.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhC-----C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CC
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDE-----G-YAPDIL-TYNIVMCAKYRLGKLDQFHRLLDEMGRS-----G--FS 112 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 112 (300)
+...+...|...|+++.|+.++++..+. | ..|... ..+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 6777999999999999999999988765 2 123333 3344667888999999999999888442 2 11
Q ss_pred CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc-----CC-CCcH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhC---CCC
Q 043969 113 PDFHTYNILLHVLGKGDKPLAALNLLNHMKEV-----GF-DPSV-LHFTTLMDGLSRAGNLDACKYFFDEMANK---GCM 182 (300)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 182 (300)
.-..+++.|..+|.+.|++++|...++...+. +. .|.+ ..++.+...+...+++++|..+++...+. -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 12345677777899999999998888776442 11 2222 34567777889999999999999876442 111
Q ss_pred Cc----cccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH---
Q 043969 183 PD----VVCYTVMITSYIAAGELEKAQDLFDGMITK-----G-QLP-NVFTYNSMIRGFCMAGKFDEACTMMKEMES--- 248 (300)
Q Consensus 183 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 248 (300)
++ ..+++.|...|...|++++|.+++++.... | ..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 357899999999999999999999998753 1 112 245678899999999999999999987654
Q ss_pred -CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 249 -RGC-NPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 249 -~~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
.|. .|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 233 46789999999999999999999998874
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.9e-10 Score=90.77 Aligned_cols=207 Identities=14% Similarity=0.147 Sum_probs=163.4
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHH
Q 043969 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALN 136 (300)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (300)
..|++++|.+.|++.+.....-....||+- -.+-..|++++|+..|-++... +..+..+.-.+.+.|....++..|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 347788888888888876433223333332 3456788999999998877543 23467777888888999999999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043969 137 LLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ 216 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 216 (300)
++.+.... ++.|+.....|...|-+.|+-.+|++.+-+--.. ++-+..+..+|...|....-+++++.+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 99887765 6778889999999999999999998887655433 456788899999999999999999999998754 6
Q ss_pred CCCHHHHHHHHHHH-hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043969 217 LPNVFTYNSMIRGF-CMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK 270 (300)
Q Consensus 217 ~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 270 (300)
+|+..-|..++..| .+.|++.+|..+++..... ++-|......|++.+...|.
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 89999999888665 4689999999999988765 77788899999998887775
No 55
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=3.4e-09 Score=88.27 Aligned_cols=260 Identities=15% Similarity=0.153 Sum_probs=177.5
Q ss_pred HHHHhhccccHHHHHHHHHHhhhcCCCcC-HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-
Q 043969 16 LICTCGEVGLARKVVERFIKSKLFNFRPF-KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRL- 93 (300)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 93 (300)
....+...|++++|++.+...... -+| ..........+.+.|+.++|..+|..++++++. |..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhc
Confidence 345667889999999999875443 344 446778888999999999999999999998633 444555555554222
Q ss_pred ----CCHHHHHHHHHHHHhC----------------------------------CCCCCHhHHHHHHHHHhcCCChHHHH
Q 043969 94 ----GKLDQFHRLLDEMGRS----------------------------------GFSPDFHTYNILLHVLGKGDKPLAAL 135 (300)
Q Consensus 94 ----~~~~~a~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (300)
.+.+...++++++... |+ +.+|..|-..|.......-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHH
Confidence 2455566666665332 21 133444444444333334444
Q ss_pred HHHHHHHHc----C----------CCCcH--hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc-cccHHHHHHHHHhc
Q 043969 136 NLLNHMKEV----G----------FDPSV--LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD-VVCYTVMITSYIAA 198 (300)
Q Consensus 136 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 198 (300)
+++...... + -+|+. .++..+...|...|++++|...++..++. .|+ +..|..-.+.+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 444444322 1 12333 24456677788899999999999988887 344 66788888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcCC
Q 043969 199 GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV------Y--NTLVSNLRNAGK 270 (300)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~g~ 270 (300)
|++++|.+.++..++.... |...-+..+..+.+.|+.++|.+++..+-..+..|.... | .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998887554 777778888888999999999999988877654333211 1 234567888899
Q ss_pred HHHHHHHHHHHHHc
Q 043969 271 LAEAHEVIRHMVEK 284 (300)
Q Consensus 271 ~~~a~~~~~~~~~~ 284 (300)
+..|++.|..+.+.
T Consensus 321 ~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 321 YGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776654
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=1.2e-09 Score=85.97 Aligned_cols=95 Identities=12% Similarity=-0.058 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (300)
|..+...+...|+.++|...|++..+.. +.+...|..+...+...|++++|...|+...+.. +-+..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444445555555555555555554443 2334455555555555555555555555555432 1223344444445555
Q ss_pred CCCHHHHHHHHHHHHhC
Q 043969 163 AGNLDACKYFFDEMANK 179 (300)
Q Consensus 163 ~~~~~~a~~~~~~~~~~ 179 (300)
.|++++|.+.|+...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.42 E-value=8.3e-10 Score=93.64 Aligned_cols=273 Identities=12% Similarity=0.118 Sum_probs=162.0
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
.....|.+|...|-+.|+.++++..+-..-..+ +.|...|..+.....+.|.++.|.-.|.+.++..+ ++....---+
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers 248 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-SNWELIYERS 248 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHH
Confidence 344556666666666666666665554433332 33334566666656666666666666666665532 2333333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH----HHHHHHhcCCChHHHHHHHHHHHHc-CCCCcHhhHHHHHHHHHh
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYN----ILLHVLGKGDKPLAALNLLNHMKEV-GFDPSVLHFTTLMDGLSR 162 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 162 (300)
..|-+.|+...|...|.++....-+.|..-+. ..+..+...++.+.|.+.++..... +-..+...++.++..+.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 45555566655555555555442111111111 1223333444444444444443331 111222233333333333
Q ss_pred CCC-------------------------------------------------------------HHHHHHHHHHHHhCCC
Q 043969 163 AGN-------------------------------------------------------------LDACKYFFDEMANKGC 181 (300)
Q Consensus 163 ~~~-------------------------------------------------------------~~~a~~~~~~~~~~~~ 181 (300)
... .+....+.....+...
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 333 3333344444443332
Q ss_pred --CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043969 182 --MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN 259 (300)
Q Consensus 182 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (300)
.-+...|.-+..++...|++.+|+.+|..+......-+...|-.+.++|...|.+++|.+.++..+... +.+...--
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri 487 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARI 487 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhh
Confidence 224566788899999999999999999999987555578899999999999999999999999999852 23445556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 260 TLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 260 ~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
.|-..+.+.|+.|+|.+.+..+..
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcccC
Confidence 677778999999999999998653
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=1.5e-09 Score=85.28 Aligned_cols=227 Identities=12% Similarity=-0.034 Sum_probs=159.8
Q ss_pred ccHHHHHHHHHHhhhcC-CCcC--HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043969 24 GLARKVVERFIKSKLFN-FRPF--KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100 (300)
Q Consensus 24 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (300)
+..+.++..+.++.... ..|+ ...|..+...+...|++++|...|++..+..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777766432 2232 236888888999999999999999999987644 7889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043969 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (300)
..|+...+.. +.+..++..+..++...|++++|.+.++...+.. |+..............++.++|...+.......
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999998764 3356778888888999999999999999998863 333222222333456788999999997755432
Q ss_pred CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043969 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK---GQ--L-PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN 254 (300)
Q Consensus 181 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (300)
.|+. |.. .......|+..++ +.+..+.+. .. . .....|..+...+.+.|++++|...|++..+.+. |+
T Consensus 196 -~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~ 269 (296)
T PRK11189 196 -DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN 269 (296)
T ss_pred -Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence 2332 222 2223345555444 344444422 11 1 1245788999999999999999999999998642 35
Q ss_pred HHHHHH
Q 043969 255 FLVYNT 260 (300)
Q Consensus 255 ~~~~~~ 260 (300)
..-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 444433
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=3.9e-10 Score=92.81 Aligned_cols=243 Identities=14% Similarity=0.132 Sum_probs=180.3
Q ss_pred CCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhc-----C-CCcCHH-HHHHHHHHHHccCcHHHHHHHHHHhhhC---
Q 043969 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLF-----N-FRPFKN-SYNAILHALLGIRQYKLIEWVYQQMSDE--- 74 (300)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 74 (300)
+.|.-..+...|...|...|+++.|..++...... | ..|... ..+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34444566777889999999999999999886554 1 134444 4455778899999999999999999763
Q ss_pred --CC-CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-hHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 043969 75 --GY-AP-DILTYNIVMCAKYRLGKLDQFHRLLDEMGRS-----GF-SPDF-HTYNILLHVLGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 75 --~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (300)
|. .| -..+++.|..+|.+.|++++|..+++...+. +. .|.. ..++.+...+...+++++|..++....+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 22 12 2456777888999999999998888776332 11 2222 2356677788899999999999987654
Q ss_pred c---CCCC----cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC--CC-ccccHHHHHHHHHhcCCHHHHHHHHH
Q 043969 144 V---GFDP----SVLHFTTLMDGLSRAGNLDACKYFFDEMANK----GC--MP-DVVCYTVMITSYIAAGELEKAQDLFD 209 (300)
Q Consensus 144 ~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (300)
. -+.+ -..+++.+...|...|++++|.++++..... +. .+ ....++.+...|.+.+++++|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 2 1112 2367899999999999999999999988643 11 12 24467888889999999999999988
Q ss_pred HHHH----CCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 210 GMIT----KGQ--LPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 210 ~~~~----~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
+... .|. +-...+|..|...|...|++++|.++.+...
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7543 222 2235789999999999999999999988776
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=3.7e-10 Score=89.14 Aligned_cols=259 Identities=11% Similarity=0.029 Sum_probs=186.9
Q ss_pred HhhccccHHHHHHHHHHhhhcCCCcCHHHHH--HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043969 19 TCGEVGLARKVVERFIKSKLFNFRPFKNSYN--AILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKL 96 (300)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (300)
.+.+.|+++.|++++.-....+-+.-...-+ .++..+..-+++-.|.++-+..+... .-+......-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 3567888888888887665443222222222 23333333456777777776665432 11222222222334467899
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM 176 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (300)
++|.+.+++............|++ .-.+...|+.++|++.|-++... +..+..+...+.+.|-...+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999887643322233332 33467789999999999887654 3446778888899999999999999999887
Q ss_pred HhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 043969 177 ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL 256 (300)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (300)
... ++.|+...+.|...|-+.|+-..|.+.+-+--.- ++-+..+...|..-|....-+++++..|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 665 5667888999999999999999999877654433 556889999999999999999999999998764 689999
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHc
Q 043969 257 VYNTLVSNL-RNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 257 ~~~~li~~~-~~~g~~~~a~~~~~~~~~~ 284 (300)
-|..++.+| .+.|++..|+.+++....+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999988766 6789999999999988765
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.1e-09 Score=87.13 Aligned_cols=223 Identities=12% Similarity=0.047 Sum_probs=143.7
Q ss_pred hhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 043969 20 CGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF 99 (300)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (300)
+.-.|+...+.+.|+........++. .|.-+..+|....+.++..+.|....+..+. ++.+|..-.....-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 33456777777777776665433332 2666666777777777777777777766543 566666666666677777777
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
..=|++..+.. +.+...|..+.-+..+.+.+++++..|++.++. +|..+..|+.....+...++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 77777777654 334455556666666677777777788777766 5666677777777777778888888777776654
Q ss_pred CCC-----CccccHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 180 GCM-----PDVVCYT--VMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 180 ~~~-----~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
... .+..++. .++ .+.-.+++..|..++.+..+...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 1111111 111 111236777777777777765433 455677777777777777777777776654
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=3.5e-09 Score=76.30 Aligned_cols=195 Identities=11% Similarity=0.030 Sum_probs=115.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 84 NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
..+.-.|.+.|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 334455666666666666666666553 3344556666666666666666666666666542 33445566666666666
Q ss_pred CCHHHHHHHHHHHHhCCC-CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 043969 164 GNLDACKYFFDEMANKGC-MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTM 242 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 242 (300)
|++++|...|+.....-. .-...+|..+.-+..+.|+.+.|...|++..+.... ...+...+.......|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 666666666666654311 112345666666666666666666666666655322 334455566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 243 MKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
++.....+. ++..+....|+.-...|+.+.+-++=..+.
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 666665543 566666666666666666666655444443
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.6e-08 Score=86.79 Aligned_cols=273 Identities=14% Similarity=0.055 Sum_probs=195.3
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCC--cCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFR--PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNI 85 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (300)
-++...+.|...+.-.|++..++++...+...... .-...|..+.+++-..|++++|...|.+..+....--...+.-
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46778888999999999999999999887765321 1123688899999999999999999988877632211334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCC----ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD----KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (300)
+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 6788999999999999999998774 556677777777777664 4566777777776653 557777877777666
Q ss_pred hCCCHHHHHHHHHHHH----hCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC------CHHHHHHHHH
Q 043969 162 RAGNLDACKYFFDEMA----NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK---GQLP------NVFTYNSMIR 228 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p------~~~~~~~l~~ 228 (300)
...- ..++..|.... ..+..+.....|.+.......|++++|...|...... ...+ +..+--.+..
T Consensus 426 ~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 5444 34466665543 4455577788899999999999999999999887654 1222 3323344666
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 229 GFCMAGKFDEACTMMKEMESRGCNPNF-LVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
..-..++++.|.+.+..+.+. .|+- ..|-.+.......+...+|...+++..+-+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 777778889999999888875 3443 334444333344577888888888888765
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3.7e-09 Score=84.17 Aligned_cols=226 Identities=12% Similarity=0.024 Sum_probs=178.8
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHH
Q 043969 55 LLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAA 134 (300)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (300)
+.-.|+.-.|.+-|+..+.....+ ...|.-+..+|....+.++..+.|....+.+ +.++.+|..-.....-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 345578888999999998875543 3337777788999999999999999998886 56788898888888888999999
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 135 LNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
..=|++.+... +-+...|..+.-+..+.+.++++...|++..++ ++-.+..|+.....+...++++.|.+.|+...+.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998863 335566777777778889999999999999887 4556789999999999999999999999998875
Q ss_pred CCC-----CCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 215 GQL-----PNVFT-YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 215 ~~~-----p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
... .+... .+..+-.+-..+++..|.+++++..+.. +-....|..|.+.-.+.|+.++|+++|++....-
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222 11111 1222222335689999999999999863 2245789999999999999999999999876543
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=1.5e-08 Score=73.14 Aligned_cols=207 Identities=12% Similarity=0.008 Sum_probs=168.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
+...+.-.|...|+...|..-+++.++..+. +..+|..+...|-+.|+.+.|.+.|++..+.. +-+..+.|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 5667788899999999999999999988644 67788889999999999999999999998875 456778888888999
Q ss_pred cCCChHHHHHHHHHHHHcCC-CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHH
Q 043969 127 KGDKPLAALNLLNHMKEVGF-DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQ 205 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 205 (300)
..|++++|...|++...... .....+|..+.-+..+.|+.+.|...|+...+.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887632 2234678888888899999999999999988763 224456777888888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043969 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN 259 (300)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (300)
.+++.....+. ++..+....|+.-...|+.+.+.+.=..+... -|...-+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 99999887765 78888888888888899988888776666654 44544443
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.30 E-value=8.2e-10 Score=85.71 Aligned_cols=251 Identities=12% Similarity=0.086 Sum_probs=165.3
Q ss_pred HhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043969 19 TCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQ 98 (300)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (300)
.+.-.|++.+++.... ........+......+.+++...|+++.++ .+..... +|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444688888886665 333322233445667788888889877543 4443333 6677766666655544455566
Q ss_pred HHHHHHHHHhCCCCCCHhHH-HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043969 99 FHRLLDEMGRSGFSPDFHTY-NILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177 (300)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (300)
+..-++........++..++ ......+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66555554433323223333 33335677789999999887653 355666778889999999999999999998
Q ss_pred hCCCCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043969 178 NKGCMPDVVCYTVMITSYIA----AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253 (300)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (300)
+.. +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+..+.+ +-
T Consensus 159 ~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 753 34455555555543 33689999999998765 56788999999999999999999999999887653 33
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 043969 254 NFLVYNTLVSNLRNAGKL-AEAHEVIRHMVEKG 285 (300)
Q Consensus 254 ~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~ 285 (300)
+..+...++.+....|+. +.+.++++++.+..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 566777777777777877 77888888888765
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.4e-08 Score=78.09 Aligned_cols=269 Identities=9% Similarity=-0.022 Sum_probs=157.0
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHH-HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKN-SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNI 85 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (300)
+-+......+.+.+...|+..++...|++.... .|+.. ....-.-.+.+.|+++....+...+.... +.....|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 334444555555555555555555555554433 22221 11111122234455555444444444321 112223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (300)
-........+++.|+.+-++..+.. +.+...+..-...+...+++++|.-.|+..+... |-+...|..|+..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 3333344555666666666655543 2334444444455666677777777777766542 3455677777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCccccHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 043969 166 LDACKYFFDEMANKGCMPDVVCYTVMI-TSYI-AAGELEKAQDLFDGMITKGQLPN-VFTYNSMIRGFCMAGKFDEACTM 242 (300)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 242 (300)
+.+|...-++..+. ++-+..+...+. ..+. ...--++|.+++++-... .|+ ....+.+...|...|..+.++.+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 77776666555443 122333333331 1111 122235667776665543 344 34567788889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 243 MKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+++.... .||....+.|.+.+...+.+.+|+..|...+..+
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9988874 7899999999999999999999999999998876
No 68
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.28 E-value=1.1e-07 Score=78.77 Aligned_cols=265 Identities=10% Similarity=0.052 Sum_probs=194.5
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043969 11 RTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAK 90 (300)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (300)
.||..-...|.+.+.++-|..+|....+.. +-+...|......=-..|..+....+|+++...-++ ....|-.....+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHH
Confidence 345555556666666777777777666542 344557777777667778888888888888876433 555666666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHH
Q 043969 91 YRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACK 170 (300)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (300)
-..|+...|..++....+.. +.+..+|-..+..-....+++.|..+|.+.... .|+...|..-+..---.++.++|.
T Consensus 595 w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 77888888888888887764 446778888888888888888888888887764 566677776666667778888888
Q ss_pred HHHHHHHhCCCCCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 171 YFFDEMANKGCMPD-VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 171 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
+++++..+. .|+ ...|..+.+.+-+.++.+.|.+.|..-.+. .+-.+..|-.+...=-+.|..-+|..++++..-.
T Consensus 672 rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 888887775 344 345667777788888888888877765544 3334566777777777778888899999888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 250 GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
+ +-+...|-..|+.=.+.|+.+.|..+..+.++.
T Consensus 749 N-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 749 N-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred C-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 346778888888888999999998888877764
No 69
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=2.4e-10 Score=96.78 Aligned_cols=233 Identities=14% Similarity=0.174 Sum_probs=160.8
Q ss_pred HHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043969 32 RFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF 111 (300)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 111 (300)
.+..+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666789999999999999999999999998 9999988877778899999999999999887775
Q ss_pred CCCHhHHHHHHHHHhcCCChHH---HHHHHHHHH----HcCCCCcHhhH--------------HHHHHHHHhCCCHHHHH
Q 043969 112 SPDFHTYNILLHVLGKGDKPLA---ALNLLNHMK----EVGFDPSVLHF--------------TTLMDGLSRAGNLDACK 170 (300)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~ 170 (300)
.|...+|..|..+|...||... +.+.+..+. ..|+-.....+ ...+......|-++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999765 222122221 11221111111 11222223334445554
Q ss_pred HHHHHHHhCCCCCccccHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 171 YFFDEMANKGCMPDVVCYTVMITSYIAAG-ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
+++..+....- + .+...+++-+.... .+++-..+-+...+ .|+..+|..++.+-..+|+.+.|..++.+|.+.
T Consensus 160 kll~~~Pvsa~--~-~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAW--N-APFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCcccc--c-chHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 44444322110 0 01111233222222 23333333333332 589999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 250 GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|++.+..-|..|+-+ .++..-+..++.-|.+.|
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g 266 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG 266 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhc
Confidence 999999888888765 888888888889898887
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.3e-08 Score=82.50 Aligned_cols=253 Identities=12% Similarity=0.001 Sum_probs=195.3
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIV 86 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (300)
|+....+..-|..+...|+..+.+.+=.++.... +-...+|-++..-|.-.|+..+|...|.+....... =...|-.+
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~f 352 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAF 352 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHH
Confidence 5566667777778888888877777766666542 333448999999888899999999999988765422 24578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCH
Q 043969 87 MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (300)
...++-.+..|+|+..+....+.= +-...-+--+.--|.+.++.+.|.+.|.+.... .|.|+...+-+.-.....+.+
T Consensus 353 ghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhh
Confidence 999999999999999988775541 111112233344578899999999999999887 466788888888788888999
Q ss_pred HHHHHHHHHHHhC--CCC----CccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 043969 167 DACKYFFDEMANK--GCM----PDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240 (300)
Q Consensus 167 ~~a~~~~~~~~~~--~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 240 (300)
.+|...|+..... .+. .-..+++.|..++.+.+.+++|+..+++...... -+..++..+.-.|...|+++.|.
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHH
Confidence 9999999887632 111 1234578899999999999999999999988744 48999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043969 241 TMMKEMESRGCNPNFLVYNTLVSNLR 266 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (300)
+.|.+... +.|+..+...++..+.
T Consensus 510 d~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 510 DHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99998876 5788777777766544
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.6e-07 Score=76.38 Aligned_cols=263 Identities=11% Similarity=0.003 Sum_probs=153.6
Q ss_pred HhhccccHHHHHHHHHHhhhcCCCcCHHHHHH---HHHHHHccCcHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcC
Q 043969 19 TCGEVGLARKVVERFIKSKLFNFRPFKNSYNA---ILHALLGIRQYKLIEWVYQQMSDEGYAP-DILTYNIVMCAKYRLG 94 (300)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 94 (300)
.+...|++++|.+.+++..... +.+...+.. ........+..+.+.+.+.... ...| .......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcC
Confidence 4456788888988888876653 223333332 1111222445555555555411 1223 2334445556778889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCcH--hhHHHHHHHHHhCCCHHHHHH
Q 043969 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGF-DPSV--LHFTTLMDGLSRAGNLDACKY 171 (300)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~ 171 (300)
++++|.+.+++..+.. +.+...+..+...+...|++++|...+++...... .++. ..|..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999988775 44566778888888899999999999988876532 1222 234567778889999999999
Q ss_pred HHHHHHhCCC-CCccccH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHH
Q 043969 172 FFDEMANKGC-MPDVVCY-T--VMITSYIAAGELEKAQDL--F-DGMITKGQ-LPNVFTYNSMIRGFCMAGKFDEACTMM 243 (300)
Q Consensus 172 ~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~-~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (300)
+++....... .+..... + .++.-+...|..+.+... + ........ ............++...|+.++|..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9988754321 1111111 1 222223333432222222 1 11111100 111222235677778889999999999
Q ss_pred HHHHHCCCC------CCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcC
Q 043969 244 KEMESRGCN------PNFLVYNTLVS--NLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 244 ~~~~~~~~~------~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+.+...... ....+-..++. ++...|+.++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888763211 01112222333 3568899999999998887654
No 72
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.21 E-value=4.1e-07 Score=75.48 Aligned_cols=232 Identities=9% Similarity=-0.020 Sum_probs=128.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
+|..-...|.+.+.++-|..+|...++-- +.+...|......=-..|..++...+++++...- +-....|-....-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 44444444444555555555555555432 2244445444444444555666666666655541 223334444445555
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQD 206 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 206 (300)
..|+...|..++....+.. +.+...|-+.+..-....+++.|..+|...... .|+...|.--+..-.-.++.++|++
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 5666666666666666552 334555666666666666667777666666553 4566666655555555666677777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 207 LFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++.....|-.+.+.=.+.|.+-.|..++++..-++
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 77666654 2222345566666666666666666665443332 22233444444444456667777777777766655
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=1.1e-07 Score=79.33 Aligned_cols=229 Identities=18% Similarity=0.179 Sum_probs=156.8
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH-HHHHHHHhc---
Q 043969 52 LHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTY-NILLHVLGK--- 127 (300)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~--- 127 (300)
...+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.+ |+...| ..+..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999875544 33345566677789999999999999999999986 555554 455554422
Q ss_pred --CCChHHHHHHHHHHHHcCCC--------C-----------------------cHhhHHHHHHHHHhCCCHHHHHHHHH
Q 043969 128 --GDKPLAALNLLNHMKEVGFD--------P-----------------------SVLHFTTLMDGLSRAGNLDACKYFFD 174 (300)
Q Consensus 128 --~~~~~~a~~~~~~~~~~~~~--------~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (300)
..+.+...++++++...-.. . -+.+|+.+-..|.......-...++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 22456666677666433100 0 01223444444444444444445555
Q ss_pred HHHhC----C----------CCCccc--cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 043969 175 EMANK----G----------CMPDVV--CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE 238 (300)
Q Consensus 175 ~~~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (300)
..... + -.|+.. ++..+...|-..|++++|++++++.++... ..+..|..-.+.+-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHH
Confidence 44322 1 123332 345567778889999999999999988732 247788888999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 239 ACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|.+.++....... -|...-+..+..+.+.|++++|.+++......+
T Consensus 247 Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 247 AAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 9999999988643 255666667778899999999999999888766
No 74
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=5.6e-07 Score=71.98 Aligned_cols=275 Identities=9% Similarity=0.085 Sum_probs=165.9
Q ss_pred CCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhC-CCC-CCHhhH
Q 043969 6 FPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDE-GYA-PDILTY 83 (300)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~ 83 (300)
..|+...|.+.++.-.+-..++.|..++++.... .|++.+|-...+.=.++|+...+..+|+...+. |-. .+...+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4688888888888888888888888888876554 577777777777777777777777777766553 100 011112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH--------------------------------------------HHhCCCCCCHhHHH
Q 043969 84 NIVMCAKYRLGKLDQFHRLLDE--------------------------------------------MGRSGFSPDFHTYN 119 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~--------------------------------------------~~~~~~~~~~~~~~ 119 (300)
.+...-=.+...++.|.-+|+- +.+.+ +.|-.+|-
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWf 326 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHH
Confidence 2221111111222222222211 11111 44566777
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHh--hHHHHHH--------HHHhCCCHHHHHHHHHHHHhC----------
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPSVL--HFTTLMD--------GLSRAGNLDACKYFFDEMANK---------- 179 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~--------~~~~~~~~~~a~~~~~~~~~~---------- 179 (300)
-.++.-...|+.+...++|++.... ++|-.. .|...|- .=....+++.+.++|+...+.
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 7777777788888888888888765 444221 1211111 112345666666666554432
Q ss_pred --------------------------CCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043969 180 --------------------------GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233 (300)
Q Consensus 180 --------------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (300)
|..|-..+|-.-|..-.+.+++|.+..++.+..+-+.. |..+|......=...
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHh
Confidence 23444555555555556666777777777777776433 667777777777777
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 234 GKFDEACTMMKEMESRGC-NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|+.+.|..+|.-.++... .-....|.+.|.-=...|.++.|..+++++++..
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 888888888887776421 1223445555555577888889999998888876
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.16 E-value=5.3e-07 Score=73.35 Aligned_cols=270 Identities=11% Similarity=0.050 Sum_probs=164.3
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhcC-CCcCHH-HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLFN-FRPFKN-SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
...|..+...+...++.+.+...+....... ..++.. ........+...|++++|.+.+++..+..+. +...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 3445556666666677777666665543322 122221 2223344567789999999999999887433 4444442 2
Q ss_pred HHHH----hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 88 CAKY----RLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 88 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
..+. ..+..+.+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 2222 2455555555555421 1112223444566678889999999999999999874 44567788888999999
Q ss_pred CCHHHHHHHHHHHHhCCC-CCcc--ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCCH
Q 043969 164 GNLDACKYFFDEMANKGC-MPDV--VCYTVMITSYIAAGELEKAQDLFDGMITKGQ-LPNVFTY-N--SMIRGFCMAGKF 236 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~~ 236 (300)
|++++|...++....... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999998876532 1222 2355678889999999999999999864422 1222211 1 223333344433
Q ss_pred HHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 237 DEACTM--MKEMESRGC--NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 237 ~~a~~~--~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
..+.++ +........ ............++...|+.+.|.+.++.+..
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 332222 111111111 11112223456677899999999999998876
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.12 E-value=8.2e-09 Score=80.21 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=151.4
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHH
Q 043969 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAP-DILTYNIVMCAK 90 (300)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 90 (300)
....+.+++...|+.+.++.-+.. .. .|.......+...+...++.+.+..-+++.......+ +..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~---~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKK---SS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-T---TS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHhcc---CC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 445566778888887766544433 22 5666666656555544355556666565555443332 332223333566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH----hCCCH
Q 043969 91 YRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS----RAGNL 166 (300)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 166 (300)
...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.. .| .+...+..++. ..+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 7789999999888642 467788888999999999999999999998753 33 33444444443 34579
Q ss_pred HHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHH
Q 043969 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF-DEACTMMKE 245 (300)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~ 245 (300)
.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+.. +..+...++-+....|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999999998765 5678888999999999999999999999998776543 677777888888888887 677788888
Q ss_pred HHHC
Q 043969 246 MESR 249 (300)
Q Consensus 246 ~~~~ 249 (300)
+...
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 8764
No 77
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.08 E-value=4.2e-07 Score=81.25 Aligned_cols=233 Identities=12% Similarity=0.150 Sum_probs=179.2
Q ss_pred CcCHH-HHHHHHHHHHccCcHHHHHHHHHHhhhC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 043969 42 RPFKN-SYNAILHALLGIRQYKLIEWVYQQMSDE-GYAP---DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH 116 (300)
Q Consensus 42 ~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (300)
.||.. .|-.-|....+.++.+.|.+++++++.. ++.- -...|.++++.-...|.-+...++|+++.+.. ....
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 45544 7888888888999999999999998764 2211 23467777777777788888999999998762 3456
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC---ccccHHHHHH
Q 043969 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP---DVVCYTVMIT 193 (300)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~ 193 (300)
+|..|...|.+.+..++|.++++.|.+. +......|...+..+.+.++-+.|..++.+..+. -| ......-.+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 7889999999999999999999999887 4467788999999999999999999999888765 23 3445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCH
Q 043969 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF--LVYNTLVSNLRNAGKL 271 (300)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 271 (300)
.-.+.|+.+.+..+|........+ ....|+..++.=.++|+.+.+..+|++....++.|-. ..|...+..=-..|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 677899999999999998877433 6788999999999999999999999999998877654 3455555544455665
Q ss_pred HHHHHHHHH
Q 043969 272 AEAHEVIRH 280 (300)
Q Consensus 272 ~~a~~~~~~ 280 (300)
+.+..+=.+
T Consensus 1688 ~~vE~VKar 1696 (1710)
T KOG1070|consen 1688 KNVEYVKAR 1696 (1710)
T ss_pred hhHHHHHHH
Confidence 544444333
No 78
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=7.9e-08 Score=78.26 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=169.4
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCCh
Q 043969 52 LHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKP 131 (300)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (300)
..-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34456888999999999999988644 78899999999999999999999999988875 44567777888889999999
Q ss_pred HHHHHHHHHHHHcCCCC--------cHhhHHHHHHHHHhCCCHHHHHHHHHHH-HhCCCCCccccHHHHHHHHHhcCCHH
Q 043969 132 LAALNLLNHMKEVGFDP--------SVLHFTTLMDGLSRAGNLDACKYFFDEM-ANKGCMPDVVCYTVMITSYIAAGELE 202 (300)
Q Consensus 132 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (300)
..|++.++.-+...++- +...-.. ..+.....+....++|-++ ...+..+|......|--.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999998876543110 0000000 1112222344555555544 44454577788888888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF-LVYNTLVSNLRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 281 (300)
+|.+.|+..+..... |..+||.|...++...+.++|+..|++.++. .|+. ++...|.-+|...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999886433 7889999999999999999999999999985 5653 45555667799999999999988776
Q ss_pred HH
Q 043969 282 VE 283 (300)
Q Consensus 282 ~~ 283 (300)
+.
T Consensus 525 L~ 526 (579)
T KOG1125|consen 525 LS 526 (579)
T ss_pred HH
Confidence 64
No 79
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=1.8e-06 Score=68.22 Aligned_cols=226 Identities=8% Similarity=0.011 Sum_probs=125.2
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCCh-
Q 043969 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG-KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKP- 131 (300)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 131 (300)
.+...++.++|+.+..++++..+. +..+|+.--.++...+ ++++++..++++.... +-+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 334445666666666666665322 3445554444444555 4566777766666553 33444555444444444442
Q ss_pred -HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc---CC----HHH
Q 043969 132 -LAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA---GE----LEK 203 (300)
Q Consensus 132 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~ 203 (300)
++++.+++.+.+.. +-+..+|+....++...|++++++..++.+++.+.. +...|+....++.+. |. .++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 45566666666553 335566666666666667777777777777665432 445555554444333 22 235
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------
Q 043969 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMA----GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAG---------- 269 (300)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------- 269 (300)
++++..+++.... -|...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|....
T Consensus 202 el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 5566655555433 2556666666666552 33455666666655542 234556666777665432
Q ss_pred --------CHHHHHHHHHHHHHcC
Q 043969 270 --------KLAEAHEVIRHMVEKG 285 (300)
Q Consensus 270 --------~~~~a~~~~~~~~~~~ 285 (300)
..++|.++++.+.+.+
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d 303 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVAD 303 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhC
Confidence 3467888887774333
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=6.2e-07 Score=67.57 Aligned_cols=273 Identities=11% Similarity=0.074 Sum_probs=161.6
Q ss_pred CccCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH
Q 043969 1 MIENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI 80 (300)
Q Consensus 1 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (300)
|...|+....--+++++..+.+..++.+|++++....+.. +.+....+.+..+|....++..|-..++++-+. .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 4455666555567778888888889999999988776653 336668888999999999999999999998776 3444
Q ss_pred hhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC-------------------C---------CC---CHhHHHHHHHHHhcC
Q 043969 81 LTYNIV-MCAKYRLGKLDQFHRLLDEMGRSG-------------------F---------SP---DFHTYNILLHVLGKG 128 (300)
Q Consensus 81 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~-------------------~---------~~---~~~~~~~l~~~~~~~ 128 (300)
.-|... ...+.+.+.+..|+++...|.... + .| +..+.+...-...+.
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc
Confidence 444332 245556667777777666554310 0 11 122222222334567
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-------------cc----------
Q 043969 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP-------------DV---------- 185 (300)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------- 185 (300)
|+++.|.+-|+...+.+--.....|+..+ +..+.++...|.+...+++++|++- |+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 88999999998887754333455677665 4556788899999999988876532 11
Q ss_pred -----ccHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043969 186 -----VCYTVMITSYIAAGELEKAQDLFDGMITK-GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN 259 (300)
Q Consensus 186 -----~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (300)
..+|.-...+.+.|+++.|.+-+-.|.-. ....|+.|...+.-.=. .+++-+..+-+.-+...+ +....||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHH
Confidence 11233333455678888888877776432 12233444433322211 122333333333333321 12334555
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 043969 260 TLVSNLRNAGKLAEAHEVIR 279 (300)
Q Consensus 260 ~li~~~~~~g~~~~a~~~~~ 279 (300)
.++-.|++..-++.|-.++-
T Consensus 315 NlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHh
Confidence 55555555555555544443
No 81
>PF12854 PPR_1: PPR repeat
Probab=99.00 E-value=6.6e-10 Score=55.91 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCCCCchHHHHHHHHHhhccccHHHHHHHHHHh
Q 043969 4 NGFPTTARTFNILICTCGEVGLARKVVERFIKS 36 (300)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 36 (300)
+|++||..+|++||++|++.|+.++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 366677777777777777777777777776665
No 82
>PLN02789 farnesyltranstransferase
Probab=98.99 E-value=3.2e-06 Score=66.80 Aligned_cols=215 Identities=8% Similarity=0.056 Sum_probs=156.3
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCH-HHHHHHHHHHHccC-cHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043969 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFK-NSYNAILHALLGIR-QYKLIEWVYQQMSDEGYAPDILTYNIVMCA 89 (300)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (300)
++..+-..+...+..++|+....+.... .|+. .+|+.-..++...| .+++++..++++.+..++ +..+|+.-...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 3445556667778899999999998876 3443 36766666666777 579999999999988655 66677766555
Q ss_pred HHhcCCH--HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC---C
Q 043969 90 KYRLGKL--DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA---G 164 (300)
Q Consensus 90 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 164 (300)
+.+.++. ++++.+++.+.+.. +-+..+|+....++...|+++++++.++++.+... .+...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc
Confidence 6666653 67888888888775 45788999999999999999999999999998764 3556666665555443 2
Q ss_pred CH----HHHHHHHHHHHhCCCCCccccHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043969 165 NL----DACKYFFDEMANKGCMPDVVCYTVMITSYIAA----GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233 (300)
Q Consensus 165 ~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (300)
.. +.........+... +-|...|+.+...+... ++..+|.+++.+..+.++ .+......|+..|+..
