Query 043969
Match_columns 300
No_of_seqs 543 out of 1481
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 17:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 7.9E-37 2.7E-41 254.3 24.3 204 64-267 9-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 3.7E-36 1.3E-40 250.2 24.0 205 29-233 9-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.9E-28 6.6E-33 210.5 35.1 238 43-285 303-546 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2.8E-28 9.5E-33 209.5 32.2 273 7-285 302-580 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 9.6E-24 3.3E-28 172.0 34.1 273 7-285 64-369 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.1E-23 7.2E-28 169.9 34.4 251 12-269 137-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.5E-22 5.2E-27 168.0 32.4 200 9-213 25-239 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.2E-21 4.1E-26 162.6 34.1 270 7-285 57-359 (450)
9 3hym_B Cell division cycle pro 99.9 3.8E-21 1.3E-25 152.9 29.8 275 5-285 17-300 (330)
10 3ieg_A DNAJ homolog subfamily 99.9 3.6E-19 1.2E-23 143.0 34.7 271 9-285 36-336 (359)
11 4eqf_A PEX5-related protein; a 99.9 5.1E-21 1.7E-25 154.6 23.5 266 9-280 64-352 (365)
12 3ieg_A DNAJ homolog subfamily 99.9 3.8E-19 1.3E-23 142.8 34.1 270 9-285 2-302 (359)
13 3cv0_A Peroxisome targeting si 99.9 2.2E-20 7.6E-25 148.2 24.9 269 9-283 20-314 (327)
14 1fch_A Peroxisomal targeting s 99.9 2.7E-20 9.3E-25 150.3 25.5 267 10-281 64-356 (368)
15 1fch_A Peroxisomal targeting s 99.9 3E-19 1E-23 144.2 26.8 259 21-284 36-314 (368)
16 2gw1_A Mitochondrial precursor 99.9 3.6E-19 1.2E-23 150.0 27.4 164 116-284 238-401 (514)
17 3hym_B Cell division cycle pro 99.9 8.8E-19 3E-23 139.2 28.0 260 7-272 53-322 (330)
18 2gw1_A Mitochondrial precursor 99.9 3.4E-19 1.2E-23 150.2 26.8 269 10-285 6-368 (514)
19 3mkr_A Coatomer subunit epsilo 99.9 1.2E-18 4.1E-23 135.9 27.2 253 18-285 7-265 (291)
20 4eqf_A PEX5-related protein; a 99.9 3.9E-19 1.3E-23 143.5 25.0 237 44-285 64-311 (365)
21 3spa_A Mtrpol, DNA-directed RN 99.8 2.7E-21 9.2E-26 167.0 10.3 113 151-263 128-244 (1134)
22 3spa_A Mtrpol, DNA-directed RN 99.8 1.3E-20 4.5E-25 162.8 12.7 161 46-211 128-307 (1134)
23 3fp2_A TPR repeat-containing p 99.8 6.8E-18 2.3E-22 143.1 28.6 266 11-285 26-408 (537)
24 3fp2_A TPR repeat-containing p 99.8 3.8E-17 1.3E-21 138.4 32.6 234 7-248 56-406 (537)
25 3mkr_A Coatomer subunit epsilo 99.8 4E-17 1.4E-21 127.3 26.5 248 12-278 36-288 (291)
26 1b89_A Protein (clathrin heavy 99.8 1.6E-19 5.3E-24 144.8 12.8 235 22-297 15-254 (449)
27 3cv0_A Peroxisome targeting si 99.8 1.8E-17 6.2E-22 131.4 24.4 235 45-285 21-270 (327)
28 3uq3_A Heat shock protein STI1 99.8 4.9E-17 1.7E-21 124.5 24.3 224 47-284 7-236 (258)
29 2pl2_A Hypothetical conserved 99.8 3.3E-17 1.1E-21 122.3 21.2 113 164-280 98-210 (217)
30 2pl2_A Hypothetical conserved 99.8 2.3E-17 7.8E-22 123.2 19.9 198 44-247 4-212 (217)
31 3uq3_A Heat shock protein STI1 99.8 8.8E-17 3E-21 123.0 23.6 227 9-249 4-236 (258)
32 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.9E-17 6.4E-22 128.1 18.1 250 19-278 14-269 (275)
33 1ouv_A Conserved hypothetical 99.8 3.1E-15 1.1E-19 115.7 30.4 222 46-285 7-252 (273)
34 1b89_A Protein (clathrin heavy 99.8 4.5E-18 1.5E-22 136.4 13.4 235 8-278 30-266 (449)
35 1ouv_A Conserved hypothetical 99.8 4.8E-15 1.7E-19 114.6 29.2 225 8-250 4-252 (273)
36 2ho1_A Type 4 fimbrial biogene 99.8 1.8E-15 6.2E-20 115.5 25.5 200 46-249 38-238 (252)
37 3u4t_A TPR repeat-containing p 99.8 6.9E-16 2.4E-20 119.1 23.1 234 48-285 6-251 (272)
38 2ho1_A Type 4 fimbrial biogene 99.8 1.6E-15 5.6E-20 115.7 24.9 202 80-285 37-239 (252)
39 2vq2_A PILW, putative fimbrial 99.8 3.1E-15 1.1E-19 111.9 25.9 200 46-248 9-210 (225)
40 2h6f_A Protein farnesyltransfe 99.7 1.7E-15 5.9E-20 122.1 24.7 242 46-294 98-363 (382)
41 2vq2_A PILW, putative fimbrial 99.7 4.3E-15 1.5E-19 111.2 25.4 204 79-285 7-212 (225)
42 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.2E-15 4.2E-20 117.9 23.0 225 55-285 15-245 (275)
43 3u4t_A TPR repeat-containing p 99.7 7.8E-16 2.7E-20 118.9 21.9 249 10-263 3-263 (272)
44 2q7f_A YRRB protein; TPR, prot 99.7 6.7E-16 2.3E-20 117.1 19.8 200 45-249 23-222 (243)
45 2q7f_A YRRB protein; TPR, prot 99.7 5.9E-16 2E-20 117.4 19.2 213 8-226 21-233 (243)
46 2h6f_A Protein farnesyltransfe 99.7 4.6E-15 1.6E-19 119.6 24.2 248 10-266 97-364 (382)
47 2xm6_A Protein corresponding t 99.7 4.9E-13 1.7E-17 112.1 36.9 256 9-285 38-326 (490)
48 2xm6_A Protein corresponding t 99.7 4.4E-13 1.5E-17 112.4 36.1 258 10-285 75-397 (490)
49 3sf4_A G-protein-signaling mod 99.7 1.2E-15 4E-20 124.7 19.0 277 7-284 6-336 (406)
50 4a1s_A PINS, partner of inscut 99.7 4.9E-16 1.7E-20 127.3 16.7 274 11-285 49-373 (411)
51 3ro2_A PINS homolog, G-protein 99.7 9.1E-16 3.1E-20 121.8 15.8 273 11-284 6-332 (338)
52 2ond_A Cleavage stimulation fa 99.7 3.1E-13 1.1E-17 106.4 28.6 184 97-284 81-270 (308)
53 4abn_A Tetratricopeptide repea 99.6 2.5E-14 8.6E-19 119.2 20.1 216 60-281 83-318 (474)
54 4g1t_A Interferon-induced prot 99.6 5.3E-13 1.8E-17 111.3 28.1 273 7-284 48-363 (472)
55 2ond_A Cleavage stimulation fa 99.6 7.1E-13 2.4E-17 104.3 27.1 235 10-249 8-270 (308)
56 3nf1_A KLC 1, kinesin light ch 99.6 3.6E-15 1.2E-19 117.2 13.3 238 45-283 27-306 (311)
57 4abn_A Tetratricopeptide repea 99.6 2.1E-14 7E-19 119.8 18.4 214 26-245 84-317 (474)
58 3vtx_A MAMA; tetratricopeptide 99.6 2.5E-13 8.7E-18 98.4 22.1 163 82-248 7-169 (184)
59 3vtx_A MAMA; tetratricopeptide 99.6 1.8E-13 6.2E-18 99.2 20.6 164 46-213 6-169 (184)
60 2ooe_A Cleavage stimulation fa 99.6 9.3E-12 3.2E-16 105.4 33.2 148 133-284 304-454 (530)
61 3ulq_A Response regulator aspa 99.6 1.6E-13 5.3E-18 111.5 21.1 231 51-284 109-368 (383)
62 3nf1_A KLC 1, kinesin light ch 99.6 1.1E-14 3.6E-19 114.6 13.3 242 7-249 24-307 (311)
63 4g1t_A Interferon-induced prot 99.6 6.1E-13 2.1E-17 110.9 23.8 270 10-285 136-460 (472)
64 1hz4_A MALT regulatory protein 99.6 2.4E-12 8.1E-17 104.1 25.3 271 14-284 18-322 (373)
65 1xi4_A Clathrin heavy chain; a 99.6 6.2E-12 2.1E-16 113.0 29.6 216 47-297 1107-1327(1630)
66 1xi4_A Clathrin heavy chain; a 99.6 6.3E-12 2.2E-16 113.0 28.9 254 9-298 1104-1369(1630)
67 2ooe_A Cleavage stimulation fa 99.6 1.5E-11 5E-16 104.2 30.2 218 63-285 256-493 (530)
68 4a1s_A PINS, partner of inscut 99.6 2.5E-13 8.5E-18 111.2 17.4 237 47-284 50-332 (411)
69 3as5_A MAMA; tetratricopeptide 99.5 3.5E-12 1.2E-16 92.1 20.2 161 13-177 11-171 (186)
70 3ulq_A Response regulator aspa 99.5 1.1E-12 3.9E-17 106.4 19.3 230 16-248 109-367 (383)
71 3ro2_A PINS homolog, G-protein 99.5 5.2E-13 1.8E-17 105.8 16.5 237 47-284 7-292 (338)
72 3sf4_A G-protein-signaling mod 99.5 9.8E-13 3.4E-17 107.2 18.5 242 42-284 6-296 (406)
73 3as5_A MAMA; tetratricopeptide 99.5 3.5E-12 1.2E-16 92.1 19.5 161 47-211 10-170 (186)
74 4gyw_A UDP-N-acetylglucosamine 99.5 2.4E-12 8.2E-17 111.8 19.4 168 7-178 6-173 (723)
75 4i17_A Hypothetical protein; T 99.5 2.4E-11 8.2E-16 91.1 22.1 192 46-249 8-209 (228)
76 3edt_B KLC 2, kinesin light ch 99.5 7.9E-13 2.7E-17 102.2 14.2 228 56-284 12-281 (283)
77 3q15_A PSP28, response regulat 99.5 8.5E-12 2.9E-16 101.0 20.8 231 50-284 106-365 (378)
78 4gyw_A UDP-N-acetylglucosamine 99.5 3.3E-12 1.1E-16 111.0 19.3 165 45-213 9-173 (723)
79 4i17_A Hypothetical protein; T 99.5 1.9E-11 6.6E-16 91.6 19.9 206 8-226 5-220 (228)
80 3edt_B KLC 2, kinesin light ch 99.5 2.1E-12 7.3E-17 99.8 14.9 228 21-249 12-281 (283)
81 3q15_A PSP28, response regulat 99.4 2.3E-11 7.9E-16 98.5 19.5 229 17-248 108-364 (378)
82 1hz4_A MALT regulatory protein 99.4 2.2E-10 7.5E-15 92.5 24.2 237 48-284 17-282 (373)
83 3e4b_A ALGK; tetratricopeptide 99.4 1.3E-10 4.3E-15 96.4 22.3 189 82-286 178-389 (452)
84 1qqe_A Vesicular transport pro 99.4 2.5E-11 8.5E-16 94.7 17.1 195 89-285 46-270 (292)
85 3e4b_A ALGK; tetratricopeptide 99.4 2.3E-10 7.8E-15 94.8 23.2 254 9-285 68-352 (452)
86 3mv2_B Coatomer subunit epsilo 99.3 4.5E-10 1.5E-14 86.6 20.6 241 21-285 24-283 (310)
87 3qky_A Outer membrane assembly 99.3 2E-10 6.7E-15 88.0 18.8 186 44-249 14-224 (261)
88 1qqe_A Vesicular transport pro 99.3 2.2E-10 7.5E-15 89.3 18.7 207 25-248 32-268 (292)
89 3qky_A Outer membrane assembly 99.3 2.5E-10 8.7E-15 87.4 18.6 185 8-214 13-224 (261)
90 2fo7_A Synthetic consensus TPR 99.3 3.6E-10 1.2E-14 76.7 17.4 128 48-178 4-131 (136)
91 2fo7_A Synthetic consensus TPR 99.3 3E-10 1E-14 77.1 16.2 131 11-144 2-132 (136)
92 3rjv_A Putative SEL1 repeat pr 99.3 1.5E-09 5E-14 80.4 21.0 176 63-250 4-198 (212)
93 3mv2_B Coatomer subunit epsilo 99.3 1.5E-09 5.2E-14 83.7 20.4 183 64-255 85-286 (310)
94 3urz_A Uncharacterized protein 99.3 4E-10 1.4E-14 83.2 16.7 57 121-178 60-116 (208)
95 3rjv_A Putative SEL1 repeat pr 99.3 1.6E-09 5.4E-14 80.2 19.7 180 97-288 3-201 (212)
96 3urz_A Uncharacterized protein 99.2 6.8E-10 2.3E-14 82.0 16.5 137 86-228 60-198 (208)
97 2pzi_A Probable serine/threoni 99.2 3.4E-10 1.2E-14 98.5 17.1 173 56-235 402-583 (681)
98 2pzi_A Probable serine/threoni 99.2 2.1E-10 7.3E-15 99.8 15.4 173 21-200 402-583 (681)
99 4ga2_A E3 SUMO-protein ligase 99.2 2.4E-10 8.1E-15 79.7 12.8 145 16-165 3-149 (150)
100 2ifu_A Gamma-SNAP; membrane fu 99.2 1E-09 3.5E-14 86.2 16.9 223 23-276 4-253 (307)
101 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.7E-09 1.3E-13 79.0 19.1 202 12-249 6-213 (225)
102 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.2E-09 1.5E-13 78.7 19.5 183 79-285 3-214 (225)
103 3dra_A Protein farnesyltransfe 99.2 2.4E-08 8.3E-13 77.6 23.9 217 62-283 50-286 (306)
104 3dra_A Protein farnesyltransfe 99.2 5.7E-08 1.9E-12 75.5 25.7 229 21-255 44-292 (306)
105 2r5s_A Uncharacterized protein 99.2 7.9E-10 2.7E-14 79.3 13.7 78 134-212 93-171 (176)
106 2vsy_A XCC0866; transferase, g 99.2 2.1E-09 7.2E-14 91.8 18.1 154 23-180 2-158 (568)
107 3qou_A Protein YBBN; thioredox 99.2 1.5E-09 5.1E-14 84.3 15.6 168 112-283 114-283 (287)
108 2r5s_A Uncharacterized protein 99.2 5.3E-10 1.8E-14 80.2 11.7 160 120-283 11-172 (176)
109 3qou_A Protein YBBN; thioredox 99.2 2.1E-09 7.2E-14 83.5 15.7 165 79-247 116-282 (287)
110 2vsy_A XCC0866; transferase, g 99.1 2.9E-09 9.8E-14 91.0 17.8 155 58-216 2-159 (568)
111 4ga2_A E3 SUMO-protein ligase 99.1 6.5E-10 2.2E-14 77.5 10.5 144 52-199 4-148 (150)
112 2ifu_A Gamma-SNAP; membrane fu 99.1 1.2E-09 4.1E-14 85.8 13.1 200 57-282 3-222 (307)
113 3u3w_A Transcriptional activat 99.1 1.3E-07 4.3E-12 73.6 24.3 163 121-283 81-265 (293)
114 3u3w_A Transcriptional activat 99.1 1.6E-07 5.5E-12 73.1 23.4 164 85-248 80-265 (293)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.2E-08 1.1E-12 73.0 18.4 128 12-145 8-151 (213)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.0 5.4E-08 1.9E-12 71.8 18.4 128 47-179 8-150 (213)
117 2qfc_A PLCR protein; TPR, HTH, 99.0 1.2E-07 3.9E-12 73.9 20.1 167 117-283 77-265 (293)
118 2qfc_A PLCR protein; TPR, HTH, 99.0 2E-07 7E-12 72.5 21.4 166 82-247 77-264 (293)
119 4gco_A Protein STI-1; structur 99.0 2.7E-08 9.3E-13 66.9 13.7 96 47-144 15-110 (126)
120 4e6h_A MRNA 3'-END-processing 99.0 9.4E-08 3.2E-12 82.4 20.2 221 62-285 326-571 (679)
121 1a17_A Serine/threonine protei 99.0 8.3E-08 2.8E-12 67.6 16.1 128 152-282 15-144 (166)
122 3q7a_A Farnesyltransferase alp 99.0 5.5E-07 1.9E-11 70.8 21.8 221 59-284 68-331 (349)
123 3q7a_A Farnesyltransferase alp 99.0 1.3E-06 4.4E-11 68.8 23.9 235 18-258 62-339 (349)
124 1a17_A Serine/threonine protei 98.9 8.6E-08 2.9E-12 67.5 15.5 127 47-176 15-143 (166)
125 3gyz_A Chaperone protein IPGC; 98.9 8.3E-09 2.8E-13 71.7 9.8 96 47-144 38-133 (151)
126 4gco_A Protein STI-1; structur 98.9 3.3E-08 1.1E-12 66.5 12.5 111 10-123 13-123 (126)
127 2c2l_A CHIP, carboxy terminus 98.9 2E-08 6.9E-13 77.7 12.9 194 8-213 2-198 (281)
128 3gw4_A Uncharacterized protein 98.9 2.2E-08 7.5E-13 73.2 12.5 133 151-283 27-175 (203)
129 4e6h_A MRNA 3'-END-processing 98.9 2.2E-07 7.6E-12 80.2 20.1 234 27-265 326-584 (679)
130 3gw4_A Uncharacterized protein 98.9 2.9E-08 1E-12 72.5 13.0 27 80-106 26-52 (203)
131 2e2e_A Formate-dependent nitri 98.9 2.9E-08 1E-12 71.0 12.5 120 57-179 22-144 (177)
132 2c2l_A CHIP, carboxy terminus 98.9 3.4E-08 1.2E-12 76.4 13.6 193 44-248 3-198 (281)
133 1na0_A Designed protein CTPR3; 98.9 1.1E-07 3.7E-12 63.3 14.5 96 47-144 11-106 (125)
134 2lni_A Stress-induced-phosphop 98.9 6.3E-08 2.2E-12 65.4 13.1 116 45-163 16-131 (133)
135 1na0_A Designed protein CTPR3; 98.9 8.5E-08 2.9E-12 63.8 13.5 114 10-126 9-122 (125)
136 2lni_A Stress-induced-phosphop 98.9 1E-07 3.4E-12 64.4 13.9 117 79-198 15-131 (133)
137 2vyi_A SGTA protein; chaperone 98.9 4.2E-08 1.4E-12 66.0 11.9 119 45-166 12-130 (131)