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEG 268 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhh
Confidence 22 45666666666553 34778888888888773 445678888888776543 3677888889988763
No 83
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.98 E-value=1.4e-06 Score=78.16 Aligned_cols=236 Identities=14% Similarity=0.089 Sum_probs=183.6
Q ss_pred CCCchHHHHHHHHHhhccccHHHHHHHHHHhhh-cCCCcCHH---HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh
Q 043969 6 FPTTARTFNILICTCGEVGLARKVVERFIKSKL-FNFRPFKN---SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDIL 81 (300)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (300)
-|-+...|-..|....+.++.++|.++.++... .+++-... .|.++++.-...|.-+...++|+++.+.. -...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 355667788888889999999999999998754 22222222 77888887777888899999999998863 2356
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC--cHhhHHHHHHH
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDP--SVLHFTTLMDG 159 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 159 (300)
.|..|...|.+.+.+++|.++++.|.+.= .....+|...+..+.+.++-++|..++.+..+. ++- ........+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHH
Confidence 78889999999999999999999997752 357889999999999999999999999998875 222 23344555666
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHH
Q 043969 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV--FTYNSMIRGFCMAGKFD 237 (300)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~ 237 (300)
-.+.|+.+.++.+|+...... +--...|+..|..-.++|+.+.+..+|++....++.|-- ..|...+..=-+.|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 788999999999999988763 336778999999999999999999999999998876643 45666666555666655
Q ss_pred HHHHHHHHH
Q 043969 238 EACTMMKEM 246 (300)
Q Consensus 238 ~a~~~~~~~ 246 (300)
.+..+=.+.
T Consensus 1689 ~vE~VKarA 1697 (1710)
T KOG1070|consen 1689 NVEYVKARA 1697 (1710)
T ss_pred hHHHHHHHH
Confidence 555443333
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.96 E-value=4.9e-07 Score=68.96 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=29.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 226 MIRGFCMAGKFDEACTMMKEMESRG--CNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
+...+.+.|++++|...+++..+.. -+.....+..+..++...|++++|..+++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344555555555555555555431 111234455555555555666655555555543
No 85
>PF12854 PPR_1: PPR repeat
Probab=98.96 E-value=1e-09 Score=55.20 Aligned_cols=30 Identities=47% Similarity=0.915 Sum_probs=12.4
Q ss_pred CCCccccHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDG 210 (300)
Q Consensus 181 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 210 (300)
+.||..+|+.||.+|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444443
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=5.1e-07 Score=73.71 Aligned_cols=249 Identities=11% Similarity=0.029 Sum_probs=185.8
Q ss_pred HhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043969 19 TCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQ 98 (300)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (300)
.+.+.|+..+|.-.|+.....+ +-+...|..|.......++-..|+..+++..+..+. |....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 4567888999999999877764 455669999999999999999999999999988644 78888888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHH-----------HHHhcCCChHHHHHHHHHH-HHcCCCCcHhhHHHHHHHHHhCCCH
Q 043969 99 FHRLLDEMGRSGFSPDFHTYNILL-----------HVLGKGDKPLAALNLLNHM-KEVGFDPSVLHFTTLMDGLSRAGNL 166 (300)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (300)
|...++.-..... | |..+. ..+..........++|-++ ...+..+|+.....|.-.|--.|++
T Consensus 372 Al~~L~~Wi~~~p-~----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKP-K----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCc-c----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9999988755431 1 00000 1112222233444555544 3445457778888888889999999
Q ss_pred HHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN-VFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
++|.+.|+...... +-|...||.|...++...+.++|+.-|++.++. +|+ +.+...|..+|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999998763 336788999999999999999999999999985 455 34556688889999999999998876
Q ss_pred HHHC---C------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043969 246 MESR---G------CNPNFLVYNTLVSNLRNAGKLAEAHEV 277 (300)
Q Consensus 246 ~~~~---~------~~~~~~~~~~li~~~~~~g~~~~a~~~ 277 (300)
.+.. + ..++...|.+|=.++.-.++.|.+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 6532 1 123445777777777777877755443
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.95 E-value=6.6e-07 Score=68.24 Aligned_cols=169 Identities=8% Similarity=-0.012 Sum_probs=128.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH--hh
Q 043969 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF---HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV--LH 152 (300)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 152 (300)
.....+......+...|++++|...++++.... +.+. .++..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356677788888999999999999999987763 2222 46677888999999999999999999886322111 14
Q ss_pred HHHHHHHHHhC--------CCHHHHHHHHHHHHhCCCCCccc-cHH-----------------HHHHHHHhcCCHHHHHH
Q 043969 153 FTTLMDGLSRA--------GNLDACKYFFDEMANKGCMPDVV-CYT-----------------VMITSYIAAGELEKAQD 206 (300)
Q Consensus 153 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~-----------------~li~~~~~~~~~~~a~~ 206 (300)
+..+..++... |+.++|...++.+... .|+.. .+. .+...+.+.|++++|..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55555556554 7899999999999876 34432 221 34456778899999999
Q ss_pred HHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 207 LFDGMITKGQ--LPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 207 ~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.+....+... +.....+..+..++...|++++|...++.+...
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999987632 224578899999999999999999999888764
No 88
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=5.9e-06 Score=61.34 Aligned_cols=264 Identities=12% Similarity=0.086 Sum_probs=167.8
Q ss_pred cCCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhh
Q 043969 3 ENGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILT 82 (300)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (300)
..+..|+...|+ ++.+.-.|++.+++..-....... -+...-.-+-++|...|++..... +.+.. -.|....
T Consensus 3 ~~~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqA 74 (299)
T KOG3081|consen 3 SMEAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQA 74 (299)
T ss_pred ccccCcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHH
Confidence 334445544454 344455688888887776654432 223333445667777776654432 22222 2444444
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 043969 83 YNIVMCAKYRLGKLDQFH-RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (300)
...+.......++.+.-. ++.+.+.......+......-...|...+++++|++...... +......=+..+.
T Consensus 75 vr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 75 VRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHH
Confidence 444444444445544443 344555444333333444444557889999999998887632 2233333345667
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 043969 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA----AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (300)
+..+.+.|...++.|.+.. +..|.+.|..++.+ .+.+..|.-+|++|.++ ..|+..+.+....++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHH
Confidence 7788899999999998752 66677777777665 45688999999999876 6789999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 043969 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK-LAEAHEVIRHMVEKG 285 (300)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~ 285 (300)
+|..++++...... .++.+...++..-...|. .+-..+.+.+++...
T Consensus 225 eAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 225 EAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 99999999988643 355666666555445554 455567777777665
No 89
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=4.2e-07 Score=76.19 Aligned_cols=217 Identities=12% Similarity=0.118 Sum_probs=164.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK 127 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (300)
-..+...+.+.|-...|..+|+++ ..|..++.+|...|+.++|..+..+..+. +||+..|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 355667777888888888888764 45677888899999999999988887774 7899999999888877
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHH
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDL 207 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 207 (300)
..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-..--+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77788888887765432 11122222334688888888888776653 33556777777778888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 208 FDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|........ -+...||.+-.+|.+.++-.+|...+.+..+-+ .-+...|...+....+.|.+++|.+.+.++.+..
T Consensus 542 F~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 988876532 257789999999999999999999999988876 4455667777777889999999999998887654
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.88 E-value=1.5e-06 Score=64.26 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 84 NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
..+-..+...|+-+....+........ +.|.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445566666777777776666643321 3455555667777777888888888888777653 66777788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 043969 164 GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMM 243 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (300)
|+.+.|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888887777652 224556677777777788888888888777766433 5666667777777788888887776
Q ss_pred HHHH
Q 043969 244 KEME 247 (300)
Q Consensus 244 ~~~~ 247 (300)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=7.8e-07 Score=74.63 Aligned_cols=239 Identities=12% Similarity=0.069 Sum_probs=178.0
Q ss_pred CCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH
Q 043969 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84 (300)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (300)
++||--..=..+...+...|-...|+.++++.. .|.-.+-+|...|+..+|..+..+..++ +||...|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 344444444555677778888999999998853 5667788899999999999999888874 77888998
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC
Q 043969 85 IVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164 (300)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (300)
.+........-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+.-+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 8888776666788888887765332 11122222334788999999998877763 456678888888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 043969 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244 (300)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (300)
+++.|.+.|..-.... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-.....|.+++|.+.+.
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999998887652 2356789999999999999999999999998876 3366778888888889999999999998
Q ss_pred HHHHCCC-CCCHHHHHHHHHH
Q 043969 245 EMESRGC-NPNFLVYNTLVSN 264 (300)
Q Consensus 245 ~~~~~~~-~~~~~~~~~li~~ 264 (300)
++.+... ..|......++..
T Consensus 612 rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHhhhhcccchhhHHHHHH
Confidence 8875311 1244444444443
No 92
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=3.9e-06 Score=62.12 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=136.2
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHH
Q 043969 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193 (300)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (300)
|..+ ..+-..+...|+-+....+....... .+.+......++....+.|++..|...+++..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4455 66667788888888888887776543 34465666778899999999999999999998763 678999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043969 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAE 273 (300)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 273 (300)
+|-+.|++++|..-|.+..+.... +...++.+...+.-.|+.+.|..++......+. -|...-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHH
Confidence 999999999999999999987433 567788899999999999999999999887643 366777778888899999999
Q ss_pred HHHHHHHHHHcC
Q 043969 274 AHEVIRHMVEKG 285 (300)
Q Consensus 274 a~~~~~~~~~~~ 285 (300)
|..+...-...-
T Consensus 221 A~~i~~~e~~~~ 232 (257)
T COG5010 221 AEDIAVQELLSE 232 (257)
T ss_pred HHhhccccccch
Confidence 998876655443
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=3.8e-06 Score=61.82 Aligned_cols=119 Identities=12% Similarity=0.145 Sum_probs=67.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHH-HhcCC--HHHH
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSY-IAAGE--LEKA 204 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 204 (300)
.++.+++...++...+.. +.+...|..+...|...|+++.|...|+...+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444455555555555442 4455566666666666666666666666665542 22444555555542 44454 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 205 QDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665333 5556666666666666666666666666654
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=6.3e-07 Score=65.95 Aligned_cols=160 Identities=9% Similarity=0.019 Sum_probs=122.0
Q ss_pred HHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043969 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLD 97 (300)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (300)
-.|...|+++.+......... |. ..+...++.+++...++...+..+. |...|..+...+...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHH
Confidence 457788998887655533211 11 0222366778888888888877644 8899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHH-HhcCCC--hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHH
Q 043969 98 QFHRLLDEMGRSGFSPDFHTYNILLHV-LGKGDK--PLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFD 174 (300)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (300)
+|...+++..+.. +.+...+..+..+ +...|+ .++|.+++++..+.. +.+...+..+...+.+.|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998875 4577788888876 467777 599999999999874 4477888889999999999999999999
Q ss_pred HHHhCCCCCccccHHHHHHH
Q 043969 175 EMANKGCMPDVVCYTVMITS 194 (300)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~ 194 (300)
.+.+.. +|+..- ..+|.+
T Consensus 169 ~aL~l~-~~~~~r-~~~i~~ 186 (198)
T PRK10370 169 KVLDLN-SPRVNR-TQLVES 186 (198)
T ss_pred HHHhhC-CCCccH-HHHHHH
Confidence 998873 445444 344454
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.82 E-value=6.4e-06 Score=72.74 Aligned_cols=212 Identities=8% Similarity=0.032 Sum_probs=121.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH------------------HHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL------------------LDEMGR 108 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------------~~~~~~ 108 (300)
.+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ ...+..
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHh
Confidence 5555666665666666666666554444211 222222222234444443333332 222222
Q ss_pred CCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccH
Q 043969 109 SGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY 188 (300)
Q Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (300)
. .-+...+..+..+|.+.|+.+++..+|+++.+.. +.++.+.|.+...|... ++++|..++......-+ +..-|
T Consensus 112 ~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~ 185 (906)
T PRK14720 112 Y--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQY 185 (906)
T ss_pred h--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcc
Confidence 2 1233566777788888899999999999988876 55778888888888888 88888888887765411 11112
Q ss_pred HHHHHHHH-----hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043969 189 TVMITSYI-----AAGELEKAQDLFDGMITK-GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262 (300)
Q Consensus 189 ~~li~~~~-----~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (300)
+.+...+. ...+++.-..+.+.+... |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++
T Consensus 186 ~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~ 264 (906)
T PRK14720 186 VGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELI 264 (906)
T ss_pred hHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHH
Confidence 22211111 112233333333333332 222234455666677888888999999999988863 33566677777
Q ss_pred HHHH
Q 043969 263 SNLR 266 (300)
Q Consensus 263 ~~~~ 266 (300)
.+|.
T Consensus 265 ~~y~ 268 (906)
T PRK14720 265 RFYK 268 (906)
T ss_pred HHHH
Confidence 7765
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=2.2e-05 Score=72.09 Aligned_cols=268 Identities=13% Similarity=0.031 Sum_probs=175.4
Q ss_pred HHhhccccHHHHHHHHHHhhhcCCCcCH----HHHHHHHHHHHccCcHHHHHHHHHHhhhC----CCC-CCHhhHHHHHH
Q 043969 18 CTCGEVGLARKVVERFIKSKLFNFRPFK----NSYNAILHALLGIRQYKLIEWVYQQMSDE----GYA-PDILTYNIVMC 88 (300)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 88 (300)
..+...|++++|...+++........+. ...+.+...+...|+++.|...+++.... |.. +...++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4456788999999999886553111121 24566667778899999999999888753 111 11234455667
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCC--cHhhHHHHH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRS----GFS--P-DFHTYNILLHVLGKGDKPLAALNLLNHMKEVG--FDP--SVLHFTTLM 157 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~ 157 (300)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999998776442 211 1 12334455566777899999999988875531 111 233445566
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCC-ccccH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 043969 158 DGLSRAGNLDACKYFFDEMANKGCMP-DVVCY-----TVMITSYIAAGELEKAQDLFDGMITKGQLPN---VFTYNSMIR 228 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 228 (300)
..+...|+.+.|.+.+.......... ....+ ...+..+...|+.+.|...+........... ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 77888999999999998875421110 11111 1122444568899999999877554321111 112456777
Q ss_pred HHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 229 GFCMAGKFDEACTMMKEMESR----GCNPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
++...|++++|...+++.... |..+. ..+...+..++.+.|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888999999999999988753 33222 2455666678899999999999999998754
No 97
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=3.8e-05 Score=61.88 Aligned_cols=256 Identities=9% Similarity=0.033 Sum_probs=189.0
Q ss_pred ccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043969 22 EVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHR 101 (300)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (300)
..+++..|..+|++....+ ..+...|---+..=.+.++...|..+++..+..-+..| ..|.-.+..=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 3567888999999988765 55666777788888899999999999999987643333 344445545556799999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-C
Q 043969 102 LLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK-G 180 (300)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 180 (300)
+|+.-..- .|+...|.+.++.-.+-..++.|..++++..-. .|++.+|-.....=-++|+...+..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99988776 799999999999999999999999999998864 589999999999899999999999999888764 1
Q ss_pred C-CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHH--------HHHHHHC
Q 043969 181 C-MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN--VFTYNSMIRGFCMAGKFDEACTM--------MKEMESR 249 (300)
Q Consensus 181 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~ 249 (300)
- ..+...+.++..--.++..++.|.-+|+-..+. ++-+ ...|..+...=-+-|+....... ++.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 112334444444445577889999999988876 3223 44555555444445554433332 2233332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 250 GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
-+.|-.+|.-.++.-...|+.+...+++++.+.+-
T Consensus 318 -np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv 352 (677)
T KOG1915|consen 318 -NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV 352 (677)
T ss_pred -CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Confidence 24567788888888888899999999999998764
No 98
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.4e-05 Score=59.43 Aligned_cols=226 Identities=14% Similarity=0.138 Sum_probs=148.2
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHH-HHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKL-IEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
++..--.+-++|...|.+...+.-..... .|.......+......-++.+. ..++.+.+.......+......-.
T Consensus 40 ~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 40 DVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred hhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 33344445566666666655544433321 3333344444333333444333 334555555554443434444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh----C
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR----A 163 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 163 (300)
..|...+++++|++..... .+......=+..+.+..+.+-|.+.+++|.+.. +..+.+.|.++|.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 6788999999999988762 244444444556677888999999999998752 55666766666654 5
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHH
Q 043969 164 GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF-DEACTM 242 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~ 242 (300)
+.+..|.-+|++|.++ ..|+..+.+-...++...|++++|..++++...+... ++.+...++-+-...|.. +-..+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 6789999999999875 5789999999999999999999999999999988555 566666666555555554 445556
Q ss_pred HHHHHHC
Q 043969 243 MKEMESR 249 (300)
Q Consensus 243 ~~~~~~~ 249 (300)
+..+...
T Consensus 265 l~QLk~~ 271 (299)
T KOG3081|consen 265 LSQLKLS 271 (299)
T ss_pred HHHHHhc
Confidence 6666653
No 99
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.2e-05 Score=62.11 Aligned_cols=237 Identities=12% Similarity=0.002 Sum_probs=155.9
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 043969 42 RPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (300)
+-|+.....+...+...|+.++|+..|++..-..+. +........-.+.+.|+.+....+...+.... .-+...|-.-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 445557777888888888888888888877654211 22233333344566778877777777765432 2233444444
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCH
Q 043969 122 LHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGEL 201 (300)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 201 (300)
........+++.|+.+-++.++.. +.+...+-.-...+...+++++|.-.|+..+... +-+...|.-|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 444555677888888888777653 2344455555566778889999988888877652 23677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 043969 202 EKAQDLFDGMITKGQLPNVFTYNSMI-RGFC-MAGKFDEACTMMKEMESRGCNPNF-LVYNTLVSNLRNAGKLAEAHEVI 278 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 278 (300)
.+|..+-+...+. ..-+..+...+. ..|. ....-++|.++++.-... .|+- .....+...+...|..+++..++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 9988777765554 233555554442 2222 223457788888776654 5553 45566677788999999999999
Q ss_pred HHHHHcC
Q 043969 279 RHMVEKG 285 (300)
Q Consensus 279 ~~~~~~~ 285 (300)
++.+..-
T Consensus 462 e~~L~~~ 468 (564)
T KOG1174|consen 462 EKHLIIF 468 (564)
T ss_pred HHHHhhc
Confidence 8877643
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=5.6e-06 Score=72.06 Aligned_cols=146 Identities=11% Similarity=0.065 Sum_probs=111.3
Q ss_pred CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHH
Q 043969 112 SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVM 191 (300)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (300)
+.+...+..|.....+.|.+++|..+++...+.. |-+......+...+.+.+++++|...++...... +-+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 4567888888888888899999999999888862 3345667777888888999999999888888763 2244556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043969 192 ITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTL 261 (300)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (300)
..++.+.|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+. ..|....|+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 7788888999999999998887432 24778888888888889999999999888875 23444554443
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=3e-05 Score=59.90 Aligned_cols=270 Identities=10% Similarity=0.038 Sum_probs=174.4
Q ss_pred CchHHHHHHH---HHhhccccHHHHHHHHHHhhhcCCCcCHH-HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC--Hh
Q 043969 8 TTARTFNILI---CTCGEVGLARKVVERFIKSKLFNFRPFKN-SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD--IL 81 (300)
Q Consensus 8 ~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 81 (300)
.|+..|.++. ..|...|+.+-|+.-+.+..+. +||-. .-..-...+.+.|+++.|..-|+..++.....+ ..
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e 144 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE 144 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence 3444444443 2345555555555555555443 56543 222334456788888888888888887643211 11
Q ss_pred hH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 043969 82 TY------------NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPS 149 (300)
Q Consensus 82 ~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (300)
.+ ...+..+...|+...|+.....+.+.. +-|...+..-..+|...|++..|+.-++...+..- .+
T Consensus 145 aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-Dn 222 (504)
T KOG0624|consen 145 AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DN 222 (504)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cc
Confidence 11 122334556788888888888887664 45777777888888888888888887777766543 34
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccH----HHH---------HHHHHhcCCHHHHHHHHHHHHHCCC
Q 043969 150 VLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCY----TVM---------ITSYIAAGELEKAQDLFDGMITKGQ 216 (300)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l---------i~~~~~~~~~~~a~~~~~~~~~~~~ 216 (300)
..++-.+-..+...|+.+.++...++..+. .||...+ -.+ +......++|.++++-.+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 455555666777788888888888777665 3443221 111 1223345667777777777666533
Q ss_pred CCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 217 LPN---VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 217 ~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
... ...+..+-.++...+++.+|++...+..+. .|+ ..++.--..+|.-...+|.|..-|++..+.+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 211 233455666777888999999999998874 444 6777777788888888999999998888766
No 102
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.78 E-value=2.4e-05 Score=65.16 Aligned_cols=187 Identities=10% Similarity=0.086 Sum_probs=77.8
Q ss_pred cccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043969 23 VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (300)
.|+-++|.+........+ .-+.++|..+.-.+...+++++|++.|+.+...+.. |...+.-+.-.-++.++++.....
T Consensus 54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344444444444433322 222234444444444444455555555544444322 444444444444444444444444
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcHhhHHHHH------HHHHhCCCHHHHHHHHHH
Q 043969 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVG-FDPSVLHFTTLM------DGLSRAGNLDACKYFFDE 175 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~ 175 (300)
...+.+.. +.....|..+..++.-.|+...|..++++..+.. ..|+...+.-.. ....+.|..+.|.+.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 44443332 1223334444444444555555555555544432 123333222111 122334444444444433
Q ss_pred HHhCCCCCccccH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 176 MANKGCMPDVVCY-TVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 176 ~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
-... ..|...+ ..-...+.+.+++++|..++..+...
T Consensus 211 ~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 211 NEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 3222 1111111 22233445556666666666666554
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=6.6e-05 Score=62.67 Aligned_cols=169 Identities=12% Similarity=0.084 Sum_probs=102.8
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
-+.++|..+.-.+....++++|+..+......+ +-|...|.-+--.-++.|+++.......++.+..+. ....|..+.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~A 150 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFA 150 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHH
Confidence 356778888888888889999999999988765 455667776666667778888877777777766322 455677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHH------HHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSG-FSPDFHTYNILLH------VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGL 160 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (300)
.++.-.|+...|..+++...+.. -.|+...+..... ...+.|.++.|++.+..-... +......-..-...+
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHH
Confidence 77778888888888888876654 2355555443322 223445555554444433322 111111112223334
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 043969 161 SRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~ 179 (300)
.+.+++++|..++..+...
T Consensus 230 ~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHhhHHhHHHHHHHHHhh
Confidence 4455555555555555444
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.8e-05 Score=69.27 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=118.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (300)
.+..|..+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+.+....+..-+|... +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4567777888877888887777655432 367778888888888888888888887777765555544 46777
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCcccc--------------------------HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 159 GLSRAGNLDACKYFFDEMANKGCMPDVVC--------------------------YTVMITSYIAAGELEKAQDLFDGMI 212 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------------------~~~li~~~~~~~~~~~a~~~~~~~~ 212 (300)
+|++.+++.+.+.++. -|+... |..|...+...|++..|.+.-++.
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA- 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA- 1246 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 8888877766554431 233333 334444444444444444333221
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cChH
Q 043969 213 TKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE-----KGKY 287 (300)
Q Consensus 213 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~ 287 (300)
-+..||-.+-.+|...+.+.-| .|...++-....-...++..|...|-+++...+++..+. .|.|
T Consensus 1247 -----ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmf 1316 (1666)
T KOG0985|consen 1247 -----NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMF 1316 (1666)
T ss_pred -----cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHH
Confidence 1445566555565555544333 233333344455567777888888888887777776543 2366
Q ss_pred HHHHHHhhhhh
Q 043969 288 IHLVSKFKRYK 298 (300)
Q Consensus 288 ~~l~~~~~~~~ 298 (300)
..+.-.|++|+
T Consensus 1317 TELaiLYskyk 1327 (1666)
T KOG0985|consen 1317 TELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHHhcC
Confidence 66666666553
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=2.6e-05 Score=57.65 Aligned_cols=188 Identities=14% Similarity=0.149 Sum_probs=119.0
Q ss_pred cCcHHHHHHHHHHhhhC---C-CCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChH
Q 043969 58 IRQYKLIEWVYQQMSDE---G-YAPDILT-YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPL 132 (300)
Q Consensus 58 ~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (300)
..+.++..+++.+++.. | ..++..+ |..++-+....|+.+.|..+++.+...- +-+..+-..-...+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35667777777777642 3 3444443 4445556667778888888888776652 333333333333445567788
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 133 AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMI 212 (300)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (300)
+|+++++.+.+.. |.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888887764 445556655555666667666777777776665 45577788888888888888888888888777
Q ss_pred HCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHC
Q 043969 213 TKGQLPNVFTYNSMIRGFCMAG---KFDEACTMMKEMESR 249 (300)
Q Consensus 213 ~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 249 (300)
-.. +.+...+..+...+.-.| +.+.+.+.+.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 642 224455555655554443 455667777776664
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=7.8e-06 Score=72.21 Aligned_cols=214 Identities=9% Similarity=0.015 Sum_probs=147.3
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHH-HHHHHHHHHHccCcHHHHHHHHHHhhhCCCC----------
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKN-SYNAILHALLGIRQYKLIEWVYQQMSDEGYA---------- 77 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 77 (300)
+...+..|+..+...+++++|.++.+..... .|+.. .|..+...+.+.++.+.+..+ .+...-..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 5677899999999999999999999976665 45544 455555567777777666655 33332111
Q ss_pred --------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 043969 78 --------PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPS 149 (300)
Q Consensus 78 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (300)
-+..++..+..+|-+.|+.+++..+|+++.+.. +-|+.+.+.+...|... +.++|.+++.+....-+ +
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~ 181 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--K 181 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--h
Confidence 122566677888889999999999999999987 66788999999999999 99999999988876511 1
Q ss_pred HhhHHHHHHHHH-----hCCCHHHHHHHHHHHHhC-CCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043969 150 VLHFTTLMDGLS-----RAGNLDACKYFFDEMANK-GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTY 223 (300)
Q Consensus 150 ~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 223 (300)
..-|+.+...+. ...+.+.-..+.+.+... |..--..++-.+...|-..++++++..+++.+.+.... |....
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~ 260 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAR 260 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhH
Confidence 112222222211 122333444444444333 32334456667778888899999999999999987443 66677
Q ss_pred HHHHHHHh
Q 043969 224 NSMIRGFC 231 (300)
Q Consensus 224 ~~l~~~~~ 231 (300)
..++.+|.
T Consensus 261 ~~l~~~y~ 268 (906)
T PRK14720 261 EELIRFYK 268 (906)
T ss_pred HHHHHHHH
Confidence 77777775
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=2.4e-05 Score=63.13 Aligned_cols=200 Identities=15% Similarity=0.131 Sum_probs=111.9
Q ss_pred cHHHHHHHHHHhhhcC--CCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043969 25 LARKVVERFIKSKLFN--FRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102 (300)
Q Consensus 25 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (300)
++.++.+.-+.+...+ -.|+...+...+.+......-..+..++..-.+. .-...-|..- ..+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHH
Confidence 4455555555554432 1334445555555444333333333222222221 1122223333 344567777777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043969 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPS-VLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (300)
++.+.+.- |-|+.........+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.+|..+++..... .
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~ 404 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-D 404 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-C
Confidence 77776652 333444455556777777777777777777765 233 455556667777777777777777776655 2
Q ss_pred CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
+-|+..|..|.++|...|+..++..-..+... ..|++++|...+....+.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHHh
Confidence 44667777777777777777777666555432 135566666665555543
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=3.9e-05 Score=56.71 Aligned_cols=189 Identities=14% Similarity=0.113 Sum_probs=141.8
Q ss_pred cccHHHHHHHHHHhhhc---C-CCcCHH-HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043969 23 VGLARKVVERFIKSKLF---N-FRPFKN-SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLD 97 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (300)
..+.+++++++.++... + ..++.. .|..++-+....|+.+.|...++++.++- +-+...-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34678888888776432 3 455655 67778888889999999999999998773 223332222222344579999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043969 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177 (300)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (300)
+|+++++.+...+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999886 667788877777777788888999999888887 78899999999999999999999999999998
Q ss_pred hCCCCCccccHHHHHHHHHh---cCCHHHHHHHHHHHHHCC
Q 043969 178 NKGCMPDVVCYTVMITSYIA---AGELEKAQDLFDGMITKG 215 (300)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~ 215 (300)
-.. +.+...+..+...+.- ..+.+.|.++|.+..+..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 752 2334444455554433 346778899999888763
No 109
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.71 E-value=0.00011 Score=61.57 Aligned_cols=272 Identities=13% Similarity=0.113 Sum_probs=172.6
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhc-CCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 043969 15 ILICTCGEVGLARKVVERFIKSKLF-NFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRL 93 (300)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (300)
..+....+.++.......|+..... .+.....+|...+......+-.+.+..++++.++- ++..-+-.+..+++.
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhc
Confidence 3344445667777777777765432 22233337888888888888888899999888865 344467778888889
Q ss_pred CCHHHHHHHHHHHHhC------CCCCCHhHHHHHHHHHhcCCChHH---HHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC
Q 043969 94 GKLDQFHRLLDEMGRS------GFSPDFHTYNILLHVLGKGDKPLA---ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164 (300)
Q Consensus 94 ~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (300)
+++++|.+.+...... ..+.+...|..+-+..++..+.-. ...+++.+...-..--...|++|.+-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 9999998888776432 224556667777766665443322 3334444443311111256889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHCC-------
Q 043969 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE----------------------LEKAQDLFDGMITKG------- 215 (300)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------------------~~~a~~~~~~~~~~~------- 215 (300)
.+++|.++|++.... ..+..-|+.+..+|+.-.. ++-.+.-|+.+.+.+
T Consensus 263 ~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 999999999988765 3355556666666554321 222233333333221
Q ss_pred ----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 216 ----QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN------FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 216 ----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
-+.+...|..-+.. ..|+..+-...+.+..+. +.|. ...|..+...|...|+++.|..+|++..+-.
T Consensus 341 lLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 11244455554443 356778888888888764 3332 2457788888999999999999999998765
Q ss_pred --hHHHHHHHhh
Q 043969 286 --KYIHLVSKFK 295 (300)
Q Consensus 286 --~~~~l~~~~~ 295 (300)
...++.+.++
T Consensus 418 y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 418 YKTVEDLAEVWC 429 (835)
T ss_pred ccchHHHHHHHH
Confidence 3334444443
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=1.2e-06 Score=60.94 Aligned_cols=108 Identities=7% Similarity=-0.159 Sum_probs=86.5
Q ss_pred HHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043969 31 ERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSG 110 (300)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (300)
+++++.... .|+. +......+...|++++|...|+......+. +...|..+..++...|++++|...|+......
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445554443 4543 455677888899999999999998887533 78888888899999999999999999998765
Q ss_pred CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 043969 111 FSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
+.+...+..+..++...|++++|...|+...+.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 557788888888999999999999999998876
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=3.2e-05 Score=67.51 Aligned_cols=133 Identities=8% Similarity=-0.028 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
+...+..|..+..+.|.+++|+.+++...+..+. +......+...+.+.+++++|+...++..... +-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 3445555555666666666666666666554322 34445555555666666666666666655543 233444455555
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
++.+.|++++|..+|+++... .+-+..++..+...+-..|+.++|...|+...+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666666666666552 2233455555555566666666666666655544
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=4.1e-06 Score=63.31 Aligned_cols=228 Identities=14% Similarity=0.200 Sum_probs=164.1
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH-HHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL-LHVL 125 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~ 125 (300)
-+.+.+..+.+..++.+|++++..-.++..+ +....+.+..+|....++..|-..++++... .|...-|... ...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 4677777788899999999999988877533 7778888889999999999999999999776 4666666543 3456
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHhh--HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHH
Q 043969 126 GKGDKPLAALNLLNHMKEVGFDPSVLH--FTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK 203 (300)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 203 (300)
.+.+.+..|+++...|.+. ++... ...-.......+++..+..+.++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6788999999999888753 22221 1111223456788888888888776432 44445555555678999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-------------CCHH--------HHHHH
Q 043969 204 AQDLFDGMITK-GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCN-------------PNFL--------VYNTL 261 (300)
Q Consensus 204 a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l 261 (300)
|.+-|+...+- |.. ....|+..+..| +.|+++.|++...++++.|++ ||.. .-+.+
T Consensus 163 AvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999998876 555 456788766655 668999999999999887643 2211 12333
Q ss_pred HHH-------HHhcCCHHHHHHHHHHHHHcC
Q 043969 262 VSN-------LRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 262 i~~-------~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+.+ +.+.|+++.|.+.+.+|.-+.
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 333 457789999999888886544
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=3.2e-06 Score=58.88 Aligned_cols=108 Identities=11% Similarity=-0.008 Sum_probs=82.3
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 043969 66 WVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVG 145 (300)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (300)
.++++..+. .|+ .+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+......
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355555554 233 34456677788888888888888887765 5577788888888888888888888888888763
Q ss_pred CCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 146 FDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
+.+...+..+..++...|++++|...|+...+.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677788888888888888888888888775
No 114
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.69 E-value=0.00013 Score=61.16 Aligned_cols=267 Identities=11% Similarity=0.090 Sum_probs=144.3
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCc----------------------HHHHHHHH
Q 043969 11 RTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ----------------------YKLIEWVY 68 (300)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~ 68 (300)
..|++|.+.|.+.|.+++|.+++++.... .....-|..+..+|+.-.+ ++....-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 35788888888889999998888886553 2333344444444442211 22222333
Q ss_pred HHhhhCCC-----------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CHhHHHHHHHHHhcCCCh
Q 043969 69 QQMSDEGY-----------APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP------DFHTYNILLHVLGKGDKP 131 (300)
Q Consensus 69 ~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 131 (300)
+.+...+. +.+...|..-... ..|+..+...++.++.+. +.| -...|..+.+.|-..|+.
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 33333210 1122223222221 235566666666666543 122 134567777888888888
Q ss_pred HHHHHHHHHHHHcCCCCc---HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC----------CC-------ccccHHHH
Q 043969 132 LAALNLLNHMKEVGFDPS---VLHFTTLMDGLSRAGNLDACKYFFDEMANKGC----------MP-------DVVCYTVM 191 (300)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~-------~~~~~~~l 191 (300)
+.|..+|++..+..++-- ..+|.....+=.+..+++.|+++++.....-- .| +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 888888888877544322 34555555666667778888887776643211 11 22345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---
Q 043969 192 ITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF-LVYNTLVSNLRN--- 267 (300)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~--- 267 (300)
+..--..|-++....+|+++.+..+. ++.........+-.+.-++++.+++++-+..=-.|+. ..|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 55555667777777888877776543 3333333333334445555566555544433112222 344444443322
Q ss_pred cCCHHHHHHHHHHHHH
Q 043969 268 AGKLAEAHEVIRHMVE 283 (300)
Q Consensus 268 ~g~~~~a~~~~~~~~~ 283 (300)
.-.++.|..+|++.++
T Consensus 563 g~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD 578 (835)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 2346666666666665
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.00016 Score=66.58 Aligned_cols=268 Identities=10% Similarity=0.015 Sum_probs=162.7
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCC------CcCH--HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH----hhHH
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNF------RPFK--NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI----LTYN 84 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 84 (300)
...+...|+++++...+......-. .+.. .....+...+...|+++.|...+++..+.-...+. ...+
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 3344556788888888776533210 1111 12223344556789999999999887763211121 2345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HhHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCC--C-cHhh
Q 043969 85 IVMCAKYRLGKLDQFHRLLDEMGRSGF---SPD--FHTYNILLHVLGKGDKPLAALNLLNHMKEV----GFD--P-SVLH 152 (300)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~ 152 (300)
.+...+...|++++|...+++.....- .+. ..+...+...+...|+++.|...+++.... +.. + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 555667788999999988887753210 111 234455566778899999999988876542 211 1 1233
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCC--ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHH--HH-
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANK--GCMP--DVVCYTVMITSYIAAGELEKAQDLFDGMITKG--QLPNVF--TY- 223 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~--~~- 223 (300)
+..+...+...|++++|...+.+.... ...+ ....+..+.......|++++|...+....... ...... ..
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 445556677789999999988876542 1111 23344455667778999999999888875421 111111 10
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 224 -NSMIRGFCMAGKFDEACTMMKEMESRGCNPN---FLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 224 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++..+.
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122444557889999888776554211111 111345666788999999999999998764
No 116
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=0.00014 Score=59.40 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=54.6
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHH-HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKN-SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNI 85 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (300)
|++...|..-..+|...|++.+|++--.+.... .|+=. .|+....++...|++++|+..|.+-++.... +...++-
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~g 109 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTG 109 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHh
Confidence 345666777777788888888888776665554 45433 7888888888889999998888877665322 3444444
Q ss_pred HHHH
Q 043969 86 VMCA 89 (300)
Q Consensus 86 l~~~ 89 (300)
+..+
T Consensus 110 l~~a 113 (539)
T KOG0548|consen 110 LAQA 113 (539)
T ss_pred HHHh
Confidence 4443
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=7.7e-06 Score=70.03 Aligned_cols=240 Identities=15% Similarity=0.197 Sum_probs=155.9
Q ss_pred chHHHHHHH--HHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhC-C--------CC
Q 043969 9 TARTFNILI--CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDE-G--------YA 77 (300)
Q Consensus 9 ~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 77 (300)
|..|-..++ +.|...|+.+.|++-+.-++ +...|..+.+.|.+..+++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 455555565 34677899999988876653 3448999999999999988887666655431 1 12
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 043969 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157 (300)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (300)
|+ .+-..+.-.....|.+++|+.++.+..+ |..|-..|...|.+++|+++-+.-....+ ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 22 2222333445678999999999998765 34556677888999999988665433222 24555556
Q ss_pred HHHHhCCCHHHHHHHHHHHH-----------hC--------CCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043969 158 DGLSRAGNLDACKYFFDEMA-----------NK--------GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~-----------~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 218 (300)
.-+...++.+.|++.|+... +. .-..|...|......+-..|+.+.|+.+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 66666777777777776531 11 1123566777777778889999999999987654
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
|-.+++..|-.|+.++|-++.++-- |....-.|.+.|...|++.+|..+|.+..
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3445556666666666666654321 34444455566666666666666665543
No 118
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=0.00012 Score=57.05 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=79.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHH-----HHHHHHhCCCHHHHHHHHHHHHhCCCCCcccc-HHHHHH
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTT-----LMDGLSRAGNLDACKYFFDEMANKGCMPDVVC-YTVMIT 193 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~ 193 (300)
.|+--|.+.++..+|..+.+++.-. .|-...... +..-.........|...|+..-+++..-|... -.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 3344466777777777776665311 111111111 11111122234555666655544433322221 233444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHH
Q 043969 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN-TLVSNLRNAGKLA 272 (300)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~ 272 (300)
++.-..++++++..+..+..--..-|...+| +.++++..|++.+|.++|-....-.++ |..+|. .|.++|.+.+.++
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 4444455566655555554432222333333 556666666666666666555443333 333333 3445566666666
Q ss_pred HHHHHHHHHHHcChHHHH
Q 043969 273 EAHEVIRHMVEKGKYIHL 290 (300)
Q Consensus 273 ~a~~~~~~~~~~~~~~~l 290 (300)
.|+.++-++...+.-.++
T Consensus 446 lAW~~~lk~~t~~e~fsL 463 (557)
T KOG3785|consen 446 LAWDMMLKTNTPSERFSL 463 (557)
T ss_pred HHHHHHHhcCCchhHHHH
Confidence 666665555444433333
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=5.1e-06 Score=57.35 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=57.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
....+...+...|++++|...++.+...+. .+...+..+...+...|++++|...++...+.+ +.+...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 444555556666666666666666655432 255556666666666666666666666665543 344555555666666
Q ss_pred cCCChHHHHHHHHHHHHc
Q 043969 127 KGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (300)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666554
No 120
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.60 E-value=6.8e-06 Score=57.44 Aligned_cols=126 Identities=14% Similarity=0.241 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc----ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV----VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV--FTYN 224 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~ 224 (300)
..|..++..+ ..++...+...++.+.+.. |+. ...-.+...+...|++++|...|+...+....|+. ....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455555554 3677777777777776652 222 22233446667778888888888887776533322 2445
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 225 SMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 281 (300)
.+...+...|++++|+..++..... ......+......|.+.|++++|...|++.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5677777888888888887664332 223445566667788888888888887764
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=5.9e-06 Score=66.76 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=89.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (300)
..++..+...++++.|..+++++.+.. |+ ....++..+...++..+|.+++++..+... -+..........|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 455566666778888888888887763 33 455577777777788888888888776532 3566666677778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 234 GKFDEACTMMKEMESRGCNPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
++++.|+.+.+++.+. .|+ ..+|..|..+|...|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888875 444 4578888888888888888888877665
No 122
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.59 E-value=0.0001 Score=62.73 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=102.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCM 232 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (300)
|......+.+.+..++|...+.+.... .+.....|......+...|.+++|.+.|......+.. ++.....+..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 345566777888888888887777655 2345556677777788899999999999988775332 46678889999999
Q ss_pred cCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 233 AGKFDEACT--MMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 233 ~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+-|+...+-.
T Consensus 731 ~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 998888877 999999874 4478899999999999999999999999887643
No 123
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00025 Score=58.76 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=65.9
Q ss_pred HHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 043969 16 LICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGK 95 (300)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (300)
=++-+...+++++|.....+....+ +-+...+..=+-++.+.+++++|+.+.+.-... ..+...+--=.-+..+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 3566777889999999998887764 334445666666778888888888655432210 0011110011122335566
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 043969 96 LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMK 142 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (300)
.++|+..++-..+ .+..+...-...+.+.|++++|+++|+.+.
T Consensus 95 ~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 95 LDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred HHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666552211 122233344445556666666666666653
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=7.7e-06 Score=56.45 Aligned_cols=98 Identities=9% Similarity=0.030 Sum_probs=57.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 043969 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159 (300)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (300)
......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3344445555666666666666666665543 3355556666666666666666666666665543 3344555555556
Q ss_pred HHhCCCHHHHHHHHHHHHhC
Q 043969 160 LSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~ 179 (300)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665554
No 125
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.56 E-value=1.5e-06 Score=70.41 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=93.9
Q ss_pred CCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhc--CCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhh
Q 043969 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLF--NFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILT 82 (300)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (300)
+.+.++.....+++.+....+.+++.+++.+.+.. ....-..|..++++.|.+.|..+.++.+++.=.+.|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667777778888888888888888887776654 1112223567888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcC
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (300)
+|.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887766666667776666665554
No 126
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.50 E-value=6.7e-06 Score=66.79 Aligned_cols=124 Identities=11% Similarity=0.117 Sum_probs=93.3
Q ss_pred CCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc--CCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcccc
Q 043969 110 GFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV--GFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC 187 (300)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (300)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44566777778888888888888888888877665 2222234456888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (300)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666667766666665554
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.50 E-value=0.00039 Score=57.14 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=76.8
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP-NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263 (300)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (300)
..+|...++...+..-++.|..+|.+..+.+..+ ++..+++++.-+|. +|..-|.++|+--.+. +.-+..--...+.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 4567888888888888999999999999987776 77778888887765 7889999999876654 2223344456677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 043969 264 NLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
-+...++-..+..+|++.+.++
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhcc
Confidence 7788888888888888888774
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=0.00037 Score=56.54 Aligned_cols=232 Identities=15% Similarity=0.073 Sum_probs=155.4
Q ss_pred cHHHHHHHHHHhh---hcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCCHHHH
Q 043969 25 LARKVVERFIKSK---LFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEG--YAPDILTYNIVMCAKYRLGKLDQF 99 (300)
Q Consensus 25 ~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 99 (300)
+.....+.|+++. ..+-.|+.. ++..=.-..+...+...-+++...+ -.|+.......+.+......-..+
T Consensus 218 dp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~ 293 (484)
T COG4783 218 DPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQA 293 (484)
T ss_pred CchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccch
Confidence 4555566676665 233344432 1222223345556666666665432 345566666666655444433333
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
...+....+. .-...-|..-+. +...|++++|+..++.+... .+-|+.......+.+.+.++.++|.+.++.+...
T Consensus 294 ~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 294 ADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred HHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 3333332221 123344555554 44678999999999998876 4556666677788999999999999999999887
Q ss_pred CCCCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043969 180 GCMPD-VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVY 258 (300)
Q Consensus 180 ~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (300)
.|+ ....-.+..++.+.|++++|+.+++...... +-|+..|..|.++|...|+..++..-..+..
T Consensus 370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~----------- 435 (484)
T COG4783 370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY----------- 435 (484)
T ss_pred --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH-----------
Confidence 455 5566778899999999999999999988774 4488999999999999999999888776654
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 259 NTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 259 ~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
...|+++.|...+....+..
T Consensus 436 -------~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 -------ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -------HhCCCHHHHHHHHHHHHHhc
Confidence 34566666666666666544
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.49 E-value=3.9e-07 Score=46.39 Aligned_cols=33 Identities=33% Similarity=0.658 Sum_probs=14.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043969 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219 (300)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 219 (300)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.47 E-value=1.2e-05 Score=65.05 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (300)
....++..+...++++.|..+++++.+.. |+ ....++..+...++..+|.+++++..+. .+.+..........+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34455666667788888888888887763 44 4455777777778888888888888765 3446666666777788
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCc-cccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 162 RAGNLDACKYFFDEMANKGCMPD-VVCYTVMITSYIAAGELEKAQDLFDGMI 212 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (300)
+.++.+.|..+.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888876 344 4588888888888888888888888765
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.47 E-value=3.7e-07 Score=46.49 Aligned_cols=34 Identities=47% Similarity=0.917 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF 255 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (300)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998873
No 132
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00021 Score=59.16 Aligned_cols=220 Identities=13% Similarity=0.037 Sum_probs=137.2
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCC
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDK 130 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (300)
=++.+...+++++|.+...+++..++. +...+..=+-+..+.+.+++|+.+.+.-... ..+..-+..-.-+..+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 455677889999999999999987633 6667777777889999999999665543211 1111111222334567899
Q ss_pred hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHH-hcCCHHHHHHHHH
Q 043969 131 PLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYI-AAGELEKAQDLFD 209 (300)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~ 209 (300)
.++|+..++-.. +.+..+...-...+.+.|++++|.++|+.+.+.+. ..+..-+.+-+ ..+-.-.+. +.+
T Consensus 95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~a~~a~l~~~-~~q 165 (652)
T KOG2376|consen 95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLLAVAAALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHhhhHH-HHH
Confidence 999999888322 12334555667788999999999999999987743 22333222211 111111111 222
Q ss_pred HHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCCHHH
Q 043969 210 GMITKGQLP--NVFTYNSMIRGFCMAGKFDEACTMMKEMESR-------GCNPNF-------LVYNTLVSNLRNAGKLAE 273 (300)
Q Consensus 210 ~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~li~~~~~~g~~~~ 273 (300)
.....| +...+-.....+...|++.+|+++++...+. +-.-+. ..-..+.-++...|+.++
T Consensus 166 ---~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 166 ---SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred ---hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 222233 2223333455667889999999999988321 111111 112234445678899999
Q ss_pred HHHHHHHHHHcC
Q 043969 274 AHEVIRHMVEKG 285 (300)
Q Consensus 274 a~~~~~~~~~~~ 285 (300)
|.+++...++.+
T Consensus 243 a~~iy~~~i~~~ 254 (652)
T KOG2376|consen 243 ASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHhc
Confidence 999999999887
No 133
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00024 Score=62.66 Aligned_cols=210 Identities=14% Similarity=0.130 Sum_probs=129.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.|..+..+-.+.|...+|.+-|-+. .|+..|..++....+.|.+++..+++.-.++..-.|.. =+.|+-+|+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyA 1177 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHH
Confidence 5677777777777777776555332 26778888899999999999988888777766544443 457788888
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHhh--------------------------HHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043969 127 KGDKPLAALNLLNHMKEVGFDPSVLH--------------------------FTTLMDGLSRAGNLDACKYFFDEMANKG 180 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~--------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (300)
+.++..+..+++. -|+... |..|...+...|++..|.+.-+..
T Consensus 1178 kt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA---- 1246 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA---- 1246 (1666)
T ss_pred HhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 8887766554431 233333 344444444555555444333222
Q ss_pred CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043969 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNT 260 (300)
Q Consensus 181 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (300)
-+..||-.+-.+|...+.+.-|. |.-.++.....-...++.-|-..|.+++.+.+++...... +...-.|+.
T Consensus 1247 --ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTE 1318 (1666)
T KOG0985|consen 1247 --NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTE 1318 (1666)
T ss_pred --cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHH
Confidence 25667777777777666655442 3333344556677889999999999999999887655321 122334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 261 LVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 261 li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
|.-.|.+ -++++.++.++-.-.+
T Consensus 1319 LaiLYsk-ykp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1319 LAILYSK-YKPEKMMEHLKLFWSR 1341 (1666)
T ss_pred HHHHHHh-cCHHHHHHHHHHHHHh
Confidence 5555544 3455555555444433
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.43 E-value=5.7e-07 Score=45.45 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=11.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043969 223 YNSMIRGFCMAGKFDEACTMMKEMESRGC 251 (300)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (300)
|+.++.+|++.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33444444444444444444444443333
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.43 E-value=5.6e-07 Score=45.48 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043969 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 218 (300)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.00096 Score=58.11 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=147.0
Q ss_pred hccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHH--HccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043969 21 GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHAL--LGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQ 98 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (300)
...+++++|+....+..+. .|+.. |..++.++ .+.|+.++|..+++.....+.. |..|...+-..|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4567899999988887665 46553 34444443 5788999999888887766655 88899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC----------CHHH
Q 043969 99 FHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG----------NLDA 168 (300)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~ 168 (300)
|..+|+..... -|+......+..+|.+.+.+.+-.+.--++-+. ++.....+=++++.+...- -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999998876 477777788888898888876644444344332 3444444445555443321 1234
Q ss_pred HHHHHHHHHhCCCCC-ccccHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043969 169 CKYFFDEMANKGCMP-DVVCYTVMITSYIAAGELEKAQDLFD-GMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246 (300)
Q Consensus 169 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (300)
|.+.++.+.+.+.+. +..-...-...+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555666665543111 11111122233456788999999984 4444333334455556677778888898888888888
Q ss_pred HHCC
Q 043969 247 ESRG 250 (300)
Q Consensus 247 ~~~~ 250 (300)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8764
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.0011 Score=57.81 Aligned_cols=224 Identities=19% Similarity=0.188 Sum_probs=152.7
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChH
Q 043969 55 LLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCA--KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPL 132 (300)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (300)
....+++..|.+-..++.+.. |+. .|..++.+ ..+.|+.++|..+++.....+. .|..|...+-.+|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhh
Confidence 346789999999999988773 443 23344443 4688999999999998877663 48889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC----------HH
Q 043969 133 AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE----------LE 202 (300)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~ 202 (300)
+|..+|++.... -|+......+..+|.+.+++.+-.+.--++-+. .+-+...+=.+++.+.+.-. ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999886 456777777778888888776555444444332 22234444444444443221 23
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 203 KAQDLFDGMITKG-QLPNVFTYNSMIRGFCMAGKFDEACTMMK-EMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRH 280 (300)
Q Consensus 203 ~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 280 (300)
-|.+.++.+.+.+ ..-+..-.......+...|++++|+.++. ...+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4666677776654 22233333334445567889999999984 444432333444445566778889999999999999
Q ss_pred HHHcC
Q 043969 281 MVEKG 285 (300)
Q Consensus 281 ~~~~~ 285 (300)
+.+.|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 99887
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=5.9e-05 Score=52.70 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc---HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc--ccHHHHH
Q 043969 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPS---VLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV--VCYTVMI 192 (300)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 192 (300)
|..++..+. .++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+. .....+.
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 334444432 555666666666665542 222 122223345556666666666666666655322211 1233345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 193 TSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
..+...|++++|+..++...... .....+......+.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666666666666665533222 2334455566666666777766666654
No 139
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.39 E-value=9.2e-06 Score=52.12 Aligned_cols=81 Identities=23% Similarity=0.366 Sum_probs=57.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGY-APDILTYNIVMCAKYRLG--------KLDQFHRLLDEMGRSGFSPDFHT 117 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 117 (300)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666666888888888888888888 788888888887766543 23456667777777777777777
Q ss_pred HHHHHHHHhc
Q 043969 118 YNILLHVLGK 127 (300)
Q Consensus 118 ~~~l~~~~~~ 127 (300)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 140
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.32 E-value=0.0013 Score=56.48 Aligned_cols=207 Identities=11% Similarity=0.063 Sum_probs=128.3
Q ss_pred CCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHH
Q 043969 40 NFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP-DFHTY 118 (300)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 118 (300)
.+.-+...|..+--++...|+++.+.+.|++...--+. ....|..+...+...|.-..|..+++......-.| ++..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34556667888888888888888888888887654333 56677778778888888888888887765442123 33333
Q ss_pred HHHHHHH-hcCCChHHHHHHHHHHHHc--CC--CCcHhhHHHHHHHHHhC----C-------CHHHHHHHHHHHHhCCCC
Q 043969 119 NILLHVL-GKGDKPLAALNLLNHMKEV--GF--DPSVLHFTTLMDGLSRA----G-------NLDACKYFFDEMANKGCM 182 (300)
Q Consensus 119 ~~l~~~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~----~-------~~~~a~~~~~~~~~~~~~ 182 (300)
-..-..| .+.+..++++.+-.+.... +. ......|..+.-+|... . ...++.+.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~- 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP- 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-
Confidence 3333333 3446666666666555541 10 11223333333333221 1 23456666666655432
Q ss_pred CccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 183 PDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
.|....-.+.--|+..++.+.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+...+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 122233333334566778888888888888875566788888888888888888888888877664
No 141
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00021 Score=55.70 Aligned_cols=191 Identities=11% Similarity=0.077 Sum_probs=121.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcC-------CChHHHHHHHHHHHHcCCCCcH-hhHHHHH
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG-------DKPLAALNLLNHMKEVGFDPSV-LHFTTLM 157 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 157 (300)
++--|.+.+++.+|..+.+++. |.++.-|..-.-.+... ....-|.+.|+-.-+.+..-|. ....++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred heeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 3344678899999998887764 22332222111112222 2344466666655554443332 3345566
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCH
Q 043969 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTY-NSMIRGFCMAGKF 236 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~ 236 (300)
+.+.-..++++++..+..+..--. -|...--.+.++.+..|++.+|+++|-.+....++ |..+| ..+.++|.+.+++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFT-NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCc
Confidence 666667788888888888776532 23333345788899999999999999888766555 44455 5566888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 237 DEACTMMKEMESRGCNPNFLVY-NTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+.|+.++-.+.. +.+..+. ..+.+.|.+++.+--|-+.|..+...+
T Consensus 445 ~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 445 QLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 999887654432 2233333 344456888888888888888776654
No 142
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.31 E-value=7.6e-05 Score=58.48 Aligned_cols=137 Identities=13% Similarity=0.214 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhC-CCHHHHHHHHHHHHhC----CCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CC
Q 043969 152 HFTTLMDGLSRA-GNLDACKYFFDEMANK----GCMPD--VVCYTVMITSYIAAGELEKAQDLFDGMITKGQL-----PN 219 (300)
Q Consensus 152 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~ 219 (300)
.+..+...|... |+++.|.+.|++..+. + .+. ...+..+...+.+.|++++|.++|++....... ++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344555566666 7888888888776432 2 111 345567777888889999999999887764221 22
Q ss_pred HH-HHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcChHHH
Q 043969 220 VF-TYNSMIRGFCMAGKFDEACTMMKEMESR--GCNPN--FLVYNTLVSNLRN--AGKLAEAHEVIRHMVEKGKYIH 289 (300)
Q Consensus 220 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~ 289 (300)
.. .|-..+-++...||.-.|.+.+++.... ++..+ ......|+.++-. ...++.+..-|+.+.+.+.|.+
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence 22 2344455667778999999999888754 33333 3456677777743 3567888888888877776654
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.29 E-value=2.7e-05 Score=50.06 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 195 YIAAGELEKAQDLFDGMITKGQ-LPNVFTYNSMIRGFCMAG--------KFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
+...+++...-.+|+.+...|+ .|+..+|+.++.+.++.. +.-+.+.++++|...+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3334555555555555555555 455555555555544322 1233455566666656666666666666554
Q ss_pred H
Q 043969 266 R 266 (300)
Q Consensus 266 ~ 266 (300)
.
T Consensus 115 l 115 (120)
T PF08579_consen 115 L 115 (120)
T ss_pred H
Confidence 4
No 144
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.28 E-value=5.8e-05 Score=58.95 Aligned_cols=129 Identities=11% Similarity=0.141 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV-LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGL 160 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (300)
+|..++....+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666665432 2233334333333 22244555566666666554 444555566666666
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCcc---ccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 161 SRAGNLDACKYFFDEMANKGCMPDV---VCYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
.+.++.+.|+.+|+..... +.++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666544 22221 3566666666666666666666666555
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.27 E-value=3e-06 Score=53.05 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043969 198 AGELEKAQDLFDGMITKGQ-LPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHE 276 (300)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 276 (300)
.|+++.|+.+++++.+... .|+...+..+..+|.+.|++++|..+++. .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677788888887776533 12344555577788888888888888877 32211 123444455677788888888888
Q ss_pred HHHH
Q 043969 277 VIRH 280 (300)
Q Consensus 277 ~~~~ 280 (300)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 146
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.27 E-value=0.00016 Score=61.70 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=88.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (300)
.+.+......|.+|+.+++.+...+ .-..-|..+...|...|+++.|.++|-+.- .++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455667778888888888887764 334457777888888888888888876532 34566778888888
Q ss_pred HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 043969 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244 (300)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (300)
|+.|.++-.+... .......|..-..-.-..|++.+|.++|-.+.. |+ ..|..|-+.|..+..+++..
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHH
Confidence 8888887766543 233455565555556667777777766644321 22 12444555555555444443
No 147
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.00077 Score=55.32 Aligned_cols=221 Identities=13% Similarity=0.060 Sum_probs=136.2
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH-----
Q 043969 14 NILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC----- 88 (300)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----- 88 (300)
..+.+..-+..++..+++.+....... -+..-++....++...|.+.+.........+.|.. ...-|+.+..
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 345556666677778888777766654 44445666777788888888877777777666533 2333333333
Q ss_pred --HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCH
Q 043969 89 --AKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166 (300)
Q Consensus 89 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (300)
++.+.++++.+...+.+....--.|+ ...+....+++.+..+...-.+... ..-...-.+.+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 44455667777777776543321211 1122333444444444443332221 11122225567778888
Q ss_pred HHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043969 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246 (300)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (300)
..|...|.++++.. +-|...|.....+|.+.|.+..|+.-.+...+.. ++....|..=..++....++++|.+.|++.
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887775 4467778888888888888888887777776652 234555655566666667788888888877
Q ss_pred HHC
Q 043969 247 ESR 249 (300)
Q Consensus 247 ~~~ 249 (300)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 765
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.26 E-value=4e-05 Score=48.77 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043969 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNA 268 (300)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (300)
..+...+...|++++|...+++..+... .+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 3444455555666666666665554421 133445555555556666666666666555532 22234555555556666
Q ss_pred CCHHHHHHHHHHHHH
Q 043969 269 GKLAEAHEVIRHMVE 283 (300)
Q Consensus 269 g~~~~a~~~~~~~~~ 283 (300)
|+.+.|...+++..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666655543
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=7.1e-05 Score=50.23 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc----cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPD----VVCYTVMITSYIAAGELEKAQDLFDGMITKGQL--PNVFTYNSMI 227 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~ 227 (300)
..+...+.+.|++++|...|..+.... |+ ...+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 334444455555555555555554331 11 123334445555555555555555555443111 1123344444
Q ss_pred HHHhccCCHHHHHHHHHHHHHC
Q 043969 228 RGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 4555555555555555555543
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=0.00011 Score=49.36 Aligned_cols=97 Identities=12% Similarity=-0.067 Sum_probs=44.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhHHHHHHH
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYA--PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF--SPDFHTYNILLH 123 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 123 (300)
+..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|++++|...++.+....- +.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444455555555555555555443211 0122333444555555555555555555543310 011233444444
Q ss_pred HHhcCCChHHHHHHHHHHHHc
Q 043969 124 VLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (300)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.21 E-value=0.0012 Score=50.30 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=98.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH---HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTY---NILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (300)
....+.+.|++++|.+.|+.+...- +-+.... -.+..++.+.+++++|...+++..+........-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3344455667777777776665542 1122221 23445566667777777777766665222112222222222221
Q ss_pred -----------------CCC---HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043969 163 -----------------AGN---LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT 222 (300)
Q Consensus 163 -----------------~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 222 (300)
..| ..+|...|+.+++. -|++ .-.++|...+..+.+. =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHHH
Confidence 011 23444555555554 3333 2234444444443332 0111
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 223 YNSMIRGFCMAGKFDEACTMMKEMESR--GCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
-..+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++.+.+..
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 124566788889999999989888874 3344556777888899999999999887776643
No 152
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=0.00059 Score=47.30 Aligned_cols=95 Identities=6% Similarity=-0.075 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (300)
..-.+...+...|++++|..+|+.+.... +-+..-|-.|..++-..|++++|+..|.......+ -|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 34445555666777777777777766542 22444556666666777777777777777766654 25666666777777
Q ss_pred ccCCHHHHHHHHHHHHH
Q 043969 232 MAGKFDEACTMMKEMES 248 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~ 248 (300)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776665
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.17 E-value=5.8e-05 Score=48.03 Aligned_cols=88 Identities=16% Similarity=0.083 Sum_probs=35.2
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCCh
Q 043969 52 LHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKP 131 (300)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (300)
...+...|++++|...+++..+.... +...+..+...+...+++++|.+.++...... +.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 33334444444444444444433211 22333334444444444444444444443332 22223333344444444444
Q ss_pred HHHHHHHHHH
Q 043969 132 LAALNLLNHM 141 (300)
Q Consensus 132 ~~a~~~~~~~ 141 (300)
+.|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.17 E-value=3.7e-06 Score=41.32 Aligned_cols=25 Identities=36% Similarity=0.731 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMI 212 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~ 212 (300)
|+.++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 155
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.16 E-value=0.00036 Score=59.67 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=113.2
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCC
Q 043969 50 AILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129 (300)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (300)
-.+.+....++|.+|+.+++.+..+.. -..-|..+...|+..|+++.|.++|-+.- .++-.|..|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 345566677888899999888877642 34457778889999999999999886532 3456788899999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 043969 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFD 209 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (300)
+|+.|.++-.+.. |.......|.+-..-.-+.|++.+|+++|-.+. .|+ ..|..|-+.|..+..+.+..
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 9999988876653 344556667666667777888888877764433 233 34566777777777776665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 043969 210 GMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244 (300)
Q Consensus 210 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (300)
+-.-.. -..|--.+..-+-..|+...|..-|-
T Consensus 875 k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 875 KHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HhChhh---hhHHHHHHHHHHHhccChhHHHHHHH
Confidence 432211 12344445555555666666665543
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.15 E-value=0.0017 Score=49.52 Aligned_cols=180 Identities=11% Similarity=0.006 Sum_probs=106.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTY---NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
+-.....+...|++++|.+.|+++...-+.+ .... -.+..++.+.+++++|...+++..+.--.....-+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3334555677899999999999999875432 3332 34567889999999999999999876321112233333333
Q ss_pred Hhc--C---------------CCh---HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc
Q 043969 125 LGK--G---------------DKP---LAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184 (300)
Q Consensus 125 ~~~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (300)
.+. . .+. .+|+..|+.+.+. |-...-..+|...+..+... =
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----l 174 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----L 174 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----H
Confidence 221 1 122 2345555555554 22222234444433333321 0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 185 VVCYTVMITSYIAAGELEKAQDLFDGMITK--GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
...--.+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 011124556677777777777777777765 333345566677778888888888777766554
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.14 E-value=4.2e-06 Score=41.14 Aligned_cols=29 Identities=52% Similarity=1.030 Sum_probs=19.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMESRG 250 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (300)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.13 E-value=0.00033 Score=50.55 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD--VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIR 228 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 228 (300)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455566666677777777777777665422221 245666666777777777777777776664221 4455555666
Q ss_pred HHhccCCH
Q 043969 229 GFCMAGKF 236 (300)
Q Consensus 229 ~~~~~~~~ 236 (300)
++...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 66665553
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.11 E-value=0.00016 Score=56.48 Aligned_cols=129 Identities=12% Similarity=0.127 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHH
Q 043969 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG-LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSY 195 (300)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (300)
+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|..-+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56666666666666666667776666432 2233344444433 22345555567777666554 334555566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 196 IAAGELEKAQDLFDGMITKGQLPNV----FTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
...|+.+.|..+|++.... + |.. ..|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666554 2 222 36666666666666666666666666653
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.08 E-value=0.00059 Score=47.32 Aligned_cols=96 Identities=5% Similarity=-0.087 Sum_probs=59.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
....+...+...|++++|..+|+.+....+. +..-|-.|..++-..|++++|+..|....... +.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344455555667777777777666655422 45555556666666677777777776666655 345666666666666
Q ss_pred cCCChHHHHHHHHHHHHc
Q 043969 127 KGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (300)
..|+.+.|.+-|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777776666665543
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.07 E-value=0.00019 Score=51.57 Aligned_cols=79 Identities=8% Similarity=-0.113 Sum_probs=46.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAP--DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
.|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++...... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 55666666667777777777777776543222 12356666667777777777777777666542 2233444444444
Q ss_pred Hh
Q 043969 125 LG 126 (300)
Q Consensus 125 ~~ 126 (300)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=0.00058 Score=49.26 Aligned_cols=87 Identities=9% Similarity=-0.055 Sum_probs=61.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD--ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 567777778888888888888888876543332 3567777788888888888888888877653 3345556666666
Q ss_pred HhcCCChHHH
Q 043969 125 LGKGDKPLAA 134 (300)
Q Consensus 125 ~~~~~~~~~a 134 (300)
+...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 7666664433
No 163
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.06 E-value=0.0031 Score=49.23 Aligned_cols=232 Identities=16% Similarity=0.081 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH-H
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIV---MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTY-N 119 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 119 (300)
++.-..-+...+...|++..|+.-|...++- |+..|.++ ...|...|+...|+.=+....+. +||-..- .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444556778888889999999999888865 44445444 35677788888888888888776 5664322 2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCc------------HhhH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPS------------VLHF--TTLMDGLSRAGNLDACKYFFDEMANKGCMPDV 185 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (300)
.-...+.+.|.++.|..-|+.+.+...... ...+ ...+..+...|+...|+.....+.+.. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 233457889999999999999887632111 1111 223445667899999999999998863 4578
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH----H
Q 043969 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNT----L 261 (300)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l 261 (300)
..|..-..+|...|++..|+.=++...+... -+..++-.+-..+...|+.+.++..+++..+. .|+...... +
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 8888889999999999999998887766533 36777777888888999999999999998875 566543211 1
Q ss_pred ---H------HHHHhcCCHHHHHHHHHHHHHcC
Q 043969 262 ---V------SNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 262 ---i------~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
. ....+.++|.++++-.++..+..
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 1 11234455555555555555544
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.05 E-value=1e-05 Score=50.58 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=8.3
Q ss_pred HHHHHHccCcHHHHHHHHHH
Q 043969 51 ILHALLGIRQYKLIEWVYQQ 70 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~ 70 (300)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 165
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.04 E-value=0.00011 Score=53.38 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=31.9
Q ss_pred CcCHHHHHHHHHHHHcc-----CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043969 42 RPFKNSYNAILHALLGI-----RQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR 92 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (300)
..+..+|..++..+.+. |..+-....+..|.+-|+.-|..+|+.|+..+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 34555666666666533 4556666666777777777777777777766543
No 166
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.04 E-value=0.0036 Score=51.76 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHhcCCChHHHHHHHH
Q 043969 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP-DFHTYNILLHVLGKGDKPLAALNLLN 139 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (300)
.+.....+++++..-..--..+|..+|+...+..-++.|..+|.++.+.+..+ ++.+..+++..++ .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444455554443212123355556666666666667777777776665444 4555566666554 356666777776
Q ss_pred HHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 140 HMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD--VVCYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
--.+. +..++.--...++.+...++-..+..+|+.....++.|+ ...|..++..-..-|+...+.++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 54443 222333344556666666666777777777666644443 34666677666666777666666665543
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.03 E-value=0.00032 Score=56.85 Aligned_cols=90 Identities=8% Similarity=-0.088 Sum_probs=62.2
Q ss_pred HHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043969 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLD 97 (300)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (300)
..+...|++++|++.+.+....+ +-+...|..+..++...|++++|+..++++++.... +...|..+..++...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 44455677777777777776653 334456677777777777777777777777766432 5666777777777777777
Q ss_pred HHHHHHHHHHhC
Q 043969 98 QFHRLLDEMGRS 109 (300)
Q Consensus 98 ~a~~~~~~~~~~ 109 (300)
+|...|+...+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 777777777665
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.0016 Score=56.56 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=17.9
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 184 DVVCYTVMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (300)
|....-.+.+.|-..|++.+|..+|.+.
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4445556666677777777777776654
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.00 E-value=0.00095 Score=58.93 Aligned_cols=183 Identities=7% Similarity=-0.010 Sum_probs=124.7
Q ss_pred cHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043969 25 LARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLD 104 (300)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (300)
+...++..|-+..+.++ .-...|..|...|+...+...|.+.|+...+.... +..........|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 46667777766655431 12337888888888888888888899888876533 67778888888999999998888743
Q ss_pred HHHhCC-CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043969 105 EMGRSG-FSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP 183 (300)
Q Consensus 105 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (300)
...+.. ...-...|....-.|.+.++..+++.-|+...... |.|...|..+.++|..+|.+..|.++|...... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 332221 00011122233345667788888888888877653 457788889999999999999999999887664 34
Q ss_pred ccccHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 043969 184 DVVCYTVM--ITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 184 ~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~ 213 (300)
+. .|... ....+..|.+.+|...+.....
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32 33322 2234668888888888877654
No 170
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.98 E-value=0.00015 Score=52.65 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=27.0
Q ss_pred CHhHHHHHHHHHhc-----CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 043969 114 DFHTYNILLHVLGK-----GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162 (300)
Q Consensus 114 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (300)
+-.+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 44444444444432 35555555566666666666666666666665543
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00042 Score=56.21 Aligned_cols=93 Identities=13% Similarity=-0.028 Sum_probs=80.9
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCC
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDK 130 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (300)
-...+...|+++.|++.|+++++.... +...|..+..++...|++++|+..++.+.... +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999988644 77888888999999999999999999998875 4567788899999999999
Q ss_pred hHHHHHHHHHHHHcC
Q 043969 131 PLAALNLLNHMKEVG 145 (300)
Q Consensus 131 ~~~a~~~~~~~~~~~ 145 (300)
+++|...|++..+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998863
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.93 E-value=0.00039 Score=49.94 Aligned_cols=93 Identities=12% Similarity=-0.017 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP--DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIR 228 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 228 (300)
..+..+...+...|++++|...|+........+ ...++..+...+...|++++|+..+++..+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 334444555555566666666665554432111 12245555555666666666666666555431 112333444444
Q ss_pred HHh-------ccCCHHHHHHHHH
Q 043969 229 GFC-------MAGKFDEACTMMK 244 (300)
Q Consensus 229 ~~~-------~~~~~~~a~~~~~ 244 (300)
.+. ..|+++.|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 444 4555554443333
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.0037 Score=49.07 Aligned_cols=196 Identities=14% Similarity=0.180 Sum_probs=117.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCC--H
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDE----GYAP-DILTYNIVMCAKYRLGKLDQFHRLLDEMG----RSGFSPD--F 115 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~--~ 115 (300)
.|......|...+++++|.+.|.+..+. +-+. -...|......+ +..++++|.+.+++.. ..| .|+ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 4555566677778888877777766432 1111 122344444444 4448888888877763 334 233 3
Q ss_pred hHHHHHHHHHhcC-CChHHHHHHHHHHHHc----CCCCc--HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-----C
Q 043969 116 HTYNILLHVLGKG-DKPLAALNLLNHMKEV----GFDPS--VLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM-----P 183 (300)
Q Consensus 116 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 183 (300)
..+..+...|... |+++.|++.|++..+. + .+. ...+..+...+.+.|++++|..+|+++...... .