138 3gyz_A Chaperone protein IPGC; 98.9 1.2E-07 4E-12 65.8 14.1 95 152-248 38-132 (151)
139 2vyi_A SGTA protein; chaperone 98.9 8.7E-08 3E-12 64.4 13.3 118 80-200 12-129 (131)
140 2e2e_A Formate-dependent nitri 98.9 2.8E-08 9.7E-13 71.1 11.0 123 20-145 20-145 (177)
141 1p5q_A FKBP52, FK506-binding p 98.9 1.3E-07 4.4E-12 75.1 15.4 131 151-283 148-293 (336)
142 3dss_A Geranylgeranyl transfer 98.9 1.3E-05 4.3E-10 62.8 26.2 232 56-294 40-319 (331)
143 1p5q_A FKBP52, FK506-binding p 98.8 1.9E-07 6.6E-12 74.1 15.1 94 116-211 197-291 (336)
144 4f3v_A ESX-1 secretion system 98.8 3.3E-07 1.1E-11 69.8 15.3 187 22-214 18-237 (282)
145 2vgx_A Chaperone SYCD; alterna 98.8 4.9E-08 1.7E-12 67.7 10.1 95 47-143 23-117 (148)
146 4f3v_A ESX-1 secretion system 98.8 1.6E-07 5.6E-12 71.5 13.5 187 57-249 18-237 (282)
147 2vgx_A Chaperone SYCD; alterna 98.8 9.1E-08 3.1E-12 66.3 11.1 99 79-179 20-118 (148)
148 2fbn_A 70 kDa peptidylprolyl i 98.8 2.3E-08 8E-13 73.0 8.4 145 19-166 13-172 (198)
149 4b4t_Q 26S proteasome regulato 98.7 2.4E-06 8.3E-11 70.1 20.4 164 83-246 58-242 (434)
150 2fbn_A 70 kDa peptidylprolyl i 98.7 3.5E-08 1.2E-12 72.0 8.4 133 151-285 39-187 (198)
151 2xcb_A PCRH, regulatory protei 98.7 1.6E-07 5.4E-12 64.5 11.2 96 47-144 20-115 (142)
152 3upv_A Heat shock protein STI1 98.7 5.2E-07 1.8E-11 60.4 13.5 95 47-143 6-100 (126)
153 4b4t_Q 26S proteasome regulato 98.7 1.7E-06 6E-11 71.0 19.3 167 117-283 57-244 (434)
154 1elw_A TPR1-domain of HOP; HOP 98.7 8.5E-07 2.9E-11 58.2 14.3 96 47-144 6-101 (118)
155 4gcn_A Protein STI-1; structur 98.7 3.2E-07 1.1E-11 61.7 12.1 96 152-248 10-111 (127)
156 1elw_A TPR1-domain of HOP; HOP 98.7 1.2E-06 4.1E-11 57.5 14.6 97 11-109 5-101 (118)
157 2kck_A TPR repeat; tetratricop 98.7 4.2E-07 1.4E-11 59.1 12.2 96 47-144 8-106 (112)
158 3upv_A Heat shock protein STI1 98.7 5.1E-07 1.7E-11 60.5 12.8 99 9-109 3-101 (126)
159 2kck_A TPR repeat; tetratricop 98.7 4.7E-07 1.6E-11 58.9 12.0 97 186-284 7-106 (112)
160 2uy1_A Cleavage stimulation fa 98.7 7.2E-05 2.5E-09 62.5 27.4 82 197-281 298-380 (493)
161 2dba_A Smooth muscle cell asso 98.7 1.5E-06 5.3E-11 59.6 14.9 97 45-144 28-128 (148)
162 2xcb_A PCRH, regulatory protei 98.7 4.3E-07 1.5E-11 62.4 11.6 99 79-179 17-115 (142)
163 4gcn_A Protein STI-1; structur 98.7 5.7E-07 1.9E-11 60.5 11.8 97 47-144 10-112 (127)
164 3q49_B STIP1 homology and U bo 98.7 1.2E-06 4.1E-11 59.5 13.3 100 148-249 7-106 (137)
165 3sz7_A HSC70 cochaperone (SGT) 98.6 1.1E-06 3.8E-11 61.8 13.3 98 45-144 11-108 (164)
166 3q49_B STIP1 homology and U bo 98.6 1.4E-06 4.8E-11 59.1 13.2 94 47-142 11-104 (137)
167 3sz7_A HSC70 cochaperone (SGT) 98.6 8.9E-07 3E-11 62.3 12.4 100 148-249 9-108 (164)
168 2uy1_A Cleavage stimulation fa 98.6 0.0001 3.5E-09 61.6 26.5 202 64-283 198-412 (493)
169 2dba_A Smooth muscle cell asso 98.6 3.7E-06 1.3E-10 57.7 15.2 98 9-109 27-128 (148)
170 1elr_A TPR2A-domain of HOP; HO 98.6 7.4E-07 2.5E-11 59.7 11.0 97 47-144 6-108 (131)
171 1hxi_A PEX5, peroxisome target 98.6 1.1E-06 3.7E-11 58.5 11.5 96 187-284 19-114 (121)
172 1elr_A TPR2A-domain of HOP; HO 98.6 3.4E-07 1.2E-11 61.4 9.2 113 9-124 3-121 (131)
173 3ro3_A PINS homolog, G-protein 98.6 6.2E-07 2.1E-11 62.5 10.8 132 152-283 11-157 (164)
174 3dss_A Geranylgeranyl transfer 98.5 0.00017 5.8E-09 56.5 23.9 219 22-249 41-304 (331)
175 1wao_1 Serine/threonine protei 98.5 1.8E-07 6.3E-12 77.9 6.9 125 12-139 8-134 (477)
176 1hxi_A PEX5, peroxisome target 98.5 1.4E-06 4.8E-11 57.9 9.8 90 51-142 23-112 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2.9E-06 9.8E-11 70.3 13.4 122 152-275 270-405 (457)
178 3ro3_A PINS homolog, G-protein 98.5 1.3E-06 4.6E-11 60.8 9.8 131 118-248 12-157 (164)
179 2xev_A YBGF; tetratricopeptide 98.5 1.4E-05 4.9E-10 53.4 14.5 92 51-144 8-105 (129)
180 2xev_A YBGF; tetratricopeptide 98.5 1.1E-05 3.6E-10 54.0 13.6 91 156-249 8-105 (129)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 4.2E-06 1.4E-10 69.3 12.8 152 22-177 246-413 (457)
182 3k9i_A BH0479 protein; putativ 98.4 8.7E-07 3E-11 58.5 7.0 86 23-109 3-90 (117)
183 1wao_1 Serine/threonine protei 98.4 1.4E-06 4.7E-11 72.6 9.4 124 48-174 9-134 (477)
184 3k9i_A BH0479 protein; putativ 98.4 1.3E-06 4.4E-11 57.7 7.1 61 187-248 29-89 (117)
185 1ihg_A Cyclophilin 40; ppiase 98.4 5.8E-06 2E-10 66.4 12.2 121 48-171 226-362 (370)
186 1ihg_A Cyclophilin 40; ppiase 98.4 7.5E-06 2.6E-10 65.8 12.6 121 83-206 226-362 (370)
187 3rkv_A Putative peptidylprolyl 98.3 1.5E-05 5E-10 55.9 12.4 97 47-144 13-126 (162)
188 1klx_A Cysteine rich protein B 98.3 2.8E-05 9.5E-10 52.9 13.0 112 23-145 8-127 (138)
189 3rkv_A Putative peptidylprolyl 98.3 1.3E-05 4.5E-10 56.1 11.8 103 10-115 11-130 (162)
190 2if4_A ATFKBP42; FKBP-like, al 98.3 4.1E-06 1.4E-10 66.5 9.7 129 47-179 181-328 (338)
191 1klx_A Cysteine rich protein B 98.3 5.1E-05 1.7E-09 51.6 13.9 110 165-285 10-127 (138)
192 3n71_A Histone lysine methyltr 98.3 5.8E-06 2E-10 68.7 10.3 126 159-284 318-464 (490)
193 3n71_A Histone lysine methyltr 98.3 5.9E-06 2E-10 68.7 10.3 125 124-248 318-463 (490)
194 2if4_A ATFKBP42; FKBP-like, al 98.3 4.4E-06 1.5E-10 66.3 9.0 149 115-285 179-329 (338)
195 2hr2_A Hypothetical protein; a 98.2 3.7E-05 1.3E-09 53.1 12.0 63 222-284 59-131 (159)
196 1dce_A Protein (RAB geranylger 98.2 0.00041 1.4E-08 59.0 19.9 171 61-236 45-242 (567)
197 2hr2_A Hypothetical protein; a 98.2 4.1E-05 1.4E-09 52.8 11.3 96 47-143 13-130 (159)
198 1dce_A Protein (RAB geranylger 98.1 0.0005 1.7E-08 58.5 19.3 172 94-270 43-241 (567)
199 2l6j_A TPR repeat-containing p 98.1 4.5E-06 1.5E-10 54.1 4.9 63 46-109 5-67 (111)
200 2l6j_A TPR repeat-containing p 98.1 3E-06 1E-10 55.0 3.7 64 185-249 4-67 (111)
201 1zu2_A Mitochondrial import re 98.0 3.1E-05 1.1E-09 53.3 8.2 99 21-123 13-132 (158)
202 2kat_A Uncharacterized protein 98.0 0.00019 6.5E-09 46.8 11.7 79 168-248 3-81 (115)
203 1na3_A Designed protein CTPR2; 98.0 0.0001 3.5E-09 45.5 9.5 62 47-109 11-72 (91)
204 2kat_A Uncharacterized protein 97.9 8.7E-05 3E-09 48.4 9.0 62 80-142 19-80 (115)
205 1na3_A Designed protein CTPR2; 97.9 0.00013 4.4E-09 45.1 9.3 83 9-93 8-90 (91)
206 1zu2_A Mitochondrial import re 97.8 6.5E-05 2.2E-09 51.7 6.9 100 56-159 13-133 (158)
207 3ma5_A Tetratricopeptide repea 97.8 0.00031 1.1E-08 44.5 9.8 64 184-248 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.7 0.0004 1.4E-08 44.0 8.5 59 47-106 9-67 (100)
209 3qwp_A SET and MYND domain-con 97.6 0.00037 1.2E-08 57.1 9.1 94 191-284 293-400 (429)
210 3qww_A SET and MYND domain-con 97.6 0.00025 8.4E-09 58.0 8.0 88 197-284 310-411 (433)
211 3ly7_A Transcriptional activat 97.5 0.0073 2.5E-07 47.8 15.2 143 42-189 191-347 (372)
212 3qww_A SET and MYND domain-con 97.4 0.00057 2E-08 55.9 8.5 85 164-248 312-410 (433)
213 3ly7_A Transcriptional activat 97.4 0.026 8.8E-07 44.7 17.0 144 76-225 190-348 (372)
214 2kc7_A BFR218_protein; tetratr 97.4 0.0011 3.8E-08 41.6 7.7 57 192-249 7-64 (99)
215 3mkq_A Coatomer beta'-subunit; 97.4 0.014 4.7E-07 51.9 17.2 149 22-209 611-760 (814)
216 3mkq_A Coatomer beta'-subunit; 97.3 0.0068 2.3E-07 53.9 14.8 131 84-247 633-763 (814)
217 3qwp_A SET and MYND domain-con 97.3 0.00099 3.4E-08 54.5 8.5 87 162-248 299-399 (429)
218 2kc7_A BFR218_protein; tetratr 97.2 0.0049 1.7E-07 38.5 9.2 59 226-285 6-65 (99)
219 1pc2_A Mitochondria fission pr 97.1 0.0098 3.4E-07 40.5 10.6 82 166-249 14-100 (152)
220 3u64_A Protein TP_0956; tetrat 97.1 0.055 1.9E-06 41.2 15.8 84 97-182 180-272 (301)
221 1pc2_A Mitochondria fission pr 96.9 0.0052 1.8E-07 41.8 7.7 84 24-109 12-100 (152)
222 3bee_A Putative YFRE protein; 96.9 0.011 3.7E-07 36.7 8.7 48 61-109 25-72 (93)
223 2v5f_A Prolyl 4-hydroxylase su 96.8 0.018 6.2E-07 36.5 9.6 63 47-109 7-75 (104)
224 4h7y_A Dual specificity protei 96.8 0.032 1.1E-06 37.7 10.3 103 114-218 12-127 (161)
225 2v5f_A Prolyl 4-hydroxylase su 96.7 0.018 6.3E-07 36.5 8.9 69 7-75 2-76 (104)
226 3bee_A Putative YFRE protein; 96.7 0.046 1.6E-06 33.8 10.8 48 131-179 25-72 (93)
227 3mkq_B Coatomer subunit alpha; 96.6 0.11 3.7E-06 36.4 13.8 100 90-210 15-114 (177)
228 1wy6_A Hypothetical protein ST 96.5 0.089 3E-06 34.8 16.4 137 127-285 19-155 (172)
229 1wy6_A Hypothetical protein ST 96.4 0.098 3.3E-06 34.7 14.6 65 186-251 92-156 (172)
230 4h7y_A Dual specificity protei 96.3 0.1 3.4E-06 35.3 10.2 115 148-265 11-138 (161)
231 3u64_A Protein TP_0956; tetrat 96.2 0.056 1.9E-06 41.2 10.1 82 26-109 179-269 (301)
232 1nzn_A CGI-135 protein, fissio 96.2 0.1 3.5E-06 34.2 9.9 66 218-284 33-103 (126)
233 3mkq_B Coatomer subunit alpha; 96.1 0.2 6.9E-06 35.0 16.1 129 123-281 13-141 (177)
234 1nzn_A CGI-135 protein, fissio 95.5 0.3 1E-05 32.0 10.3 85 24-109 15-103 (126)
235 4gns_B Protein CSD3, chitin bi 95.4 0.52 1.8E-05 41.3 14.1 51 195-246 347-397 (754)
236 1v54_E Cytochrome C oxidase po 95.1 0.32 1.1E-05 30.2 8.3 63 200-263 25-87 (109)
237 4gns_B Protein CSD3, chitin bi 94.9 0.44 1.5E-05 41.8 12.1 126 14-142 252-398 (754)
238 2ff4_A Probable regulatory pro 94.7 0.21 7.3E-06 40.2 9.3 73 188-261 174-251 (388)
239 2ff4_A Probable regulatory pro 94.4 0.33 1.1E-05 39.1 9.8 55 121-176 177-231 (388)
240 1v54_E Cytochrome C oxidase po 94.2 0.56 1.9E-05 29.1 8.8 61 96-157 26-86 (109)
241 2y69_E Cytochrome C oxidase su 93.9 0.65 2.2E-05 30.6 8.3 64 200-264 68-131 (152)
242 3lvg_A Clathrin heavy chain 1; 93.6 6.4E-05 2.2E-09 60.9 -12.9 203 10-233 54-276 (624)
243 3o48_A Mitochondria fission 1 92.4 1.6 5.3E-05 28.8 9.1 66 183-248 38-106 (134)
244 4b4t_P 26S proteasome regulato 92.2 4.1 0.00014 33.4 19.8 190 58-248 29-246 (445)
245 2y69_E Cytochrome C oxidase su 92.0 1.7 6E-05 28.6 9.3 61 63-124 71-131 (152)
246 4fhn_B Nucleoporin NUP120; pro 91.8 8.4 0.00029 36.0 16.1 23 49-71 846-868 (1139)
247 4fhn_B Nucleoporin NUP120; pro 91.6 3.8 0.00013 38.3 13.4 121 149-272 841-988 (1139)
248 3ffl_A Anaphase-promoting comp 90.9 1.4 4.8E-05 30.3 7.4 30 115-144 122-151 (167)
249 4ady_A RPN2, 26S proteasome re 90.6 9.6 0.00033 34.5 18.9 155 124-284 499-658 (963)
250 4b4t_R RPN7, 26S proteasome re 90.3 0.99 3.4E-05 36.9 7.5 61 152-212 133-195 (429)
251 3ffl_A Anaphase-promoting comp 89.6 3.7 0.00013 28.3 10.8 126 154-292 24-159 (167)
252 1y8m_A FIS1; mitochondria, unk 89.2 3.6 0.00012 27.5 11.2 68 182-249 36-106 (144)
253 3lvg_A Clathrin heavy chain 1; 88.8 0.0061 2.1E-07 49.8 -6.3 216 9-240 82-324 (624)
254 4b4t_R RPN7, 26S proteasome re 88.8 7.7 0.00026 31.6 11.7 98 117-214 133-237 (429)
255 1wdy_A 2-5A-dependent ribonucl 88.0 2.6 8.8E-05 31.6 8.1 211 15-244 7-240 (285)
256 3o48_A Mitochondria fission 1 87.1 4.8 0.00016 26.5 10.6 73 42-116 37-112 (134)
257 4b4t_P 26S proteasome regulato 86.8 12 0.0004 30.7 20.6 208 23-247 29-265 (445)
258 3eiq_C Programmed cell death p 86.3 11 0.00037 29.8 13.3 62 223-285 220-283 (358)
259 1zbp_A Hypothetical protein VP 84.9 8.6 0.00029 28.9 8.9 55 194-249 6-60 (273)
260 1qsa_A Protein (soluble lytic 84.6 19 0.00064 31.1 25.7 124 164-291 228-355 (618)
261 4ady_A RPN2, 26S proteasome re 83.5 26 0.00089 31.9 20.7 19 125-143 570-588 (963)
262 3txn_A 26S proteasome regulato 82.1 18 0.00062 29.1 24.8 232 11-246 20-281 (394)
263 1y8m_A FIS1; mitochondria, unk 81.4 9.8 0.00033 25.5 12.0 21 158-178 85-105 (144)
264 2d2s_A Exocyst complex compone 81.2 14 0.00048 27.2 9.1 90 156-248 24-119 (235)
265 1wdy_A 2-5A-dependent ribonucl 80.3 7.7 0.00026 28.9 7.7 208 50-279 7-240 (285)
266 2uwj_G Type III export protein 80.3 8.3 0.00028 23.9 7.0 77 165-249 21-97 (115)
267 2p58_C Putative type III secre 79.9 8.6 0.00029 23.9 7.8 77 165-249 22-98 (116)
268 4b4t_S RPN3, 26S proteasome re 79.8 8.9 0.00031 32.0 8.1 15 202-216 417-431 (523)
269 3esl_A Checkpoint serine/threo 79.7 14 0.00049 26.3 9.3 53 166-218 95-148 (202)
270 2uwj_G Type III export protein 79.1 9.2 0.00031 23.8 7.3 51 229-285 48-98 (115)
271 2p58_C Putative type III secre 78.4 9.8 0.00033 23.7 8.0 51 229-285 49-99 (116)
272 3eiq_C Programmed cell death p 78.3 23 0.0008 28.0 15.2 78 188-266 220-299 (358)
273 3kea_A K1L; tropism, ANK repea 78.0 15 0.00053 27.6 8.7 22 190-211 163-184 (285)
274 3hra_A Ankyrin repeat family p 77.1 14 0.00049 25.7 7.9 16 20-35 12-27 (201)
275 2zu6_B Programmed cell death p 76.0 25 0.00085 27.1 13.4 95 188-283 169-269 (307)
276 3esl_A Checkpoint serine/threo 75.0 20 0.00069 25.6 10.0 56 128-183 92-148 (202)
277 3txn_A 26S proteasome regulato 74.5 32 0.0011 27.7 21.0 230 47-280 21-280 (394)
278 1k1a_A B-cell lymphoma 3-encod 74.3 19 0.00064 26.0 8.1 14 21-34 17-30 (241)
279 2ion_A PDCD4, programmed cell 73.8 18 0.00062 24.5 7.7 25 153-177 12-36 (152)
280 2wpv_A GET4, UPF0363 protein Y 73.5 29 0.001 26.8 18.1 25 103-127 80-104 (312)