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 3567777888888 9999999999987653 2 111 345677888899999999999999998765322 1
Q ss_pred ccc-cHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCC---HHHHHHHHHHH
Q 043969 184 DVV-CYTVMITSYIAAGELEKAQDLFDGMITK--GQLPN--VFTYNSMIRGFCMAGK---FDEACTMMKEM 246 (300)
Q Consensus 184 ~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~---~~~a~~~~~~~ 246 (300)
+.. .|-..+-++...|++-.|...+++.... ++..+ ......|+.+|-. || +.++..-|+.+
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-GDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T-CCCHHHHCHHHTTS
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-CCHHHHHHHHHHHccc
Confidence 221 2334445667789999999999998765 22222 3455667777643 44 44444444433
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.88 E-value=0.002 Score=43.01 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCc--HhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPS--VLHFTTLMDGLSRAGNLDACKYFFDEMAN 178 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (300)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555444443322 12233344444445555555555544443
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.86 E-value=0.0029 Score=42.23 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=50.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhc
Q 043969 157 MDGLSRAGNLDACKYFFDEMANKGCMPD--VVCYTVMITSYIAAGELEKAQDLFDGMITKGQL--PNVFTYNSMIRGFCM 232 (300)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~ 232 (300)
..++-..|+.++|..+|+.....|.... ...+-.+..++...|++++|..++++....... -+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455666677777777776666654433 234445556666667777777777666554211 011222223345556
Q ss_pred cCCHHHHHHHHHHHH
Q 043969 233 AGKFDEACTMMKEME 247 (300)
Q Consensus 233 ~~~~~~a~~~~~~~~ 247 (300)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666665444
No 176
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.84 E-value=0.0033 Score=55.79 Aligned_cols=181 Identities=11% Similarity=0.029 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHH
Q 043969 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNH 140 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (300)
...++..|-+..+..+. =...|..|...|....+...|.+.|+...+.. ..+........+.|.+..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44555555544444222 23466677777777677778888888877664 44666777788888888888888877333
Q ss_pred HHHcCCCCcH--hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043969 141 MKEVGFDPSV--LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 141 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 218 (300)
.-+.. +.-. ..|....-.|.+.++..++..-|+...... +.|...|..+..+|...|++..|.++|.+.... +|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 22211 1111 112223334667777888888887776653 336677888888888888888888888877664 33
Q ss_pred CHHHHHHHH--HHHhccCCHHHHHHHHHHHHH
Q 043969 219 NVFTYNSMI--RGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 219 ~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+. +|...- -.-+..|.+.+|...+.....
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32 222222 223456788888877776654
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=0.00012 Score=43.67 Aligned_cols=52 Identities=15% Similarity=0.317 Sum_probs=30.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
+.|++++|+++|+++.+.... +...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666554322 5555556666666666666666666666554
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.80 E-value=0.00013 Score=43.49 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=24.2
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
.|++++|+++|+++.+..+. +...+..+..++.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555555555555444322 4444444555555555555555555554444
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.80 E-value=0.0008 Score=53.65 Aligned_cols=274 Identities=12% Similarity=0.029 Sum_probs=167.4
Q ss_pred hHHHHHHH--HHhhccccHHHHHHHHHHhhhcCCCcCH----HHHHHHHHHHHccCcHHHHHHHHHHhh--hC--CCC-C
Q 043969 10 ARTFNILI--CTCGEVGLARKVVERFIKSKLFNFRPFK----NSYNAILHALLGIRQYKLIEWVYQQMS--DE--GYA-P 78 (300)
Q Consensus 10 ~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~~~-~ 78 (300)
..+|..-+ .-+++.|+.+.-.+.|+...+.| .-|. .+|..|.++|.-.+++++|+++...=+ .+ |-+ -
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 33444444 34689999999999999988877 2332 268888888888899999988764211 11 100 0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCC-CCHhHHHHHHHHHhcCCC--------------------hHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDE----MGRSGFS-PDFHTYNILLHVLGKGDK--------------------PLA 133 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~ 133 (300)
.......+...+.-.|.+++|+-.-.+ ..+.|-. .....+-.+.+.|...|+ ++.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 122223344445556677776554322 1222211 122344455555554432 233
Q ss_pred HHHHHHHHHH----cCCC-CcHhhHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCC-CccccHHHHHHHHHhcCCHHH
Q 043969 134 ALNLLNHMKE----VGFD-PSVLHFTTLMDGLSRAGNLDACKYFFDEMA----NKGCM-PDVVCYTVMITSYIAAGELEK 203 (300)
Q Consensus 134 a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~ 203 (300)
|.++|.+=.+ .|-. ..-..|..|.+.|.-.|+++.|....+.-. +.|-+ .....+..+..++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 4444443221 1111 112346667777777889999987765432 22221 134567788888999999999
Q ss_pred HHHHHHHHHH----CCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHH
Q 043969 204 AQDLFDGMIT----KGQL-PNVFTYNSMIRGFCMAGKFDEACTMMKEMES----R-GCNPNFLVYNTLVSNLRNAGKLAE 273 (300)
Q Consensus 204 a~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~ 273 (300)
|.+.|+.-.. .|-+ ....+...|...|.-..++++|+..+.+-.. . ...-....+.+|..+|...|..++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 9998887543 2221 2345566788888888889999988776442 1 122356789999999999999999
Q ss_pred HHHHHHHHHHc
Q 043969 274 AHEVIRHMVEK 284 (300)
Q Consensus 274 a~~~~~~~~~~ 284 (300)
|+.+.+.-++.
T Consensus 334 Al~fae~hl~~ 344 (639)
T KOG1130|consen 334 ALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHH
Confidence 99888776654
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.0044 Score=52.78 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=82.0
Q ss_pred CCCCCHhhHHHHHHHHHhc--C---CHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHhcC--------CChHHHHHHHHH
Q 043969 75 GYAPDILTYNIVMCAKYRL--G---KLDQFHRLLDEMGRSGFSPD-FHTYNILLHVLGKG--------DKPLAALNLLNH 140 (300)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 140 (300)
..+.+...|...+.+.... + +.+.|..+|++..+.. |+ ...+..+..++... .+...+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3445667777776654332 2 2556777777776653 44 33333333222111 112334444444
Q ss_pred HHHc-CCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 141 MKEV-GFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 141 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
.... ..+.+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3332 123345666666666666788888888888888764 57777888888888888888888888887765
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.0059 Score=52.00 Aligned_cols=143 Identities=11% Similarity=0.062 Sum_probs=99.0
Q ss_pred CCCCCHhHHHHHHHHHhc--C---CChHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHhC--------CCHHHHHHHHHH
Q 043969 110 GFSPDFHTYNILLHVLGK--G---DKPLAALNLLNHMKEVGFDPS-VLHFTTLMDGLSRA--------GNLDACKYFFDE 175 (300)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 175 (300)
+.+.+...|...+.+... . ++...|..+|++..+. .|+ ...+..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346788889888887433 2 2367899999999986 444 34444433333221 123444555544
Q ss_pred HHhC-CCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043969 176 MANK-GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN 254 (300)
Q Consensus 176 ~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (300)
.... ....+...|..+.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++.... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 3332 123345677777666777899999999999999864 68889999999999999999999999998875 455
Q ss_pred HHHH
Q 043969 255 FLVY 258 (300)
Q Consensus 255 ~~~~ 258 (300)
..+|
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 4443
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.75 E-value=0.0087 Score=44.46 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=31.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043969 226 MIRGFCMAGKFDEACTMMKEMESR--GCNPNFLVYNTLVSNLRNAGKLAEAH 275 (300)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~ 275 (300)
+..-|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 566788888888888888888775 11112245566777788888777443
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.70 E-value=0.016 Score=46.08 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (300)
+.+.-+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++-.. . - ++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k-K--sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K-K--SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C-C--CCCChHHHHHHHH
Confidence 34455666677788888777766653 46888888888899988988887776442 1 1 3466888888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+.--+..
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 888888888887661 1 1344566677777777766544433
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0013 Score=50.25 Aligned_cols=99 Identities=9% Similarity=-0.033 Sum_probs=55.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHH
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDAC 169 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (300)
+.+.+++.+|+..|.+..... +.|.+-|..-..+|.+.|.++.|++-.+...... +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 345566666666666666553 3344445555666666666666666655555532 22334566666666666666666
Q ss_pred HHHHHHHHhCCCCCccccHHHHH
Q 043969 170 KYFFDEMANKGCMPDVVCYTVMI 192 (300)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li 192 (300)
.+.|+...+. .|+-.+|-.=+
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHH
Confidence 6666665553 45554544333
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.70 E-value=0.00032 Score=41.32 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043969 53 HALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGR 108 (300)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (300)
..+.+.|++++|...|+++++..+. +...+..+..++...|++++|...|+.+.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555554322 444555555555555555555555555543
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.0095 Score=44.87 Aligned_cols=132 Identities=10% Similarity=-0.013 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHH-----H
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTT-----L 156 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 156 (300)
..+.++..+...+.+.-....+.+..+..-+.++.....|.+.-.+.||.+.|...|++..+..-..+..+++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34445555555555555555566655554344555556666666666666666666665544322222222222 2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 157 MDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
...|.-.+++..|...+.+..... .-+....|.-.-+..-.|+...|.+.+..|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233444556666666665555442 123333344333444456666666666666654
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.0004 Score=40.87 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 193 TSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
..+.+.|++++|...|+++.+.... +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555554311 444555555555555555555555555544
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.0005 Score=41.02 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 043969 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAG-KLAEAHEVIRHMVE 283 (300)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 283 (300)
+..+|..+...+...|++++|+..|++..+.. +.+...+..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666666666666666642 224455566666666666 56666666666554
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.0014 Score=50.09 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=60.8
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHH
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKA 204 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (300)
..+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|.+=-+..+... +-...+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 455677777777777777652 3455556666667777777777766666665542 11345677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q 043969 205 QDLFDGMITKGQLPNVFTYN 224 (300)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~ 224 (300)
++.|++.++ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 777776665 345555443
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.66 E-value=0.0024 Score=49.19 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc----ccHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV----VCYTVMITSYIAAGELEKAQDLFDGMITKG--QLPNVFTYNSM 226 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l 226 (300)
|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.- .......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445555555555555544 2222 244445555555555555555555554431 11122333334
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 043969 227 IRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
...+...|+.++|..+++.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444455555555555555554
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.63 E-value=0.0042 Score=47.93 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 043969 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLP--NVFTYNSMIRGFCMAGKFDEACTMMKEMESRG--CNPNFLVYNTL 261 (300)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 261 (300)
..|...+..+.+.|++++|...|+.+.+..... ....+..+..+|...|++++|...|+.+.+.- -+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 345555555566788888888888888753221 13466677888888888888888888887641 11123445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 262 VSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 262 i~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
...+...|+.++|.++|+++++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 667778888888888888888754
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.0075 Score=42.12 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=48.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 043969 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES-----RGCNPNFLVYN 259 (300)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 259 (300)
....++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.+.|+.+.. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556666777888888888888887763 33777888888888888888888888887753 47888776543
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.57 E-value=0.00049 Score=41.07 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=32.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG-KLDQFHRLLDEMGR 108 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 108 (300)
+|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++..+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4555555555555555555555555554322 4445555555555555 45555555555443
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.014 Score=41.68 Aligned_cols=128 Identities=17% Similarity=0.199 Sum_probs=83.8
Q ss_pred CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 043969 147 DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKG---QLPNVFTY 223 (300)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 223 (300)
.|+......|..+....|+..+|...|++....-...|....-.+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 566666667777788888888888888777655445566666677777777788888888887776642 2233 33
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043969 224 NSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVI 278 (300)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 278 (300)
..+.+.+...|++.+|..-|+..... -|+...-......+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 45566777778888888888777764 444444333444456666555544333
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.012 Score=45.34 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=82.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcC---CChHHHHHHHHHHHHcCCCCcHhhHH
Q 043969 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG---DKPLAALNLLNHMKEVGFDPSVLHFT 154 (300)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (300)
-|...|-.|...|...|+.+.|..-|.+..+.. ++++..+..+..++... ....++..+|+++.... +.+..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 378888888899999999999998888887764 45666666666654433 23456888888888763 34566667
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHH
Q 043969 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS 194 (300)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (300)
.|...+...|++.+|...|+.|.+. -|....+..+|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 7777888889999999999988886 3444556666554
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.02 Score=44.10 Aligned_cols=102 Identities=8% Similarity=0.062 Sum_probs=83.1
Q ss_pred CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC---CCHHHHHHHHHHHHhCCCCCccccH
Q 043969 112 SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA---GNLDACKYFFDEMANKGCMPDVVCY 188 (300)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (300)
+-|...|-.|...|...|+.+.|..-|....+.. +++...+..+..++... ....++..+|+++.... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 6789999999999999999999999999998863 45666666666665433 34578999999998873 3466677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043969 189 TVMITSYIAAGELEKAQDLFDGMITKG 215 (300)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~~ 215 (300)
..+...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 778888999999999999999999873
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.47 E-value=0.017 Score=40.48 Aligned_cols=88 Identities=14% Similarity=0.028 Sum_probs=51.5
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 043969 159 GLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE 238 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (300)
-+...|++++|..+|.-+...+. -+..-|..|..++-..+++++|+..|......+.. |+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 34456777777777766655431 23444555555666666777777766665444321 33334445666666677777
Q ss_pred HHHHHHHHHH
Q 043969 239 ACTMMKEMES 248 (300)
Q Consensus 239 a~~~~~~~~~ 248 (300)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7776666665
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.45 E-value=0.026 Score=41.96 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=23.9
Q ss_pred hhccccHHHHHHHHHHhhhcCCC-cC-HHHHHHHHHHHHccCcHHHHHHHHHHhhhC
Q 043969 20 CGEVGLARKVVERFIKSKLFNFR-PF-KNSYNAILHALLGIRQYKLIEWVYQQMSDE 74 (300)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (300)
+.+.|++.+|.+.|+.+...... |- ....-.++.++.+.|+++.|...++++++.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555554433110 11 113334445555555555555555555544
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.45 E-value=0.02 Score=40.81 Aligned_cols=133 Identities=15% Similarity=0.063 Sum_probs=80.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-CcHhhHHH
Q 043969 77 APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFD-PSVLHFTT 155 (300)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 155 (300)
.|+...--.+..+..+.|+..+|...|++...--..-|....-.+.++....+++..|...++++.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555556666777777777777777777665444456666666667777777777777777777664210 11223345
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 156 LMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (300)
+.+.+...|.+..|+.-|+..... -|+...-..-...+.+.|+.+++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 566677777777777777777665 344433333333445566555554444333
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.033 Score=42.14 Aligned_cols=141 Identities=11% Similarity=0.148 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHH----
Q 043969 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMI---- 192 (300)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li---- 192 (300)
+-..++......+.+.-....+.+..+...+.++.....+.+.-.+.||.+.|...|+...+..-..+..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445566666778888888899999887667778888888888899999999999999887654455555555544
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043969 193 -TSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNT 260 (300)
Q Consensus 193 -~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (300)
..|.-.+++.+|...+.++...+.+ |+...|.-.-+....|+...|.+.++.|.+. .|...+.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 3455577888888888888776443 5566666555666678999999999999875 455444443
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.38 E-value=0.00088 Score=41.09 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 221 FTYNSMIRGFCMAGKFDEACTMMKEMESR----GC-NPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
.+++.+...|...|++++|+..+++..+. |- .|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566666666666666666666665532 11 111 34555666666677777777777666543
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.052 Score=46.82 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=21.4
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHHhhh
Q 043969 42 RPFKNSYNAILHALLGIRQYKLIEWVYQQMSD 73 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (300)
.|....|..+.......-.++.|+..|-+...
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 46666777777777777777777776655543
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.35 E-value=0.0057 Score=41.24 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 043969 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES-RGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 215 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 265 (300)
...|+..+..+++.+|+..+++..|.++++...+ .+++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4568888888888888888899999988888876 46777788888888744
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.34 E-value=0.04 Score=47.07 Aligned_cols=38 Identities=5% Similarity=0.049 Sum_probs=17.4
Q ss_pred HHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHH
Q 043969 29 VVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQ 69 (300)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 69 (300)
.+..++++++.|..|+.. .+...++-.|++.+|-++|.
T Consensus 619 li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHH
Confidence 333444445555445442 22333444455555555553
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.33 E-value=0.0023 Score=44.70 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHH-----HcCCCCcHhh
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMK-----EVGFDPSVLH 152 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 152 (300)
...++..+...|++++|.++.+.+.... |.+...|..++.++...|+...|.+.|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555556666666666666666554 4455666666666666666666666666553 2356665544
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.32 E-value=0.0064 Score=41.00 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=19.5
Q ss_pred CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc-CCCCcHhhHHHHHH
Q 043969 113 PDFHTYNILLHVLGKGDKPLAALNLLNHMKEV-GFDPSVLHFTTLMD 158 (300)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 158 (300)
|+..+..+++.+|+..+++..|+++++...+. +++.+..+|..|++
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44444444444444444444444444444332 23333344444443
No 207
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.029 Score=45.11 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=100.8
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH--HHHhCCCHHHHHHHHHHHHhCCCCCccccH-------------
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD--GLSRAGNLDACKYFFDEMANKGCMPDVVCY------------- 188 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------- 188 (300)
++.-.|+.++|.+.--...+.. ....+..+++ ++.-.++.+.+...|++.... .|+...-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHH
Confidence 3445666666666655555432 1122333333 334466778888888877665 3432221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH---H
Q 043969 189 TVMITSYIAAGELEKAQDLFDGMITK---GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTL---V 262 (300)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i 262 (300)
..-.+-..+.|++..|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.-.++..+. |..-...+ .
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence 11233356688999999999998764 45577788888888899999999999988887764 43333333 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 043969 263 SNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.++...++|++|.+-+++..+..
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677789999999999988765
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.0038 Score=37.60 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
.|.+.+++++|.++++.+...+.. +...+.....++...|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555555555555554222 444444555555555555555555555554
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.24 E-value=0.0035 Score=37.73 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=27.0
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
.+.+.++++.|.++++.+....+. +...+.....++.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344455555555555555544322 4444444445555555555555555555443
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.085 Score=42.60 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=98.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH--HHhcCCChHHHHHHHHHHHHcCCCCcHhhHHH-----------
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH--VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTT----------- 155 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 155 (300)
++.-.++.++|.+.--...+.. ....+...++ ++.-.++.+.+...|++.... .|+...-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHH
Confidence 3444566666666655555442 2223333443 344567788888888887765 344432211
Q ss_pred --HHHHHHhCCCHHHHHHHHHHHHhC---CCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 156 --LMDGLSRAGNLDACKYFFDEMANK---GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGF 230 (300)
Q Consensus 156 --l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (300)
=.+-..+.|.+..|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--++..+.... =...+..-..++
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~ 331 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCH 331 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHH
Confidence 122346788899999999888764 34556667777777888899999999888877764211 123344445566
Q ss_pred hccCCHHHHHHHHHHHHHC
Q 043969 231 CMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~ 249 (300)
...++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6778888888888887765
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.045 Score=47.17 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=39.8
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 043969 184 DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNT-LV 262 (300)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li 262 (300)
+....-.+..++.+.|.-++|.+.+-+... | ...+..|...++|.+|.++.++.. -|...+.-+ -.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~a 917 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQA 917 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHH
Confidence 334444555555555555555554433211 1 123455556666666666554433 122222211 11
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 043969 263 SNLRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~ 281 (300)
.-+...++.-+|.+..++.
T Consensus 918 aqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 918 AQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHhhcchHHHHHHhhhc
Confidence 1234556666666666554
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.0013 Score=40.26 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=34.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 187 CYTVMITSYIAAGELEKAQDLFDGMITK----GQL-PN-VFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
+++.+...|...|++++|++.|++..+. |.. |+ ..++..+..++...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666655432 111 11 3456666666667777777776666554
No 213
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.13 E-value=0.034 Score=38.48 Aligned_cols=126 Identities=11% Similarity=0.076 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHh
Q 043969 118 YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA 197 (300)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 197 (300)
...++..+...+.+.....+++.+...+ +.+....+.++..|++.+ .++....+.. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3456666666677777777777777665 356666777777777653 2333333332 1233444556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043969 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA-GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLR 266 (300)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (300)
.+.++++.-++.++.. +...+..+... ++++.|.+.+.+ ..+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 7777777776665422 22233333333 666666666553 114455666655544
No 214
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.13 E-value=0.13 Score=43.71 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=108.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcC-CCCcH-----hhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCccccHH
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEVG-FDPSV-----LHFTTLMDGLSR----AGNLDACKYFFDEMANKGCMPDVVCYT 189 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (300)
.+++...-.||-+.+++.+.+..+.+ +.... -.|...+..++. ..+.+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 33445556788999999888876542 22111 223344433333 45788999999999887 67777765
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 043969 190 VMI-TSYIAAGELEKAQDLFDGMITKG---QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSN- 264 (300)
Q Consensus 190 ~li-~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 264 (300)
..- +.+...|++++|++.|++..... .+.....+-.+...+.-..+|++|...|..+.+.. ..+..+|..+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 543 55677999999999999765421 11233445566777888899999999999999852 3345555555444
Q ss_pred HHhcCCH-------HHHHHHHHHHHHc
Q 043969 265 LRNAGKL-------AEAHEVIRHMVEK 284 (300)
Q Consensus 265 ~~~~g~~-------~~a~~~~~~~~~~ 284 (300)
+...|+. ++|.++|.+....
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4566777 8888888877653
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.14 Score=41.53 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=79.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcC---CCCcHhhHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCccccHHHHHH
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEVG---FDPSVLHFTTLMDGLSR---AGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (300)
.++-.|....+++..+++.+.+.... +..+...-....-++.+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666666777777766666541 11122222233344445 6667777777666544444556666666655
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccC-CHHHHHHHH---HH-HHHCCCC---C
Q 043969 194 SYIA---------AGELEKAQDLFDGMITKGQLPNVFT---YNSMIRGFCMAG-KFDEACTMM---KE-MESRGCN---P 253 (300)
Q Consensus 194 ~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~-~~~~a~~~~---~~-~~~~~~~---~ 253 (300)
.|-. ....++|+..|.+.-+.. |+..+ +..|+....... .-.+..++- .. ..+.|.. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5432 113556666666555432 33322 122222211100 111222222 11 1122322 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+--.+.+++.++.-.|+.+.|.+..++|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33345566666777777777777777777654
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.95 E-value=0.15 Score=41.26 Aligned_cols=167 Identities=13% Similarity=0.125 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhHHHHHHHHHhc---CCChHHHHHHHHHHHHcCCCCcHhhHH
Q 043969 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSG---FSPDFHTYNILLHVLGK---GDKPLAALNLLNHMKEVGFDPSVLHFT 154 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (300)
.+...++-+|....+++...++.+.+.... +.-+..+-....-++.+ .|+.++|++++..+......+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455557888999999999999997651 11123333344445666 899999999999966666677888888
Q ss_pred HHHHHHHh---------CCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC----HHHHHHHH---HH-HHHCCC-
Q 043969 155 TLMDGLSR---------AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE----LEKAQDLF---DG-MITKGQ- 216 (300)
Q Consensus 155 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~a~~~~---~~-~~~~~~- 216 (300)
.+...|-. ....++|...|.+.-+. .|+..+=-.++..+...|. -.+..++- .. +.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77776632 22467888888777654 2444332222323333332 22223332 11 122332
Q ss_pred --CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 217 --LPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 217 --~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
..+.-.+..++.++.-.|++++|.+..++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 245566788899999999999999999999986
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.94 E-value=0.075 Score=45.49 Aligned_cols=258 Identities=12% Similarity=0.107 Sum_probs=143.6
Q ss_pred CCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCC-----------cCHHHHHHHHHHHHccCcH--HHHHHHHHHhh
Q 043969 6 FPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFR-----------PFKNSYNAILHALLGIRQY--KLIEWVYQQMS 72 (300)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~ 72 (300)
+.|....+.+-+..|...|.+++|..+--- |+. .+.-.++..=.+|.+.++. -+...-+++++
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iacl----gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k 627 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACL----GVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERK 627 (1081)
T ss_pred eecccccccccchhhhhccchhhhhccccc----ceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555556666777777776653211 111 1111334444455544442 33344456677
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH-----HHHHHhcCCChHHHHHHHHHHHHcCCC
Q 043969 73 DEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI-----LLHVLGKGDKPLAALNLLNHMKEVGFD 147 (300)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (300)
++|-.|+... +...++-.|++.+|.++|.+--..+ .-.+.|+- ...-+...|..++-..+.++-.+- .
T Consensus 628 ~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--A 700 (1081)
T KOG1538|consen 628 KRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--A 700 (1081)
T ss_pred hcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--h
Confidence 7787777643 3355666788888888886542221 11122221 122344455555444443332111 0
Q ss_pred CcHhhHHHHHHHHHhCCCHHHHHHHHHH------HHhCCC---CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043969 148 PSVLHFTTLMDGLSRAGNLDACKYFFDE------MANKGC---MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 218 (300)
-+..--.+...++...|+.++|..+.-+ +.+-+. ..+..+...+...+.+...+.-|-++|.+|-+.
T Consensus 701 r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---- 776 (1081)
T KOG1538|consen 701 RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---- 776 (1081)
T ss_pred hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence 0111112344556667777777665322 111111 123445555555566677788888888877542
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF-----------LVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
..+++.....++|++|..+.++..+. .||. .-|...-++|.+.|+-.+|.++++++....
T Consensus 777 -----ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 777 -----KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred -----HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 35677888999999999998876653 3332 124455578899999999999999887654
No 218
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.03 Score=42.60 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=36.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 043969 197 AAGELEKAQDLFDGMITKGQL--PNVFTYNSMIRGFCMAGKFDEACTMMKEMESR-GCNPN-FLVYNTLVSNLRNAGKLA 272 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~ 272 (300)
+.|++..|..-|...++.... -....+-.|..++...|++++|..+|..+.+. +-.|. +.++--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555544444443111 11222333444455555555555555444432 11111 133334444444555555
Q ss_pred HHHHHHHHHHH
Q 043969 273 EAHEVIRHMVE 283 (300)
Q Consensus 273 ~a~~~~~~~~~ 283 (300)
+|...|+++++
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.87 E-value=0.076 Score=37.34 Aligned_cols=88 Identities=7% Similarity=-0.118 Sum_probs=52.5
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHH
Q 043969 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLA 133 (300)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (300)
.+...|++++|..+|+-+...++- +..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 344567777777777666654422 44455555555556666777777666654443 2344445555666666667777
Q ss_pred HHHHHHHHHH
Q 043969 134 ALNLLNHMKE 143 (300)
Q Consensus 134 a~~~~~~~~~ 143 (300)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7666666655
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.84 E-value=0.23 Score=42.16 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHH-HHHHhcCCChHHHHHHHHHHHHcC---CCCcHhhHHHHHHHHHhCCCHHHHH
Q 043969 95 KLDQFHRLLDEMGRSGFSPDFHTYNIL-LHVLGKGDKPLAALNLLNHMKEVG---FDPSVLHFTTLMDGLSRAGNLDACK 170 (300)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (300)
+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|++..... .+.....+--+.-.+.-..+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 445555555555544 2443333222 233444555555555555433210 0111222333344455555555555
Q ss_pred HHHHHHHhCCCCCccccHHHHHHH-HHhcCCH-------HHHHHHHHHHH
Q 043969 171 YFFDEMANKGCMPDVVCYTVMITS-YIAAGEL-------EKAQDLFDGMI 212 (300)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~-------~~a~~~~~~~~ 212 (300)
..|..+.+.. ..+..+|.-+..+ +...|+. ++|.++|.+..
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 5555555432 1233333333322 2334444 55555555543
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.19 Score=40.11 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHH
Q 043969 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYI 196 (300)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (300)
+.+.-+.-+...|+...|.++-.+.. .|+...|-.-+.+++..++|++...+... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445666677888888888866663 46888899999999999999987776432 225688999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043969 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (300)
+.|+..+|..+..++ |+ ..-+..|.+.|++.+|.+...+.
T Consensus 249 ~~~~~~eA~~yI~k~------~~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------PD----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC------Ch----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999988872 12 45677888999999998775543
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.75 E-value=0.011 Score=47.46 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=137.8
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhh----HHHHHHHHHhcCCHHHHHHHHHH--HHh--CCCC-CCHhHHHHHHH
Q 043969 53 HALLGIRQYKLIEWVYQQMSDEGYAPDILT----YNIVMCAKYRLGKLDQFHRLLDE--MGR--SGFS-PDFHTYNILLH 123 (300)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~--~~~--~~~~-~~~~~~~~l~~ 123 (300)
.-+++.|+......+|+..++-|-. |..+ |..+..+|.-.+++++|+++... ... .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578999999999999999998844 5444 55566778888899999887532 111 1100 11223334445
Q ss_pred HHhcCCChHHHHHHHHHH----HHcCC-CCcHhhHHHHHHHHHhCCC--------------------HHHHHHHHHHHH-
Q 043969 124 VLGKGDKPLAALNLLNHM----KEVGF-DPSVLHFTTLMDGLSRAGN--------------------LDACKYFFDEMA- 177 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~- 177 (300)
.+--.|.+++|+-.-.+- .+.|- ......+-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 555567777765443222 12221 1122344455666655442 344455554322
Q ss_pred ---hCCC-CCccccHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 178 ---NKGC-MPDVVCYTVMITSYIAAGELEKAQDLFDGMIT----KGQL-PNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 178 ---~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+.|- -.-...|..|-..|.-.|+++.|+..-+.-.. -|-+ .....+..+..++.-.|+++.|.+.++....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111 11234566777777778899999877654322 2221 2345678888999999999999998876543
Q ss_pred ----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 249 ----RGC-NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 249 ----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
.|- .....+..+|.+.|.-..+++.|+.++++-+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 221 2334556678888888888899988887644
No 223
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.72 E-value=0.2 Score=39.31 Aligned_cols=224 Identities=14% Similarity=0.094 Sum_probs=119.0
Q ss_pred HccCcHHHHHHHHHHhhhCC--CCCCH------hhHHHHHHHHHhcC-CHHHHHHHHHHHHhC--------CCCCC----
Q 043969 56 LGIRQYKLIEWVYQQMSDEG--YAPDI------LTYNIVMCAKYRLG-KLDQFHRLLDEMGRS--------GFSPD---- 114 (300)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 114 (300)
.+.|+++.|..++.+..... ..|+. ..|+.-.. ....+ +++.|...+++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35566667766666665432 12221 11222222 23344 777666666554222 12233
Q ss_pred -HhHHHHHHHHHhcCCChHH---HHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHH
Q 043969 115 -FHTYNILLHVLGKGDKPLA---ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTV 190 (300)
Q Consensus 115 -~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (300)
..+...++.+|...+..+. |.++++.+... .+..+.++..-+..+.+.++.+.+.+++..|... +......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHH
Confidence 2456677778877776554 55556666444 2333555656677777788899999999998876 2223445555
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHH-HHHHH----HHHHhccCC------HHHHHHHHHHHHH-CCCCCCHH
Q 043969 191 MITSYIA--AGELEKAQDLFDGMITKGQLPNVF-TYNSM----IRGFCMAGK------FDEACTMMKEMES-RGCNPNFL 256 (300)
Q Consensus 191 li~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l----~~~~~~~~~------~~~a~~~~~~~~~-~~~~~~~~ 256 (300)
++..+.. ....+.|...+..+......|... ....+ +-...+.++ .+...++++...+ .+.+.+..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 5555422 233456666666665554554443 11111 111222222 4445555554333 23334444
Q ss_pred HHHHHH-------HHHHhcCCHHHHHHHHHHHH
Q 043969 257 VYNTLV-------SNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 257 ~~~~li-------~~~~~~g~~~~a~~~~~~~~ 282 (300)
+-.++. ..+.+.+++++|.+.|+-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 433322 33567899999999998554
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.37 Score=42.15 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=59.7
Q ss_pred CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043969 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTL 261 (300)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (300)
....-+.+--+.-+...|+-.+|.++-.+.. .||-..|..=+.+++..+++++-+++-+... ++.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3444555666666677777777777666543 3677777777778888888877666655433 23445556
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 043969 262 VSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 262 i~~~~~~g~~~~a~~~~~~~~ 282 (300)
+.+|.+.|+.++|.+++.+..
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHhcccHHHHhhhhhccC
Confidence 677777777777777766543
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.69 E-value=0.063 Score=44.17 Aligned_cols=66 Identities=12% Similarity=-0.032 Sum_probs=42.4
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCH----HHHHHHHHHHHccCcHHHHHHHHHHhhhC
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFK----NSYNAILHALLGIRQYKLIEWVYQQMSDE 74 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (300)
|.+...++.+..+|.+.|++++|+..|++.... .|+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334556666666777777777777777766655 3442 24666677777777777777777766654
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.69 E-value=0.048 Score=44.85 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=41.1
Q ss_pred CcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc----ccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 148 PSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV----VCYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
.+...++.+..+|.+.|++++|...|+...+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455666666677777777777777666654 3442 23666666667777777777777666654
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.63 E-value=0.14 Score=42.87 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=81.3
Q ss_pred ccccHHHHHHHHHHhhhc-CCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043969 22 EVGLARKVVERFIKSKLF-NFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100 (300)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (300)
-.++++++.+....-.-. .++ ..-.+.+++-+.+.|-.+.|+++.+ |+. .-.....+.|+++.|.
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHH
Confidence 356666666655421111 111 2245666777777777777765532 221 1223445667777776
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043969 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (300)
++.++ ..+...|..|.+...+.|+++-|.+.|.+..+ +..|+-.|...|+.+...++.+.....|
T Consensus 339 ~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 55433 23566777777777777777777777766542 3455556666777766666666655543
Q ss_pred CCCccccHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDG 210 (300)
Q Consensus 181 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 210 (300)
-++....++.-.|+.++..+++.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 145555555566666666666554
No 228
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.094 Score=40.80 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=49.5
Q ss_pred CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 043969 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK---GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV 257 (300)
Q Consensus 181 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (300)
......+...++..-....+++.+...+-+++.. ...|+...+ ..++.|. .-++++++.++..=++.|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 3334444444444444455555555555554432 011111111 1222222 1244555555555555566666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 258 YNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 258 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+..+++.+.+.+++.+|.++...|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 6666666666666666655555555444
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.18 Score=40.76 Aligned_cols=124 Identities=13% Similarity=0.170 Sum_probs=83.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC-----CC---------CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043969 158 DGLSRAGNLDACKYFFDEMANK-----GC---------MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTY 223 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~-----~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 223 (300)
+.|.+.|++..|..-|+..... +. ..-..++..+..++.+.+++.+|+..-.+.+..+. +|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 3556666666666666554321 11 11234567788888999999999999988888743 477777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCC-HHHHHHHHHHHHHc
Q 043969 224 NSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN-TLVSNLRNAGK-LAEAHEVIRHMVEK 284 (300)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~-~~~a~~~~~~~~~~ 284 (300)
-.=.++|...|+++.|+..|+++++. .|+..... .++..-.+... .+...++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888999999999999999999885 55544444 44433333333 34446777777654
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.52 E-value=0.13 Score=34.59 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 227 IRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+......|+-++-.++..++.+. -.+++...-.+..+|.+.|+..++.+++.++.++|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33333344444444444333321 12333333333344444444444444444444433
No 231
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.50 E-value=0.7 Score=42.76 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043969 156 LMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235 (300)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (300)
....+.....+++|.-.|+..-+ ...-+.+|..+|+|++|+.+..++...... -..+-..|+.-+...++
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHccc
Confidence 33444455666666666655432 123456677777777777777766432100 11222567777777888
Q ss_pred HHHHHHHHHHHHH
Q 043969 236 FDEACTMMKEMES 248 (300)
Q Consensus 236 ~~~a~~~~~~~~~ 248 (300)
+-+|-++..+...
T Consensus 1015 h~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLS 1027 (1265)
T ss_pred chhHHHHHHHHhc
Confidence 8888777776664
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.46 E-value=0.16 Score=34.90 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 197 AAGELEKAQDLFDGMITKGQ--LPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+.|++++|.+.|+.+...-. .-....-..++.+|.+.+++++|...++++++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444443310 01122333444444444444444444444444
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.42 E-value=0.33 Score=38.12 Aligned_cols=223 Identities=15% Similarity=0.123 Sum_probs=128.6
Q ss_pred hccccHHHHHHHHHHhhhcC--CCcCHH------HHHHHHHHHHccC-cHHHHHHHHHHhhhC--------CCCCCH---
Q 043969 21 GEVGLARKVVERFIKSKLFN--FRPFKN------SYNAILHALLGIR-QYKLIEWVYQQMSDE--------GYAPDI--- 80 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 80 (300)
.+.|+.+.|...+.+..... ..|+.. .|+.-.. ....+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999998876643 234332 3444444 44555 888888777766443 122332
Q ss_pred --hhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHH
Q 043969 81 --LTYNIVMCAKYRLGKLD---QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTT 155 (300)
Q Consensus 81 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (300)
.++..++.++...+..+ +|.++++.+.... +-.+.++..-+..+.+.++.+.+.+.+.+|... +......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHH
Confidence 34566777887777654 5566666665442 334666767778888889999999999999886 3323445566
Q ss_pred HHHHHHh--CCCHHHHHHHHHHHHhCCCCCccccH-HH-HHH-HH--HhcCC------HHHHHHHHHHHHHC-CCCCCHH
Q 043969 156 LMDGLSR--AGNLDACKYFFDEMANKGCMPDVVCY-TV-MIT-SY--IAAGE------LEKAQDLFDGMITK-GQLPNVF 221 (300)
Q Consensus 156 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~-~~-li~-~~--~~~~~------~~~a~~~~~~~~~~-~~~p~~~ 221 (300)
++..+.. ......+...+..+....+.|....| .. ++. .+ .+.++ .+....++....+. +.+.+..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 5555522 23345566666666554455554311 11 111 11 11111 44455555543332 2333333
Q ss_pred H--------HHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 222 T--------YNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 222 ~--------~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
+ |+. ...+.+.+++++|.+.|+-..