281 3hra_A Ankyrin repeat family p 73.2 9.9 0.00034 26.6 6.2 15 240-254 158-172 (201)
282 3eu9_A Huntingtin-interacting 72.5 9 0.00031 27.6 6.0 18 263-280 215-232 (240)
283 2ion_A PDCD4, programmed cell 71.8 18 0.00063 24.5 6.7 97 187-284 11-113 (152)
284 2nsz_A Programmed cell death p 71.6 18 0.00063 23.6 8.0 82 188-270 10-93 (129)
285 3bu8_A Telomeric repeat-bindin 71.6 26 0.00088 25.3 8.5 22 227-248 121-142 (235)
286 2nsz_A Programmed cell death p 71.2 19 0.00064 23.6 8.7 66 152-218 9-76 (129)
287 3lpz_A GET4 (YOR164C homolog); 71.2 35 0.0012 26.7 20.4 22 192-213 194-215 (336)
288 3lpz_A GET4 (YOR164C homolog); 67.8 42 0.0014 26.3 21.0 168 47-248 37-215 (336)
289 2zu6_B Programmed cell death p 66.9 42 0.0014 25.9 10.8 198 83-285 6-232 (307)
290 3eu9_A Huntingtin-interacting 66.5 22 0.00075 25.5 7.0 206 17-246 13-233 (240)
291 1k1a_A B-cell lymphoma 3-encod 66.3 33 0.0011 24.6 9.1 29 51-79 12-40 (241)
292 2wpv_A GET4, UPF0363 protein Y 65.6 45 0.0015 25.8 22.2 17 195-211 198-214 (312)
293 3jxi_A Vanilloid receptor-rela 65.5 7.8 0.00027 28.6 4.4 20 262-281 229-248 (260)
294 1qsa_A Protein (soluble lytic 65.3 67 0.0023 27.7 21.7 152 130-285 229-411 (618)
295 1ug3_A EIF4GI, eukaryotic prot 64.0 14 0.00049 28.9 5.7 25 118-142 14-38 (339)
296 3b7b_A Euchromatic histone-lys 61.9 22 0.00076 25.6 6.2 51 230-284 184-236 (237)
297 3l6a_A Eukaryotic translation 60.1 36 0.0012 27.0 7.3 61 117-181 14-79 (364)
298 4aez_C MAD3, mitotic spindle c 59.7 48 0.0016 24.1 8.1 52 202-253 131-183 (223)
299 4a1g_A Mitotic checkpoint seri 59.6 38 0.0013 22.9 9.7 50 134-183 84-134 (152)
300 4a1g_A Mitotic checkpoint seri 58.5 40 0.0014 22.8 10.0 71 77-150 65-136 (152)
301 2xig_A Ferric uptake regulatio 57.2 41 0.0014 22.6 6.8 38 197-234 38-75 (150)
302 1mzb_A Ferric uptake regulatio 57.1 38 0.0013 22.2 6.3 55 39-94 12-67 (136)
303 2wvi_A Mitotic checkpoint seri 57.0 44 0.0015 22.9 8.7 51 169-219 79-130 (164)
304 4ets_A Ferric uptake regulatio 56.3 26 0.00089 24.0 5.3 57 37-94 25-83 (162)
305 3t8k_A Uncharacterized protein 55.9 48 0.0017 23.0 9.4 90 21-114 14-108 (186)
306 3eyy_A Putative iron uptake re 55.6 32 0.0011 22.9 5.6 34 61-94 33-66 (145)
307 3jxi_A Vanilloid receptor-rela 55.4 7.6 0.00026 28.7 2.7 54 18-71 10-72 (260)
308 2w57_A Ferric uptake regulatio 55.1 44 0.0015 22.4 6.3 44 51-94 22-66 (150)
309 3pvs_A Replication-associated 54.9 87 0.003 25.7 13.7 27 79-107 193-219 (447)
310 3aji_A 26S proteasome non-ATPa 54.9 54 0.0019 23.3 8.0 20 17-36 10-29 (231)
311 4aez_C MAD3, mitotic spindle c 54.8 41 0.0014 24.5 6.2 51 168-218 132-183 (223)
312 2w57_A Ferric uptake regulatio 54.6 46 0.0016 22.3 6.3 34 201-234 33-66 (150)
313 2fu4_A Ferric uptake regulatio 54.3 30 0.001 20.1 6.4 59 211-270 8-67 (83)
314 1mzb_A Ferric uptake regulatio 54.2 43 0.0015 21.9 6.3 35 200-234 33-67 (136)
315 2fe3_A Peroxide operon regulat 52.5 48 0.0017 22.0 7.1 44 51-94 27-70 (145)
316 1zbp_A Hypothetical protein VP 52.2 74 0.0025 24.0 14.4 52 91-143 8-59 (273)
317 3kea_A K1L; tropism, ANK repea 52.0 72 0.0025 23.9 9.5 202 17-245 35-243 (285)
318 2ijq_A Hypothetical protein; s 51.6 55 0.0019 22.4 8.3 60 223-283 36-103 (161)
319 3eyy_A Putative iron uptake re 51.6 36 0.0012 22.7 5.3 34 201-234 33-66 (145)
320 3mwm_A ZUR, putative metal upt 51.4 25 0.00084 23.3 4.4 46 49-94 17-62 (139)
321 2wvi_A Mitotic checkpoint seri 51.1 57 0.0019 22.4 9.3 51 134-184 79-130 (164)
322 2fe3_A Peroxide operon regulat 50.9 52 0.0018 21.9 7.1 35 234-268 35-69 (145)
323 3kae_A CDC27, possible protein 49.3 65 0.0022 22.5 7.1 29 257-285 116-144 (242)
324 3ltm_A Alpha-REP4; protein eng 49.2 66 0.0022 22.6 17.5 17 219-235 156-172 (211)
325 2d2s_A Exocyst complex compone 49.2 76 0.0026 23.3 9.8 92 120-214 23-120 (235)
326 2o03_A Probable zinc uptake re 47.1 29 0.00098 22.6 4.2 44 51-94 16-59 (131)
327 2o03_A Probable zinc uptake re 46.3 31 0.001 22.5 4.3 38 197-234 22-59 (131)
328 4gq2_M Nucleoporin NUP120; bet 45.1 1.7E+02 0.0058 26.8 10.0 22 190-211 845-866 (950)
329 2ijq_A Hypothetical protein; s 45.0 72 0.0025 21.8 8.0 50 129-178 46-103 (161)
330 4ets_A Ferric uptake regulatio 44.9 71 0.0024 21.7 6.4 59 106-165 24-84 (162)
331 2keb_A DNA polymerase subunit 44.7 53 0.0018 20.2 5.7 31 204-234 28-58 (101)
332 3ljn_A Hypothetical protein; a 44.4 1.1E+02 0.0037 23.7 8.9 216 44-280 17-266 (364)
333 2b7e_A PRE-mRNA processing pro 44.4 35 0.0012 18.7 3.5 29 167-195 3-31 (59)
334 3aji_A 26S proteasome non-ATPa 43.1 86 0.0029 22.2 7.7 179 52-254 10-199 (231)
335 3e3v_A Regulatory protein RECX 42.7 82 0.0028 21.8 9.2 48 133-181 51-98 (177)
336 2rfa_A Transient receptor pote 42.3 89 0.0031 22.1 8.6 52 17-70 7-59 (232)
337 3bqo_A Telomeric repeat-bindin 41.9 36 0.0012 24.2 4.0 19 193-211 125-143 (211)
338 3mwm_A ZUR, putative metal upt 41.7 55 0.0019 21.5 5.0 45 120-164 18-62 (139)
339 3f3f_C Nucleoporin NUP85; stru 40.9 1.3E+02 0.0045 25.5 7.9 73 200-274 496-568 (570)
340 3qil_A Clathrin heavy chain 1; 40.4 23 0.0008 22.8 2.7 52 47-101 34-85 (125)
341 3t8k_A Uncharacterized protein 40.0 91 0.0031 21.6 9.3 23 126-148 46-68 (186)
342 2xig_A Ferric uptake regulatio 39.6 83 0.0029 21.0 7.6 58 106-164 18-75 (150)
343 2dzn_A Probable 26S proteasome 39.1 86 0.0029 22.1 6.2 48 17-65 6-53 (228)
344 3c1d_A Protein ORAA, regulator 39.0 89 0.003 21.2 11.5 28 132-159 47-74 (159)
345 2r9g_A AAA ATPase, central reg 38.9 1E+02 0.0036 22.0 9.6 54 127-181 26-84 (204)
346 2pnn_A Transient receptor pote 38.2 43 0.0015 24.7 4.6 21 55-75 20-40 (273)
347 1ixm_A SPO0B, protein (sporula 37.8 73 0.0025 22.5 5.3 47 200-248 14-60 (192)
348 4b4t_S RPN3, 26S proteasome re 37.3 1.9E+02 0.0064 24.4 10.6 65 150-214 231-299 (523)
349 3qye_A TBC1 domain family memb 37.0 73 0.0025 24.7 5.8 75 206-280 209-287 (331)
350 2cos_A Serine/threonine protei 36.8 50 0.0017 17.7 3.2 18 264-281 29-48 (54)
351 2rg8_A Programmed cell death p 36.3 75 0.0026 21.8 5.0 25 153-177 13-37 (165)
352 3twr_A Tankyrase-2; ankyrin re 35.9 91 0.0031 20.6 5.6 13 21-33 16-28 (165)
353 3bge_A Predicted ATPase; struc 35.3 1.2E+02 0.0041 21.6 8.4 33 128-160 20-52 (201)
354 2keb_A DNA polymerase subunit 35.3 79 0.0027 19.5 5.9 29 31-59 30-58 (101)
355 2fu4_A Ferric uptake regulatio 35.0 66 0.0023 18.5 6.7 32 131-162 33-64 (83)
356 3ljn_A Hypothetical protein; a 33.8 1E+02 0.0036 23.8 6.3 216 9-245 17-266 (364)
357 3c1d_A Protein ORAA, regulator 33.8 1.1E+02 0.0037 20.7 10.5 53 95-149 45-97 (159)
358 3ltm_A Alpha-REP4; protein eng 32.9 1.2E+02 0.0043 21.1 17.1 154 43-213 31-184 (211)
359 1ug3_A EIF4GI, eukaryotic prot 32.7 1.8E+02 0.006 22.7 13.5 64 13-77 14-78 (339)
360 1bd8_A P19INK4D CDK4/6 inhibit 32.6 53 0.0018 21.5 3.9 19 17-35 6-24 (156)
361 3e3v_A Regulatory protein RECX 32.4 1.2E+02 0.0043 20.9 10.5 115 166-283 49-165 (177)
362 4fke_A Aminopeptidase N; zinc 32.2 2.9E+02 0.01 25.2 16.9 159 84-248 690-859 (909)
363 3pvs_A Replication-associated 31.9 2.1E+02 0.0072 23.4 14.3 37 198-234 268-304 (447)
364 1bd8_A P19INK4D CDK4/6 inhibit 31.5 75 0.0026 20.7 4.6 17 54-70 8-24 (156)
365 2rg8_A Programmed cell death p 31.4 64 0.0022 22.1 4.1 24 84-107 14-37 (165)
366 4fke_A Aminopeptidase N; zinc 31.0 3.1E+02 0.011 25.0 19.1 158 49-213 690-859 (909)
367 3ygs_P Procaspase 9; apoptosis 31.0 92 0.0031 19.0 6.7 37 234-274 51-87 (97)
368 2qq8_A TBC1 domain family memb 30.9 75 0.0026 24.7 4.9 40 210-249 218-257 (334)
369 2qfz_A TBC1 domain family memb 30.8 1.8E+02 0.0061 22.7 7.1 79 206-284 230-315 (345)
370 2etb_A Transient receptor pote 30.4 1.5E+02 0.0052 21.3 7.2 20 56-75 10-29 (256)
371 3f3f_C Nucleoporin NUP85; stru 30.1 2.6E+02 0.0088 23.8 8.7 53 115-169 516-568 (570)
372 3ctd_A Putative ATPase, AAA fa 29.9 1.6E+02 0.0053 21.3 8.6 30 128-157 48-77 (213)
373 4g8k_A 2-5A-dependent ribonucl 28.8 1.9E+02 0.0066 22.0 13.0 100 171-285 220-324 (337)
374 3d5l_A Regulatory protein RECX 28.6 1.7E+02 0.0057 21.2 11.5 51 97-148 93-143 (221)
375 2ko4_A Mediator of RNA polymer 28.6 82 0.0028 18.4 3.4 32 110-141 31-62 (81)
376 3d5l_A Regulatory protein RECX 28.4 1.7E+02 0.0057 21.2 10.7 53 130-183 91-143 (221)
377 3lxu_X Tripeptidyl-peptidase 2 28.0 4.2E+02 0.014 25.6 10.4 78 96-176 1265-1342(1354)
378 1g1e_B SIN3A; four-helix bundl 26.8 1.1E+02 0.0037 18.4 6.5 28 236-264 10-37 (89)
379 3qil_A Clathrin heavy chain 1; 26.8 51 0.0018 21.3 2.6 55 185-242 32-86 (125)
380 1wty_A Hypothetical protein TT 26.6 1.3E+02 0.0043 19.1 6.2 66 165-236 3-69 (119)
381 2qx5_A Nucleoporin NIC96; mRNA 26.3 3.3E+02 0.011 23.8 14.7 82 50-142 299-383 (661)
382 1n11_A Ankyrin; clathrin, BAND 26.2 2E+02 0.0069 22.9 6.9 51 15-69 16-68 (437)
383 2r9g_A AAA ATPase, central reg 24.7 1.9E+02 0.0066 20.6 9.9 17 199-215 28-44 (204)
384 3ltj_A Alpharep-4; protein eng 24.7 1.7E+02 0.0059 20.1 18.3 17 219-235 151-167 (201)
385 4gq2_M Nucleoporin NUP120; bet 24.7 4.1E+02 0.014 24.4 12.0 108 51-164 816-950 (950)
386 3lxu_X Tripeptidyl-peptidase 2 23.8 4.7E+02 0.016 25.3 9.1 33 197-231 1296-1328(1354)
387 3bge_A Predicted ATPase; struc 23.7 2E+02 0.0069 20.5 8.8 23 163-185 20-42 (201)
388 1ixm_A SPO0B, protein (sporula 23.3 1.5E+02 0.0051 20.9 4.9 23 190-212 37-59 (192)
389 3bqo_A Telomeric repeat-bindin 23.2 2.1E+02 0.0071 20.5 8.9 19 124-142 126-144 (211)
390 3mv2_A Coatomer subunit alpha; 22.9 2.7E+02 0.0093 21.7 9.4 49 202-250 187-237 (325)
391 2qq8_A TBC1 domain family memb 22.8 84 0.0029 24.5 3.8 81 61-145 170-258 (334)
392 2f6m_A Suppressor protein STP2 22.7 1.1E+02 0.0038 17.1 4.2 43 189-232 6-48 (65)
393 2etb_A Transient receptor pote 22.6 2.2E+02 0.0075 20.5 6.3 117 87-209 6-157 (256)
394 1d1d_A Protein (capsid protein 22.3 1.4E+02 0.0049 22.3 4.7 47 42-90 35-82 (262)
395 4g8k_A 2-5A-dependent ribonucl 22.1 2.6E+02 0.009 21.2 9.6 103 137-255 221-329 (337)
396 3ltj_A Alpharep-4; protein eng 21.8 2E+02 0.0069 19.7 17.6 138 79-232 58-195 (201)
397 2cwy_A Hypothetical protein TT 21.7 1.4E+02 0.0049 18.1 5.2 15 234-248 15-29 (94)
398 3t5v_B Nuclear mRNA export pro 21.6 2.9E+02 0.01 22.7 6.8 62 153-214 179-249 (455)
399 3t5v_B Nuclear mRNA export pro 21.1 2.5E+02 0.0084 23.2 6.3 26 224-249 180-205 (455)
400 2yru_A Steroid receptor RNA ac 21.1 1.7E+02 0.0059 18.7 9.8 20 265-284 71-90 (118)
401 1n11_A Ankyrin; clathrin, BAND 21.1 2.3E+02 0.0078 22.6 6.3 50 51-104 17-68 (437)
402 2dzn_A Probable 26S proteasome 21.0 1.1E+02 0.0036 21.6 3.9 51 52-103 6-56 (228)
403 3bu8_A Telomeric repeat-bindin 20.9 2.5E+02 0.0084 20.4 11.9 23 122-144 121-143 (235)
404 1q2z_A ATP-dependent DNA helic 20.8 78 0.0027 20.3 2.7 32 59-90 41-73 (120)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7.9e-37 Score=254.27 Aligned_cols=204 Identities=13% Similarity=0.146 Sum_probs=134.6
Q ss_pred HHHHHHHhhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCC---------hHH
Q 043969 64 IEWVYQQMSDEGYAPDI-LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDK---------PLA 133 (300)
Q Consensus 64 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 133 (300)
+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+. .+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444455544443332 23555666666666666666666666666666666666666666655443 466
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043969 214 KGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRN 267 (300)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (300)
.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777776654
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.7e-36 Score=250.24 Aligned_cols=205 Identities=13% Similarity=0.133 Sum_probs=167.0
Q ss_pred HHHHHHHhhhcCCCcCH-HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC---------HHH
Q 043969 29 VVERFIKSKLFNFRPFK-NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGK---------LDQ 98 (300)
Q Consensus 29 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 98 (300)
+..+.+++.+.+..+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||.+|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444555555544433 36788888888999999999999999888888899999999888877654 678
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043969 99 FHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMAN 178 (300)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (300)
|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043969 179 KGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233 (300)
Q Consensus 179 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (300)
.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999888999999999888888753
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.9e-28 Score=210.53 Aligned_cols=238 Identities=8% Similarity=-0.008 Sum_probs=149.8
Q ss_pred cCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 043969 43 PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL 122 (300)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (300)
++..+|+.++..+.+.|++++|.++|+++.+.++. +..++..++.++.+.|++++|.++++.+.+.. +.+..++..++
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 45556666666666666666666666666655422 45556666666666666666666666655432 34566666666
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHH
Q 043969 123 HVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202 (300)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (300)
..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|+++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHH
Confidence 66666777777777776666542 3345566666666777777777777776666543 335566666666666677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 043969 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR----GCNPN--FLVYNTLVSNLRNAGKLAEAHE 276 (300)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~ 276 (300)
+|.++|+++.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777766665432 25666666677777777777777776666654 44555 5566666666777777777777
Q ss_pred HHHHHHHcC
Q 043969 277 VIRHMVEKG 285 (300)
Q Consensus 277 ~~~~~~~~~ 285 (300)
+++++.+.+
T Consensus 538 ~~~~~~~~~ 546 (597)
T 2xpi_A 538 ALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 776666544
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.8e-28 Score=209.53 Aligned_cols=273 Identities=9% Similarity=-0.016 Sum_probs=248.3
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIV 86 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (300)
+++..+|+.++..+.+.|++++|+++|+++...+ +.+..+++.++.++.+.|++++|.++++++.+.. +.+..+++.+
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 5899999999999999999999999999998765 3466789999999999999999999999998764 4478899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCH
Q 043969 87 MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (300)
+..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++.+.+ +.+..+++.++.+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 999999999999999999998764 4568899999999999999999999999999874 55788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCCHHHHH
Q 043969 167 DACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK----GQLPN--VFTYNSMIRGFCMAGKFDEAC 240 (300)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~ 240 (300)
++|.++|+.+.+.. +.+..+|+.++..+.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998764 347889999999999999999999999999876 66787 789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..
T Consensus 537 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 537 DALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999864 4478999999999999999999999999999876
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.6e-24 Score=171.97 Aligned_cols=273 Identities=13% Similarity=0.078 Sum_probs=157.3
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIV 86 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (300)
|.+..+|..+...+.+.|++++|++.|+++.... +.+..+|..+..++...|++++|.+.|+++.+..+. +...+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4456677777777777777777777777766553 223446667777777777777777777666665322 34445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCC--------------------
Q 043969 87 MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGF-------------------- 146 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------- 146 (300)
...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+...
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 566666666666666666665543 33455566666666666666666666665554321
Q ss_pred -------------CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 147 -------------DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 147 -------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
+.+..++..+...+...|++++|...|+.+.+.. +.+..+|..+...+.+.|++++|...|+++.+
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1223444455555555555555555555555442 12334555555555555566666655555555
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 214 KGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.. +.+..++..+...+...|++++|...++++.+. .+.+..++..+..++.+.|++++|.+.++++.+..
T Consensus 300 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 42 234555555566666666666666666655543 12234555555566666666666666666665543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=2.1e-23 Score=169.95 Aligned_cols=251 Identities=10% Similarity=-0.005 Sum_probs=185.7
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 043969 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKY 91 (300)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (300)
.+..+...+...|++++|.+.|.++.... +.+..+|..+...+...|++++|...|+++.+..+. +...+..+...+.
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 34444455555555555655555555432 222345566666666666666666666666654322 4555666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHH
Q 043969 92 RLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKY 171 (300)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (300)
..|++++|...+++..... +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|..
T Consensus 215 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665543 3457788889999999999999999999999874 4467789999999999999999999
Q ss_pred HHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043969 172 FFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC 251 (300)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (300)
.|+.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|...++++.+..
T Consensus 293 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~- 369 (388)
T 1w3b_A 293 CYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS- 369 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 999998873 5577899999999999999999999999998863 3468899999999999999999999999999752
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 043969 252 NPNFLVYNTLVSNLRNAG 269 (300)
Q Consensus 252 ~~~~~~~~~li~~~~~~g 269 (300)
+.+...+..+...+...|
T Consensus 370 p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHhHHHHHHHcc
Confidence 234567777777666555
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.5e-22 Score=167.99 Aligned_cols=200 Identities=11% Similarity=-0.023 Sum_probs=106.1
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
+...+..+...+.+.|++++|+..|+++.... +.+..+|..+..++...|++++|...|+++.+.++. +..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 44555666666666666666666666655542 334556666666666666666666666666655422 4555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHH------------HHHhcCCChHHHHHHHHHHHHcCCCCcHhhH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSGFSPDF---HTYNILL------------HVLGKGDKPLAALNLLNHMKEVGFDPSVLHF 153 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (300)
++.+.|++++|...|+++.+.. +.+. ..+..+. ..+...|++++|...++++.+.. +.+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 6666666666666666665542 1122 3333332 22455555555555555555442 2344445
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
..+..+|.+.|++++|...|+.+.+.. +.+..++..+...+...|++++|...|+++.+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555544331 12334444455555555555555555554443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.2e-21 Score=162.56 Aligned_cols=270 Identities=13% Similarity=0.091 Sum_probs=231.0
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH---hhH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI---LTY 83 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 83 (300)
|.+..+|..+...+...|++++|++.|+++...+ +.+..++..+...+...|++++|...|+++.+..+. +. ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 4578889999999999999999999999998875 445678999999999999999999999999987432 34 555
Q ss_pred HHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHh
Q 043969 84 NIV------------MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVL 151 (300)
Q Consensus 84 ~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (300)
..+ ...+...|++++|...++.+.... +.+..++..+..+|.+.|++++|...++++.+.. +.+..
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 212 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 555 344889999999999999998764 5578889999999999999999999999998763 55788
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc-cccHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD-VVCYTVM------------ITSYIAAGELEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~p 218 (300)
++..+...|...|++++|...|+.+.+. .|+ ...+..+ ...+...|++++|...|+++.+.. |
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p 288 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--P 288 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence 9999999999999999999999999876 343 3344444 788999999999999999998853 4
Q ss_pred C-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 219 N-----VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 219 ~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+ ...+..+..++.+.|++++|...++++.+.. +.+...+..+..+|...|++++|.+.++++.+..
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4 4578899999999999999999999998752 3467899999999999999999999999998865
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=3.8e-21 Score=152.88 Aligned_cols=275 Identities=11% Similarity=-0.004 Sum_probs=234.7
Q ss_pred CCCCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH
Q 043969 5 GFPTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84 (300)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (300)
+.+.++..+..+...+...|++++|+++++++...+ +.+...+..++..+...|++++|..+++++.+..+. +...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHH
Confidence 456677788888889999999999999999988764 344557777888999999999999999999987533 678888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 85 IVMCAKYRLG-KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 85 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
.+...+...| ++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998775 4567889999999999999999999999998874 34556777799999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhccCC
Q 043969 164 GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKG--------QLPNVFTYNSMIRGFCMAGK 235 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~ 235 (300)
|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. .+.+..++..+..++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998764 3466788999999999999999999999987641 13346789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+++|...+++..+.. +.+...+..+..++...|++++|.+.++++.+..
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999863 3367788999999999999999999999998865
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.6e-19 Score=142.96 Aligned_cols=271 Identities=11% Similarity=0.045 Sum_probs=156.3
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCC--CCHhhHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA--PDILTYNIV 86 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 86 (300)
+..++..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+..+. .+...+..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 34555555566666666666666666655442 223345566666666666666666666666554320 133333333
Q ss_pred ------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHH
Q 043969 87 ------------MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT 154 (300)
Q Consensus 87 ------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (300)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 192 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 345555666666666666665543 3445556666666666666666666666666542 33555666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 043969 155 TLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYT------------VMITSYIAAGELEKAQDLFDGMITKGQLPNV-- 220 (300)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-- 220 (300)
.+...+...|++++|...++...+.. +.+...+. .+...+.+.|++++|...++++.+.... +.
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 270 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEY 270 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHH
Confidence 66666666666666666666665542 11222222 1244466667777777777666654322 22
Q ss_pred --HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 221 --FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 221 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
..+..+..++...|++++|...+++..+.. +.+..++..+...+...|++++|.+.++++.+..