T Consensus 241 ~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 3 332 334567899999999987543
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.41 E-value=0.42 Score=39.37 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=98.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 043969 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSG-FSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158 (300)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (300)
..+|...++.-.+..-++.|..+|-++.+.+ +.+++.++++++..++ .|++.-|.++|+--... ++.+..--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3456667777777777888888888888887 5567777888887765 57788888888875554 2333333456667
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 159 GLSRAGNLDACKYFFDEMANKGCMPD--VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGF 230 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (300)
.+...++-+.|..+|+....+ +..+ ...|..+|..-..-|+...+..+=+.+.+. .|...+......-|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 777888888888888855433 1222 456888888888888888887777777653 33443333333333
No 235
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.41 E-value=0.2 Score=35.55 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 224 NSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++-..++
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444555555555555555443221 1111233444444455544444444444443
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.13 Score=39.24 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHH
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGC--MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ-LP-NVFTYNSMI 227 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~ 227 (300)
.|+.-+.. .+.|++..|...|...++... .-....+-+|..++...|++++|..+|..+.+.-. .| -+...-.+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57766654 456779999999998887621 11244577888999999999999999988887521 12 246677788
Q ss_pred HHHhccCCHHHHHHHHHHHHHC
Q 043969 228 RGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888999999999999998876
No 237
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.37 E-value=0.053 Score=41.49 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=65.7
Q ss_pred CcCHHHHHHHHHHHHcc-----CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC----------------CHHHHH
Q 043969 42 RPFKNSYNAILHALLGI-----RQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG----------------KLDQFH 100 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 100 (300)
.-|..+|-..+..+... +..+-.-..++.|.+-|+.-|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34555677777666543 445566666778888888888888888887765432 234478
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChH
Q 043969 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPL 132 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (300)
.++++|...|+.||-.+-..|++++.+.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 88888988898899888888888888877643
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.16 Score=34.08 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=46.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHH---HHHHHHHHHhcCC
Q 043969 195 YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR-GCNPNFLV---YNTLVSNLRNAGK 270 (300)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~---~~~li~~~~~~g~ 270 (300)
....|+.+.|++.|.+.... .+-+...||.-.+++.-.|+.++|+.=+++..+. |-+ +... |..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 34556666666666655554 2224555666666666666666666655555543 211 2111 1112223455566
Q ss_pred HHHHHHHHHHHHHcC
Q 043969 271 LAEAHEVIRHMVEKG 285 (300)
Q Consensus 271 ~~~a~~~~~~~~~~~ 285 (300)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666666555
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.37 E-value=0.039 Score=42.17 Aligned_cols=101 Identities=19% Similarity=0.128 Sum_probs=76.6
Q ss_pred CchHHHHHHHHHhhc-----cccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHcc----------------CcHHHHHH
Q 043969 8 TTARTFNILICTCGE-----VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGI----------------RQYKLIEW 66 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~ 66 (300)
-|..+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+- .+-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 355666666666543 356677777888899999999999999999887554 23456889
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 043969 67 VYQQMSDEGYAPDILTYNIVMCAKYRLGK-LDQFHRLLDEMGR 108 (300)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 108 (300)
++++|...|+-||-.+-..+++++.+.+- ..+..++.-.|.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 99999999999999999999999988775 3444555545533
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.35 E-value=0.24 Score=41.57 Aligned_cols=130 Identities=13% Similarity=0.172 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (300)
..+.++.-+-+.|..+.|+++... +. .-.....+.|+++.|.++.++. .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 345555555555555555554322 11 1122333455555555443222 24445666666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 043969 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACT 241 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (300)
+.|+++-|++.|....+ |..|+-.|...|+.+.-.++.+.....|- ++....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666554432 44455555556665555555555444431 3334444444455555555
Q ss_pred HHH
Q 043969 242 MMK 244 (300)
Q Consensus 242 ~~~ 244 (300)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.30 E-value=0.21 Score=34.56 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 84 NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
..++..+...+.......+++.+...+ +.+...++.++..|++.+ ..+.+..+.. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 445555655666666666666666655 345556666666666543 2333333331 1 1223334456666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043969 164 GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA-GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (300)
+-++++..++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666655422 22233333333 5666666655541 14455665555544
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.4 Score=37.19 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=69.9
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHH
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKA 204 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (300)
....|+..+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345566666666666665542 2233444555666666666666666666654331111111222223334444444444
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 043969 205 QDLFDGMITKGQLP-NVFTYNSMIRGFCMAGKFDEACTMMKEMESR--GCNPNFLVYNTLVSNLRNAG 269 (300)
Q Consensus 205 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 269 (300)
..+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+... |.. |...-..++..+.--|
T Consensus 223 ~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 4444443332 2 4555555666666666666666655555443 222 3444555555555444
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.20 E-value=0.37 Score=36.55 Aligned_cols=79 Identities=18% Similarity=0.084 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhhhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGY--APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
..|+..+. -.+.|++++|...|+.+..+.+ +....+.-.++.++.+.+++++|...+++..+.--......|..-|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34554443 4577888888888888876532 12344455556677788888888888888766532222233444444
Q ss_pred HH
Q 043969 124 VL 125 (300)
Q Consensus 124 ~~ 125 (300)
++
T Consensus 115 gL 116 (254)
T COG4105 115 GL 116 (254)
T ss_pred HH
Confidence 43
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.43 Score=37.04 Aligned_cols=137 Identities=14% Similarity=0.179 Sum_probs=94.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 043969 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (300)
......|+...|...|....... .-+...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 35677899999999999887763 22456677888999999999999999998875532222222223344555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------hHHHHHHHhhhh
Q 043969 238 EACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG-------KYIHLVSKFKRY 297 (300)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~l~~~~~~~ 297 (300)
+...+-++.... +-|...-..+...+...|+.+.|++.+-.+.+++ .-..+++.+..+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 555555555543 2266677778888999999999999998888774 444555555443
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.26 Score=38.92 Aligned_cols=153 Identities=9% Similarity=0.016 Sum_probs=100.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc---CCCCcHhhHHHHHHHHHhCCCHHH
Q 043969 92 RLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV---GFDPSVLHFTTLMDGLSRAGNLDA 168 (300)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 168 (300)
..|+..+|-..++++.+. .|.|...+...=.++.-.|+.+.-...++++... +.|-.+..-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 457777777778887765 3667777777777888888888888888887654 122122222334445567888888
Q ss_pred HHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 169 CKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL---PNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
|++.-++..+.+ +.|.-.-.+....+.-.|+..++.++..+-...--. .-...|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888888777654 345555566777777788888888887664432111 1122344445556667888888888865
Q ss_pred H
Q 043969 246 M 246 (300)
Q Consensus 246 ~ 246 (300)
=
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 246
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.85 Score=40.06 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=88.8
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043969 150 VLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRG 229 (300)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 229 (300)
.-+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+... ++.-|...+.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3344555666777899999988877765 5789999999999999999999888766543 24567788999
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 230 FCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|.+.|+.++|.+.+.+.... .-...+|.+.|++.+|.+.--+-.+.+
T Consensus 754 c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~~rd~~ 800 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAEHRDGA 800 (829)
T ss_pred HHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHHhcChH
Confidence 99999999999988654321 156778888999888877765544433
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.72 Score=41.03 Aligned_cols=175 Identities=10% Similarity=0.090 Sum_probs=89.1
Q ss_pred HHHHhhccccHHHHHHHHHHhhhcCCCcCHH--HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 043969 16 LICTCGEVGLARKVVERFIKSKLFNFRPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRL 93 (300)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (300)
-++...+...++-|+.+-..- +..++.. ....-..-+.+.|++++|...|-+-+.. +.| ..++.-|...
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 344444444555555544332 1122211 2233333445667777776666554432 122 2244455555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHH
Q 043969 94 GKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF 173 (300)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (300)
.++.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 6666666677777776653 44445667777777777776655555443 2211 111234555556666666665554
Q ss_pred HHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 174 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (300)
..... +......++ -..+++++|++.+..+
T Consensus 487 ~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 43322 222222232 3566777777777665
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.3 Score=43.26 Aligned_cols=177 Identities=14% Similarity=0.148 Sum_probs=109.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM----CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
...-+..+.+...++.|..+-+. .+. +..+...++ .-+.+.|++++|...+-+.... +.| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 44566677777777777766543 322 333333333 4456778888888877665433 122 23344
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHH
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK 203 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 203 (300)
-|........-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 455555666667778888888765 55556788889999999888766665544 2211 2234566777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
|..+-.+... +......++. ..+++++|++.+..+.
T Consensus 482 a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 7776655432 3344444444 4588899988887543
No 249
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.073 Score=41.38 Aligned_cols=105 Identities=12% Similarity=0.101 Sum_probs=78.4
Q ss_pred CCCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcC---CCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH
Q 043969 4 NGFPTTARTFNILICTCGEVGLARKVVERFIKSKLFN---FRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI 80 (300)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (300)
.|.+.+..+...++..-...++++.+...+-+.+... ..|+. +-.++++.+.+ -+.++++.++..-++-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 5677777788888888777888889988887765531 12222 23345554443 4677888888888889999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043969 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSG 110 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (300)
++++.+|..+.+.+++.+|.++.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999988877775543
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.06 E-value=0.25 Score=33.29 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=50.9
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043969 184 DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCN 252 (300)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (300)
+.......+.++...|+-+.-.+++.++.+. -.|++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4445666778888999999999999998763 4578888899999999999999999999999998864
No 251
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.97 E-value=0.68 Score=37.50 Aligned_cols=249 Identities=15% Similarity=0.120 Sum_probs=119.4
Q ss_pred cccHHHHHHHHHHhhhcCCCcCHHHHHHHHH--HHHccCcHHHHHHHHHHhhhCCCCCCHh--hHHHHHHHHHhcCCHHH
Q 043969 23 VGLARKVVERFIKSKLFNFRPFKNSYNAILH--ALLGIRQYKLIEWVYQQMSDEGYAPDIL--TYNIVMCAKYRLGKLDQ 98 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 98 (300)
.||...|.+.-.+..+. +..|......++. +-.-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35555555555443321 1223322223332 223457777888878777753 2211 12222233345677777
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcHhh--H----------------------
Q 043969 99 FHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVG-FDPSVLH--F---------------------- 153 (300)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~---------------------- 153 (300)
|.++-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 777666655442 2334566777777777777777777776544321 1122110 1
Q ss_pred ---------------HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 043969 154 ---------------TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK-GQL 217 (300)
Q Consensus 154 ---------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~ 217 (300)
.....++.+.|+..++-.+++.+-+....|+ .+.. -...+.|+ .++.-+++.... ..+
T Consensus 252 A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk 325 (531)
T COG3898 252 ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--TALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--cHHHHHHHHHHHHhcC
Confidence 1122344455555555555555544422222 1111 11122332 222222211110 011
Q ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHc
Q 043969 218 P-NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL-RNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 218 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~ 284 (300)
| +..+-..+.++-...|++..|..--+.... ..|....|-.+.+.- ...|+-.++.+.+.+.++.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1 334444555555566666655554444443 356666666666554 3447777777777766653
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.27 Score=39.72 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=45.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-----CC---------CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRS-----GF---------SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHF 153 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~-----~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (300)
+.+.+.|++..|..-|+..... +. ..-..++..+..++.+.+++..|+..-++....+ +++.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3456677777777776664332 00 0112334444445555555555555555555542 3344333
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
-.-..++...|+++.|+..|+.+++.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34444555555555555555555543
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.92 E-value=0.54 Score=37.65 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=56.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC-----CCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH------
Q 043969 156 LMDGLSRAGNLDACKYFFDEMANK-----GCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK----GQLPNV------ 220 (300)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~------ 220 (300)
+..++...+.++++++.|+...+. ........+..|-..|.+..++++|.-+..+..+. ++. |.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 334444455555555555544321 01112334555666666666666655555443321 111 11
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 221 FTYNSMIRGFCMAGKFDEACTMMKEMESR----GCNPN-FLVYNTLVSNLRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 281 (300)
.....|.-++...|....|.+..++..+. |-.+. ......+.+.|...|+.|.|+.-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 11222333444555555555555544332 22211 123334445566666666665555543
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.45 Score=37.64 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=107.7
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHH----HHHHHHHhcCCH
Q 043969 126 GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYT----VMITSYIAAGEL 201 (300)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~ 201 (300)
-..|+..+|-..++++.+. .|.|...+...=.+|.-.|+.+.-...++.+... -.|+...|. ...-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467788888888888876 5778888888888999999999999999888654 123443332 233345578999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043969 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR---GCNPNFLVYNTLVSNLRNAGKLAEAHEVI 278 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 278 (300)
++|++.-++..+.+. .|.-.-......+--.|++.++.++..+-.+. +.-.-...|....-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998887643 35566667777777889999999887665432 11111223444455567789999999998
Q ss_pred HHH
Q 043969 279 RHM 281 (300)
Q Consensus 279 ~~~ 281 (300)
++=
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 754
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.75 E-value=0.25 Score=38.36 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=58.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHH-----cCCCCcHhhHH
Q 043969 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKE-----VGFDPSVLHFT 154 (300)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 154 (300)
..++..++..+...++.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4466677777777888888888888877664 56777788888888888888888888777654 47777777766
Q ss_pred HHHHHH
Q 043969 155 TLMDGL 160 (300)
Q Consensus 155 ~l~~~~ 160 (300)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666553
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.72 E-value=0.36 Score=32.48 Aligned_cols=91 Identities=12% Similarity=-0.109 Sum_probs=56.9
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---HHHHHHHHHhcCCC
Q 043969 54 ALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH---TYNILLHVLGKGDK 130 (300)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 130 (300)
+++..|+.+.|++.|.+.+..-++ ....||.-..++.-.|+.++|+.-+++..+..-..+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456677777777777777665322 66777777777777777777777776665442222222 22222334666677
Q ss_pred hHHHHHHHHHHHHcC
Q 043969 131 PLAALNLLNHMKEVG 145 (300)
Q Consensus 131 ~~~a~~~~~~~~~~~ 145 (300)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666655
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.65 Score=35.07 Aligned_cols=206 Identities=12% Similarity=0.111 Sum_probs=98.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.|.....+|...+++++|...+.+..+- ...+...|.+ ...+++|.-+.+++.+. +--...|+.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 5666777788888888888877666532 1212222211 12234444455555433 112233455555666
Q ss_pred cCCChHHHHHHHHHHHHc--CCCCcH--hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHH
Q 043969 127 KGDKPLAALNLLNHMKEV--GFDPSV--LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (300)
..|.++.|-..+++.-+. ++.|+. ..|..-+......++...|.+ .+...-+.+.+..+++
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---------------l~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---------------LYGKCSRVLVRLEKFT 167 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---------------HHHHhhhHhhhhHHhh
Confidence 666666655555544321 122221 112222222222222222222 2333344555556666
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 043969 203 KAQDLFDGMITK----GQLPN-VFTYNSMIRGFCMAGKFDEACTMMKEMESRG---CNPNFLVYNTLVSNLRNAGKLAEA 274 (300)
Q Consensus 203 ~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a 274 (300)
+|-..+.+-... ..-|+ -..|-..|-.+....|+..|...+++-.+.+ -+-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 655544432211 01112 1334555555666667777777777644321 122445666676665 56666665
Q ss_pred HHHH
Q 043969 275 HEVI 278 (300)
Q Consensus 275 ~~~~ 278 (300)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5544
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.62 E-value=0.23 Score=38.52 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES-----RGCNPNFLVYNTLV 262 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li 262 (300)
+..++..+...|+++.+...++++..... -+...|..++.+|.+.|+...|+..++.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 44455555555555555555555555422 2555555566666666665555555555543 35555555544444
Q ss_pred HH
Q 043969 263 SN 264 (300)
Q Consensus 263 ~~ 264 (300)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.61 E-value=0.071 Score=28.29 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=9.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 043969 226 MIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+...|.+.|++++|.+++++..+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.57 E-value=0.061 Score=28.55 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=13.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhC
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSDE 74 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (300)
+..+...+...|++++|+++|++.++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 261
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.57 E-value=1 Score=36.56 Aligned_cols=230 Identities=11% Similarity=0.053 Sum_probs=144.5
Q ss_pred CchHHHHHHHHHh--hccccHHHHHHHHHHhhhcCCCcCHH--HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhH
Q 043969 8 TTARTFNILICTC--GEVGLARKVVERFIKSKLFNFRPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTY 83 (300)
Q Consensus 8 ~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (300)
.|...+-.|+.+- .-.|+.+.|.+-|+.|... |... -..-|.-..-+.|..+.|...-+.....-.. -...+
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~ 191 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAA 191 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHH
Confidence 3444444455433 3368899999999988753 4433 2333333345667788887777776655322 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------------------CCCCHhH-HHHHHH
Q 043969 84 NIVMCAKYRLGKLDQFHRLLDEMGRSG---------------------------------------FSPDFHT-YNILLH 123 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------------~~~~~~~-~~~l~~ 123 (300)
...+...+..|+++.|+++++.-.... +.|+..- --....
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAr 271 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAAR 271 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 788888888888888888887653321 1233221 122235
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCC-ccccHHHHHHHHHhcCCH
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK-GCMP-DVVCYTVMITSYIAAGEL 201 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~ 201 (300)
++.+.|+..++-.+++.+-+.. |.+..+ .+..+.+.|+.. ..-++...+. .++| +..+--.+..+-...|++
T Consensus 272 alf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 6778888999999999988864 443333 233455666533 2223322211 1233 455666777888889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHC
Q 043969 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGFCM-AGKFDEACTMMKEMESR 249 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 249 (300)
..|..--+.... ..|....|..|...-.. .||-.++...+.+..+.
T Consensus 346 ~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 346 SAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888776665544 46788888877776544 59999999999888765
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.75 Score=34.75 Aligned_cols=204 Identities=12% Similarity=0.132 Sum_probs=103.7
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043969 13 FNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR 92 (300)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (300)
|..-..+|....++++|...+.+..+- ...+...|. ..+.++.|.-+.+++.+. +--...|+-....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 334445555566677776666554321 111211111 112344455555555443 1123445556666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc---C--CCCcHhhHHHHHHHHHhCCCHH
Q 043969 93 LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV---G--FDPSVLHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~ 167 (300)
.|..+.|-..+++.-+. ...-++++|+++|++.... + ...-...+..+-+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77776666665554321 1233455566665554332 0 0111223344445556666666
Q ss_pred HHHHHHHHHHhC----CCCCcc-ccHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHH
Q 043969 168 ACKYFFDEMANK----GCMPDV-VCYTVMITSYIAAGELEKAQDLFDGMITKG---QLPNVFTYNSMIRGFCMAGKFDEA 239 (300)
Q Consensus 168 ~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a 239 (300)
+|-..+..-... .-.++. ..|...|-.+.-..++..|...++.-.+.+ -.-+..+...|+.+| ..||.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 655554332211 001111 235555666677778888888888744331 123567788888887 45788877
Q ss_pred HHHH
Q 043969 240 CTMM 243 (300)
Q Consensus 240 ~~~~ 243 (300)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 6654
No 263
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.47 E-value=1.2 Score=36.87 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=71.1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 043969 186 VCYTVMITSYIAAGELEKAQDLFDGMITKG-QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVY-NTLVS 263 (300)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~ 263 (300)
..|...+.+-.+..-++.|..+|-+..+.| ..+++..+++++..++ .|+...|.++|+--... .||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777778888999999999999988 5678888899988775 47888999999865553 3444433 45556
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 043969 264 NLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~ 283 (300)
-+...++-+.|..+|+..++
T Consensus 475 fLi~inde~naraLFetsv~ 494 (660)
T COG5107 475 FLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHH
Confidence 67788888888888884443
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.38 E-value=0.8 Score=34.15 Aligned_cols=201 Identities=18% Similarity=0.130 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH-
Q 043969 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRS-GFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD- 158 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 158 (300)
..+......+...+++..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444445555555555555555544431 112333444444444555555555555555555432221 111111122
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCC--CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 043969 159 GLSRAGNLDACKYFFDEMANKGC--MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (300)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555666666666655533210 0111222222223444556666666666555542111244455555555555566
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 237 DEACTMMKEMESRGCNPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
+.|...+...... .|+ ...+..+...+...+..+.+...+.+..+.
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666555543 222 223333333333445556665555555443
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.19 E-value=1 Score=34.29 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=49.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHH
Q 043969 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD---FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTL 156 (300)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (300)
...|+..+ .-.+.|++++|.+.|+.+...- +.+ ..+--.++-++.+.++++.|+...++....-......-|...
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 34444444 4457888888888888887542 333 334445556777888888888888887775332222345455
Q ss_pred HHHHH
Q 043969 157 MDGLS 161 (300)
Q Consensus 157 ~~~~~ 161 (300)
|.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 55544
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.12 E-value=1.7 Score=36.52 Aligned_cols=97 Identities=14% Similarity=0.208 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 043969 189 TVMITSYIAAGELEKAQDLFDGMITKGQL-PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN-FLVYNTLVSNLR 266 (300)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 266 (300)
..+..++.+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+..+...+.+ ...|+..+--+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 45666777899999999999999865322 2445677899999999999999999988765433323 234555443333
Q ss_pred hcCC---------------HHHHHHHHHHHHHcC
Q 043969 267 NAGK---------------LAEAHEVIRHMVEKG 285 (300)
Q Consensus 267 ~~g~---------------~~~a~~~~~~~~~~~ 285 (300)
..++ -..|.+.+.+..+.+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 2222 123567777777776
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.07 E-value=0.37 Score=34.86 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPN--VFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
+..+...|.+.|+.++|.+.|.++.+....|. ...+-.+|+.....+++..+...+.+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44445555555555555555555544422221 2334444555555555555555544443
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.03 E-value=0.077 Score=26.71 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 258 YNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 258 ~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
+..|...|.+.|++++|.+++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566677777777777777777743
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.99 E-value=1.4 Score=37.00 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRG-CNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
|-..+-..+..++-+.|+.++|.+.+++|.+.. ..-+......|+.++...+.+.++..++.+..+-
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 334445678888889999999999999998642 2223457788999999999999999999998654
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.93 E-value=0.83 Score=33.09 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=33.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAP--DILTYNIVMCAKYRLGKLDQFHRLLDEM 106 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (300)
.+..+...|.+.|+.+.|.+.|.++.+....+ -...+-.++......+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55566666666666666666666665543222 2333444555555566666665555554
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.93 E-value=1.5 Score=34.79 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 043969 203 KAQDLFDGMITKGQLPNVFTYN 224 (300)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~ 224 (300)
.+.++++.+.+.|+++....|.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcCCcccccccc
Confidence 4555555555555555544444
No 272
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.81 E-value=0.044 Score=38.09 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=49.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE 200 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (300)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++. .+......++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555666677777777777777655455566677777777777666666666551 112233445555556666
Q ss_pred HHHHHHHHHHH
Q 043969 201 LEKAQDLFDGM 211 (300)
Q Consensus 201 ~~~a~~~~~~~ 211 (300)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.67 E-value=1.7 Score=34.40 Aligned_cols=132 Identities=11% Similarity=0.198 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHhHHHHHHHHHhcCCCh
Q 043969 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR--LG----KLDQFHRLLDEMGRSGF---SPDFHTYNILLHVLGKGDKP 131 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 131 (300)
+++...+++.|.+.|+.-+..+|-+....... .. ....+..+++.|++.-. .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56777899999999998887776654433333 22 35678899999987631 2344455555443 34444
Q ss_pred ----HHHHHHHHHHHHcCCCCcHh--hHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCccccHHHHHHH
Q 043969 132 ----LAALNLLNHMKEVGFDPSVL--HFTTLMDGLSRAGN--LDACKYFFDEMANKGCMPDVVCYTVMITS 194 (300)
Q Consensus 132 ----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (300)
+.+..+|+.+.+.|+..+.. ....++.......+ ..++..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 44677788888877765443 33333333322222 45788899999999999888887766543
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.63 E-value=0.1 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888887744
No 275
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.62 E-value=0.5 Score=29.84 Aligned_cols=63 Identities=10% Similarity=0.236 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263 (300)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (300)
+.-++.+-++.+......|++......+++|.+.+|+..|.++++-.+.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 34455555666666666677777777777777777777777777766533 1113334555443
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.44 E-value=2.2 Score=34.66 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP---NFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
....+|..++..+.+.|.++.|...+..+...+... .+...-.-.+.+...|+.++|...+++.++
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888889999999999999888888753221 334444455667788888999998888877
No 277
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.40 E-value=0.43 Score=30.48 Aligned_cols=61 Identities=10% Similarity=0.237 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (300)
-+..+-++.+......|++......+++|.+.+++..|.++++-.+.+ ..+....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 355566666666677777777777888888888888888877777654 2222225655554
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.39 E-value=1.3 Score=31.61 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=11.2
Q ss_pred hhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043969 71 MSDEGYAPDILTYNIVMCAKYRLGKL 96 (300)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (300)
+.+.+++|+...+..++..+.+.|++
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33344444444444444444444443
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.35 E-value=1.3 Score=31.60 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=68.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH-HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHh-hHHH-
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT-YNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVL-HFTT- 155 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~- 155 (300)
....|...+. ..+.+..++|+.-|..+.+.|...-+.. --.........|+...|...|+++-.....|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444444443 2355566666666666666553321111 1112223455666666777776665543333222 1111
Q ss_pred -HHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 156 -LMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 156 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
-.-.+...|.++......+-+-..+-+.....-..|.-+-.+.|++..|.+.|..+.+.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11234456666666666665554433223333344555556677777777777766654
No 280
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.21 E-value=0.53 Score=29.74 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 043969 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (300)
++.+-++.+....+.|++.+....+++|.+.+++..|.++++-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444555555555566666666666666666666666666665553
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.17 E-value=1.7 Score=32.28 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=155.6
Q ss_pred ccHHHHHHHHHHhhhcCCC-cCHHHHHHHHHHHHccCcHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043969 24 GLARKVVERFIKSKLFNFR-PFKNSYNAILHALLGIRQYKLIEWVYQQMSDE-GYAPDILTYNIVMCAKYRLGKLDQFHR 101 (300)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (300)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555443221 12457778888888999999999888887752 233456667777778888888999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHH-HHhcCCChHHHHHHHHHHHHcCC--CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043969 102 LLDEMGRSGFSPDFHTYNILLH-VLGKGDKPLAALNLLNHMKEVGF--DPSVLHFTTLMDGLSRAGNLDACKYFFDEMAN 178 (300)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (300)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 999887754322 222333333 78899999999999999865321 12334444445557788999999999999887
Q ss_pred CCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 179 KGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 179 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.........+..+...+...++++.|...+......... ....+..+...+...+..+++...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 632113567788888888899999999999998876322 2444555555555777899999988888875
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.13 E-value=1.7 Score=35.04 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=85.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhC-CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHhH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDE-GYAPD---ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF-----SPDFHT 117 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 117 (300)
.|..+.+++.+.-++.+++.+-..-... |..|. -...-++..++...+.++++++.|+...+... .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444444444445555555554443332 22221 12223345666667777777777777643211 112346
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCcHhhHH-----HHHHHHHhCCCHHHHHHHHHHHHh----CCCCC-
Q 043969 118 YNILLHVLGKGDKPLAALNLLNHMKEV----GFDPSVLHFT-----TLMDGLSRAGNLDACKYFFDEMAN----KGCMP- 183 (300)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~- 183 (300)
+-.|-..|.+..|+++|.-+.....+. ++..-..-|. .+.-++...|.+..|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777777777778888776665544332 2211111122 223355666776666666655432 23221
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 184 DVVCYTVMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (300)
.......+...|...|+.+.|+.-|+..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1233445666777778877777666553
No 283
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.87 E-value=0.97 Score=31.25 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=62.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCC-----CCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGY-----APDILTYNIVMCAKYRLGK-LDQFHRLLDEMGRSGFSPDFHTYNI 120 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (300)
..|.++.-....+++.....+++.+..... ..+...|..++.+..+..- ---+..+|.-+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 567777777777777777777776643210 2366788999988866655 4456777888888778889999999
Q ss_pred HHHHHhcCCChHHH
Q 043969 121 LLHVLGKGDKPLAA 134 (300)
Q Consensus 121 l~~~~~~~~~~~~a 134 (300)
++.++.+....+..
T Consensus 121 li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 121 LIKAALRGYFHDSL 134 (145)
T ss_pred HHHHHHcCCCCcch
Confidence 99988776444433
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.85 E-value=0.64 Score=29.71 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 043969 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
+..+-+..+....+.|++.+....+.+|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555666667777777777777777777777777666554
No 285
>PRK11906 transcriptional regulator; Provisional
Probab=93.71 E-value=3.6 Score=34.42 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 043969 96 LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (300)
..+|.++.+...+.+ +.|......+..+..-.++.+.|..+|++....+ +....+|........-.|+.++|.+.++.
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566666666655 4456666666665566666777777777766653 22334444444445556777777777766
Q ss_pred HHhCCCCCccc---cHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 176 MANKGCMPDVV---CYTVMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 176 ~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~ 211 (300)
..+. .|... ..-..+..|+.. ..+.|+.+|-+-
T Consensus 398 alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 398 SLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred Hhcc--CchhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 5443 23221 122223344333 456666665543
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.59 E-value=0.11 Score=25.83 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=10.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQF 99 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a 99 (300)
+..+|+.+...+...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444454455555554444
No 287
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.33 E-value=4.2 Score=33.93 Aligned_cols=200 Identities=14% Similarity=0.137 Sum_probs=110.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH-------HHHhc----CCChHHHHHHHHHHHHcCCCC
Q 043969 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL-------HVLGK----GDKPLAALNLLNHMKEVGFDP 148 (300)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~----~~~~~~a~~~~~~~~~~~~~~ 148 (300)
..+|..++....+.++...|.+.+.-+... .|+...-..++ +..+. ..+...-+.+|+......+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 456777888888888888888888777554 34433222221 12221 112223344555554433221
Q ss_pred cHhhHHHHH---H-HHHhCCCHHHHHHHHHHHHhCCCCCccccHHHH----HHHHHh---cCCHHHHHHHHHHHHHCCCC
Q 043969 149 SVLHFTTLM---D-GLSRAGNLDACKYFFDEMANKGCMPDVVCYTVM----ITSYIA---AGELEKAQDLFDGMITKGQL 217 (300)
Q Consensus 149 ~~~~~~~l~---~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~---~~~~~~a~~~~~~~~~~~~~ 217 (300)
.. .-.-++ . .+...+.-++|.++++.+.+-. .-|...-|.+ =..|.+ ...+.+-..+-+-+.+.|+.
T Consensus 376 qQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 QQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 11 111122 1 2333444778888888877641 1122222222 123332 23455666666666666776
Q ss_pred CCH----HHHHHHHHH--HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 218 PNV----FTYNSMIRG--FCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 218 p~~----~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|-. ..-|.+..+ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|+.++.++.-+.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~ 525 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNE 525 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCch
Confidence 533 333444332 4567888887654444433 67888888888888888888888888888877643
No 288
>PRK11906 transcriptional regulator; Provisional
Probab=93.30 E-value=4.3 Score=34.02 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc-cccHHHHHHHHHhcCCHHHHHHHH
Q 043969 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD-VVCYTVMITSYIAAGELEKAQDLF 208 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~ 208 (300)
+..+|.++-+...+.+ +.|......+..+....++.+.|...|++.... .|| ..+|........-.|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556777777777764 446666666766677778899999999988876 344 345555555566789999999999
Q ss_pred HHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 209 DGMITKGQLPNV---FTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 209 ~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
++..+. .|.. ...-..+..|+.. ..+.|+.++-+
T Consensus 396 ~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 986664 2332 2333334466654 46777777654
No 289
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.12 E-value=2 Score=29.65 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=33.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCC---cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKEVGFDP---SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSY 195 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (300)
+.|++++|.+.|+.+... .+. ....--.++.+|.+.++++.|...++..++.+.......|...+.++
T Consensus 22 ~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 445556666655555554 111 22333445555666666666666666555543222233344444443
No 290
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.12 E-value=1.6 Score=31.97 Aligned_cols=79 Identities=8% Similarity=-0.079 Sum_probs=50.4
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC---CCCCccccHHHHHHHHHhcCCH
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK---GCMPDVVCYTVMITSYIAAGEL 201 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~ 201 (300)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 557777777766655445555445544444 56777777777766543 2256677788888888888887
Q ss_pred HHHH
Q 043969 202 EKAQ 205 (300)
Q Consensus 202 ~~a~ 205 (300)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.06 E-value=0.34 Score=24.93 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 256 LVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 256 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
.+++.+...|...|++++|++++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666777777766666654
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.05 E-value=0.15 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhccCCHHHH
Q 043969 220 VFTYNSMIRGFCMAGKFDEA 239 (300)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a 239 (300)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444433
No 293
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.92 E-value=2 Score=31.51 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 043969 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR---GCNPNFLVYNTLVSNLRNAGKLAEA 274 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a 274 (300)
+.|...|-.+...+.--++.....+...|. ..|.+++..++.+..+. +-.+|+..+.+|+..+.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443334444444443333 34555555555555442 2244555566666666666665554
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.67 E-value=9.1 Score=36.08 Aligned_cols=43 Identities=9% Similarity=0.197 Sum_probs=22.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043969 195 YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246 (300)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (300)
+.....+++|.-.|...-+ ....+.+|...|+|++|+.+..++
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhh
Confidence 3345555555555554322 123455666666666666655544
No 295
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.58 E-value=4.1 Score=31.85 Aligned_cols=144 Identities=8% Similarity=0.031 Sum_probs=89.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhh-CCCCCCHhhHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCCCCHhHHHHHHH
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSD-EGYAPDILTYNIVMCAKYR-LG-KLDQFHRLLDEMGRS-GFSPDFHTYNILLH 123 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 123 (300)
|..++. +.....+|+.+|+..-. ..+--|..+...+++.... .+ ....-.++.+-+... +-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 33456677777774322 2344477777777766655 22 222233333333322 23567777888888
Q ss_pred HHhcCCChHHHHHHHHHHHHc-CCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHH-----HhCCCCCccccHHHHHHH
Q 043969 124 VLGKGDKPLAALNLLNHMKEV-GFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM-----ANKGCMPDVVCYTVMITS 194 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~li~~ 194 (300)
.++..+++.+-.++++..... +...|...|..+|......|+..-...+.++- .+.++..+...-..+-..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 888888888888888877655 55667788888888888888888777777653 334555454444444333
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.50 E-value=2.9 Score=29.95 Aligned_cols=135 Identities=14% Similarity=0.197 Sum_probs=75.2
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHh-hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccc-cHHHH
Q 043969 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVL-HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV-CYTVM 191 (300)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 191 (300)
+...|...++. .+.+..++|+.-|.++.+.|...-+. ..-.........|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 34445444443 34566777777777777765432221 11122334566777777777777776553333322 11222
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 192 IT--SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 192 i~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
=. .+...|.++....-.+.+...+.+.....-..|.-+-.+.|++.+|...|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 12 23456777777776666655544334444455666666777777777777776653
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=6.9 Score=34.00 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=52.3
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 043969 161 SRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240 (300)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 240 (300)
.+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|.+..+ |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 44566666665554432 444566666666666666666666665433 334455555555555444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043969 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIR 279 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 279 (300)
.+-....+.|. .|....+|...|+++++.+++.
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHH
Confidence 44444444432 1223334555566666555543
No 298
>PRK09687 putative lyase; Provisional
Probab=92.32 E-value=4.6 Score=31.83 Aligned_cols=220 Identities=11% Similarity=0.034 Sum_probs=133.4
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHhH
Q 043969 42 RPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKL----DQFHRLLDEMGRSGFSPDFHT 117 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 117 (300)
.+|.......+.++...|.. .+...+..+.+. +|...=...+.++.+.|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 45555666677777777653 333444444433 3555555566677777763 4677777766433 467676
Q ss_pred HHHHHHHHhcCCCh-----HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHH
Q 043969 118 YNILLHVLGKGDKP-----LAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMI 192 (300)
Q Consensus 118 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 192 (300)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHH
Confidence 66666666655422 223333333333 34666777778888888874 455555555543 3444555555
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 043969 193 TSYIAAG-ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKL 271 (300)
Q Consensus 193 ~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 271 (300)
.++++.+ +.+.+...+..+... ++..+-...+.++.+.|+. .|...+-+..+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6666543 244666666666644 4667777788888888884 5555555555432 2 234677888888885
Q ss_pred HHHHHHHHHHHHc
Q 043969 272 AEAHEVIRHMVEK 284 (300)
Q Consensus 272 ~~a~~~~~~~~~~ 284 (300)
+|...+..+.+.
T Consensus 252 -~a~p~L~~l~~~ 263 (280)
T PRK09687 252 -TLLPVLDTLLYK 263 (280)
T ss_pred -hHHHHHHHHHhh
Confidence 688888888763
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.32 E-value=0.57 Score=22.87 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 257 VYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 257 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555556666666666666665554
No 300
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.29 E-value=0.8 Score=24.28 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=11.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 262 VSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 262 i~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
..+|...|+.+.|.++++++.+.|
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHcC
Confidence 344444444444444444444444
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.07 E-value=0.51 Score=24.24 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 220 VFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677788888888888888888887764
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.00 E-value=0.59 Score=22.81 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=15.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555566666666666666665554
No 303
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.93 E-value=3.7 Score=29.98 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=10.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 043969 264 NLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~ 284 (300)
.+...|+-++|+.-|++.++.
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHc
Confidence 444445555555555544444
No 304
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.90 E-value=5 Score=31.37 Aligned_cols=146 Identities=10% Similarity=0.074 Sum_probs=91.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHH-cCCCCcHhhHHHHHHHHHh-CC-CHHHHHHHHHHHH-hCCCCCccccHHHHHH
Q 043969 118 YNILLHVLGKGDKPLAALNLLNHMKE-VGFDPSVLHFTTLMDGLSR-AG-NLDACKYFFDEMA-NKGCMPDVVCYTVMIT 193 (300)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~-~~~~~~~~~~~~~li~ 193 (300)
|..|+. +.....+|+++|+.... ..+-.|..+...+++.... .+ ....-.++.+-+. ..+..++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 23445667777774322 2344566666666666554 22 2222223333332 2245677788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHHH
Q 043969 194 SYIAAGELEKAQDLFDGMITK-GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM-----ESRGCNPNFLVYNTLVSNLR 266 (300)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~li~~~~ 266 (300)
.++..+++.+-.+++...... +..-|...|..+|......|+..-...+.++= ...|+..+...-.++-..+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 999999999999988887655 55567888999999999999887777766542 23466666666665555443
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.82 E-value=5.2 Score=31.35 Aligned_cols=183 Identities=14% Similarity=0.098 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc------CC-----ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGK------GD-----KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (300)
+.-.+..++..+...+....++...+.++.. .| -..+|+++|.-+.++.- ...+-..++.++-...+
T Consensus 104 ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D 181 (361)
T COG3947 104 EKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKG--KEVTSWEAIEALWPEKD 181 (361)
T ss_pred HHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcC--CcccHhHHHHHHccccc
Confidence 3444444444443334445566666666652 11 13568888888877532 23334556666666666
Q ss_pred HHHHHHHHHHHH-------hC-------------------CCCCccccHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCC
Q 043969 166 LDACKYFFDEMA-------NK-------------------GCMPDVVCYTVMITSYIA-AGELEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 166 ~~~a~~~~~~~~-------~~-------------------~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p 218 (300)
..+|...+.... .. ++.-|..-|...+...-. .-.++++.++....... .-|
T Consensus 182 ~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgd-yl~ 260 (361)
T COG3947 182 EKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGD-YLP 260 (361)
T ss_pred hhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCC
Confidence 666666554431 10 122244445555544332 23466666666654322 111
Q ss_pred C-----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 219 N-----------------VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 219 ~-----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 281 (300)
+ ..+++.....|...|.+.+|.++.++.+..+ +.+...+..+++.+...|+--.|.+-++++
T Consensus 261 e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 261 EADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 1 2245666778999999999999999998863 557788889999999999988888877777
Q ss_pred HH
Q 043969 282 VE 283 (300)
Q Consensus 282 ~~ 283 (300)
.+
T Consensus 340 a~ 341 (361)
T COG3947 340 AE 341 (361)
T ss_pred HH
Confidence 54
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.82 E-value=0.7 Score=22.41 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 257 VYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 257 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
.+..+..++...|++++|.+.+++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777776653
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.80 E-value=3.4 Score=29.18 Aligned_cols=13 Identities=31% Similarity=0.148 Sum_probs=4.9
Q ss_pred CCChHHHHHHHHH
Q 043969 128 GDKPLAALNLLNH 140 (300)
Q Consensus 128 ~~~~~~a~~~~~~ 140 (300)
.|++.+|..+|++
T Consensus 57 r~~w~dA~rlLr~ 69 (160)
T PF09613_consen 57 RGDWDDALRLLRE 69 (160)
T ss_pred hCCHHHHHHHHHH
Confidence 3333333333333
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.61 E-value=3.6 Score=29.07 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=25.3
Q ss_pred HccCcHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 56 LGIRQYKLIEWVYQQMSDEGYA-PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
...++.+++..++..+....+. |...++.. ..+...|++.+|.++|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 4445566666666555544211 11222222 2345566666666666665444
No 309
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.40 E-value=4.9 Score=31.23 Aligned_cols=87 Identities=9% Similarity=0.057 Sum_probs=43.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh----
Q 043969 87 MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR---- 162 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 162 (300)
|.+++..+++.+++...-+.-+.--+..+.+...-|-.|.+.+++..+.++-..-....-.-+...|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4566666666666554443322211223344455555566666666666665555443222223335555444433
Q ss_pred -CCCHHHHHHHH
Q 043969 163 -AGNLDACKYFF 173 (300)
Q Consensus 163 -~~~~~~a~~~~ 173 (300)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666665554
No 310
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.28 E-value=4.9 Score=30.05 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=95.8
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHH
Q 043969 115 FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS 194 (300)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (300)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-|. +.-.|+++.|.+-+...-+.. |+ ..|..+--.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D--~~-DPfR~LWLY 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD--PN-DPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC--CC-ChHHHHHHH
Confidence 56788887778888999999999988887643333334444343 334577777776665554432 11 123333222
Q ss_pred H-HhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 043969 195 Y-IAAGELEKAQDLFD-GMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN-------FLVYNTLVSNL 265 (300)
Q Consensus 195 ~-~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~ 265 (300)
. -+.-++.+|..-+. +... .|..-|...|-.|.- |+.. ...+++++... -.-+ ..||..+..-+
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHH
Confidence 2 22345666654443 3322 244455444433321 2221 12233333332 1111 35677777888
Q ss_pred HhcCCHHHHHHHHHHHHHcChHHHHHHHhh
Q 043969 266 RNAGKLAEAHEVIRHMVEKGKYIHLVSKFK 295 (300)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~~l~~~~~ 295 (300)
...|+.++|..+|+-.+.+++|+-+--.|+
T Consensus 248 l~~G~~~~A~~LfKLaiannVynfVE~RyA 277 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNVYNFVEHRYA 277 (297)
T ss_pred hccccHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 888999999999999998887765544444
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.27 E-value=0.77 Score=22.25 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=15.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
.+..+...+...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666665554
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.17 E-value=9.6 Score=33.20 Aligned_cols=150 Identities=13% Similarity=0.058 Sum_probs=101.0
Q ss_pred ccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043969 22 EVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHR 101 (300)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (300)
-.++++.|..++.... ...-+.+.+.+.+.|-.++|+++ .+|... -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHH
Confidence 3466666666544332 22556677777777777777644 223322 1234457889988887
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043969 102 LLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181 (300)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (300)
+..+. .+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 76654 3567799999999999999999988877654 45666677778887777777677666653
Q ss_pred CCccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (300)
.|....+|...|+++++.+++.+-
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233445667789999998887654
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.13 E-value=0.91 Score=22.06 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 257 VYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 257 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777777654
No 314
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.66 E-value=9.1 Score=32.07 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=50.5
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHhc---cCCHHHHHHHHHHHHHCCCCCCH----HHHHH
Q 043969 193 TSYIAAGE-LEKAQDLFDGMITKGQLPNVFTYNSMI----RGFCM---AGKFDEACTMMKEMESRGCNPNF----LVYNT 260 (300)
Q Consensus 193 ~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 260 (300)
.-+-+.|. -++|+.+++.+.+-. .-|...-|.+. .+|.+ ...+.+-..+-+-+.+.|++|-. ..-+.
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 33555665 888999999888752 22443333222 23332 23455666666666678887754 34445
Q ss_pred HHHH--HHhcCCHHHHHHHHHHH
Q 043969 261 LVSN--LRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 261 li~~--~~~~g~~~~a~~~~~~~ 281 (300)
|.++ +...|++.++.-+-.=+
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 5443 46789998876544333
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.43 E-value=9.9 Score=32.14 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=82.7
Q ss_pred HHHHHHccCcHHHHHH-HHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCC
Q 043969 51 ILHALLGIRQYKLIEW-VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (300)
-|.-....|+...|-+ ++..+....-.|+.... ....+...|+++.+.+.+....+. +.....+...+++...+.|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 3444456677766554 44444444334444333 334466789999999988776543 2445677888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043969 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (300)
+++.|..+-+.|....++ +..............|-++++...|+++...+
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999888876554 33333333334455677888888888886553
No 316
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.35 E-value=5.3 Score=31.04 Aligned_cols=92 Identities=7% Similarity=-0.053 Sum_probs=60.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
....-|.+++..+++.+++...-+..+..-+..+.....-|-.|.+.++...+.++-..-....-.-+...|..++..|.
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 34556788889999998887776655542223344455555668888888888877766554422223344777666554
Q ss_pred -----cCCChHHHHHHH
Q 043969 127 -----KGDKPLAALNLL 138 (300)
Q Consensus 127 -----~~~~~~~a~~~~ 138 (300)
=.|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 468889988877
No 317
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.21 E-value=0.91 Score=24.08 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=13.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC
Q 043969 226 MIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445556666666666666655543
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.20 E-value=0.1 Score=36.23 Aligned_cols=46 Identities=4% Similarity=-0.046 Sum_probs=17.3
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043969 55 LLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100 (300)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (300)
+.+.+.......+++.+...+...+....+.++..|++.++.+...
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~ 62 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLL 62 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHH
Confidence 3333344444444444443332223344444444444443333333
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.18 E-value=4.2 Score=30.37 Aligned_cols=77 Identities=9% Similarity=-0.005 Sum_probs=50.1
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSG--FSPDFHTYNILLHV 124 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 124 (300)
+.+..++.+.+.++..+++...++-++..+. |..+-..++..++-.|++++|..-++-.-... ..+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4456667777788888888887777766433 56666677788888888888877666654432 12234455555543
No 320
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=89.83 E-value=4.2 Score=27.30 Aligned_cols=59 Identities=14% Similarity=0.317 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043969 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262 (300)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (300)
+..+-+..+..-.+.|++......+++|.+.+|+..|.++|+-.+.+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 44455555555667777777777777777777777777777776654 222333454444
No 321
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.55 E-value=13 Score=33.15 Aligned_cols=90 Identities=16% Similarity=0.062 Sum_probs=40.7
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHhc--
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSG-FSPDFHTYNILLHVLGK-- 127 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 127 (300)
....+.-.|+++.|.+.+-. ..+...+..++.+.+.-+.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34555667889998888766 2233445556555554433222111111 2221111 01122456777777765
Q ss_pred -CCChHHHHHHHHHHHHcC
Q 043969 128 -GDKPLAALNLLNHMKEVG 145 (300)
Q Consensus 128 -~~~~~~a~~~~~~~~~~~ 145 (300)
..++..|.+++--+....
T Consensus 339 ~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFK 357 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-
T ss_pred hccCHHHHHHHHHHHHHcC
Confidence 567888888888776643
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.54 E-value=0.84 Score=21.88 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 260 TLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 260 ~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445566667777777777766653
No 323
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.51 E-value=6.8 Score=28.91 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=67.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCc-----cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043969 157 MDGLSRAGNLDACKYFFDEMANKGCMPD-----VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231 (300)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (300)
.+-+.+.|++++|..-|.+.... +++. ...|..-..++.+.+.++.|+.--.+.++.+.. .......-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 34567889999999999988876 2222 234555566778888899998888887776432 3344444566788
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHH
Q 043969 232 MAGKFDEACTMMKEMESRGCNPNFL 256 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (300)
+..++++|++=+..+.+. .|...
T Consensus 180 k~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--CcchH
Confidence 888899999988888875 44443
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.33 E-value=4 Score=30.46 Aligned_cols=76 Identities=4% Similarity=-0.118 Sum_probs=48.0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCC--CCCCHhhHHHHHHH
Q 043969 13 FNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEG--YAPDILTYNIVMCA 89 (300)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 89 (300)
.+.-++.+.+.+...+++...+.-.+.. +.+...-..++..++-.|++++|..-++-.-+.. ..+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445566667777888887777655442 3445566778888888888888876666554432 23344556666544
No 325
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=89.19 E-value=1.8 Score=25.04 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
.+...++++.+... +.|..-.-.+|.+|...|++++|.++++++.+.
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444444444432 234444556677777777777777777776654
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.05 E-value=0.76 Score=20.98 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 043969 260 TLVSNLRNAGKLAEAHEVIR 279 (300)
Q Consensus 260 ~li~~~~~~g~~~~a~~~~~ 279 (300)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44455556666666665543
No 327
>PHA02875 ankyrin repeat protein; Provisional
Probab=88.90 E-value=13 Score=31.23 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=104.7
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCcCHHH--HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh--hHHHHHHHHHh
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNS--YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDIL--TYNIVMCAKYR 92 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 92 (300)
+....+.|+.+-+..+++ .|..|+... ..+.++.++..|+.+-+ +.+.+.|..|+.. .....+...+.
T Consensus 6 L~~A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHH
Confidence 334455677765555554 455555432 33455566677776544 4445566555432 12234455667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhh--HHHHHHHHHhCCCHHHHH
Q 043969 93 LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLH--FTTLMDGLSRAGNLDACK 170 (300)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~ 170 (300)
.|+.+.+..+++.-....-..+..-. +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+.
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 88887765555432111001111112 233333445655 34555556665554321 123344455677776555
Q ss_pred HHHHHHHhCCCCCc---cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHH
Q 043969 171 YFFDEMANKGCMPD---VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTY---NSMIRGFCMAGKFDEACTMMK 244 (300)
Q Consensus 171 ~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~ 244 (300)
.++ +.|..++ ..-.+.+. ..+..|+.+-+ +.+.+.|..|+...- ...+...+..|+.+ +.+
T Consensus 153 ~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~ 219 (413)
T PHA02875 153 LLI----DHKACLDIEDCCGCTPLI-IAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVR 219 (413)
T ss_pred HHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHH
Confidence 444 3443332 22333333 34556765544 444556666554321 23444344556654 445
Q ss_pred HHHHCCCCCCHH
Q 043969 245 EMESRGCNPNFL 256 (300)
Q Consensus 245 ~~~~~~~~~~~~ 256 (300)
-+.+.|..++..
T Consensus 220 ~Ll~~gad~n~~ 231 (413)
T PHA02875 220 LFIKRGADCNIM 231 (413)
T ss_pred HHHHCCcCcchH
Confidence 556777777653
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.88 E-value=0.98 Score=21.63 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=14.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 225 SMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.+..++.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445555566666666666666553
No 329
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.81 E-value=4.3 Score=27.26 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 043969 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157 (300)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (300)
+..+.+..+..-.+.|++.+....++++.+.+|+..|.++|+-++.. ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34555666666777888888888888888888888888888887765 233333455444
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.72 E-value=16 Score=32.13 Aligned_cols=250 Identities=13% Similarity=0.049 Sum_probs=147.7
Q ss_pred hhccccHHHHHHHHHHhhh-------cCCCcCHHHHHHHHHHHHccC-----cHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 20 CGEVGLARKVVERFIKSKL-------FNFRPFKNSYNAILHALLGIR-----QYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
++...|.+.|+.++..... .+ .....+-+..+|.+.. +.+.|..++....+.|.+ +....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 4456788999999988755 33 2224566777776643 667899999998888743 444433333
Q ss_pred HHHHh-cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH--HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC
Q 043969 88 CAKYR-LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV--LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164 (300)
Q Consensus 88 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (300)
..... ..+...|.++|...-+.|.. ...-+..++.. .....+...|..++.+..+.| .|....-...+..+.. +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 22222 24678999999999888832 22222222221 123457888999999999887 3332223333444444 7
Q ss_pred CHHHHHHHHHHHHhCCCCCccccHHHHHHH-H---Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 043969 165 NLDACKYFFDEMANKGCMPDVVCYTVMITS-Y---IA----AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA--- 233 (300)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~---~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 233 (300)
.++.+...+..+.+.|.. ...+-...+.. . .. ..+...+..++......| +......+-..|..-
T Consensus 412 ~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~ 487 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGT 487 (552)
T ss_pred cccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCC
Confidence 777777777776665532 22222222111 1 11 225666777777776665 445555555555443
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcC
Q 043969 234 -GKFDEACTMMKEMESRGCNPNFLVYNTLVSNL----RNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 234 -~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+++.|...+......+ ......+-..+ .-.. +..|.+++++..+.+
T Consensus 488 ~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 488 GRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred CCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcC
Confidence 35788888888777664 22222232222 1223 789999999988876
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.37 E-value=7.7 Score=28.04 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHcc---Cc-------HHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcC
Q 043969 26 ARKVVERFIKSKLFNFRPFKNSYNAILHALLGI---RQ-------YKLIEWVYQQMSDEGYAPD-ILTYNIVMCAKYRLG 94 (300)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 94 (300)
++.|.+..+..-..+ +.|...++....++... .+ +++|..-|++.+.. .|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 455555555533333 45555555555554433 33 23344444444444 444 355655665554432
Q ss_pred ----C-------HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 043969 95 ----K-------LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVG 145 (300)
Q Consensus 95 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (300)
+ +++|...|++.... .|+...|..-+.... +|-.+..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 2 45566666666655 688888888877763 3556666665554
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.35 E-value=15 Score=31.21 Aligned_cols=120 Identities=10% Similarity=0.031 Sum_probs=77.5
Q ss_pred HhcCCHHHHHH-HHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHH
Q 043969 91 YRLGKLDQFHR-LLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDAC 169 (300)
Q Consensus 91 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (300)
...|++-.|-+ ++..++.. +-++.........+...|+++.+.+.+...... +.....+...+++...+.|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 34566655544 44444443 223333333344566788999998888776654 334556778888888899999999
Q ss_pred HHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 170 KYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
...-..|....+. +...........-..|-++++...|+++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9988888776554 3333333333345567788898888887654
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.09 E-value=9.8 Score=28.89 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHH
Q 043969 90 KYRLGKLDQFHRLLDEM 106 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~ 106 (300)
+.-.+.+++|.+++.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 33445666666666554
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.09 E-value=20 Score=32.38 Aligned_cols=56 Identities=14% Similarity=-0.044 Sum_probs=38.3
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCc---CHHHHHHHHHHHHccCcHHHHHHHHHHhhhC
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRP---FKNSYNAILHALLGIRQYKLIEWVYQQMSDE 74 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (300)
++.+.+.+.+++|++..+..... .| ........|..+...|++++|-...-.|...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn 421 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN 421 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc
Confidence 34456677888888888775543 33 2336677888888888888888777666543
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.05 E-value=16 Score=31.29 Aligned_cols=165 Identities=10% Similarity=0.083 Sum_probs=97.3
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
.|...+-+++..++....+.-+..+..++...| -+...|..++..|... ..+.-..+|+++.+..+. |...-..+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455666677777777777777777777776654 4445677777777776 456666777777766443 333333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHhHHHHHHHHHhcCCChHHHHHHHHHHHHc-CCCCcHhhHHHHHHHHH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSP-----DFHTYNILLHVLGKGDKPLAALNLLNHMKEV-GFDPSVLHFTTLMDGLS 161 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 161 (300)
. +...++.+.+...|.++..+=++. -...|..+.... ..+.+..+.+..++... |...-...+.-+-.-|.
T Consensus 140 ~-~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 D-KYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred H-HHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3 334466677777776664432210 122444444322 34556666666665543 33333444555556677
Q ss_pred hCCCHHHHHHHHHHHHhC
Q 043969 162 RAGNLDACKYFFDEMANK 179 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~ 179 (300)
...++.+|.+++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 778888888888766654
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.82 E-value=2 Score=20.73 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=19.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777777777777777665
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.74 E-value=7.4 Score=27.12 Aligned_cols=17 Identities=12% Similarity=0.047 Sum_probs=7.1
Q ss_pred cCCChHHHHHHHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKE 143 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~ 143 (300)
..|++++|.++|+++.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 33444444444444433
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.55 E-value=19 Score=31.67 Aligned_cols=212 Identities=14% Similarity=0.089 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHH----HH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHhHHHHHHHHHhcC
Q 043969 61 YKLIEWVYQQMSDEGYAPDILTYNIVM----CA-KYRLGKLDQFHRLLDEMGR-------SGFSPDFHTYNILLHVLGKG 128 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 128 (300)
...+.++++...+.|. ......+. .+ +....|.+.|..+++...+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4568888888877762 22222222 22 3455688888888888766 44 233455566666653
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHH----hc
Q 043969 129 D-----KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR-AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYI----AA 198 (300)
Q Consensus 129 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 198 (300)
. +.+.|+.++....+.|. |+....-..+..... ..+...|..+|...-+.|.. . .+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcC
Confidence 3 56778888888888763 344433333322222 24677888888888877632 2 2222222221 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HH---HHh----cCC
Q 043969 199 GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV-SN---LRN----AGK 270 (300)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~---~~~----~g~ 270 (300)
.+...|..++++..+.| .|...--...+..+.. ++++.+.-.+..+.+.|... ..+-...+ .. ... ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccc
Confidence 47888888888888887 3332222333344444 67777776666666655431 11111111 11 111 225
Q ss_pred HHHHHHHHHHHHHcC
Q 043969 271 LAEAHEVIRHMVEKG 285 (300)
Q Consensus 271 ~~~a~~~~~~~~~~~ 285 (300)
.+.+...+.+....|
T Consensus 455 ~~~~~~~~~~a~~~g 469 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG 469 (552)
T ss_pred hhHHHHHHHHHHhcc
Confidence 666666666666666
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.38 E-value=3.5 Score=25.07 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=26.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 043969 232 MAGKFDEACTMMKEMESRGCNPN--FLVYNTLVSNLRNAGKLAEAHEV 277 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~ 277 (300)
...+.++|+..|....+.-..+. ..++..++++|...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665422222 23455666666666666666554
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.51 E-value=3.2 Score=33.24 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 157 MDGLSRAGNLDACKYFFDEMANKGCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
.+-|.+.|.+++|++.|...... .| +.+++..-..+|.+..++..|..=-...+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35677888888888888777665 34 778888888888888888877765555544
No 341
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=17 Score=29.26 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=26.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhC---CCCCccccHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 157 MDGLSRAGNLDACKYFFDEMANK---GCMPDVVCYT--VMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
+....+.++.++|.++++++.+. --.|+...|. .+...+...|+.+++.+++.+..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444445566666666555432 1123333332 233444455555555555555544
No 342
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.64 E-value=12 Score=27.63 Aligned_cols=87 Identities=10% Similarity=0.024 Sum_probs=38.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC
Q 043969 91 YRLGKLDQFHRLLDEMGRSGFSPD-----FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165 (300)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (300)
.+.|++++|..-|......- ++. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 34555555555555544431 111 112222233445555555555555555443211 11111222334555555
Q ss_pred HHHHHHHHHHHHhC
Q 043969 166 LDACKYFFDEMANK 179 (300)
Q Consensus 166 ~~~a~~~~~~~~~~ 179 (300)
++.|+.=|..+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555544
No 343
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.98 E-value=25 Score=30.59 Aligned_cols=120 Identities=15% Similarity=0.213 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ--LPNVFTYNSMIR 228 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~ 228 (300)
.+|...+..-.+.|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+--. .|....+.+.+.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 44455555555555555555555544321 111122233333333334555555555554443322 223333332222
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 043969 229 GFCMAGKFDEACTMMKEMESRGCNPNFLV-YNTLVSNLRNAGKLAEAH 275 (300)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~ 275 (300)
-..|++..|..+++.+.+.- |+..- -..-+....+.|+.+.+.
T Consensus 377 --e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 377 --ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred --HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 23467777777777766642 33221 112233345666666665
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.94 E-value=13 Score=27.30 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=43.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCc--HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCH
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPS--VLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGEL 201 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 201 (300)
.+...+++++|..-++.........+ ...-..|.+.....|.++.|...++.....+. .......--..+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCch
Confidence 35555666666666655543211100 11112333445556666666666655554421 112222333455566666
Q ss_pred HHHHHHHHHHHHCC
Q 043969 202 EKAQDLFDGMITKG 215 (300)
Q Consensus 202 ~~a~~~~~~~~~~~ 215 (300)
++|..-|....+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 66666666665553
No 345
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.90 E-value=32 Score=31.67 Aligned_cols=193 Identities=14% Similarity=0.109 Sum_probs=104.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHHHH-HHhcCCChHHHHHHHHHHHHc----CCCCcHhhHHHHH
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPDF-------HTYNILLH-VLGKGDKPLAALNLLNHMKEV----GFDPSVLHFTTLM 157 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 157 (300)
.....++++|..++.++...-..|+. ..++.+-. .....|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999998887554322221 12333322 234578899999988877654 1223445566677
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCcccc---HHHHH--HHHHhcCCH--HHHHHHHHHHHHC--CCC----CCHHHHH
Q 043969 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVC---YTVMI--TSYIAAGEL--EKAQDLFDGMITK--GQL----PNVFTYN 224 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li--~~~~~~~~~--~~a~~~~~~~~~~--~~~----p~~~~~~ 224 (300)
.+..-.|++++|..+.....+.--.-+... |..+. ..+...|+. .+....|...... +-+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777888999999998877765422223332 23332 224455632 2333333333222 111 1234455
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCC--CCCCH--HHH--HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 225 SMIRGFCMAGKFDEACTMMKEMESRG--CNPNF--LVY--NTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+..++.+ .+.+..-...-.+.| ..|.. ... ..++......|+.++|...+.++....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 55555555 333322222222211 12222 222 256667788899999999998887643
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.76 E-value=11 Score=26.30 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=24.1
Q ss_pred cCcHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 58 IRQYKLIEWVYQQMSDEGYA-PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
.++.+++..+++.|.-..++ +...++... .+...|++++|.++|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443211 122233222 244556666666666665544
No 347
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.66 E-value=9.3 Score=28.10 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 216 QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 216 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
..|+..+|..++.++...|+.++|.++.+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566677777777777777777777766666653
No 348
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.78 E-value=19 Score=28.10 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHH
Q 043969 189 TVMITSYIAAGELEKAQDLFDGMITK-----GQL------PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRG-CNPNFL 256 (300)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 256 (300)
..+...|...+++.+..++++++... |-. .=...|..=|+.|....+-.+...+++...... --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 34555555666666666666655432 100 013456666666666666666666666555321 123332
Q ss_pred HHHHHHHHH-----HhcCCHHHHHHHH
Q 043969 257 VYNTLVSNL-----RNAGKLAEAHEVI 278 (300)
Q Consensus 257 ~~~~li~~~-----~~~g~~~~a~~~~ 278 (300)
.. .+|+-| .+.|++++|..-|
T Consensus 229 Im-GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 229 IM-GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred HH-hHHHHcCCccccccchHHHHHhHH
Confidence 22 233333 4556666665433
No 349
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.62 E-value=32 Score=30.74 Aligned_cols=182 Identities=13% Similarity=0.182 Sum_probs=104.2
Q ss_pred HHHHHHHhh-hcCCCcCHH--HHHHHHHHHH-ccCcHHHHHHHHHHhhhCCCCCCHh-----hHHHHHHHHHhcCCHHHH
Q 043969 29 VVERFIKSK-LFNFRPFKN--SYNAILHALL-GIRQYKLIEWVYQQMSDEGYAPDIL-----TYNIVMCAKYRLGKLDQF 99 (300)
Q Consensus 29 a~~~~~~~~-~~~~~~~~~--~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a 99 (300)
|+..++... ....+|... ++-.+...+. ...+++.|+..+++.....-+++.. ....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 445555544 344444433 5666677665 7788999999999775543222222 1234456666666555 8
Q ss_pred HHHHHHHHhCC----CCCCHhHHHHH-HHHHhcCCChHHHHHHHHHHHHcC---CCCcHhhHHHHHHHHH--hCCCHHHH
Q 043969 100 HRLLDEMGRSG----FSPDFHTYNIL-LHVLGKGDKPLAALNLLNHMKEVG---FDPSVLHFTTLMDGLS--RAGNLDAC 169 (300)
Q Consensus 100 ~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a 169 (300)
.+.+++..+.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|...++-.++.+.. ..+..+.+
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 88887764431 11222333333 333333479999999998886542 2344445555555543 45556677
Q ss_pred HHHHHHHHhCC---------CCCccccHHHHHHHHH--hcCCHHHHHHHHHHH
Q 043969 170 KYFFDEMANKG---------CMPDVVCYTVMITSYI--AAGELEKAQDLFDGM 211 (300)
Q Consensus 170 ~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~ 211 (300)
.+..+.+.... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77776663321 1334556777766554 577777776666554
No 350
>PRK09687 putative lyase; Provisional
Probab=83.39 E-value=20 Score=28.26 Aligned_cols=233 Identities=10% Similarity=-0.053 Sum_probs=137.0
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcH----HHHHHHHHHhhhCCCCCCHhhHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY----KLIEWVYQQMSDEGYAPDILTYN 84 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 84 (300)
|..+....+..+...|. .++...+..+.. .+|...-...+.++...|.. +++...+..+... .|+..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 33344444455555443 334444444332 33444445556666666653 4566667666443 34555555
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 043969 85 IVMCAKYRLGK-----LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159 (300)
Q Consensus 85 ~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (300)
..+.++...+. ...+...+..... .++..+-...+.++.+.++ +.++..+-.+.+. ++.......+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 55555554432 1233344433333 3466677777888888876 4566666666653 455566666667
Q ss_pred HHhCC-CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 043969 160 LSRAG-NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE 238 (300)
Q Consensus 160 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (300)
+.+.+ +...+...+..+.. .++...-...+.++.+.++. .|...+-+..+.+ + .....+.++...|+. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 77653 24456666666654 35777778888888888884 5666666665543 2 234678888888885 6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043969 239 ACTMMKEMESRGCNPNFLVYNTLVSNLR 266 (300)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (300)
|...+..+.+. .||..+-...+.++.
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888888764 357766666666554
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.21 E-value=35 Score=30.77 Aligned_cols=126 Identities=11% Similarity=0.119 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCcc--ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 043969 163 AGNLDACKYFFDEMANKG-CMPDV--VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239 (300)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (300)
..+.+.|...+....... ..+.. ..+..+.......+..++|...+....... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345566777776653332 21111 122333322233322455555555443221 2444455556666688999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHH
Q 043969 240 CTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLV 291 (300)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~l~ 291 (300)
...+..|.... .-...-.--+.+++...|+.++|...|+++.....|-..+
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~L 382 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMV 382 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHH
Confidence 88888876532 2233334446677777899999999999987655554443
No 352
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.48 E-value=25 Score=28.58 Aligned_cols=192 Identities=13% Similarity=0.054 Sum_probs=100.4
Q ss_pred HHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCC---C-CCCHhhHHHHHHHHH
Q 043969 16 LICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEG---Y-APDILTYNIVMCAKY 91 (300)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~l~~~~~ 91 (300)
...+.-+.|+|+...+........ .++...|.++... +.++++++...++.+.+.- . ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 345667788998866666555432 3445555555443 7888888888887776531 0 011222222222222
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc-----CCChHH---HHHHHHHHHH--cCCCCcHhhHHHHHHHHH
Q 043969 92 RLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK-----GDKPLA---ALNLLNHMKE--VGFDPSVLHFTTLMDGLS 161 (300)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~---a~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 161 (300)
+...+.+..++.+-..... .+......++..+.. .++++. .+.+-..+.. ........++..++..+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 3222333332222221110 001111222221111 111111 1111111111 112334567888889999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCC---ccccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 162 RAGNLDACKYFFDEMANKGCMP---DVVCYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
+.|.++.|...+..+...+... .+.....-+......|+..+|+..++...+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999998887653222 334445556667788899999998888776
No 353
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=82.05 E-value=17 Score=26.43 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=12.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 043969 227 IRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3455666666666666665554
No 354
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=81.32 E-value=6.6 Score=21.23 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=16.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043969 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLV 262 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (300)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555555444
No 355
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=81.00 E-value=26 Score=27.87 Aligned_cols=175 Identities=13% Similarity=0.190 Sum_probs=75.5
Q ss_pred CcCHHHHHHHHH-HHHccCc-HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 043969 42 RPFKNSYNAILH-ALLGIRQ-YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYN 119 (300)
Q Consensus 42 ~~~~~~~~~l~~-~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (300)
.|+..+++.|.. .+.+.|- ..-|.++|+..... ...+.+++++.+.+.-+..+++| ||+-.+-.
T Consensus 162 t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E 227 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVE 227 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHH
Confidence 455555665554 3344443 34566777776644 22355666665544433333332 55555555
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHH-HHHHhCCCCCccccHHHHHHHHHhc
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFF-DEMANKGCMPDVVCYTVMITSYIAA 198 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~ 198 (300)
.....+...|--+-..-.-.++.. | .-...-..|.+-..+...+++..... ++|.+.+ -|+......+-++....
T Consensus 228 ~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsa 303 (412)
T KOG2297|consen 228 HFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSA 303 (412)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHH
Confidence 555544444422211111111100 0 00011122233333344445544444 3444444 34544332222222233
Q ss_pred CCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 043969 199 GELEKAQDLFDG-MITKGQLPNVFTYNSMIRGFCMAGKFDEA 239 (300)
Q Consensus 199 ~~~~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (300)
..|.+-.++..+ ..+ ...+|..|+.+++..|+.+..
T Consensus 304 veWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 304 VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHH
Confidence 333332222221 111 345677788888888876544
No 356
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=80.99 E-value=11 Score=23.51 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=32.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043969 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274 (300)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 274 (300)
+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|..++.++.+.|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 34455555555543 33333333332234466666666666665 32 23455666666666655444
No 357
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.66 E-value=49 Score=30.83 Aligned_cols=166 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHH---cCCCCcHhhHHHHHHHHHhCCCH--HHHHHHHHHHHhCCCCCccccHHH--
Q 043969 118 YNILLHVLGKGDKPLAALNLLNHMKE---VGFDPSVLHFTTLMDGLSRAGNL--DACKYFFDEMANKGCMPDVVCYTV-- 190 (300)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 190 (300)
|..|+..|...|..++|+++|.+..+ ..-..-...+..+++.+.+.+.. +-.++.-+...+.........+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----------------HHHHHHHH
Q 043969 191 ----------MITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK-----------------FDEACTMM 243 (300)
Q Consensus 191 ----------li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 243 (300)
-+-.|......+-+..+++.+....-.++....+.++..|++.=+ .+......
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Q ss_pred HHHHHCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 244 KEMESRGCN------PNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 244 ~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
+.-...... |....|....-.+.+.|+.++|+.++-..++
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.45 E-value=6.9 Score=23.84 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=26.0
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHH
Q 043969 57 GIRQYKLIEWVYQQMSDEGYAPD--ILTYNIVMCAKYRLGKLDQFHRL 102 (300)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 102 (300)
..++.++|+..|....+.-..|. -.++..++.+++..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665533321 12344555666667766666554
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.30 E-value=8 Score=33.56 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=67.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043969 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAE 273 (300)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 273 (300)
.+...|+...|...+.........-.......|.+...+.|....|..++....... ...+.++-.+.+++....+++.
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHH
Confidence 344568888888888877655333233445566777777788888988888777654 3455677788889999999999
Q ss_pred HHHHHHHHHHcC
Q 043969 274 AHEVIRHMVEKG 285 (300)
Q Consensus 274 a~~~~~~~~~~~ 285 (300)
|++.|++..+..
T Consensus 695 a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 695 ALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhcC
Confidence 999999998876
No 360
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.97 E-value=23 Score=28.69 Aligned_cols=89 Identities=9% Similarity=-0.022 Sum_probs=54.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHH
Q 043969 123 HVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202 (300)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (300)
+-|.+.|.+++|+..|..-.... +.+..++..-..+|.+...+..|+.=-......+ ..-...|+.-..+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 45888999999999998877652 3377888888888999888887766555554431 001222333333333344455
Q ss_pred HHHHHHHHHHH
Q 043969 203 KAQDLFDGMIT 213 (300)
Q Consensus 203 ~a~~~~~~~~~ 213 (300)
+|.+=++...+
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55554444444
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.88 E-value=13 Score=27.40 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=35.0
Q ss_pred HhCCCHHHHHHHHHHHHh-CCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 161 SRAGNLDACKYFFDEMAN-KGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
....+.+......+...+ ....|+..+|..++.++...|+.++|.+...++...
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355555544444444332 133677888888888888888888888887777664
No 362
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.31 E-value=41 Score=29.05 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=115.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 043969 78 PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157 (300)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (300)
.|....-+++..+..+..+.-+..+..+|...| .+-..+-.++.+|... ..+.-..+|+++.+..+. |+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 356667777888888878888888888887765 4667778888888877 567778888888776433 333333444
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCC-----ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh
Q 043969 158 DGLSRAGNLDACKYFFDEMANKGCMP-----DVVCYTVMITSYIAAGELEKAQDLFDGMITK-GQLPNVFTYNSMIRGFC 231 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 231 (300)
.-| ..++.+.+...|.....+-++. =...|..++.. -..+.+....+..++... |..--...+.-+-.-|.