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 224445667777777777777777776642 2355667777777777777777777777777655
No 11
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=5.1e-21 Score=154.57 Aligned_cols=266 Identities=8% Similarity=-0.106 Sum_probs=213.5
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
+...+..+...+.+.|++++|++.|+++.... +.+..+|..+...+...|++++|...|+++.+..+ .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44558888889999999999999999988764 45667899999999999999999999999988753 36888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-Hh----------HHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-CcHhhHHHH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSGFSPD-FH----------TYNILLHVLGKGDKPLAALNLLNHMKEVGFD-PSVLHFTTL 156 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 156 (300)
.+...|++++|...++++.+.. |+ .. .+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999987753 32 22 2334577889999999999999999887422 167888999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 043969 157 MDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236 (300)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (300)
...+...|++++|...|+...+.. +.+..+|..+..++...|++++|...|+++.+... .+..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 999999999999999999988763 34677899999999999999999999999988632 3588899999999999999
Q ss_pred HHHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 237 DEACTMMKEMESRGC---N--------PNFLVYNTLVSNLRNAGKLAEAHEVIRH 280 (300)
Q Consensus 237 ~~a~~~~~~~~~~~~---~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 280 (300)
++|...++++.+... . .+...|..+..++...|+.+.+.+..++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999886411 1 1357788899999999999988877654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.8e-19 Score=142.84 Aligned_cols=270 Identities=11% Similarity=0.002 Sum_probs=225.6
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
|+..+..+...+...|++++|++.|++..... +.+..++..+...+...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 56678888899999999999999999988764 445678999999999999999999999999987533 6788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC---CCHhHHHHH------------HHHHhcCCChHHHHHHHHHHHHcCCCCcHhhH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSGFS---PDFHTYNIL------------LHVLGKGDKPLAALNLLNHMKEVGFDPSVLHF 153 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (300)
.+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|...++++.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999998774 2 244555544 578899999999999999998874 5577889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---------
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYN--------- 224 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--------- 224 (300)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 999999999999999999999998763 446788999999999999999999999999876332 344333
Q ss_pred ---HHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 225 ---SMIRGFCMAGKFDEACTMMKEMESRGCNPNF----LVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 225 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+...+.+.|++++|...+++..+.... +. ..+..+..++...|++++|.+.+++..+..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3367789999999999999999985322 22 235567788999999999999999999865
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=2.2e-20 Score=148.23 Aligned_cols=269 Identities=8% Similarity=-0.056 Sum_probs=222.9
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.++++.+..+ .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44556777888899999999999999988764 34666889999999999999999999999998753 37888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH--------------HH-HHhcCCChHHHHHHHHHHHHcCCCCcHhhH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL--------------LH-VLGKGDKPLAALNLLNHMKEVGFDPSVLHF 153 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (300)
.+...|++++|.+.++++.... +.+...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999998764 3333344333 23 3778899999999999998874 4477889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (300)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++++.+... .+..++..+..++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 999999999999999999999998763 34567889999999999999999999999988643 3688899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 234 GKFDEACTMMKEMESRGCNP-----------NFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
|++++|.+.+++..+..... +...+..+..++...|+.++|..++++.++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999998752221 467888999999999999999999876543
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=2.7e-20 Score=150.32 Aligned_cols=267 Identities=10% Similarity=-0.070 Sum_probs=195.4
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCA 89 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (300)
...+..+...+.+.|++++|+..++++.... +.+..+|..+...+...|++++|...|+++.+..+. +..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 4556677788888888888888888877654 345567888888888888888888888888876533 67778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH---------------HHHHHhcCCChHHHHHHHHHHHHcCCCC-cHhhH
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI---------------LLHVLGKGDKPLAALNLLNHMKEVGFDP-SVLHF 153 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 153 (300)
+...|++++|...++++.... +.+...+.. .+..+...|++++|...++++.+..... +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 888888888888888887764 222222221 1233337788888888888887763221 46777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (300)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..+|.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 888888888888888888888877653 3346678888888888888888888888887753 23677788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 234 GKFDEACTMMKEMESRGCN----------PNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 281 (300)
|++++|...+++..+.... ....+|..+..+|...|+.++|..++++.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 8888888888887763111 11567888888888888888888777643
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=3e-19 Score=144.21 Aligned_cols=259 Identities=11% Similarity=-0.016 Sum_probs=206.3
Q ss_pred hccccHHHHHH-HHHHhhhcCC-Cc--CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043969 21 GEVGLARKVVE-RFIKSKLFNF-RP--FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKL 96 (300)
Q Consensus 21 ~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (300)
.-.+++++|++ .+.+...... .| +...+..+...+...|++++|...|+++.+..+ .+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34578888888 8887655421 12 344688899999999999999999999998854 3788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHH---------------HHHHHH
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTT---------------LMDGLS 161 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~ 161 (300)
++|...++++.+.. +.+..++..+...+...|++++|...++++...... +...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999998875 557889999999999999999999999999886422 2222221 233444
Q ss_pred hCCCHHHHHHHHHHHHhCCCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 043969 162 RAGNLDACKYFFDEMANKGCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEAC 240 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 240 (300)
..|++++|...++.+.+..... +..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998763221 46788999999999999999999999998863 336889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 241 TMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
..++++.+.. +.+...+..+..+|.+.|++++|...++++.+.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998863 346788999999999999999999999999874
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.6e-19 Score=149.99 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHH
Q 043969 116 HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSY 195 (300)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (300)
.++..+...+...|++++|...++++.+.... ...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 34555555566666666666666666554322 5555666666666666666666666665542 23455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043969 196 IAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAH 275 (300)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 275 (300)
...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777777776665322 45566667777777777777777777766542 224456666666777777777777
Q ss_pred HHHHHHHHc
Q 043969 276 EVIRHMVEK 284 (300)
Q Consensus 276 ~~~~~~~~~ 284 (300)
+.++++.+.
T Consensus 393 ~~~~~a~~~ 401 (514)
T 2gw1_A 393 KQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=8.8e-19 Score=139.18 Aligned_cols=260 Identities=10% Similarity=-0.044 Sum_probs=217.2
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccC-cHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR-QYKLIEWVYQQMSDEGYAPDILTYNI 85 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (300)
|.+...+..++..+...|++++|...+.++.... +.+...|..+...+...| ++++|...|+++.+.... +...+..
T Consensus 53 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 130 (330)
T 3hym_B 53 PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIA 130 (330)
T ss_dssp TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHH
T ss_pred CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 3455666777888889999999999999988764 345668899999999999 999999999999987533 6778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (300)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 131 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 131 YGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGE 208 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccc
Confidence 9999999999999999999998875 4456778889999999999999999999998874 5567889999999999999
Q ss_pred HHHHHHHHHHHHhCC--------CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 043969 166 LDACKYFFDEMANKG--------CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFD 237 (300)
Q Consensus 166 ~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (300)
+++|...++...+.. .+....++..+..++...|++++|...+++..+... .+...+..+..++...|+++
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHH
Confidence 999999999987641 133456889999999999999999999999988643 36788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH
Q 043969 238 EACTMMKEMESRGCNPNFLVYNTLVSNL-RNAGKLA 272 (300)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 272 (300)
+|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus 288 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 288 NAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999988752 33567777777777 5666654
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.4e-19 Score=150.16 Aligned_cols=269 Identities=10% Similarity=-0.053 Sum_probs=226.8
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCA 89 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (300)
...+......+.+.|++++|+..|+++...+ |+...|..+..++...|++++|...++++.+..+. +..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4566777888999999999999999998874 78889999999999999999999999999987633 67899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC----------------------------------------------------------
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGF---------------------------------------------------------- 111 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~---------------------------------------------------------- 111 (300)
+...|++++|...|+.+...+-
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999999998866541
Q ss_pred --------------------CCCHhHHHHHHHHHhc---CCChHHHHHHHHHHHH-----cCC--------CCcHhhHHH
Q 043969 112 --------------------SPDFHTYNILLHVLGK---GDKPLAALNLLNHMKE-----VGF--------DPSVLHFTT 155 (300)
Q Consensus 112 --------------------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 155 (300)
+.+...+......+.. .|++++|...++++.+ ..- +.+...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1114455555554444 8999999999999987 311 234567888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 043969 156 LMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK 235 (300)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (300)
+...+...|++++|...++.+.+.. |+...+..+..++...|++++|...++++.+... .+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCC
Confidence 8999999999999999999998874 3477888999999999999999999999988743 367889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 236 FDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+++|...+++..+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 999999999999863 3356788889999999999999999999998865
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=1.2e-18 Score=135.94 Aligned_cols=253 Identities=15% Similarity=0.137 Sum_probs=200.7
Q ss_pred HHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043969 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLD 97 (300)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (300)
+.....|++.+|++.+++....+..+.......+.+++...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 44455799999999998876543222233556778999999999999876643 2 3567778888889999999999
Q ss_pred HHHHHHHHHHhCCCCC-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043969 98 QFHRLLDEMGRSGFSP-DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM 176 (300)
Q Consensus 98 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (300)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998776434 556677777889999999999999987 467788889999999999999999999999
Q ss_pred HhCCCCCccccHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043969 177 ANKGCMPDVVCYTVM----ITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCN 252 (300)
Q Consensus 177 ~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (300)
.+.. |+.. ...+ +..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +
T Consensus 157 ~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 157 QDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 8763 5532 2233 23344458999999999999987 44588899999999999999999999999988863 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 043969 253 PNFLVYNTLVSNLRNAGKLAE-AHEVIRHMVEKG 285 (300)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~ 285 (300)
-+..++..++..+...|+.++ +.++++++.+.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 467788889999999999875 678999988776
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=3.9e-19 Score=143.54 Aligned_cols=237 Identities=11% Similarity=-0.028 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
+...+..+...+.+.|++++|...|+++.+..+. +..++..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3446888999999999999999999999987543 78899999999999999999999999998875 456889999999
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHh----------hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CccccHHHHH
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSVL----------HFTTLMDGLSRAGNLDACKYFFDEMANKGCM-PDVVCYTVMI 192 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 192 (300)
+|...|++++|...++++.+.. +.+.. .+..+...+...|++++|...++.+.+.... ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998753 11222 2334578899999999999999999886322 1577899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 043969 193 TSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLA 272 (300)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 272 (300)
..+...|++++|...|+++.+.. +.+..+|..+..+|...|++++|...+++..+.. +.+..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998874 3478899999999999999999999999999862 335788999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 043969 273 EAHEVIRHMVEKG 285 (300)
Q Consensus 273 ~a~~~~~~~~~~~ 285 (300)
+|...++++.+..
T Consensus 299 ~A~~~~~~al~~~ 311 (365)
T 4eqf_A 299 EAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998743
No 21
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=167.01 Aligned_cols=113 Identities=11% Similarity=0.157 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHh---CCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMAN---KGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMI 227 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 227 (300)
.||+++|++|++.|++++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3455555555555555555555544432 2445555555555555555555555555555555555555555555555
Q ss_pred HHHhccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 228 RGFCMAGK-FDEACTMMKEMESRGCNPNFLVYNTLVS 263 (300)
Q Consensus 228 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (300)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55555444 2444455555555555555555554443
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=162.80 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhhh---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 043969 46 NSYNAILHALLGIRQYKLIEWVYQQMSD---EGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL 122 (300)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (300)
.+|+++|.+|++.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3899999999999999999999988764 5899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCh-HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc------cccHHHHHHHH
Q 043969 123 HVLGKGDKP-LAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD------VVCYTVMITSY 195 (300)
Q Consensus 123 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~ 195 (300)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++..+.+ ..+..|+ ..+...|.+.|
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHHH
Confidence 999999985 78999999999999999999999998765543 333333333 2234443 44555666666
Q ss_pred HhcC---------CHHHHHHHHHHH
Q 043969 196 IAAG---------ELEKAQDLFDGM 211 (300)
Q Consensus 196 ~~~~---------~~~~a~~~~~~~ 211 (300)
.+.+ ..++-.++|++-
T Consensus 283 s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 283 AKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcCccccCCHHHHHHHHHHH
Confidence 6655 245666666653
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=6.8e-18 Score=143.08 Aligned_cols=266 Identities=12% Similarity=0.008 Sum_probs=196.3
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043969 11 RTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAK 90 (300)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (300)
..|..+...+.+.|++++|++.|+++...+ +.+...|..+..++...|++++|++.|+++.+..+. +..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 445556666677777777777777766653 344556777777777777777777777777665432 566666666777
Q ss_pred HhcCCHHHHHHHHH------------------------------------------------------------------
Q 043969 91 YRLGKLDQFHRLLD------------------------------------------------------------------ 104 (300)
Q Consensus 91 ~~~~~~~~a~~~~~------------------------------------------------------------------ 104 (300)
...|++++|...|+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 77777776666553
Q ss_pred -------------------------------------------HHHhCCCCCC--------HhHHHHHHHHHhcCCChHH
Q 043969 105 -------------------------------------------EMGRSGFSPD--------FHTYNILLHVLGKGDKPLA 133 (300)
Q Consensus 105 -------------------------------------------~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~ 133 (300)
.+.+. .|+ ..++..+...+...|++++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 22222 122 1235555567778888999
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
|...+++..+. .|+...+..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...++++.+
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999988886 3457788888888999999999999999887763 33567888888999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 214 KGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 339 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 339 LNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 6432 56788889999999999999999999988763 3456788888889999999999999999987654
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=3.8e-17 Score=138.45 Aligned_cols=234 Identities=12% Similarity=0.049 Sum_probs=182.4
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHh---------------
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQM--------------- 71 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------- 71 (300)
|.++.+|..+...+.+.|++++|++.+++....+ +.+..++..+..++...|++++|...|+.+
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 4567888888899999999999999999887764 445668888888888888888887766422
Q ss_pred --------------------------------------------------------------------------------
Q 043969 72 -------------------------------------------------------------------------------- 71 (300)
Q Consensus 72 -------------------------------------------------------------------------------- 71 (300)
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred --------------hhCCCCCC--------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCC
Q 043969 72 --------------SDEGYAPD--------ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD 129 (300)
Q Consensus 72 --------------~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (300)
.+. .|+ ..++..+...+...|++++|...++.+... .|+...+..+...+...|
T Consensus 215 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKE 290 (537)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhc
Confidence 111 111 123455556777889999999999999886 466788888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 043969 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFD 209 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (300)
++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++
T Consensus 291 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988764 4467788888899999999999999999888763 3356678888888899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 210 GMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 210 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
++.+... .+...+..+...+...|++++|...++++.+
T Consensus 369 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 369 ETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8887632 3566777788888888888888888877664
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=4e-17 Score=127.32 Aligned_cols=248 Identities=14% Similarity=0.088 Sum_probs=198.9
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHH
Q 043969 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAP-DILTYNIVMCAK 90 (300)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 90 (300)
....+.++|...|+++.|+..++.. -+|+..++..+...+...++.++|++.++++...+..| +...+..+...+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 4456778999999999999877552 35677789999999999999999999999999876545 566677777899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhH---HHHHHHHHhCCCHH
Q 043969 91 YRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHF---TTLMDGLSRAGNLD 167 (300)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 167 (300)
...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++++.+.. |+.... ..++..+...|+++
T Consensus 112 ~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp HHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHH
T ss_pred HHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHH
Confidence 999999999999987 4688899999999999999999999999999874 443211 22334455669999
Q ss_pred HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHH
Q 043969 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE-ACTMMKEM 246 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~ 246 (300)
+|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+... -+..++..++..+...|+.++ +.++++++
T Consensus 184 eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999887 355778899999999999999999999999988743 378899999999999999876 67899998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043969 247 ESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVI 278 (300)
Q Consensus 247 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 278 (300)
.+. .|+... +.....+.+.++++..-|
T Consensus 262 ~~~--~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 262 KDA--HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 875 455433 233455666666655433
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.6e-19 Score=144.78 Aligned_cols=235 Identities=14% Similarity=0.164 Sum_probs=100.8
Q ss_pred ccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043969 22 EVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHR 101 (300)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (300)
+.|+.++|.+.+++.. .| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4567889999998872 23 48999999999999999999999652 477799999999999999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043969 102 LLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181 (300)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (300)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877764 4567888999999999999999887774 367779999999999999999999999966
Q ss_pred CCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043969 182 MPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTL 261 (300)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (300)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 47999999999999999999999988 2789999999999999999999655443 22233445578
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-----hHHHHHHHhhhh
Q 043969 262 VSNLRNAGKLAEAHEVIRHMVEKG-----KYIHLVSKFKRY 297 (300)
Q Consensus 262 i~~~~~~g~~~~a~~~~~~~~~~~-----~~~~l~~~~~~~ 297 (300)
+..|.+.|++++|..+++..+... .|..+.-++++|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 889999999999999999998654 566665555554
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.8e-17 Score=131.39 Aligned_cols=235 Identities=9% Similarity=-0.019 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
...+..+...+...|++++|..+|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 346778888999999999999999999987543 77888899999999999999999999998874 5578889999999
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHH--------------HH-HHHhCCCHHHHHHHHHHHHhCCCCCccccHH
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTL--------------MD-GLSRAGNLDACKYFFDEMANKGCMPDVVCYT 189 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (300)
+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++.+.+.. +.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 999999999999999998863 2233333333 22 3778899999999999998764 33677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043969 190 VMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAG 269 (300)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 269 (300)
.+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999988643 368899999999999999999999999998863 346788899999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 043969 270 KLAEAHEVIRHMVEKG 285 (300)
Q Consensus 270 ~~~~a~~~~~~~~~~~ 285 (300)
++++|.+.++++.+..
T Consensus 255 ~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC
Confidence 9999999999987644
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.9e-17 Score=124.46 Aligned_cols=224 Identities=14% Similarity=0.076 Sum_probs=113.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF--SPD----FHTYNI 120 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 120 (300)
.|..+...+...|++++|...|+++.+.. .+..++..+..++...|++++|...+++..+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44444555555555555555555555443 3444555555555555555555555555433210 001 344455
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE 200 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (300)
+...+...|++++|...+++..+.. |+. ..+...|++++|...++...... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 5555555555555555555555432 221 22334455555555555555431 1233445555555555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRH 280 (300)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 280 (300)
+++|...+++..+... .+..++..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666666655555422 245555555556666666666666666555532 22345555555556666666666666655
Q ss_pred HHHc
Q 043969 281 MVEK 284 (300)
Q Consensus 281 ~~~~ 284 (300)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=3.3e-17 Score=122.33 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 043969 164 GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMM 243 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (300)
|++++|...++...+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..+..++...|++++|...+
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444443331 1123333444444444444444444444444433 24444444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 244 KEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRH 280 (300)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 280 (300)
++..+.. +.+...+..+..++...|++++|.+.+++
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444321 11233344444444444444444444443
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=2.3e-17 Score=123.22 Aligned_cols=198 Identities=11% Similarity=0.053 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
+...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..+++..+.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3344555555555555555555555555554322 44555555555555555555555555555443 233445555555
Q ss_pred HHhcC-----------CChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHH
Q 043969 124 VLGKG-----------DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMI 192 (300)
Q Consensus 124 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 192 (300)
++... |++++|+..+++..+.. |.+...+..+..++...|++++|...|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 77777777777776653 3345566666677777777777777777776665 4566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 193 TSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
.++...|++++|+..|++..+... .+...+..+...+...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777766532 256667777777777777777777776543
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=8.8e-17 Score=123.04 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=194.7
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCC--CC----Hhh
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA--PD----ILT 82 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 82 (300)
....|..+...+...|++++|++.+++..... .+...|..+...+...|++++|...+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678888999999999999999999998876 77779999999999999999999999999875322 12 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (300)
+..+...+...|++++|...+++.... .|+.. .+...|++++|...++.+.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 888999999999999999999999886 35533 4556688999999999998863 3456778889999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 043969 163 AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTM 242 (300)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 242 (300)
.|++++|...++...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999998764 3467789999999999999999999999998874 33688899999999999999999999
Q ss_pred HHHHHHC
Q 043969 243 MKEMESR 249 (300)
Q Consensus 243 ~~~~~~~ 249 (300)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998864
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=1.9e-17 Score=128.13 Aligned_cols=250 Identities=10% Similarity=-0.074 Sum_probs=194.9
Q ss_pred HhhccccHHHHHHHHHHhhhcCC--C-cCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 043969 19 TCGEVGLARKVVERFIKSKLFNF--R-PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGK 95 (300)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (300)
.....+++++|++.++++..... + .+..+|..+...+...|++++|...|+++.+..+. +..++..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccC
Confidence 44567899999999999877532 1 23458899999999999999999999999987533 78899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 043969 96 LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (300)
+++|...++++.... +.+..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++.
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999998874 4567889999999999999999999999998863 4444444455566777999999999988
Q ss_pred HHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043969 176 MANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP---NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCN 252 (300)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (300)
..... +++... ..++..+...++.++|...+.+..+..... +..++..+...|...|++++|...+++..+. .
T Consensus 170 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~ 245 (275)
T 1xnf_A 170 HFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--N 245 (275)
T ss_dssp HHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--C
Confidence 77652 333333 447777788889999999999887642210 1578889999999999999999999999975 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043969 253 PNFLVYNTLVSNLRNAGKLAEAHEVI 278 (300)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~a~~~~ 278 (300)
|+. +.....++...|++++|++.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 432 223355677888999888766
No 33
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=3.1e-15 Score=115.72 Aligned_cols=222 Identities=11% Similarity=0.017 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 043969 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR----LGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121 (300)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (300)
.++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 355555566666666666666666666532 34555556666666 666666666666666553 45556666
Q ss_pred HHHHhc----CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCccccHHHHHH
Q 043969 122 LHVLGK----GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR----AGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193 (300)
Q Consensus 122 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (300)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 666666 666666666666666653 45556666666666 666777777766666654 3445555666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 194 SYIA----AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCM----AGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 194 ~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
.+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 6665 667777777777766653 45566666666666 677777777777766653 245556666666
Q ss_pred Hh----cCCHHHHHHHHHHHHHcC
Q 043969 266 RN----AGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 266 ~~----~g~~~~a~~~~~~~~~~~ 285 (300)
.. .+++++|.+.+++..+.|
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 66 677777777777777666
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.5e-18 Score=136.39 Aligned_cols=235 Identities=14% Similarity=0.134 Sum_probs=108.6
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
+++.+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 44569999999999999999999999763 56669999999999999999999988777664 44678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (300)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999988874 377789999999999999999999999976 47899999999999999
Q ss_pred HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
+|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++...
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999988 277899999999999999999966555432 244445578899999999999999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHH
Q 043969 248 SRGCNPNFLVYNTLVSNLRNA--GKLAEAHEVI 278 (300)
Q Consensus 248 ~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~ 278 (300)
... +-....|..+..+|++- ++..+.++.|
T Consensus 235 ~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 653 33455666665555443 4455555444
No 35
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=4.8e-15 Score=114.62 Aligned_cols=225 Identities=9% Similarity=-0.078 Sum_probs=197.4
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHc----cCcHHHHHHHHHHhhhCCCCCCHhhH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG----IRQYKLIEWVYQQMSDEGYAPDILTY 83 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (300)
-++.++..+...+...|++++|++.|.+.... -+...+..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 36677888889999999999999999998773 344578889999999 999999999999999886 67888
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHhhHHH
Q 043969 84 NIVMCAKYR----LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK----GDKPLAALNLLNHMKEVGFDPSVLHFTT 155 (300)
Q Consensus 84 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (300)
..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 889999999 999999999999998875 77888899999998 999999999999999875 5567778
Q ss_pred HHHHHHh----CCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043969 156 LMDGLSR----AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA----AGELEKAQDLFDGMITKGQLPNVFTYNSMI 227 (300)
Q Consensus 156 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 227 (300)
+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888 999999999999998874 55778888899999 999999999999999874 367888889
Q ss_pred HHHhc----cCCHHHHHHHHHHHHHCC
Q 043969 228 RGFCM----AGKFDEACTMMKEMESRG 250 (300)
Q Consensus 228 ~~~~~----~~~~~~a~~~~~~~~~~~ 250 (300)
..|.. .+++++|.+.+++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99998 999999999999999875
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.8e-15 Score=115.49 Aligned_cols=200 Identities=12% Similarity=-0.047 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 043969 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL 125 (300)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (300)
..|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3566666677777777777777777766532 255666666677777777777777777666553 33555666666666
Q ss_pred hcCCChHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHH
Q 043969 126 GKGDKPLAALNLLNHMKEVGFDP-SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKA 204 (300)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (300)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66777777777776666522222 34555666666666666666666666665542 22345566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 205 QDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666665542 234555666666666666666666666666654
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=6.9e-16 Score=119.15 Aligned_cols=234 Identities=11% Similarity=0.054 Sum_probs=127.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHH
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD--FHTYNILLHVL 125 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 125 (300)
+......+...|++++|+..|++..+..+. +...+..+...+...|++++|...+++.......++ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455555666666666666666555322 344555555566666666666666666655221111 12255556666
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHH
Q 043969 126 GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQ 205 (300)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 205 (300)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 2344556666666666666666666666665541 223344444442333344666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 043969 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGK---FDEACTMMKEMESRG-CNPN------FLVYNTLVSNLRNAGKLAEAH 275 (300)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~ 275 (300)
..|+++.+... .+...+..+..++...|+ +++|...+++..+.. -.|+ ...+..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66666665422 235555555666665555 555666666555421 1122 134555666666667777777
Q ss_pred HHHHHHHHcC
Q 043969 276 EVIRHMVEKG 285 (300)
Q Consensus 276 ~~~~~~~~~~ 285 (300)
+.++++.+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 7776666554
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=1.6e-15 Score=115.70 Aligned_cols=202 Identities=9% Similarity=-0.045 Sum_probs=176.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 043969 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159 (300)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (300)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888889999999999999999998764 4578889999999999999999999999998874 4467888999999
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 043969 160 LSRAGNLDACKYFFDEMANKGCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE 238 (300)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (300)
+...|++++|...++.+.+.+..| +...+..+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998732334 566788889999999999999999999988643 368889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 239 ACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
|...++++.+.. +.+...+..+...+...|+.++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998753 4567788888899999999999999999998876
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=3.1e-15 Score=111.90 Aligned_cols=200 Identities=9% Similarity=0.011 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 043969 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL 125 (300)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (300)
..+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.... +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3556666666666666666666666665432 245566666666666666666666666665543 33455566666666
Q ss_pred hcC-CChHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHH
Q 043969 126 GKG-DKPLAALNLLNHMKEVGFDP-SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK 203 (300)
Q Consensus 126 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 203 (300)
... |++++|...++++.+.+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 666 66666666666666521122 23455566666666666666666666665542 2234555566666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666665543213455555555666666666666666666554
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=1.7e-15 Score=122.09 Aligned_cols=242 Identities=10% Similarity=0.053 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGK-LDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
..|..+...+...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..++++.... +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 36778888888889999999999998887543 67788888888888886 999999999888775 4467788888888
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHh-cCCHHH
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA-AGELEK 203 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~ 203 (300)
+...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++.+.+.. +-+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 888999999999999988874 4467788888888889999999999999888764 2366788888888888 555466
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------
Q 043969 204 A-----QDLFDGMITKGQLPNVFTYNSMIRGFCMAG--KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAG------- 269 (300)
Q Consensus 204 a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------- 269 (300)
| +..+++..+.... +...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 5778887776433 6778888888888877 688888888887 32 2345677788888887764
Q ss_pred --CHHHHHHHHHHH-HHcC-----hHHHHHHHh
Q 043969 270 --KLAEAHEVIRHM-VEKG-----KYIHLVSKF 294 (300)
Q Consensus 270 --~~~~a~~~~~~~-~~~~-----~~~~l~~~~ 294 (300)
..++|.++++++ .+.+ .|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 358899999998 6655 555444443
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=4.3e-15 Score=111.18 Aligned_cols=204 Identities=10% Similarity=-0.032 Sum_probs=175.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (300)
+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 56778888999999999999999999998764 4567889999999999999999999999998874 456778899999
Q ss_pred HHHhC-CCHHHHHHHHHHHHhCCCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 043969 159 GLSRA-GNLDACKYFFDEMANKGCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236 (300)
Q Consensus 159 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (300)
.+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+... .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998732233 356788899999999999999999999988643 3688899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 237 DEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
++|...+++..+.....+...+..+...+...|+.+.|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999886321467778888888899999999999999998655
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=1.2e-15 Score=117.85 Aligned_cols=225 Identities=11% Similarity=-0.042 Sum_probs=184.0
Q ss_pred HHccCcHHHHHHHHHHhhhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCCh
Q 043969 55 LLGIRQYKLIEWVYQQMSDEGYA---PDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKP 131 (300)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (300)
....|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568899999999999986421 246678888999999999999999999998875 45788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 132 LAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (300)
++|...+++..+.. +.+...+..+...+...|++++|...++.+.+. .|+.......+..+...|++++|...+.+.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999873 446788999999999999999999999999876 455555555556667789999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 212 ITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCN--P-NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 212 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.... +++...+. ++..+...++.++|...+++..+.... | +...+..+...+...|++++|...++++++.+
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7753 33444444 777788888999999999988764211 1 15778889999999999999999999999876
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=7.8e-16 Score=118.86 Aligned_cols=249 Identities=9% Similarity=-0.054 Sum_probs=194.5
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC--HhhHHHHH
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD--ILTYNIVM 87 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 87 (300)
+..+......+...|++++|++.+++..... +.+...+..+...+...|++++|.+.++++.+.+..|+ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667788889999999999999988764 33444888999999999999999999999998532222 23488889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (300)
..+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+. .+.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 456788999999999999999999999999886 3446667777773444456999
Q ss_pred HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHhccCCHH
Q 043969 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE---LEKAQDLFDGMITKG-QLPN------VFTYNSMIRGFCMAGKFD 237 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~~~~~ 237 (300)
+|...|+...+.. +.+...+..+..++...|+ +++|...+++..+.. ..|+ ..+|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998863 2346677778888888888 888998888877641 1133 257888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 238 EACTMMKEMESRGCNPNFLVYNTLVS 263 (300)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (300)
+|.+.+++..+.. +-+......+..
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 9999999999863 223444444433
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=6.7e-16 Score=117.11 Aligned_cols=200 Identities=11% Similarity=0.036 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
...|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 335666777777777888888777777765422 56677777777777788888888777776653 3456667777777
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHH
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKA 204 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (300)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777653 3455666777777777777777777777776552 23455666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 205 QDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
...++++.+... .+..++..+..+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777766532 35666777777777777777777777777664
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=5.9e-16 Score=117.42 Aligned_cols=213 Identities=16% Similarity=0.106 Sum_probs=163.9
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
.+...|..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...++++.+.... +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 345667778888899999999999999987753 445678999999999999999999999999887533 788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (300)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998775 5578889999999999999999999999998873 456778889999999999999
Q ss_pred HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043969 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 226 (300)
+|...++...+.. +.+..++..+..++...|++++|...++++.+.... +...+..+
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHH
Confidence 9999999988763 345778899999999999999999999999886432 44444433
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=4.6e-15 Score=119.63 Aligned_cols=248 Identities=6% Similarity=-0.001 Sum_probs=203.6
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCc-HHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQ-YKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
...|..+...+.+.|++++|++.+++....+ +-+...|+.+..++...|+ +++|+..|+++++..+. +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567888888899999999999999988874 3456689999999999997 99999999999998654 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh-CCCHH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR-AGNLD 167 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 167 (300)
++...|++++|+..++++.+.. +-+...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998875 5578899999999999999999999999999974 4477889999999998 66657
Q ss_pred HH-----HHHHHHHHhCCCCCccccHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------
Q 043969 168 AC-----KYFFDEMANKGCMPDVVCYTVMITSYIAAG--ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG------ 234 (300)
Q Consensus 168 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------ 234 (300)
+| +..++...... +-+...|..+...+...| ++++|++.+.++ +. ...+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47788887753 235678888888888888 689999999988 43 3346788889999998874
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCCH-HHHHHHHHHHH
Q 043969 235 ---KFDEACTMMKEM-ESRGCNPNF-LVYNTLVSNLR 266 (300)
Q Consensus 235 ---~~~~a~~~~~~~-~~~~~~~~~-~~~~~li~~~~ 266 (300)
..++|.++++++ .+. .|.. ..|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999998 553 4544 44555555443
No 47
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=4.9e-13 Score=112.13 Aligned_cols=256 Identities=12% Similarity=0.020 Sum_probs=173.4
Q ss_pred chHHHHHHHHHhhc----cccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHc----cCcHHHHHHHHHHhhhCCCCCCH
Q 043969 9 TARTFNILICTCGE----VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG----IRQYKLIEWVYQQMSDEGYAPDI 80 (300)
Q Consensus 9 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (300)
++..+..+...|.. .+++++|+++|.+....+ +...+..+...+.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555556666655 678888888888776643 34466777777777 778888888888887765 55
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHhh
Q 043969 81 LTYNIVMCAKYR----LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK----GDKPLAALNLLNHMKEVGFDPSVLH 152 (300)
Q Consensus 81 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (300)
..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 666667777776 678888888888877664 45666666666665 677888888888777754 4566
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043969 153 FTTLMDGLSR----AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA----AGELEKAQDLFDGMITKGQLPNVFTYN 224 (300)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (300)
+..+...|.. .++.++|...|+...+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666667766 677777777777776654 44556666666665 667777777777776653 445555
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcC
Q 043969 225 SMIRGFCM----AGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNA-----GKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 225 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~ 285 (300)
.+...|.. .+++++|...+++..+.| +...+..+...|... ++.++|...+++..+.|
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 56666655 667777777777766543 344555555666555 67777777777776665
No 48
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=4.4e-13 Score=112.42 Aligned_cols=258 Identities=11% Similarity=0.051 Sum_probs=130.6
Q ss_pred hHHHHHHHHHhhc----cccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHc----cCcHHHHHHHHHHhhhCCCCCCHh
Q 043969 10 ARTFNILICTCGE----VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG----IRQYKLIEWVYQQMSDEGYAPDIL 81 (300)
Q Consensus 10 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 81 (300)
+..+..|...|.. .++.++|+++|++....+ +...+..+...+.. .+++++|...|++..+.| +..