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 444 4477777887877776542210 12244444432 134566777777766654 44444556666667888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
...++++|++++..+.+.. ..|...-..++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 8888999999888877753 22444555555544
No 363
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.19 E-value=48 Score=29.76 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=34.2
Q ss_pred HHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCc-------HHHHHHHHHHhhhC
Q 043969 16 LICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ-------YKLIEWVYQQMSDE 74 (300)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 74 (300)
+|-.|.|.|+.++|.++....... .......+...+..+....+ -+....-|++..+.
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 566778889999999988554432 23334466777777766432 23445555555544
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.85 E-value=4.7 Score=18.24 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 258 YNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 258 ~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
+..+...+...|+++.|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555555555555555544
No 365
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.41 E-value=5.6 Score=31.31 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043969 218 PNVFT-YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYN 259 (300)
Q Consensus 218 p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (300)
|+..+ |+..|....+.||+++|+.++++....|+.--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 44444 4677888888888888888888888877654444443
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.30 E-value=31 Score=27.19 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 043969 260 TLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 260 ~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
.++..+.+.|.+.+|+.+.+.+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 45666777888888777665544
No 367
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.29 E-value=7.9 Score=22.33 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=9.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 043969 225 SMIRGFCMAGKFDEACTMMKEM 246 (300)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~ 246 (300)
.+|.++...|++++|.+.++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.19 E-value=40 Score=28.30 Aligned_cols=196 Identities=13% Similarity=-0.012 Sum_probs=92.6
Q ss_pred cCCCCCchHH--HHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHH--HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC
Q 043969 3 ENGFPTTART--FNILICTCGEVGLARKVVERFIKSKLFNFRPFKN--SYNAILHALLGIRQYKLIEWVYQQMSDEGYAP 78 (300)
Q Consensus 3 ~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (300)
+.|..|+... ..+.+..++..|+.+-+.-++ ..|..|+.. .....+...+..|+.+.+..+++.-.......
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 98 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLM----KHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVF 98 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccc
Confidence 4566665433 334455566677765443333 334444432 12334556667788777665554321110011
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH--HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc---HhhH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT--YNILLHVLGKGDKPLAALNLLNHMKEVGFDPS---VLHF 153 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 153 (300)
+..-. ..+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+.. +.+.|..++ ....
T Consensus 99 ~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----Ll~~g~~~~~~d~~g~ 169 (413)
T PHA02875 99 YKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----LIDHKACLDIEDCCGC 169 (413)
T ss_pred cCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhcCCCCCCCCCCCC
Confidence 11112 2333445566654 4444555565554321 1223344455676654433 344444332 2222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcccc---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC---YTVMITSYIAAGELEKAQDLFDGMITKGQLPNV 220 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 220 (300)
+.+ ...+..|+.+- .+.+.+.|..++... ....+...+..|+.+- .+-+.+.|..++.
T Consensus 170 TpL-~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n~ 230 (413)
T PHA02875 170 TPL-IIAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCNI 230 (413)
T ss_pred CHH-HHHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcch
Confidence 333 33445566554 344555665554332 2244544456676654 4445567777664
No 369
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=77.60 E-value=34 Score=27.22 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=43.7
Q ss_pred cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHH
Q 043969 149 SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK-----GQLPNVFTY 223 (300)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~ 223 (300)
....-..-+......|++..|.++..+..+.- . +..-|+.+=..- .++++-.....++.+. -..-|+..|
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y 200 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKY 200 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 44445556667777888888888877765430 0 111111111111 1222222222222221 012467778
Q ss_pred HHHHHHHhccCCHHHHH
Q 043969 224 NSMIRGFCMAGKFDEAC 240 (300)
Q Consensus 224 ~~l~~~~~~~~~~~~a~ 240 (300)
..+..+|.-.|+...+.
T Consensus 201 ~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 201 SKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 88888887777665544
No 370
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=77.38 E-value=16 Score=25.48 Aligned_cols=58 Identities=21% Similarity=0.132 Sum_probs=31.0
Q ss_pred hhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 36 SKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
++..|.+++.. -..++..+.+.++.-.|.++++.+.+.++..+..|....+..+...|
T Consensus 12 lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 12 LKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444332 23455556666566677777777776665555554444444444444
No 371
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=77.22 E-value=29 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043969 191 MITSYIAAGELEKAQDLFDGMI 212 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~ 212 (300)
-|......|+.++|++....+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3445556666666666665543
No 372
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=76.29 E-value=20 Score=25.05 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 174 DEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 174 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
+.+.+.|++++. --..++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444444332 223344444445444556666666655554444444444445444444
No 373
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.26 E-value=31 Score=26.06 Aligned_cols=177 Identities=16% Similarity=0.126 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHH
Q 043969 61 YKLIEWVYQQMSDEGYAPD-ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLN 139 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (300)
+..|.--|.+.... .|+ +.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+-
T Consensus 81 ~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 33444444444443 343 5678888888889999999999999998764211111222222 3344688888887776
Q ss_pred HHHHcC-CCCcHhhHHHHHHHHHhCCCHHHHHHHHH-HHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043969 140 HMKEVG-FDPSVLHFTTLMDGLSRAGNLDACKYFFD-EMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217 (300)
Q Consensus 140 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (300)
..-+.. -.|-...|--+. -..-++.+|..-+. +... .|..-|...|-.+.- |+.. ...+++++... ..
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~ 227 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-AT 227 (297)
T ss_pred HHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-cc
Confidence 665542 122222222222 23445666665443 3332 255556554433221 1111 12233333322 11
Q ss_pred CC-------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043969 218 PN-------VFTYNSMIRGFCMAGKFDEACTMMKEMESRG 250 (300)
Q Consensus 218 p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (300)
-+ ..||--+..-+...|+.++|..+|+-.+..+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 11 3577778888999999999999999888654
No 374
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.00 E-value=28 Score=25.40 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCCCC--HhHHH-----HHHHHHhcCCChHHHHHHHHHHHH
Q 043969 96 LDQFHRLLDEMGRSGFSPD--FHTYN-----ILLHVLGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~--~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~ 143 (300)
++.|+.+|+.+.+.--.|. ..... ..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4667777777765532221 11122 223357777777777777777765
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.78 E-value=37 Score=26.79 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH-------HHHHHHHHhcCCChHHHHHHH
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT-------YNILLHVLGKGDKPLAALNLL 138 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~ 138 (300)
+.+-..+.+++++|+..+.++...|+..+..+ ...+...|...|+....-+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34445667778888888888877777666443 334455566666655544443
No 376
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=75.35 E-value=8.8 Score=30.27 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=14.9
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCCCC
Q 043969 49 NAILHALLGIRQYKLIEWVYQQMSDEGYA 77 (300)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (300)
+..|....+.|++++|+.++++..+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45555555555555555555555555443
No 377
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.10 E-value=21 Score=23.46 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=23.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
-|..++..|...|.+++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888889999999999988876
No 378
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.95 E-value=33 Score=25.81 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccCCH-------HHHHHHHHHHHHCCCCC----CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 222 TYNSMIRGFCMAGKF-------DEACTMMKEMESRGCNP----NFLVYN-TLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~----~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+..+...|-..|+. ..|.+.|.+..+..-.| +..+.. .+.....+.|+.++|.+.|.+++..+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344455555555553 34555555555432221 222222 33345577788888888888888766
No 379
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.81 E-value=40 Score=26.67 Aligned_cols=100 Identities=10% Similarity=0.094 Sum_probs=61.4
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH--
Q 043969 184 DVVCYTVMITSYIAAGELEKAQDLFDGMITK----GQLPNVFT-YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL-- 256 (300)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 256 (300)
....+..+...|++.++.+.+.+...+..+. |.+.|... -..|.-.|....-.++-++..+.|.+.|-..+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 4566778888899999888888777665543 55555432 2233334444445677788888888887654432
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 257 --VYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 257 --~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+|..+. +....++.+|-.++.+....-
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhccc
Confidence 333322 234456777777776666543
No 380
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.74 E-value=36 Score=26.06 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=31.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 191 MITSYIAAGELEKAQDLFDGMITKGQLPNVFTY-------NSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
+...-+..+++.+|+++|++........+..-| ...+.. .-..|.-.+...+++..+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh-l~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH-LCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHh-HhcccHHHHHHHHHHHHhc
Confidence 334445678888888888887665443232222 222222 2224555556666666654
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.20 E-value=42 Score=26.62 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHH-------HH-------------------cCCCCc
Q 043969 96 LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHM-------KE-------------------VGFDPS 149 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~-------------------~~~~~~ 149 (300)
..+|+++|.-+....- ...+-..++..+-...+..+|...+... .. .++.-|
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 3578888888766531 2344455666666666666665554322 11 012334
Q ss_pred HhhHHHHHHHHHhC-CCHHHHHHHHHHHHhCCCCCc-----------------cccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 150 VLHFTTLMDGLSRA-GNLDACKYFFDEMANKGCMPD-----------------VVCYTVMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 150 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (300)
..-|...+...... -.++++.++....... .-|+ ..+++.....|..+|.+.+|.++-++.
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44455555443322 2345555555544322 1111 123455567888999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 043969 212 ITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES-----RGCNPNFLVY 258 (300)
Q Consensus 212 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 258 (300)
.... +.+...+-.++..+...||--.|.+-++++.+ .|+..+...+
T Consensus 306 ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 306 LTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred hhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 8763 34778888999999999998777777776653 4776665544
No 382
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=73.63 E-value=59 Score=29.16 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCC--CCCccccHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 043969 155 TLMDGLSRAGNLDACKYFFDEMANKG--CMPDVVCYTVMITSYIAAGELE------KAQDLFDGMITKGQLPNVFTYNSM 226 (300)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~p~~~~~~~l 226 (300)
+++.+|...|++..+..+++.+...+ -+.-...||..|+.+.+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 66777777777777777777765431 1222334666666666666543 2333333333 33466666666
Q ss_pred HHHHhc
Q 043969 227 IRGFCM 232 (300)
Q Consensus 227 ~~~~~~ 232 (300)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 383
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=73.61 E-value=31 Score=27.47 Aligned_cols=73 Identities=8% Similarity=0.146 Sum_probs=51.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 043969 205 QDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRN----------AGKLAEA 274 (300)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a 274 (300)
.++|+.+.+.++.|.-.+|.-+.-.+.+.-.+.+.+.+|+.+... ..-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567788888888888888888877888888888889999888763 2235555555532 4677666
Q ss_pred HHHHHHHH
Q 043969 275 HEVIRHMV 282 (300)
Q Consensus 275 ~~~~~~~~ 282 (300)
.++++.-.
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
Confidence 66665543
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.21 E-value=70 Score=28.71 Aligned_cols=163 Identities=11% Similarity=0.035 Sum_probs=94.7
Q ss_pred HHHHHHHhh-ccccHHHHHHHHHHhhhcCCCcCHH-----HHHHHHHHHHccCcHHHHHHHHHHhhhCC----CCCCHhh
Q 043969 13 FNILICTCG-EVGLARKVVERFIKSKLFNFRPFKN-----SYNAILHALLGIRQYKLIEWVYQQMSDEG----YAPDILT 82 (300)
Q Consensus 13 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 82 (300)
+-.+...+. ...+.+.|...+.+.....-.++.. .-..++..+.+.+... |...+++.++.- ..+-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 344445444 5778999999999865443233322 2345566666666655 888888876642 1122233
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhHHHHHHHHH--hcCCChHHHHHHHHHHHHcC---------CC
Q 043969 83 YNIV-MCAKYRLGKLDQFHRLLDEMGRSG---FSPDFHTYNILLHVL--GKGDKPLAALNLLNHMKEVG---------FD 147 (300)
Q Consensus 83 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~---------~~ 147 (300)
|..+ +..+...++...|.+.++.+...- ..|...++-.++.+. .+.+.++++.+.++.+.... ..
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 3333 223333479999999998875432 233444444555443 34566777878777764321 13
Q ss_pred CcHhhHHHHHHHH--HhCCCHHHHHHHHHHH
Q 043969 148 PSVLHFTTLMDGL--SRAGNLDACKYFFDEM 176 (300)
Q Consensus 148 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 176 (300)
|...+|..+++.+ ...|+++.+...++++
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456666666654 4577766766665555
No 385
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=72.47 E-value=41 Score=30.04 Aligned_cols=47 Identities=11% Similarity=0.008 Sum_probs=24.1
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhcC--CCcCHHHHHHHHHHHHccCcH
Q 043969 15 ILICTCGEVGLARKVVERFIKSKLFN--FRPFKNSYNAILHALLGIRQY 61 (300)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 61 (300)
+|+.+|...|++..+.++++.....+ -+.-...||..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 45566666666666666655544322 111222455555555555554
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.20 E-value=84 Score=29.19 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=122.4
Q ss_pred HccCcHHHHHHHHHHhhhCCCCCCHh-------hHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCCHhHHHHHHH
Q 043969 56 LGIRQYKLIEWVYQQMSDEGYAPDIL-------TYNIVM-CAKYRLGKLDQFHRLLDEMGRS----GFSPDFHTYNILLH 123 (300)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 123 (300)
....++.+|..++.++...-..|+.. .++.+- ......|+++++.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999888876543222221 233332 2334578899998888776543 12234556667777
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHhhHH---HH--HHHHHhCCCHH--HHHHHHHHHHhC---CCC---CccccHHH
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFT---TL--MDGLSRAGNLD--ACKYFFDEMANK---GCM---PDVVCYTV 190 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~~~~~--~a~~~~~~~~~~---~~~---~~~~~~~~ 190 (300)
+..-.|++++|..+..+..+..-..+...+. .+ ...+...|+.. .....|...... ..+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7888899999999988776642233333332 22 23345566332 222333333221 001 11223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHHHHCCC----CCCHHHHHH
Q 043969 191 MITSYIAAGELEKAQDLFDGMI----TKGQLPNVFTY--NSMIRGFCMAGKFDEACTMMKEMESRGC----NPNFLVYNT 260 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~----~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 260 (300)
+..++.+ .+.+..-...-. .....|-.... ..|+......|+.++|...++++..... .++..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 333333222222 22222222222 3678888899999999999999886432 233333333
Q ss_pred HHHH--HHhcCCHHHHHHHHHHH
Q 043969 261 LVSN--LRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 261 li~~--~~~~g~~~~a~~~~~~~ 281 (300)
.++. ....|+.+.+.....+-
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhc
Confidence 3333 35678888887777663
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.03 E-value=14 Score=20.01 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhH
Q 043969 95 KLDQFHRLLDEMGRSGFSPDFHT 117 (300)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~ 117 (300)
-.+++...++.|.+.|+..+...
T Consensus 17 lI~~~~~~l~~l~~~g~~is~~l 39 (48)
T PF11848_consen 17 LISEVKPLLDRLQQAGFRISPKL 39 (48)
T ss_pred ChhhHHHHHHHHHHcCcccCHHH
Confidence 33333333333333333333333
No 388
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.60 E-value=52 Score=26.56 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhhH---------HHHHHHHHhCC--CHHHHHHHHHHHHhC-CCCCccccHHHHHHHHH
Q 043969 129 DKPLAALNLLNHMKEVGFDPSVLHF---------TTLMDGLSRAG--NLDACKYFFDEMANK-GCMPDVVCYTVMITSYI 196 (300)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~--~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 196 (300)
++.+....++..+.+.+..|=-... ..++....+.+ ++++-.+..+...+. |-.--...+-.....|+
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYyc 115 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYC 115 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4666677777777777654321111 12222222222 233333333333332 22223445667778899
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHh
Q 043969 197 AAGELEKAQDLFDGMITK----GQLPNVFTYNSMIR-GFCMAGKFDEACTMMKEMESRGCNPNFL----VYNTLVSNLRN 267 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~ 267 (300)
+.|+-+.|.+.+.+..++ |.+.|...+..-+. .|....-..+-++..+.+.+.|-..+.. +|..+- +..
T Consensus 116 qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~ms 193 (393)
T KOG0687|consen 116 QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMS 193 (393)
T ss_pred HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHH
Confidence 999999998887765543 66666655443332 3333334555666666667776655433 344332 355
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 043969 268 AGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~ 285 (300)
..++.+|-.+|-+....-
T Consensus 194 vR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHhHHHHHHHHHHHcccc
Confidence 677888888877766543
No 389
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.34 E-value=4.3 Score=27.61 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=11.0
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 64 IEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
|-.+|+.|++.|-+||. |+.|+.
T Consensus 114 aY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 114 AYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred HHHHHHHHHhCCCCCcc--HHHHHH
Confidence 44455555555544432 444443
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.20 E-value=5.7 Score=27.03 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=22.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (300)
+.|.-..|..+|..|.+.|.+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345566688888888888888774 6666654
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.90 E-value=25 Score=22.21 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=10.7
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 043969 265 LRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~ 283 (300)
....|++++|.+.+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4455666666666655543
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.74 E-value=29 Score=22.80 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGR 108 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (300)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444445555555555555544433
No 393
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=69.36 E-value=41 Score=26.84 Aligned_cols=71 Identities=11% Similarity=0.183 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh----------CCCHHHH
Q 043969 100 HRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR----------AGNLDAC 169 (300)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 169 (300)
.++|+.+...++.|.-..+.-+.-.+.+.=.+..++.+|+.+... ..-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356666667777777666666666666666677777777777643 2224444444432 4666666
Q ss_pred HHHHHH
Q 043969 170 KYFFDE 175 (300)
Q Consensus 170 ~~~~~~ 175 (300)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666554
No 394
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.19 E-value=43 Score=25.87 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=38.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 223 YNSMIRGFCMAGKFDEACTMMKEMES----RGC-NPNFLVYNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
-..+..-|...|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+.-++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34566677778888888888877743 122 2344556666677777788777776655554
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.76 E-value=27 Score=22.09 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=32.5
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 196 IAAGELEKAQDLFDGMITK----GQLP----NVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
.+.|++.+|.+.+.+..+. +..+ -....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677777776655554432 2221 122233455566778999999998888875
No 396
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=68.53 E-value=55 Score=26.04 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=63.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCC
Q 043969 50 AILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129 (300)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (300)
.++....+.++.....+.++.+. ....-...+......|++..|++++.+..+.- -...-|+.+=..- .
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHh---H
Confidence 34455555555666666665554 23444556677778899999998887775531 1111111111111 1
Q ss_pred ChHHHHHHHHHHHHc-----CCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043969 130 KPLAALNLLNHMKEV-----GFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM 176 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (300)
++++-....+++.+. -...|+..|..+..+|.-.|+.+.+.+-+...
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222222222222211 12457788999999999998877666444433
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.46 E-value=37 Score=26.21 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITK----G-QLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
.-.+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+.-++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345677788999999999999987532 2 22445566777888888898888777765553
No 398
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=67.58 E-value=27 Score=21.73 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 043969 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (300)
++|+-....|+..|+.+|..+++...-.=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4555555555556666666665555555555555555555543
No 399
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=66.94 E-value=90 Score=27.47 Aligned_cols=184 Identities=9% Similarity=0.002 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
..+|+.-+.--...|+++.+.-+|+...--- ..=...|--.+.-....|+.+-|..++....+--++..+.+.-.-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3377777777788888888888888775321 111233444444444448888777777665544333222222222222
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHHhCCCHHHHHH---HHHHHHhCCCCCccccHHHHHHH-----H
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSV-LHFTTLMDGLSRAGNLDACKY---FFDEMANKGCMPDVVCYTVMITS-----Y 195 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~li~~-----~ 195 (300)
.-..|+.+.|..+++.+.+.- |+. ..-..-+....+.|+.+.+.. ++....... -+......+.-- +
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHH
Confidence 344679999999999988763 433 333334556677788777773 333332221 122222222221 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 196 IAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
.-.++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 3367888999999988876 5567777877777766655
No 400
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.77 E-value=56 Score=25.07 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH---CCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcC
Q 043969 237 DEACTMMKEMES---RGCNPNFLVYNTLVS-----NLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 237 ~~a~~~~~~~~~---~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
++|.+.|++..+ ..++|+..++-.++- .|--.|+.++|.++.++..+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 445555554432 225666555443332 3455799999888887776653
No 401
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.63 E-value=32 Score=22.24 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
.++|..+-+.+...+-. ....--+-+..+.+.|++++|..+.+.+ ..||...|..+-. -+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45566555555544211 1111122233455666666666665544 2456666555433 244555555555555
Q ss_pred HHHCC
Q 043969 246 MESRG 250 (300)
Q Consensus 246 ~~~~~ 250 (300)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55443
No 402
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.07 E-value=27 Score=30.94 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 043969 199 GELEKAQDLFDGMITKGQLPN 219 (300)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~p~ 219 (300)
|++.+|.+.+-.+...+..|.
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk 529 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPK 529 (566)
T ss_dssp ---------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcH
Confidence 444445444444444444343
No 403
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=65.73 E-value=52 Score=24.30 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCC--------------CCccccHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 155 TLMDGLSRAGNLDACKYFFDEMANKGC--------------MPDVVCYTVMITSYIAAGELEKAQDLFDG 210 (300)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 210 (300)
+++..|.+..+|.+++++++.+.+..+ .+.-...|.....+.+.|..|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 455567777777777777777654321 23344566777778888888888888773
No 404
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.61 E-value=24 Score=31.20 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (300)
+.|++.+|.+.+-.+.+.+..|...-...|.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34677777777777776666666554444444
No 405
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.42 E-value=65 Score=24.95 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=38.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+..+-+++...|++-++++-..+.... .+-|...|..=..+.+..-+.++|..-|.+.++..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 344455566666777777666666654 23355555555566666666777777777766665
No 406
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=63.15 E-value=37 Score=21.71 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChH
Q 043969 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKY 287 (300)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (300)
.+...+++..-.+. .....|+..|+.++.+.|.-..|..+-+.+.++|.|
T Consensus 47 ~eq~~qmL~~W~~~--~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~~ 96 (96)
T cd08315 47 REQLYQMLLTWVNK--TGRKASVNTLLDALEAIGLRLAKESIQDELISSGKF 96 (96)
T ss_pred HHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcCCC
Confidence 55666666655553 223466888888888888888888887777777643
No 407
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=61.97 E-value=40 Score=22.03 Aligned_cols=19 Identities=16% Similarity=0.566 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 043969 192 ITSYIAAGELEKAQDLFDG 210 (300)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~ 210 (300)
+..|...++.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444455555544444
No 408
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.94 E-value=60 Score=23.70 Aligned_cols=109 Identities=9% Similarity=0.002 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHH---HHhcCCHH-------HHHHHHHHHHhCCCCCC-HhHHHHHHHHHhcC-
Q 043969 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCA---KYRLGKLD-------QFHRLLDEMGRSGFSPD-FHTYNILLHVLGKG- 128 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~-------~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~- 128 (300)
++.|.+.++.-...+ +.|...++.-..+ +++..... +|+.-|++.... .|+ ..++..+..++...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 344555555544443 2255544433333 33333333 444444444444 354 35566666655443
Q ss_pred ---CC-------hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043969 129 ---DK-------PLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180 (300)
Q Consensus 129 ---~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (300)
.+ +++|...|++..+. .|+...|+.-+.... +|-.+..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 23 34444455555543 688888888877763 3566666666554
No 409
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.79 E-value=34 Score=20.96 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=12.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 262 VSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 262 i~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
++.+.++.-.++|+++++-+.++|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344445555555555555555555
No 410
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.49 E-value=78 Score=24.88 Aligned_cols=203 Identities=11% Similarity=0.069 Sum_probs=118.4
Q ss_pred cCCCCCchHHHHHHHHHh-hccccHHHHHHHHHHhhhcCCCcCHH---HHHHHHHHHHccCcHHHHHHHHHHhhhC---C
Q 043969 3 ENGFPTTARTFNILICTC-GEVGLARKVVERFIKSKLFNFRPFKN---SYNAILHALLGIRQYKLIEWVYQQMSDE---G 75 (300)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 75 (300)
+.|-.||+..=|..-.+- .+..++++|+.-|.+..+........ ....++....+.+++++..+.+.+++.- .
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 345667776655444332 23458899999999877654333333 5567888999999999999988888641 1
Q ss_pred --CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCC-CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCC--
Q 043969 76 --YAPDILTYNIVMCAKYRLGKLDQFHRLLDEM----GRSGF-SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGF-- 146 (300)
Q Consensus 76 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 146 (300)
-.-+..+.|.++.--....+.+-....++.- ....- ..=-.|-..|...|...+++.+..++++++....-
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1234556677776555555554444443322 21110 00011234566777778888888888887754311
Q ss_pred --C-------CcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCccccHHHHHHH-----HHhcCCHHHHHH
Q 043969 147 --D-------PSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG-CMPDVVCYTVMITS-----YIAAGELEKAQD 206 (300)
Q Consensus 147 --~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~-----~~~~~~~~~a~~ 206 (300)
. .-...|..-|.+|....+-.+...+|++..... -.|.+... -+|+- ..+.|++++|-.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 1 113456667788888888888888887764321 22333322 22332 234566776654
No 411
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.23 E-value=1.4e+02 Score=27.44 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHhhhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh----------HHHHHHHHHhcCCChH
Q 043969 66 WVYQQMSDEGYAPD---ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH----------TYNILLHVLGKGDKPL 132 (300)
Q Consensus 66 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~ 132 (300)
..+.+|.++--.|+ ..+...++..|....+++...++.+.+.+. ||.. .|...++-=.+.|+-+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHH
Confidence 44556655433333 334445555666666777777777776653 3211 2222333333456666
Q ss_pred HHHHHHHHHHHc
Q 043969 133 AALNLLNHMKEV 144 (300)
Q Consensus 133 ~a~~~~~~~~~~ 144 (300)
+|+...-.+.+.
T Consensus 261 kAL~~~l~lve~ 272 (1226)
T KOG4279|consen 261 KALNTVLPLVEK 272 (1226)
T ss_pred HHHHHHHHHHHh
Confidence 676666655544
No 412
>PRK09857 putative transposase; Provisional
Probab=60.23 E-value=87 Score=25.01 Aligned_cols=12 Identities=0% Similarity=-0.172 Sum_probs=6.7
Q ss_pred ccHHHHHHHHHH
Q 043969 24 GLARKVVERFIK 35 (300)
Q Consensus 24 ~~~~~a~~~~~~ 35 (300)
++.+.|.+.++.
T Consensus 19 s~~~~a~~fl~~ 30 (292)
T PRK09857 19 RQPETARDFLAF 30 (292)
T ss_pred CCHHHHHHHHHH
Confidence 355556666554
No 413
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=59.94 E-value=1.8e+02 Score=28.54 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=91.2
Q ss_pred HhcCCHHHHHH------HHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHH-------HHcCCCCcHhhHHHHH
Q 043969 91 YRLGKLDQFHR------LLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHM-------KEVGFDPSVLHFTTLM 157 (300)
Q Consensus 91 ~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~ 157 (300)
...|.+.++.+ ++......-.++....|..+...+.+.++.++|+..-... .....+.+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 33455555544 5553322222445667788888888999998888765433 1122222334555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC-----CC-CC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHH
Q 043969 158 DGLSRAGNLDACKYFFDEMANK-----GC-MP-DVVCYTVMITSYIAAGELEKAQDLFDGMITK-----GQ--LPNVFTY 223 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~--~p~~~~~ 223 (300)
-.....++...|...+...... |- .| ...+++.+-..+...++++.|.++.+.+.+. |. -++..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 5555666777777777665432 11 33 3334444444455568888888888887653 21 2356677
Q ss_pred HHHHHHHhccCCHHHHHHHHH
Q 043969 224 NSMIRGFCMAGKFDEACTMMK 244 (300)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~ 244 (300)
..+.+.+...+++..|....+
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHHh
Confidence 888888877787777665443
No 414
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=59.74 E-value=28 Score=22.96 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=21.4
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 52 LHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
+..+...+..-.|.++++.+.+.+..++..|....+..+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333344444455556666655554445554444444444444
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.20 E-value=1.1e+02 Score=25.66 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=24.6
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHh--hHHHHHHHHHh--CCCHHHHHHHHHHHHh
Q 043969 126 GKGDKPLAALNLLNHMKEVGFDPSVL--HFTTLMDGLSR--AGNLDACKYFFDEMAN 178 (300)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~ 178 (300)
...+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455666666666666554 333332 23333333332 3445555555555443
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.01 E-value=42 Score=21.01 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=6.0
Q ss_pred CChHHHHHHHHHHH
Q 043969 129 DKPLAALNLLNHMK 142 (300)
Q Consensus 129 ~~~~~a~~~~~~~~ 142 (300)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.79 E-value=1.1e+02 Score=25.62 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=40.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHh--HHHHHHHHHhc--CCChHHHHHHHHHHHHc
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFH--TYNILLHVLGK--GDKPLAALNLLNHMKEV 144 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 144 (300)
..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999886 555554 44555555543 56788899998887664
No 418
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.67 E-value=48 Score=21.52 Aligned_cols=51 Identities=14% Similarity=0.326 Sum_probs=25.2
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 229 GFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+...|++++|..+.+.+ ..||...|.+|-. .+.|..+.+..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 444555555555554433 2455555544432 34555555555555555554
No 419
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.63 E-value=95 Score=24.95 Aligned_cols=163 Identities=13% Similarity=0.151 Sum_probs=80.0
Q ss_pred CCCCCHhhHHHHHH-HHHhcCC-HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhh
Q 043969 75 GYAPDILTYNIVMC-AKYRLGK-LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLH 152 (300)
Q Consensus 75 ~~~~~~~~~~~l~~-~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (300)
|. |+...++.+.. .+.+.|= ..-|.++|+.....+ ..+.++..+.+.+--+.-+++ +||+..+
T Consensus 161 Gt-~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmef--------fPpnkrs 225 (412)
T KOG2297|consen 161 GT-LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEF--------FPPNKRS 225 (412)
T ss_pred CC-CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHh--------cCCcchh
Confidence 53 34555665553 3334442 334566776654332 245566666554443333332 4666555
Q ss_pred HHHHHHHHHhCC-----------CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043969 153 FTTLMDGLSRAG-----------NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVF 221 (300)
Q Consensus 153 ~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 221 (300)
-......+...| ....+.+-++.... .-..+...+++.....++-.+..--|+..
T Consensus 226 ~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~--------------~q~s~e~p~~evi~~VKee~k~~nlPe~e 291 (412)
T KOG2297|consen 226 VEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQ--------------EQVSEEDPVKEVILYVKEEMKRNNLPETE 291 (412)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhccCCCHHHHHHHHHHHHHhcCCCCce
Confidence 444444444333 33344433333222 22223334556555555444443445654
Q ss_pred ----HHHHHHHHHhccCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043969 222 ----TYNSMIRGFCMAGKFDE-ACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAH 275 (300)
Q Consensus 222 ----~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 275 (300)
.|..++++--...+-+. |.+.++. ..+|..|+.+++..|+.+..+
T Consensus 292 Vi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 292 VIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred EEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 46777766444322211 2233332 346788889999999877543
No 420
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=58.27 E-value=67 Score=23.11 Aligned_cols=63 Identities=11% Similarity=-0.069 Sum_probs=43.0
Q ss_pred HHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 043969 175 EMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE 238 (300)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (300)
.+...|++++..- ..++..+...++.-.|.++++.+.+.+..++..|...-+..+.+.|-+.+
T Consensus 16 ~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 16 LCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3455566654433 34555555566677888899988888877777777777888888876543
No 421
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=58.10 E-value=1e+02 Score=25.14 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=23.0
Q ss_pred HhcCCChHHHHHHHHHHHHc---CCCCcHhhH--HHHHHHHHhCCCHHHHHHHHHHHHh
Q 043969 125 LGKGDKPLAALNLLNHMKEV---GFDPSVLHF--TTLMDGLSRAGNLDACKYFFDEMAN 178 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (300)
..+.++.++|++.++++.+. .-.|+...| ....+.+...|+..++.+.+++..+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33334555555555544332 112233222 2233344445555555555555444
No 422
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.57 E-value=1.1e+02 Score=25.28 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=36.4
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcC
Q 043969 230 FCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS----NLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+.+-++..-|......+.++++..-..||.++-- ..+..+..++|.+..-+|++.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3455666666666666666655444556655532 2345677888888888888887
No 423
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=57.28 E-value=30 Score=22.80 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043969 192 ITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235 (300)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (300)
+..+...+..-.|.++++.+.+.+..++..|....+..+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33333444444566666666655555555555555555555553
No 424
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=56.87 E-value=73 Score=24.59 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (300)
+.|..+++.-... ..++.+...+.-++...|+...+.++++.+..
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 4455555444222 34555555555566666677777777777653
No 425
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.80 E-value=11 Score=30.29 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=47.4
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHhcCCChHHHH
Q 043969 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF-HTYNILLHVLGKGDKPLAAL 135 (300)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 135 (300)
..|.++.|++.|...+... ++....|..-.+.+.+.++...|++=++.....+ ||. .-|-.--.+-...|++++|-
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4456666666666666553 2244444444555666666666665555554432 332 22333333334456666666
Q ss_pred HHHHHHHHcCCCCcH
Q 043969 136 NLLNHMKEVGFDPSV 150 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (300)
+.+....+.++.+..
T Consensus 203 ~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHhccccHHH
Confidence 666666665544433
No 426
>PRK09462 fur ferric uptake regulator; Provisional
Probab=56.36 E-value=66 Score=22.44 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHhCCCCCccccHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 043969 175 EMANKGCMPDVVCYTVMITSYIAA-GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237 (300)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (300)
.+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345556554432 23444444443 456788888888887776667777777777777777543
No 427
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.81 E-value=68 Score=22.43 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=71.3
Q ss_pred HHhhhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhHHHHHHHHHhcCCC-hHHHHHHHHH
Q 043969 69 QQMSDEGYAPDIL--TYNIVMCAKYRLGKLDQFHRLLDEMGRSG-----FSPDFHTYNILLHVLGKGDK-PLAALNLLNH 140 (300)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 140 (300)
..|.+.+..++.. ..|.++.-....+++...+.+++.+.... -..+...|..++.+.++... ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 4445555555443 45777777777788888888877763321 03466789999999877665 4457788899
Q ss_pred HHHcCCCCcHhhHHHHHHHHHhCCCHHHH
Q 043969 141 MKEVGFDPSVLHFTTLMDGLSRAGNLDAC 169 (300)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (300)
+++.+.++++.-|..++.++.+....+..
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 98888899999999999988776554443
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.50 E-value=93 Score=23.90 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=29.3
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHH
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR-LGKLDQFHRLLDEM 106 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 106 (300)
+++.+-+.++++++...++++...+...+..--+.+-.+|-. -|....+.+++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 445555666777777777777666555555555555555432 23334444444444
No 429
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=55.38 E-value=38 Score=19.83 Aligned_cols=45 Identities=9% Similarity=0.000 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAK 90 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (300)
...++.++...++..-.++++..+.++.++|. .+..+|.--++.+
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 33445555555555555555555555555443 2344444333333
No 430
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.14 E-value=1.5e+02 Score=26.32 Aligned_cols=53 Identities=15% Similarity=-0.028 Sum_probs=22.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (300)
..+.|....|..++.+..... ...+-++-.+.+++....++++|++.|++..+
T Consensus 652 ~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 652 LIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 333344444444444433332 22233344444444444455555555554444
No 431
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=55.10 E-value=1.1e+02 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=14.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC
Q 043969 194 SYIAAGELEKAQDLFDGMITKGQ 216 (300)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~ 216 (300)
...++|..+.|..+++-+.+.++
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHc
Confidence 34456777777777777666533
No 432
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=54.98 E-value=1.7e+02 Score=26.81 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=42.1
Q ss_pred HHHHHHHHHH-HhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C----------CCHHHHHHHHHHHhc
Q 043969 167 DACKYFFDEM-ANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ---L----------PNVFTYNSMIRGFCM 232 (300)
Q Consensus 167 ~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~----------p~~~~~~~l~~~~~~ 232 (300)
++....+... ...|+..+......++... .|+...++.+++++...|. . ++......++.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 3444444333 3335555555555555432 5777777777766654321 0 122223334444333
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 043969 233 AGKFDEACTMMKEMESRGCNP 253 (300)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~ 253 (300)
++...++.+++++...|+.+
T Consensus 259 -~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCH
Confidence 55666666666666655543
No 433
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.51 E-value=2.9e+02 Score=29.36 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
..+|-...+.....|+++.|...+-...+.+ -...+-....-+...|+...|+.++++.++..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4678888888888999999988877666654 22344455666788999999999999988654
No 434
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=54.02 E-value=24 Score=23.51 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=19.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 192 ITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
+..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3333344444445555555555544444444444444444443
No 435
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=53.64 E-value=81 Score=22.64 Aligned_cols=35 Identities=20% Similarity=0.523 Sum_probs=25.1
Q ss_pred HhcCCHHHHHHHHHHHHHcChHHHHHHHhhhhhcC
Q 043969 266 RNAGKLAEAHEVIRHMVEKGKYIHLVSKFKRYKRC 300 (300)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~c 300 (300)
...|.+-+|.++++++++...|..+..+|.|..-|
T Consensus 104 is~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc 138 (220)
T PF10858_consen 104 ISEKKYSEAKQLLNKIIENKEYSEISTSYARINWC 138 (220)
T ss_pred HhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777765544
No 436
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=53.05 E-value=2e+02 Score=26.89 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH-hCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHhc
Q 043969 167 DACKYFFDEMA-NKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ-------------LPNVFTYNSMIRGFCM 232 (300)
Q Consensus 167 ~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~p~~~~~~~l~~~~~~ 232 (300)
++....++.+. ..|+..+......++. ...|+...|+.++++....+- .++...+..++.++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 34444444443 2344444444444433 346677777777666443210 0222233344443332
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 043969 233 AGKFDEACTMMKEMESRGCN 252 (300)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~ 252 (300)
++..+++.+++++...|+.