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 148 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDS 148 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3444445555554 566666666666655433 33344555555555 556666666666665554 344
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHhhH
Q 043969 82 TYNIVMCAKYR----LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK----GDKPLAALNLLNHMKEVGFDPSVLHF 153 (300)
Q Consensus 82 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (300)
.+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +...+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 222 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQ 222 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHH
Confidence 55555555554 456666666666655543 44455555555544 555555555555555443 23334
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHhCCCC---------------------------------CccccHHHHHHHHH
Q 043969 154 TTLMDGLSR----AGNLDACKYFFDEMANKGCM---------------------------------PDVVCYTVMITSYI 196 (300)
Q Consensus 154 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~li~~~~ 196 (300)
..+...|.. .+++++|...|+...+.+.. -+...+..+...|.
T Consensus 223 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYD 302 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444443 44455555555444443210 02233334444444
Q ss_pred hc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 043969 197 AA-----GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG---KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRN- 267 (300)
Q Consensus 197 ~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 267 (300)
.. +++++|...|++..+.+ +...+..+...|...| ++++|.+.+++..+.| +...+..+...|..
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQG 376 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 43 45555555555544442 3334444444444433 4555555555555442 34445555555555
Q ss_pred ---cCCHHHHHHHHHHHHHcC
Q 043969 268 ---AGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 268 ---~g~~~~a~~~~~~~~~~~ 285 (300)
.+++++|.+.|++..+.|
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHhCC
Confidence 556666666666665555
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.2e-15 Score=124.65 Aligned_cols=277 Identities=13% Similarity=0.036 Sum_probs=211.2
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcC----HHHHHHHHHHHHccCcHHHHHHHHHHhhhC----CCCC
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPF----KNSYNAILHALLGIRQYKLIEWVYQQMSDE----GYAP 78 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 78 (300)
.+....+......+...|++++|...|++....+. .+ ...|..+...+...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34556677778889999999999999999887642 22 347888999999999999999999987643 2122
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHhcCCC--------------------hH
Q 043969 79 -DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF-SPD----FHTYNILLHVLGKGDK--------------------PL 132 (300)
Q Consensus 79 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~ 132 (300)
...++..+...+...|++++|...+++...... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 255677888899999999999999988754310 011 3477888888999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCc----cccHHHHHHHHHhcCCHH
Q 043969 133 AALNLLNHMKEV----GFDP-SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC-MPD----VVCYTVMITSYIAAGELE 202 (300)
Q Consensus 133 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~ 202 (300)
+|...+++..+. +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876542 1111 235678888999999999999999998865310 111 237888899999999999
Q ss_pred HHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 043969 203 KAQDLFDGMITKGQL-PN----VFTYNSMIRGFCMAGKFDEACTMMKEMESR----GCNP-NFLVYNTLVSNLRNAGKLA 272 (300)
Q Consensus 203 ~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~ 272 (300)
+|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999987653110 11 567888999999999999999999988753 1111 1457778888999999999
Q ss_pred HHHHHHHHHHHc
Q 043969 273 EAHEVIRHMVEK 284 (300)
Q Consensus 273 ~a~~~~~~~~~~ 284 (300)
+|.+.+++..+.
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=4.9e-16 Score=127.31 Aligned_cols=274 Identities=12% Similarity=0.001 Sum_probs=209.7
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCH----HHHHHHHHHHHccCcHHHHHHHHHHhhhC----CC-CCCHh
Q 043969 11 RTFNILICTCGEVGLARKVVERFIKSKLFNFRPFK----NSYNAILHALLGIRQYKLIEWVYQQMSDE----GY-APDIL 81 (300)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 81 (300)
..+..+...+...|++++|+..+++....+. .+. ..|..+...+...|++++|...+++..+. +. +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3445566778889999999999999887642 222 47888999999999999999999988753 11 22456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHhHHHHHHHHHhcCCC-----------------hHHHHHHHH
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRS----G-FSPDFHTYNILLHVLGKGDK-----------------PLAALNLLN 139 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 139 (300)
++..+...+...|++++|...+++.... + .+....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7788889999999999999999887543 1 11234577888889999999 999999988
Q ss_pred HHHHc----CC-CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-Cc----cccHHHHHHHHHhcCCHHHHHHHHH
Q 043969 140 HMKEV----GF-DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM-PD----VVCYTVMITSYIAAGELEKAQDLFD 209 (300)
Q Consensus 140 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~ 209 (300)
+..+. +. +.....+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 86542 11 112357788889999999999999999988654110 11 2378888999999999999999999
Q ss_pred HHHHCCCC-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043969 210 GMITKGQL-----PNVFTYNSMIRGFCMAGKFDEACTMMKEMESR----GCN-PNFLVYNTLVSNLRNAGKLAEAHEVIR 279 (300)
Q Consensus 210 ~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 279 (300)
+..+.... ....++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 87754110 12567888999999999999999999988753 111 113477788889999999999999999
Q ss_pred HHHHcC
Q 043969 280 HMVEKG 285 (300)
Q Consensus 280 ~~~~~~ 285 (300)
+..+..
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=9.1e-16 Score=121.82 Aligned_cols=273 Identities=13% Similarity=0.033 Sum_probs=206.5
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcC----HHHHHHHHHHHHccCcHHHHHHHHHHhhhC----CCCC-CHh
Q 043969 11 RTFNILICTCGEVGLARKVVERFIKSKLFNFRPF----KNSYNAILHALLGIRQYKLIEWVYQQMSDE----GYAP-DIL 81 (300)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 81 (300)
..+......+...|++++|...+++....+. .+ ...+..+...+...|++++|.+.+++..+. +..| ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566778889999999999999887642 22 357888999999999999999999887653 2121 355
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHhcCCC--------------------hHHHHH
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGF-SPD----FHTYNILLHVLGKGDK--------------------PLAALN 136 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 136 (300)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888899999999999999988754310 112 3377788888999999 999999
Q ss_pred HHHHHHHc----CCC-CcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC----C-CCccccHHHHHHHHHhcCCHHHHHH
Q 043969 137 LLNHMKEV----GFD-PSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG----C-MPDVVCYTVMITSYIAAGELEKAQD 206 (300)
Q Consensus 137 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~a~~ 206 (300)
.+++.... +.. .....+..+...+...|++++|...++...+.. . .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98876542 111 123467788889999999999999999876431 1 1112378888899999999999999
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 043969 207 LFDGMITKGQL-PN----VFTYNSMIRGFCMAGKFDEACTMMKEMESR----GCN-PNFLVYNTLVSNLRNAGKLAEAHE 276 (300)
Q Consensus 207 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~ 276 (300)
.+++..+.... ++ ..++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99987653111 11 567888899999999999999999988753 111 113467788889999999999999
Q ss_pred HHHHHHHc
Q 043969 277 VIRHMVEK 284 (300)
Q Consensus 277 ~~~~~~~~ 284 (300)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998864
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=3.1e-13 Score=106.36 Aligned_cols=184 Identities=11% Similarity=0.077 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-Hh-hHHHHHHHHHhCCCHHHHHHHHH
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPS-VL-HFTTLMDGLSRAGNLDACKYFFD 174 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~ 174 (300)
++|..+|++....-.+.+...|..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555555554211223345555555555555555555555555543 222 22 45555555555555555555555
Q ss_pred HHHhCCCCCccccHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CC
Q 043969 175 EMANKGCMPDVVCYTVMITSYI-AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRG-CN 252 (300)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 252 (300)
...+.. +++...|........ ..|++++|..+|++..+... -+...|..++..+.+.|++++|..+|++..... ++
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 555432 122222322222111 14566666666655554421 245555555555555666666666666655542 23
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 253 P--NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 253 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
| ....|..++....+.|+.+.|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 2344555555555556666666666555543
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.64 E-value=2.5e-14 Score=119.23 Aligned_cols=216 Identities=9% Similarity=-0.068 Sum_probs=145.5
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHH
Q 043969 60 QYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKL-DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLL 138 (300)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (300)
.++++...+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666655442 23566677777777777777 77777777776653 334667777777777777777777777
Q ss_pred HHHHHcCCCCcHhhHHHHHHHHHhC---------CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc--------CCH
Q 043969 139 NHMKEVGFDPSVLHFTTLMDGLSRA---------GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA--------GEL 201 (300)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~ 201 (300)
++..+. .|+...+..+...+... |++++|...+++..+.. +.+...|..+..++... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777765 34556667777777777 77777777777776653 23456677777777776 777
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043969 202 EKAQDLFDGMITKGQL--PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIR 279 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 279 (300)
++|+..|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777764220 266777777777777777777777777777642 2244566667777777777777776655
Q ss_pred HH
Q 043969 280 HM 281 (300)
Q Consensus 280 ~~ 281 (300)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=5.3e-13 Score=111.28 Aligned_cols=273 Identities=11% Similarity=0.023 Sum_probs=174.7
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhc-------CCCc-CHHHHHHHHHHHHccCcHHHHHHHHHHhhhC----
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLF-------NFRP-FKNSYNAILHALLGIRQYKLIEWVYQQMSDE---- 74 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 74 (300)
+.....||.|...+...|+.++|++.|.+.... ...| ...+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334667999999999999999999999876442 1123 3458999999999999999999999887652
Q ss_pred -C-CC-CCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH---HhcCCChHHHHHHHHHHHHcCC
Q 043969 75 -G-YA-PDILTYNIVMCAKYRL--GKLDQFHRLLDEMGRSGFSPDFHTYNILLHV---LGKGDKPLAALNLLNHMKEVGF 146 (300)
Q Consensus 75 -~-~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 146 (300)
+ .. ....++.....++... +++++|+..|++..+.. |.++..+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 11 1345666665555554 46899999999988764 3345555554444 445677788888888877763
Q ss_pred CCcHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043969 147 DPSVLHFTTLMDGLSR----AGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT 222 (300)
Q Consensus 147 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 222 (300)
+.+...+..+...+.. .++.++|...++...... +.+...+..+...+...|++++|...+++..+.... +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3345555555444433 456778888888777653 335567778888888888888888888887765322 4455
Q ss_pred HHHHHHHHhcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 223 YNSMIRGFCMA-------------------GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 223 ~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
+..+..+|... +.+++|...+++..+.. +.+...+..+...+...|++++|.+.|++.++
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 55444443221 12344555555555431 22334455555666666666666666666655
Q ss_pred c
Q 043969 284 K 284 (300)
Q Consensus 284 ~ 284 (300)
.
T Consensus 363 ~ 363 (472)
T 4g1t_A 363 K 363 (472)
T ss_dssp S
T ss_pred c
Confidence 4
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=7.1e-13 Score=104.29 Aligned_cols=235 Identities=10% Similarity=0.001 Sum_probs=183.7
Q ss_pred hHHHHHHHHHhhcc----ccH----HHHHHHHHHhhhcCCCcCHHHHHHHHHHHH-------ccCcH-------HHHHHH
Q 043969 10 ARTFNILICTCGEV----GLA----RKVVERFIKSKLFNFRPFKNSYNAILHALL-------GIRQY-------KLIEWV 67 (300)
Q Consensus 10 ~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~ 67 (300)
...|...+....+. ++. ++|...|++..... +-+...|..++..+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34566666554432 233 68889999987753 445568888877765 35775 899999
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-Hh-HHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 043969 68 YQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD-FH-TYNILLHVLGKGDKPLAALNLLNHMKEVG 145 (300)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (300)
|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+. .|+ .. +|..+...+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999998311236778999999999999999999999999885 454 44 79999999999999999999999998864
Q ss_pred CCCcHhhHHHHHHHH-HhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHH
Q 043969 146 FDPSVLHFTTLMDGL-SRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKG-QLP--NVF 221 (300)
Q Consensus 146 ~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~ 221 (300)
+.+...|....... ...|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..+.. ..| ...
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 33445554443332 23799999999999988762 3366788899999999999999999999999863 344 467
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.|..++....+.|+.++|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999875
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=3.6e-15 Score=117.21 Aligned_cols=238 Identities=14% Similarity=0.105 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDE-------GYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS------GF 111 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 111 (300)
..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 336777777777777777777777777662 12224556667777777778888887777776543 11
Q ss_pred -CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc------CC-CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----
Q 043969 112 -SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV------GF-DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK---- 179 (300)
Q Consensus 112 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 179 (300)
+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|...++...+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 223456677777788888888888888777653 21 223455677777888888888888888777553
Q ss_pred --CCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHhccCCHHHHHHH
Q 043969 180 --GCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMITK-------GQLPN-------VFTYNSMIRGFCMAGKFDEACTM 242 (300)
Q Consensus 180 --~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~~~~~~a~~~ 242 (300)
+..| ...++..+...+...|++++|...++++.+. ...+. ...+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 2346777778888888888888888877652 11111 11222233333344445555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 243 MKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
+...... .+....++..+..+|.+.|++++|.+++++.++
T Consensus 267 ~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6555543 123456778888889999999999999988775
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=2.1e-14 Score=119.76 Aligned_cols=214 Identities=7% Similarity=-0.088 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcH-HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043969 26 ARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY-KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLD 104 (300)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (300)
+++++..++...... +.+...+..+...+...|++ ++|++.|++..+..+. +...|..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666554432 34566888899999999999 9999999999887533 67889999999999999999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHhcC---------CChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC--------CCHH
Q 043969 105 EMGRSGFSPDFHTYNILLHVLGKG---------DKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA--------GNLD 167 (300)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 167 (300)
+..+. .|+...+..+...+... |++++|+..+++..+.. +.+...+..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98877 46778888888999998 99999999999998874 44677888888888888 8899
Q ss_pred HHHHHHHHHHhCCCC--CccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 168 ACKYFFDEMANKGCM--PDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
+|...|+...+.... .+...|..+..++...|++++|.+.|++..+... -+...+..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998876310 3677888999999999999999999999887643 3677788888888888988888876543
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=2.5e-13 Score=98.41 Aligned_cols=163 Identities=17% Similarity=0.088 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLS 161 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (300)
.|..+...+...|++++|++.|++..+.. |-+..++..+..++.+.|++++|...+....... +.+...+..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 34444444444444444444444443332 2233334444444444444444444444443331 122333333333444
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 043969 162 RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACT 241 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (300)
..++++.+...+....... +.+...+..+...+.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|.+
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHHH
Confidence 4444444444444443321 11233344444444444444444444444443321 133444444444444444444444
Q ss_pred HHHHHHH
Q 043969 242 MMKEMES 248 (300)
Q Consensus 242 ~~~~~~~ 248 (300)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=1.8e-13 Score=99.18 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 043969 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL 125 (300)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (300)
.+|..+...+...|++++|++.|++.++..+. +..++..+..++.+.|++++|...+....... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 35555555555555666665555555554322 45555555555555666666655555554443 23344455555555
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHH
Q 043969 126 GKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQ 205 (300)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 205 (300)
...++++.+...+.+..... +.+...+..+...+.+.|++++|...|+...+.. +.+..+|..+..++.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 55566666666555555542 3344455555555666666666666665555542 223445555566666666666666
Q ss_pred HHHHHHHH
Q 043969 206 DLFDGMIT 213 (300)
Q Consensus 206 ~~~~~~~~ 213 (300)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666555
No 60
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=9.3e-12 Score=105.40 Aligned_cols=148 Identities=7% Similarity=0.027 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc--ccHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 133 AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV--VCYTVMITSYIAAGELEKAQDLFDG 210 (300)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~ 210 (300)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+. .|+. ..|...+..+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55666665554212334555666666666666666666666666654 3332 3566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 211 MITKGQLPNVFTYNSMIRG-FCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 211 ~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
..+... .+...|...... +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++.++.