T Consensus 259 -~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLS 277 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCC
Confidence 5556666666666555543
No 437
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=53.01 E-value=1.7e+02 Score=26.09 Aligned_cols=198 Identities=10% Similarity=0.047 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
....+..+++.+.. =+.+...++++++.. . + ...+..++.+....|......-+.+.+....+ ++...-..+..
T Consensus 309 ~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~~~ 382 (574)
T smart00638 309 AAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLLAV 382 (574)
T ss_pred hHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 34467777776543 456667777777654 1 1 56778888888888887666666666655443 33333333333
Q ss_pred HHhcC-CChHHHHHHHHHHHHc-CCCCcH-------hhHHHHHHHHHhCCCH------HHHHHHHHHHHhCCC-CCcccc
Q 043969 124 VLGKG-DKPLAALNLLNHMKEV-GFDPSV-------LHFTTLMDGLSRAGNL------DACKYFFDEMANKGC-MPDVVC 187 (300)
Q Consensus 124 ~~~~~-~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~-~~~~~~ 187 (300)
+.... .--.+.++.+.++.+. ..++.. .++..++.-++..... +.....+........ .-+..-
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 383 LPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 33222 2233444444444443 334343 2334444434433321 233333332221110 112223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA--GKFDEACTMMKEMES 248 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~ 248 (300)
-...|.++++.|.......+-.-+ ......+...-...+.++.+. ...+++..++-....
T Consensus 463 ~~~~LkaLGN~g~~~~i~~l~~~l-~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~ 524 (574)
T smart00638 463 IQLYLKALGNAGHPSSIKVLEPYL-EGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL 524 (574)
T ss_pred eeeHHHhhhccCChhHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc
Confidence 345567777777755443333333 222223344444555555433 355556655544443
No 438
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.76 E-value=1.6e+02 Score=25.64 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=70.9
Q ss_pred CCCccccH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHHHH-CCCCCCHH
Q 043969 181 CMPDVVCY-TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC--MAGKFDEACTMMKEMES-RGCNPNFL 256 (300)
Q Consensus 181 ~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~ 256 (300)
..|+..++ +.++..+.+.|-..+|...+..+... .+|+...|..+|+.=. .+-+..-+..+++.+.. .| .++.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChH
Confidence 35566555 45777778888899999999998877 5677888877776432 22346677788888875 45 5667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 257 VYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 257 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
.|.-.+.-=...|..+.+-.++.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777666655677888888777777654
No 439
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.74 E-value=1.9e+02 Score=26.66 Aligned_cols=71 Identities=10% Similarity=-0.077 Sum_probs=38.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC---CHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHH
Q 043969 91 YRLGKLDQFHRLLDEMGRSGFSP---DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (300)
.+.+.+++|+...+..... .| ........+..+...|++++|-...-.|... +..-|...+..+...++..
T Consensus 367 l~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 3455666666666554332 23 2345566666677777777776666666532 3444444444444444433
No 440
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=52.58 E-value=29 Score=23.14 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=22.0
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 50 AILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445556666666666555555554444444444443
No 441
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.32 E-value=40 Score=18.72 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=11.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
-++.+.|++++|.+..+.+.+.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhh
Confidence 3455555555555555555554
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.02 E-value=1.1e+02 Score=23.57 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=63.0
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHH
Q 043969 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK-G-----------QLPNVFTYNSMI 227 (300)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-----------~~p~~~~~~~l~ 227 (300)
|.+..+..-..++.+-....++.-+..-...++ +...|+..+|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 455555554445555444444444444444444 35677888877777654332 1 137777778888
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 228 RGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
..|.. +++++|.+++.++-+.|+.|... .+.+.+++
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 87654 68899999999988888876543 34444444
No 443
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.95 E-value=1.3e+02 Score=23.79 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC-----C--CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHh----c
Q 043969 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA-----G--NLDACKYFFDEMANKGCMPDVVCYTVMITSYIA----A 198 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 198 (300)
+..+|..+|++..+.|..+...+...+...|... - +...|...+...-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5555666666655555433211222222222221 1 2235666666655554 22223333333322 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 043969 199 GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG---------------KFDEACTMMKEMESRGCNPNFLVYN 259 (300)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (300)
.+.++|...|....+.|. ......+- .+...| +...|...+......+.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 356666666666666653 22222222 222222 7777888888777776665555555
No 444
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=49.88 E-value=95 Score=24.94 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=38.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHcC
Q 043969 227 IRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLV--SNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+..+...+.++.|+..++.....--.|-...+..|. +.|...|..+.|..+++++.+..
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456677778888888887644332334444444443 45777788888888888777654
No 445
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.64 E-value=1.4e+02 Score=24.03 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
.....++....+.|+.+....+++..... ++...-..++.+.+...+.+...++++.....
T Consensus 170 dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 170 DLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCC
Confidence 33344444445555544433333333332 23444455555555555555555555555553
No 446
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=49.33 E-value=63 Score=22.19 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043969 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCN 252 (300)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (300)
+|....+.++- +...|+++.|+.+.+..+++|..
T Consensus 47 qd~Vl~~~mvW-~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 47 QDDVLMTVMVW-LFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred cCchHHhhHhh-hhcccCHHHHHHHHHHHHHcCCC
Confidence 34433333333 35667777777777777777653
No 447
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=48.63 E-value=2.5e+02 Score=26.84 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=70.8
Q ss_pred CcHhhHHHHHHHHHhCCCHHH-HHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043969 148 PSVLHFTTLMDGLSRAGNLDA-CKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226 (300)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 226 (300)
++...-...+.++...+..+. +...+..+.. .++...-...+.++.+.|..+.+...+..+.+. ++...=...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHH
Confidence 344555555555555554332 2333444433 235556666777777777665554444444443 355555556
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 227 IRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+.++...+. +++...+..+.+ .|+...-...+.++.+.+....+...+..+.+..
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDS 882 (897)
T ss_pred HHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCC
Confidence 677766665 345555555553 4566666677777776533345666666665543
No 448
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.58 E-value=1.4e+02 Score=23.93 Aligned_cols=111 Identities=10% Similarity=0.002 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCC----CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHH
Q 043969 96 LDQFHRLLDEMGRSGF----SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKY 171 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (300)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++.... ..+......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677888888776422 34566667777777888887666666665554 3467778899999999999999999
Q ss_pred HHHHHHhCCCCCccccHHHHHHHHHhcCC--HHHHHHHHHH
Q 043969 172 FFDEMANKGCMPDVVCYTVMITSYIAAGE--LEKAQDLFDG 210 (300)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~ 210 (300)
+++.....+..++.. ...++.++...+. .+.+.+.+..
T Consensus 223 ~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHH
Confidence 999988754222333 4445555543333 3666666654
No 449
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.34 E-value=1e+02 Score=22.21 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=17.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (300)
.++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444455555555555544444444333334444444
No 450
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.33 E-value=1.7e+02 Score=24.70 Aligned_cols=175 Identities=10% Similarity=0.033 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc---------CCCCc
Q 043969 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF--SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV---------GFDPS 149 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 149 (300)
..+.-+...|...|+++.|.+.+.+.+.--. .-....|-.+|....-.|+|.....+..+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4566777888889999999999988654310 112344555666666678887777776666543 12333
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC------CCCccccHHHHHHHHHhcCCHHHHHH-----HHHHHHHCCCCC
Q 043969 150 VLHFTTLMDGLSRAGNLDACKYFFDEMANKG------CMPDVVCYTVMITSYIAAGELEKAQD-----LFDGMITKGQLP 218 (300)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~-----~~~~~~~~~~~p 218 (300)
...+..+..... ++++.|.+.|-...... +.|...+....+.+++-.++-+--+. .|+.+.+.
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----
Confidence 333444433333 35555555543332111 12322233333333333333222212 22223222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 043969 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESR-----GCNPNFLVYNTLVS 263 (300)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~ 263 (300)
.+..+..+..-| .+++...+++++++... -+.|...+.-.+|+
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 333344433333 35778888888877653 23455555444443
No 451
>PRK09462 fur ferric uptake regulator; Provisional
Probab=47.51 E-value=95 Score=21.66 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC
Q 043969 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (300)
..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44555556666555544444444333344444444
No 452
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.25 E-value=1.5e+02 Score=23.99 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=23.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMESRGC 251 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (300)
.+..+...+.+.|..+.|..+++.+.+.++
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 345555556788999999999999998755
No 453
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.86 E-value=93 Score=26.59 Aligned_cols=101 Identities=17% Similarity=0.085 Sum_probs=47.5
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHhhH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc-cccHHHHHHHHHhcCCH
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHF-TTLMDGLSRAGNLDACKYFFDEMANKGCMPD-VVCYTVMITSYIAAGEL 201 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~ 201 (300)
-+.+.+.++.|..++.+.++. .|+...| ..=..++.+.+++..|..=....++.. |+ ...|-.=..++.+.+++
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 344555666666666666654 3433322 222245556666665555554444432 22 12222223334444455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 202 EKAQDLFDGMITKGQLPNVFTYNSMIRGF 230 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (300)
.+|...|+.... +.|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 555555554443 345555555544444
No 454
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.58 E-value=1.8e+02 Score=24.61 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=38.4
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHCCCCCC
Q 043969 188 YTVMITSYIA---AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK-----FDEACTMMKEMESRGCNPN 254 (300)
Q Consensus 188 ~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 254 (300)
...++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++-..|. ..-|...++.....|++--
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~ 304 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEG 304 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHH
Confidence 4444444444 47888899999999888877665444444444433332 2234444555555565433
No 455
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.88 E-value=1e+02 Score=21.44 Aligned_cols=67 Identities=1% Similarity=0.045 Sum_probs=32.0
Q ss_pred CccccHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 183 PDVVCYTVMITSYIAAG---ELEKAQDLFDGMITKGQL-PNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 183 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
++..+--.+..++.+.. +..+.+.++.++.+...+ -......-|.-++.+.++++++.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444444444444433 344555566665542111 11222233444556666666666666666553
No 456
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.71 E-value=59 Score=18.76 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=28.0
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 043969 230 FCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL-----RNAGKLAEAHEVI 278 (300)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~~ 278 (300)
+...|++-+|-++++++=...-.+....+..+|+.. .+.|+...|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345677777777777765432233455566666543 4557777666553
No 457
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.47 E-value=33 Score=15.72 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHH
Q 043969 235 KFDEACTMMKEMES 248 (300)
Q Consensus 235 ~~~~a~~~~~~~~~ 248 (300)
+.+.|..+|+++..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34555555555554
No 458
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=45.30 E-value=2.8e+02 Score=26.49 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCC
Q 043969 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES-RGCNPNFLVYNTLVSNLRNAGK 270 (300)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~ 270 (300)
.+.-.+.|.++.+---.-|..++..-...+...|++..+.+++.++.+ .|-.++...|..++..+...|=
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 344445555544431122555555555566666777777777766665 4455666666666665555553
No 459
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.57 E-value=1.4e+02 Score=22.77 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=58.3
Q ss_pred HHHHHHHH--hcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHH
Q 043969 118 YNILLHVL--GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSY 195 (300)
Q Consensus 118 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (300)
|...+.++ ...++++.|.+.+.+- .+.|+ .-..++.++...|+.+.|..+++...-... +......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-
Confidence 34444443 3346666676665322 12222 223577777778888888888877543211 11222333333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 196 IAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 66788888888777665421 1446666776666443
No 460
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.55 E-value=78 Score=19.81 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
++|+-....|+..|...|..++..+.-.=-.+...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 45555555566666666666666555555555556666655543
No 461
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.38 E-value=18 Score=29.22 Aligned_cols=90 Identities=17% Similarity=0.063 Sum_probs=52.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHHhCCCHHHHH
Q 043969 92 RLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV-LHFTTLMDGLSRAGNLDACK 170 (300)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 170 (300)
..|.++.|++.+....... ++....|..-.+++.+.+.+..|++=+....+. .||. ..|-.--.+-...|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4566777777776666554 344455555566677777777777766666554 2332 22222223344567777777
Q ss_pred HHHHHHHhCCCCCc
Q 043969 171 YFFDEMANKGCMPD 184 (300)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (300)
..+....+.+..+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 77777766655443
No 462
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=44.34 E-value=1.2e+02 Score=30.00 Aligned_cols=145 Identities=15% Similarity=0.161 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043969 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177 (300)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (300)
.|.++.+.++....... ...++.-|.-..+-.-|+-.+.+..-+ .||..|-..||.=-...++|..=. -.
T Consensus 51 ~a~~l~~~~r~~~~~~~---~~~~~~e~~l~~~eg~~lm~laeallr--~pd~~t~d~li~dk~~~~~w~~h~-----~~ 120 (1208)
T PRK11905 51 RARKLVEALRAKRKGTG---VEALLQEYSLSSQEGVALMCLAEALLR--IPDTATRDALIRDKIAPGDWKSHL-----GG 120 (1208)
T ss_pred HHHHHHHHHHcCCCccc---HHHHHHhcCCCcHHHHHHHHHHHHhhc--CCChHHHHHHHHHHhccCChhhhc-----CC
Confidence 34555555554431111 455555555444333333333333322 466666666666655566653200 01
Q ss_pred hCCCCCccccHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043969 178 NKGCMPDVVCYTVMITSYIA-AGELEKAQDLFDGMITKGQLPNVF-----TYNSMIRGFCMAGKFDEACTMMKEMESRGC 251 (300)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (300)
....-.|..||..++.+-.- ..+-......+..+.+..-.|-.. ....+.+-|+--...++|.+..+++.+.|+
T Consensus 121 ~~~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~am~~~~~qFv~Geti~eal~~~~~l~~~G~ 200 (1208)
T PRK11905 121 SKSLFVNAATWGLMLTGKLLSTVNDRGLSAALTRLIARLGEPVIRKAVDMAMRMMGEQFVTGETIEEALKRARELEARGY 200 (1208)
T ss_pred CCcceeeHHHHHHHHhceecCccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHhCeeccCCCHHHHHHHHHHHHhCCC
Confidence 11122344455555543221 111122234444444432222211 123344445555677888888888877766
Q ss_pred C
Q 043969 252 N 252 (300)
Q Consensus 252 ~ 252 (300)
.
T Consensus 201 ~ 201 (1208)
T PRK11905 201 R 201 (1208)
T ss_pred E
Confidence 4
No 463
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.21 E-value=1.1e+02 Score=21.30 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=40.9
Q ss_pred CcCHHHHHHHHHHHHccCc---HHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 42 RPFKNSYNAILHALLGIRQ---YKLIEWVYQQMSDEG-YAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
.++..+--.+..++.+..+ ..+.+.+++.+.+.. +.-......-+.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444444445556666554 455666777777522 2223334444556778888888888888887765
No 464
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.32 E-value=1.6e+02 Score=23.17 Aligned_cols=147 Identities=15% Similarity=0.089 Sum_probs=83.4
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc------
Q 043969 129 DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR----AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA------ 198 (300)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 198 (300)
.+..+|.++|....+.|.+ .....+...|.. ..+..+|...|+..-+.|..+...+...+-..|..-
T Consensus 91 ~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred ccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 3456667777666555432 222234334433 337778888888877776443312233333333322
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 043969 199 -GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCM----AGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAG---- 269 (300)
Q Consensus 199 -~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 269 (300)
.+...|...+.+....+ +......+...|.. ..+.++|...|....+.|. ......+- .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCch
Confidence 13347888888887776 44444445544432 3478888888888888764 22222222 333333
Q ss_pred -----------CHHHHHHHHHHHHHcC
Q 043969 270 -----------KLAEAHEVIRHMVEKG 285 (300)
Q Consensus 270 -----------~~~~a~~~~~~~~~~~ 285 (300)
+...|...+......+
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 7788888888888777
No 465
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.29 E-value=1.4e+02 Score=22.27 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 190 VMITSYIAAGELEKAQDLFDGMITKG--------------QLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~~~~~--------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
+++..|-+..++.+..++++.|.+.. ..+.-...|.....|.++|..+.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45566777778888888888876532 225566778888899999999999998874
No 466
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.25 E-value=2.3e+02 Score=24.89 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=37.0
Q ss_pred CCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 179 KGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ-------------LPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 179 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
.|+..+......++.. ..|+...|..++++....|- .++......++.++.. ++.+.+..++++
T Consensus 194 egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~~~ 270 (509)
T PRK14958 194 ENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCVTR 270 (509)
T ss_pred cCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 3444444343333332 24556666665554433210 1233334445555443 677777777777
Q ss_pred HHHCCCCCC
Q 043969 246 MESRGCNPN 254 (300)
Q Consensus 246 ~~~~~~~~~ 254 (300)
+...|..|.
T Consensus 271 l~~~g~~~~ 279 (509)
T PRK14958 271 LVEQGVDFS 279 (509)
T ss_pred HHHcCCCHH
Confidence 777776654
No 467
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.05 E-value=2.2e+02 Score=24.68 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChH------HHHHHHHHHHHcCCCCcHhhH-
Q 043969 81 LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPL------AALNLLNHMKEVGFDPSVLHF- 153 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~- 153 (300)
.....++.+. +.++.+.|..++..+...|..|....-..+..++-..|.-+ -+..+++...+.|.+-.....
T Consensus 245 ~~i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~ 323 (472)
T PRK14962 245 EVVRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVC 323 (472)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHH
Confidence 3444455443 56889999999999988886665544444444443333222 344445555566665444333
Q ss_pred -HHHHHHHHhCCCHHHHHHHH
Q 043969 154 -TTLMDGLSRAGNLDACKYFF 173 (300)
Q Consensus 154 -~~l~~~~~~~~~~~~a~~~~ 173 (300)
..++..+......+.....+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~ 344 (472)
T PRK14962 324 KLGSASIATRFSSPNVQENDV 344 (472)
T ss_pred HHHHHHHHHhCCChhHHHHHH
Confidence 33344444444444433333
No 468
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=42.90 E-value=2.2e+02 Score=24.47 Aligned_cols=71 Identities=17% Similarity=0.345 Sum_probs=53.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--hHHHHHHHh
Q 043969 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG--KYIHLVSKF 294 (300)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~l~~~~ 294 (300)
...|+.-|...|+..+|...++++--- +-.....+.+++.+..+.|+-...+.+++...+.| +.+.+-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf 584 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhh
Confidence 467888899999999999887765321 12245678999999999999989999999998888 334444433
No 469
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.43 E-value=1.6e+02 Score=22.84 Aligned_cols=117 Identities=8% Similarity=-0.064 Sum_probs=64.4
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHH-HHHHHhcCCHH
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSV-LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVM-ITSYIAAGELE 202 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~ 202 (300)
|.....++.|+.-|.+.+.. .|+. .-|+.=+-++.+..+++.+..--....+ +.|+..--..+ -........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 55556677777766666554 4555 3345556667777777776655444444 35555443333 34445667778
Q ss_pred HHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 203 KAQDLFDGMITK----GQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 203 ~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
+|+..+++..+. .+.|-......|..+=-..-...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888877776432 3333444455555543333334444444443
No 470
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.99 E-value=2.2e+02 Score=24.17 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
.++++.|+.++..|.+.|..|.......++.++-.-
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 467777777777777777666655555444444333
No 471
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.39 E-value=98 Score=26.47 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=60.1
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCcCHHHH-HHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSY-NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGK 95 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (300)
++.+...++++.|.+.+.+..+. .||...| ..-..++.+.+++..|+.=+..+++..+. -...|-.=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 34455567778888888777665 4654433 22335677777777777766666665311 22233333345555566
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 043969 96 LDQFHRLLDEMGRSGFSPDFHTYNILLHVL 125 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (300)
+.+|...|+..... .|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 66777766666544 46655555544433
No 472
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=41.37 E-value=62 Score=19.41 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 233 AGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
.++.+.+.+++++..+.|..|.......+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355566666666666655555544444444443
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.36 E-value=2.2e+02 Score=24.07 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=58.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEG--YAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS---------GFSPDF 115 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 115 (300)
.+.-+...|...|+++.|++.|.+...-- .+..+..|-.+|..-.-.|+|.....+..+..+. .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 67888889999999999999998855431 1223455666666667778888777777666544 123444
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHH
Q 043969 116 HTYNILLHVLGKGDKPLAALNLLN 139 (300)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~ 139 (300)
..+..+.....+ ++..|.+.|-
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHH
Confidence 455555554443 5566555543
No 474
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=41.35 E-value=1e+02 Score=20.15 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 043969 191 MITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~ 211 (300)
++..|...+++++|..-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 334444445555555554444
No 475
>PRK12798 chemotaxis protein; Reviewed
Probab=41.22 E-value=2.2e+02 Score=24.09 Aligned_cols=189 Identities=13% Similarity=0.108 Sum_probs=114.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-HhcCCChHHHHHHHHHHHHcCCCCcH----hhHHHHHHHHHhCCCH
Q 043969 92 RLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV-LGKGDKPLAALNLLNHMKEVGFDPSV----LHFTTLMDGLSRAGNL 166 (300)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 166 (300)
-.|+.+++.+.+..+.....++....+-.|+.+ .....++.+|+++|+...-. -|.+ .....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 478999999999998777777777778777765 45567899999999987653 2332 2334445567888999
Q ss_pred HHHHHHHHHHHhC-CCCCcc-ccHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 043969 167 DACKYFFDEMANK-GCMPDV-VCYTVMITSYIAAGE---LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACT 241 (300)
Q Consensus 167 ~~a~~~~~~~~~~-~~~~~~-~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (300)
+++..+-.....+ .-.|=. ..+..+..+..+..+ .+....++..|.. .--...|..+.+.-.-.|+.+-|..
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~ 278 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARF 278 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8888776666544 111211 122333444444443 2232333333221 1134688888888899999999888
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHH--HHhcCCHHHHHHHHHHHHHcC
Q 043969 242 MMKEMESRGCNPNF-LVYNTLVSN--LRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 242 ~~~~~~~~~~~~~~-~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.-++.....-..+. ..-..|-.+ -.-..+++++.+.+..+....
T Consensus 279 As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 279 ASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 88887765322111 111111111 234466888887777665543
No 476
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.19 E-value=1e+02 Score=20.10 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCc--HHHHHHHHHHhhhCCCC
Q 043969 14 NILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ--YKLIEWVYQQMSDEGYA 77 (300)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 77 (300)
..++..|...++.++|...+.++.... -.......++..+...++ .+.+..++..+.+.+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 345666777789999999888864321 111234445555544422 34455666777766543
No 477
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=40.98 E-value=3e+02 Score=25.56 Aligned_cols=56 Identities=25% Similarity=0.278 Sum_probs=32.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC--H---HHHHHHHHHHHhCCCC
Q 043969 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN--L---DACKYFFDEMANKGCM 182 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~---~~a~~~~~~~~~~~~~ 182 (300)
+.++++.|+.++.+|.+.|..|....-..++.+.-.-|. + ..|...++.....|++
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~p 330 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLP 330 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCc
Confidence 456788888888888888777766555555544434342 2 2233334444445543
No 478
>PRK10941 hypothetical protein; Provisional
Probab=40.58 E-value=1.8e+02 Score=22.93 Aligned_cols=60 Identities=7% Similarity=-0.091 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 119 NILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 445556777777777777777777652 334444444445577777777777766666544
No 479
>PRK09857 putative transposase; Provisional
Probab=40.39 E-value=1.9e+02 Score=23.13 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChH
Q 043969 224 NSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKY 287 (300)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (300)
..++.-..+.++.++..++++.+.+. .+.......++..-+.+.|.-++++++..+|...|.-
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444334455555555555555443 2223333444555555666666666777777766633
No 480
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=40.34 E-value=99 Score=19.79 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043969 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSG 110 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (300)
.+...+++..-.+.. ....+++.|+.++...+.-.-|..+-+.+..+|
T Consensus 47 ~eq~~qmL~~W~~~~--G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKT--GRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 556666665555542 235678888888888888888888877777665
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.74 E-value=1.6e+02 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=18.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 187 CYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
..+.++..+...|+++.|-+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4566666677777777777777766654
No 482
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.54 E-value=2e+02 Score=23.07 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=55.8
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHH----cCCCCcHhhH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccc--
Q 043969 114 DFHTYNILLHVLGKGDKPLAALNLLNHMKE----VGFDPSVLHF-TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV-- 186 (300)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 186 (300)
-...+..+...|++.++.+.+.+++.+..+ .|.+.|.... ..+.-.|....-+++.++..+.+.+.|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345677777888888888888887766544 3444444222 122223444444667777777777776543321
Q ss_pred --cHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 187 --CYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 187 --~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
+|--+. +....++.+|-.++.+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 222222 1234467777777766554
No 483
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.42 E-value=2.6e+02 Score=24.38 Aligned_cols=38 Identities=8% Similarity=0.155 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 043969 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFL 256 (300)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (300)
+...+..++.+....+....|+.++.++.+.|..|...
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 44445555665555555567777777777777665543
No 484
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.05 E-value=4e+02 Score=26.42 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=92.4
Q ss_pred HHHHccCcHHHHHH------HHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH-----HhCCC--CCCHhHHH
Q 043969 53 HALLGIRQYKLIEW------VYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM-----GRSGF--SPDFHTYN 119 (300)
Q Consensus 53 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~--~~~~~~~~ 119 (300)
......|.+.++.+ ++......-.++....|..+...+.+.++.++|+..-... +-.|. +-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 34445556665555 4442222112335667778888888999999988765443 11121 22344566
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHc-----C--CCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-----C--CCCcc
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEV-----G--FDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK-----G--CMPDV 185 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~ 185 (300)
.+.......+....|...+.+.... | .||...+++.+-..+...++.+.|.+..+..... | --++.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666667888888887776543 1 3445555555555555668888888888877543 1 12245
Q ss_pred ccHHHHHHHHHhcCCHHHHHHH
Q 043969 186 VCYTVMITSYIAAGELEKAQDL 207 (300)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~ 207 (300)
.++..+.+.+...+++..|...
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHH
Confidence 5667777766666666665443
No 485
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=39.02 E-value=1.2e+02 Score=20.26 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043969 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC------------------NPNFLVYNTLVSNLRNAGKLAEAHEVIR 279 (300)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 279 (300)
|...+...+...+.-+. ..|..++++|.+.|. .+-...+...+..+...|+++.|.++++
T Consensus 17 ~~~vtl~elA~~l~cS~--Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 17 PVEVTLDELAELLFCSR--RNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred CcceeHHHHHHHhCCCH--HHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555544332 445666666666541 1112344555566677777777777766
No 486
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.69 E-value=1.8e+02 Score=22.25 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=45.8
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC---CHhhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 043969 42 RPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAP---DILTYN--IVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH 116 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (300)
.+...-+|.|+--|.-...+.+|-+.|.. ..|+.| |..+++ .-|......|++++|++....+...-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 34444555555555555555555555533 223332 222222 23445566666666666666654333333332
Q ss_pred HHHHHHH----HHhcCCChHHHHHHHHH
Q 043969 117 TYNILLH----VLGKGDKPLAALNLLNH 140 (300)
Q Consensus 117 ~~~~l~~----~~~~~~~~~~a~~~~~~ 140 (300)
.+-.|.. =..+.|..++|++..+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3222221 13445556666665544
No 487
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.37 E-value=1.2e+02 Score=20.17 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=18.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 043969 87 MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHT 117 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (300)
+.-..++...++|+++++.|.+.| ..+...
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 344556666777777777777766 344433
No 488
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=38.30 E-value=77 Score=21.95 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=18.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 232 MAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (300)
+.|-..+...++++|.+.|+..+...|+.++.
T Consensus 121 ~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 121 SKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 34555556666666666666666666555543
No 489
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.14 E-value=2.3e+02 Score=23.34 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=24.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
-|-.+++.....|.++.++.+|++.+..|-.|-...-..++..+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34555555555555556666666666555555555544444443
No 490
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=37.87 E-value=1.6e+02 Score=21.45 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=16.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 205 QDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
..+.+++...|+ +..+....+..+......+.|..++..
T Consensus 88 ~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~k 126 (174)
T COG2137 88 ARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRK 126 (174)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 334444444442 333444444444444444444444433
No 491
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=37.52 E-value=1.1e+02 Score=19.33 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043969 221 FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVI 278 (300)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 278 (300)
.....+-.-|-+.|-.+.+.+++....+. .-...|...|+.++..++.-.-|..++
T Consensus 33 ~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~--eg~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 33 PAIDNLAYEYDREGLYEQAYQLLRRFIQS--EGKKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hHHHHHHhhcccccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHccchHHHHHHh
Confidence 34455666777788888888888887763 113367788888888888777776654
No 492
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.47 E-value=96 Score=18.85 Aligned_cols=14 Identities=7% Similarity=-0.140 Sum_probs=5.7
Q ss_pred hccccHHHHHHHHH
Q 043969 21 GEVGLARKVVERFI 34 (300)
Q Consensus 21 ~~~~~~~~a~~~~~ 34 (300)
++.|+.+-+..+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444443333333
No 493
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=37.03 E-value=2.3e+02 Score=23.16 Aligned_cols=121 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 26 ARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDE 105 (300)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (300)
..+|..+|+. .....=..|.+..+...--...+.+.++....-...-..+..+..+.|+..+|.+.+++
T Consensus 232 i~~AE~l~k~-----------ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQ-----------ALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred H-HhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH-hhHHHHH
Q 043969 106 M-GRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV-LHFTTLM 157 (300)
Q Consensus 106 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 157 (300)
+ ++..+..-..+...|+.++....-+.++..++.+..+...+.+. ..|++.+
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 494
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=36.95 E-value=1.7e+02 Score=22.20 Aligned_cols=82 Identities=11% Similarity=0.206 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHhccC---------CHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 043969 201 LEKAQDLFDGMITKGQL-------PNVFTYNSMIRGFCMAG---------KFDEACTMMKEMESRGCN-PNFLVYNTLVS 263 (300)
Q Consensus 201 ~~~a~~~~~~~~~~~~~-------p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 263 (300)
.+.|..++..|--..++ -...-|..+..+|.+.| +.+.-.++++..++.|++ .-+..|..+|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 45566665555322111 13455666667776665 345556666666666654 22356777776
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 043969 264 NLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~ 282 (300)
--.-.-+.++..+++..+.
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 5555556777777776654
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=36.88 E-value=2.7e+02 Score=23.83 Aligned_cols=183 Identities=12% Similarity=0.193 Sum_probs=94.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCCHHH-----HHHHHHHHHhCCCCCCHhHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEG--YAPDILTYNIVMCAKYRLGKLDQ-----FHRLLDEMGRSGFSPDFHTYN 119 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~~~~~ 119 (300)
.|+.+...=-+..-.+...++.+.|.... -.|-..-...+|..|++.++.+- -+.+++-+...++ |-..+|+
T Consensus 57 ~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~l-prsd~fN 135 (669)
T KOG3636|consen 57 DWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNL-PRSDEFN 135 (669)
T ss_pred hHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcC-Ccchhhh
Confidence 44444433222223344555555554321 12223345667777887765432 3445555554443 3334444
Q ss_pred HH---HHHHh-----cCCChHHHHHHH---------HHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043969 120 IL---LHVLG-----KGDKPLAALNLL---------NHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM 182 (300)
Q Consensus 120 ~l---~~~~~-----~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (300)
.. ..-|. ..|++-...+++ ..+....+.|+..+.|.+.+.++..-..+-...+|+-..+.+ .
T Consensus 136 ~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-D 214 (669)
T KOG3636|consen 136 VFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-D 214 (669)
T ss_pred hhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-C
Confidence 33 23332 233332223222 122334578898888888888888888888888888887764 3
Q ss_pred CccccHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043969 183 PDVVCYTVMITS--------YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231 (300)
Q Consensus 183 ~~~~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (300)
|-.+.+-.+|-. -.+...-++++++++.|...=-..|..-+-.|..-|+
T Consensus 215 PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 215 PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 333333333221 1223456788888888865422224444445555443
No 496
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.86 E-value=1.8e+02 Score=21.74 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=19.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhC
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDE 74 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (300)
..+.+++.+.-.|+++.|-++|--+++.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4566777777777777777777777665
No 497
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.33 E-value=2.8e+02 Score=23.89 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHH-----------ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 043969 25 LARKVVERFIKSKLFNFRPFKNSYNAILHALL-----------GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRL 93 (300)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (300)
|+++|.+..+.+.. ...+...+...- ....+++-.++++.+.+.|- +| ....-+.+|.+.
T Consensus 29 d~~eav~y~k~~p~------~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHKSIPA------HKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHHhCCc------cccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccC-CC--ccceeeeccccc
Confidence 67777777766532 122333333222 22457788888888888762 23 445567889999
Q ss_pred CCHHHHHHHHHHHHhCC------CCC---CHhHHHHHHHHH-----hcCCChHHHHHHHHHHHHcCCC
Q 043969 94 GKLDQFHRLLDEMGRSG------FSP---DFHTYNILLHVL-----GKGDKPLAALNLLNHMKEVGFD 147 (300)
Q Consensus 94 ~~~~~a~~~~~~~~~~~------~~~---~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~ 147 (300)
+++++|...+++-.+.| .|. ...+...++... .+.|.+ .+..+++.+...|+.
T Consensus 100 n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtp-DarlL~e~~~a~G~~ 166 (480)
T TIGR01503 100 NRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTP-DARLLAEIILAGGFT 166 (480)
T ss_pred ccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCC-cHHHHHHHHHHcCCC
Confidence 99999999998776533 221 123334444432 233333 355666666666653
No 498
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=36.09 E-value=1.8e+02 Score=28.28 Aligned_cols=146 Identities=10% Similarity=0.114 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043969 98 QFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMA 177 (300)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (300)
.|.++.+.++.... .......++.-|.-..+-.-|+-.+.+..-+ .||..|-..||.=-...++|..=. -.
T Consensus 49 ~a~~l~~~~r~~~~--~~~~~~~~~~e~~l~~~eg~~lm~laeallr--~pd~~t~d~li~dk~~~~~w~~h~-----~~ 119 (1038)
T PRK11904 49 RATQLVEAVRAKKK--KLGGIDAFLQEYSLSTEEGIALMCLAEALLR--IPDAATADALIRDKLSGADWKKHL-----GR 119 (1038)
T ss_pred HHHHHHHHHHhcCC--CCcHHHHHHHhcCCCchHHHHHHHHHHHhhc--CCCHHHHHHHHHHhcccCChhhhc-----CC
Confidence 34455555554321 1223444555554443333333333333322 456666666666555555554210 01
Q ss_pred hCCCCCccccHHHHHHHHHhcC-C--HHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 178 NKGCMPDVVCYTVMITSYIAAG-E--LEKAQDLFDGMITKGQLPNVFT-----YNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~~~-~--~~~a~~~~~~~~~~~~~p~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
....-.|..||..++.+-.-.- + -......+..+.+..-.|-... ...+..-|+--...++|.+..+++.+.
T Consensus 120 ~~~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~qFv~Geti~ea~~~~~~l~~~ 199 (1038)
T PRK11904 120 SDSLFVNASTWGLMLTGKVVKLDKKADGTPSGVLKRLVNRLGEPVIRKAMRQAMKIMGKQFVLGRTIEEALKRARSARNK 199 (1038)
T ss_pred CccceeeHHHHHHHHhheecCcccccCCCHHHHHHHHHHhcccHHHHHHHHHHHHHhcCEecCCCCHHHHHHHHHHHHhC
Confidence 1112224445555444322111 0 1112333444443322221111 112333445555677888888888777
Q ss_pred CCC
Q 043969 250 GCN 252 (300)
Q Consensus 250 ~~~ 252 (300)
|+.
T Consensus 200 G~~ 202 (1038)
T PRK11904 200 GYR 202 (1038)
T ss_pred CCE
Confidence 665
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.91 E-value=2.5e+02 Score=23.14 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRG 229 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 229 (300)
|..++......|.++.++.+|++.+..|..|-...-..++..
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 444445555555555555555555555555544444444443
No 500
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.56 E-value=2.9e+02 Score=24.70 Aligned_cols=27 Identities=4% Similarity=0.262 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
|-.++.++...++.+.|.+++..+.+.
T Consensus 211 yf~v~k~vv~LnDa~~a~~L~~kL~~e 237 (926)
T COG5116 211 YFYVIKAVVYLNDAEKAKALIEKLVKE 237 (926)
T ss_pred EEEEeEEEEEeccHHHHHHHHHHHHhh
Confidence 334555556666677777777666544
Done!