T Consensus 382 Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 382 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 665421 122222222111 234677777777777766641 234566777777777778888888888877765
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=1.6e-13 Score=111.47 Aligned_cols=231 Identities=5% Similarity=-0.052 Sum_probs=176.0
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C----CCCHhHHH
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDE----GYAP-DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSG--F----SPDFHTYN 119 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 119 (300)
....+...|++++|...+++..+. +-++ ...++..+...+...|++++|...+++..+.- . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999999764 2111 34678888899999999999999998875431 1 11235778
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHc----CCCC-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC-CCccccHH
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEV----GFDP-SVLHFTTLMDGLSRAGNLDACKYFFDEMANK----GC-MPDVVCYT 189 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 189 (300)
.+...|...|++++|...+++..+. +.++ ...++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988653 1111 1247888999999999999999999988762 22 33456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 043969 190 VMITSYIAAGELEKAQDLFDGMITK----GQLPNVFTYNSMIRGFCMAGK---FDEACTMMKEMESRGCNPN-FLVYNTL 261 (300)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l 261 (300)
.+...+.+.|++++|...+++..+. +.+.....+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999987653 111123346778888999999 77777777655 33333 4567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 043969 262 VSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 262 i~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
...|...|++++|.+.+++..+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999998763
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=114.57 Aligned_cols=242 Identities=12% Similarity=0.031 Sum_probs=171.6
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhc-------CCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhC-----
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLF-------NFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDE----- 74 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 74 (300)
|.+..++..+...+...|++++|...+.+.... ..+....++..+...+...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345677888899999999999999999987763 22334458889999999999999999999998764
Q ss_pred -CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc-
Q 043969 75 -GY-APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS------GF-SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV- 144 (300)
Q Consensus 75 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 144 (300)
+. +....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|...+++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 224567888889999999999999999988654 21 223456788889999999999999999998764
Q ss_pred -----CCCC-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCCccccHHHHH-------HHHHhcCCHHHH
Q 043969 145 -----GFDP-SVLHFTTLMDGLSRAGNLDACKYFFDEMANK-------GCMPDVVCYTVMI-------TSYIAAGELEKA 204 (300)
Q Consensus 145 -----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li-------~~~~~~~~~~~a 204 (300)
+..| ...++..+...+...|++++|...++...+. ...+......... ..+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 3457888899999999999999999998753 1222222222222 223333444555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 205 QDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
...+....... +.+..++..+..+|...|++++|.+.+++..+.
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55566555432 235677889999999999999999999988763
No 63
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=6.1e-13 Score=110.89 Aligned_cols=270 Identities=11% Similarity=-0.057 Sum_probs=180.9
Q ss_pred hHHHHHHHHHhhc--cccHHHHHHHHHHhhhcCCCcC-HHHHHHHHHH---HHccCcHHHHHHHHHHhhhCCCCCCHhhH
Q 043969 10 ARTFNILICTCGE--VGLARKVVERFIKSKLFNFRPF-KNSYNAILHA---LLGIRQYKLIEWVYQQMSDEGYAPDILTY 83 (300)
Q Consensus 10 ~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (300)
..++..+..++.. .+++++|++.|++....+ |+ ...+..+..+ +...++.++|++.+++..+..+. +..++
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~ 212 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLK 212 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHH
Confidence 3455555444443 457999999999988764 44 3344444444 44567778899999988876533 56666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 043969 84 NIVMCAKYR----LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159 (300)
Q Consensus 84 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (300)
..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|...+++..+.. |.+..++..+..+
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHH
Confidence 666555544 467789999999987765 5677889999999999999999999999998873 4455666666655
Q ss_pred HHhC-------------------CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043969 160 LSRA-------------------GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV 220 (300)
Q Consensus 160 ~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 220 (300)
|... +..+.|...++...+.. +.+...+..+...+...|++++|+..|++..+....|..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 5332 23567777787776653 346778899999999999999999999999886543322
Q ss_pred H--HHHHHHH-HHhccCCHHHHHHHHHHHHHCC-----------------------CCCCHHHHHHHHHHHHhcCCHHHH
Q 043969 221 F--TYNSMIR-GFCMAGKFDEACTMMKEMESRG-----------------------CNPNFLVYNTLVSNLRNAGKLAEA 274 (300)
Q Consensus 221 ~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~li~~~~~~g~~~~a 274 (300)
. .+..+.. .....|++++|+..+++..+.. -+.+..+|..+..+|...|++++|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1 2223322 3356789999999888876532 123456888899999999999999
Q ss_pred HHHHHHHHHcC
Q 043969 275 HEVIRHMVEKG 285 (300)
Q Consensus 275 ~~~~~~~~~~~ 285 (300)
.+.|++.++.+
T Consensus 450 ~~~y~kALe~~ 460 (472)
T 4g1t_A 450 DEDSERGLESG 460 (472)
T ss_dssp -----------
T ss_pred HHHHHHHHhcC
Confidence 99999999877
No 64
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.58 E-value=2.4e-12 Score=104.05 Aligned_cols=271 Identities=11% Similarity=0.003 Sum_probs=193.7
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhcCCCcCHH----HHHHHHHHHHccCcHHHHHHHHHHhhhCCCC-CC----HhhHH
Q 043969 14 NILICTCGEVGLARKVVERFIKSKLFNFRPFKN----SYNAILHALLGIRQYKLIEWVYQQMSDEGYA-PD----ILTYN 84 (300)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 84 (300)
......+...|++++|...+++........+.. +++.+...+...|++++|...+++..+.... ++ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455667899999999999876643222221 5667778888999999999999988763111 12 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC----CcHhhH
Q 043969 85 IVMCAKYRLGKLDQFHRLLDEMGRS----GFS--P-DFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFD----PSVLHF 153 (300)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 153 (300)
.+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... .....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6778889999999999999887543 222 2 2345667788899999999999999998765321 123567
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc-ccHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANKGCMPDV-VCYT-----VMITSYIAAGELEKAQDLFDGMITKGQLP---NVFTYN 224 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~ 224 (300)
..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77888899999999999999988654212221 1222 23344778999999999999887643221 133567
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 225 SMIRGFCMAGKFDEACTMMKEMESR----GCNPNF-LVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
.+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7888999999999999999988653 222222 35666777889999999999999988764
No 65
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=6.2e-12 Score=112.98 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=122.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
+|..+..++...|++++|.+.|.+. -|...|..++.++.+.|++++|.+.+...++.. +++...+.++.+|.
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence 4555555555555555555555332 144455555555555555555555555444432 22222233555555
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQD 206 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 206 (300)
+.+++++...+ .+ .++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+
T Consensus 1179 Kl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1179 KTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 55554432222 11 223344445556666666666666666553 256666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 043969 207 LFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG- 285 (300)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 285 (300)
.+++. .+..+|..+..+|...|+++.|...... +..+...+..++..|.+.|.+++|..+++..+...
T Consensus 1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 66654 1456666666666666666666655432 23356667788899999999999999998886543
Q ss_pred ----hHHHHHHHhhhh
Q 043969 286 ----KYIHLVSKFKRY 297 (300)
Q Consensus 286 ----~~~~l~~~~~~~ 297 (300)
.|..+...+.++
T Consensus 1312 aH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKF 1327 (1630)
T ss_pred hHhHHHHHHHHHHHhC
Confidence 554555555544
No 66
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.57 E-value=6.3e-12 Score=112.95 Aligned_cols=254 Identities=15% Similarity=0.146 Sum_probs=187.8
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
++.+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+... +....+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHH
Confidence 4778999999999999999999999775 4455888999999999999999999998887653 3333445888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDA 168 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (300)
+|++.+++++...+. . .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++
T Consensus 1176 aYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHH
Confidence 999999988644442 2 356677888999999999999999999985 378999999999999999
Q ss_pred HHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 169 CKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
|.+.++... +..+|..+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++....
T Consensus 1240 AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1240 AVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999998773 55778888888888888888877665432 3556677888888888888888888877665
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcC----------hHHHHHHHhhhhh
Q 043969 249 RGCNPNFLVYNTLVSNLRN--AGKLAEAHEVIRHMVEKG----------KYIHLVSKFKRYK 298 (300)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~----------~~~~l~~~~~~~~ 298 (300)
.. +-....|..+...|.+ -++..++.++|..-..-. .|..++..|.+++
T Consensus 1309 Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A 1309 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred cC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence 42 2233445455555543 344445555544333211 4666666665543
No 67
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.5e-11 Score=104.20 Aligned_cols=218 Identities=11% Similarity=0.065 Sum_probs=166.0
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHhHHHHHHHHHhcC
Q 043969 63 LIEWVYQQMSDEGYAPDILTYNIVMCAKYR-------LGKLD-------QFHRLLDEMGRSGFSPDFHTYNILLHVLGKG 128 (300)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (300)
.+..+|++++... +.+...|..+...+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3444555555442 2255666666666664 68877 8999999988632345688899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCc--HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHH-HHhcCCHHHHH
Q 043969 129 DKPLAALNLLNHMKEVGFDPS--VLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS-YIAAGELEKAQ 205 (300)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~ 205 (300)
|++++|..+|+++.+. +|+ ...|..++..+.+.|++++|..+|+...+.. +.+...|...... +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999986 443 2578888999999999999999999998762 1222333322222 34689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRG-CNPN--FLVYNTLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
.+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+++++.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988763 2368899999999999999999999999999863 2332 4477788888888999999999999988
Q ss_pred HcC
Q 043969 283 EKG 285 (300)
Q Consensus 283 ~~~ 285 (300)
+.-
T Consensus 491 ~~~ 493 (530)
T 2ooe_A 491 TAF 493 (530)
T ss_dssp HHT
T ss_pred HHC
Confidence 654
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=2.5e-13 Score=111.17 Aligned_cols=237 Identities=12% Similarity=0.026 Sum_probs=183.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHhH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI----LTYNIVMCAKYRLGKLDQFHRLLDEMGRS----GF-SPDFHT 117 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 117 (300)
.+..+...+...|++++|...|+++.+.... +. ..+..+...+...|++++|...+++.... +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 5667788889999999999999999987433 33 46788889999999999999999887543 11 223467
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHc----C-CCCcHhhHHHHHHHHHhCCC-----------------HHHHHHHHHH
Q 043969 118 YNILLHVLGKGDKPLAALNLLNHMKEV----G-FDPSVLHFTTLMDGLSRAGN-----------------LDACKYFFDE 175 (300)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 175 (300)
+..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888999999999999999987654 1 12234577888889999999 9999999887
Q ss_pred HHhC----CCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 176 MANK----GCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL-PN----VFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 176 ~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
..+. +..+ ....+..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 1111 2347788889999999999999999988764110 12 23788899999999999999999998
Q ss_pred HHHCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 246 MESRG--CN---PNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 246 ~~~~~--~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
..+.. .. ....++..+...+...|++++|.+.+++.++.
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87631 11 11467788888999999999999999998765
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=3.5e-12 Score=92.07 Aligned_cols=161 Identities=8% Similarity=-0.053 Sum_probs=76.5
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043969 13 FNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR 92 (300)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (300)
|..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 3444444555555555555555544332 22333445555555555555555555555544421 134444444555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHH
Q 043969 93 LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYF 172 (300)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (300)
.|++++|.+.++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544432 2334444444445555555555555555544432 22334444444444455555555555
Q ss_pred HHHHH
Q 043969 173 FDEMA 177 (300)
Q Consensus 173 ~~~~~ 177 (300)
++...
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.1e-12 Score=106.38 Aligned_cols=230 Identities=7% Similarity=-0.039 Sum_probs=174.7
Q ss_pred HHHHhhccccHHHHHHHHHHhhhc----CCCc-CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCC------CCCHhhHH
Q 043969 16 LICTCGEVGLARKVVERFIKSKLF----NFRP-FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGY------APDILTYN 84 (300)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 84 (300)
....+...|++++|++.+.+.... +-.+ ...+|..+...+...|+++.|...+++..+.-. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567889999999999997653 1122 234889999999999999999999998876311 11245778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHhcCCChHHHHHHHHHHHHc----CC-CCcHhhHH
Q 043969 85 IVMCAKYRLGKLDQFHRLLDEMGRSGF-SPD----FHTYNILLHVLGKGDKPLAALNLLNHMKEV----GF-DPSVLHFT 154 (300)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 154 (300)
.+...+...|++++|...+++..+..- .++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999988754310 011 247888899999999999999999998762 33 44467788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC----CCCCccccHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 043969 155 TLMDGLSRAGNLDACKYFFDEMANK----GCMPDVVCYTVMITSYIAAGE---LEKAQDLFDGMITKGQLP-NVFTYNSM 226 (300)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p-~~~~~~~l 226 (300)
.+...+.+.|++++|...++...+. +-+.....+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999987653 111122335667778888888 77788887765 2222 34567789
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 043969 227 IRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=5.2e-13 Score=105.80 Aligned_cols=237 Identities=11% Similarity=0.010 Sum_probs=180.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD----ILTYNIVMCAKYRLGKLDQFHRLLDEMGRS----GFS-PDFHT 117 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 117 (300)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 5566777888999999999999999987433 3 367778889999999999999999886432 211 12556
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCc----HhhHHHHHHHHHhCCC--------------------HHHHHHH
Q 043969 118 YNILLHVLGKGDKPLAALNLLNHMKEVGF-DPS----VLHFTTLMDGLSRAGN--------------------LDACKYF 172 (300)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 172 (300)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 78888899999999999999998765311 111 3477788889999999 9999999
Q ss_pred HHHHHhC----CCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHH
Q 043969 173 FDEMANK----GCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ-LPN----VFTYNSMIRGFCMAGKFDEACTM 242 (300)
Q Consensus 173 ~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~ 242 (300)
++..... +..+ ....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876532 1111 234678888899999999999999998765310 012 34788889999999999999999
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 243 MKEMESR----GCNP-NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 243 ~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
+++..+. +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9988753 1111 1456778888999999999999999998764
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=9.8e-13 Score=107.23 Aligned_cols=242 Identities=11% Similarity=0.004 Sum_probs=185.4
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 043969 42 RPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD----ILTYNIVMCAKYRLGKLDQFHRLLDEMGRS----GFSP 113 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 113 (300)
.+....+......+...|++++|...|+++.+.... + ..++..+...+...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344556778888999999999999999999987433 3 356788889999999999999999886432 2112
Q ss_pred -CHhHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCC-CcHhhHHHHHHHHHhCCC--------------------HH
Q 043969 114 -DFHTYNILLHVLGKGDKPLAALNLLNHMKEV----GFD-PSVLHFTTLMDGLSRAGN--------------------LD 167 (300)
Q Consensus 114 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~--------------------~~ 167 (300)
...++..+...+...|++++|...+++..+. +.+ ....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456788888999999999999999987653 111 113477888889999999 99
Q ss_pred HHHHHHHHHHhC----CCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHH
Q 043969 168 ACKYFFDEMANK----GCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQ-LPN----VFTYNSMIRGFCMAGKFD 237 (300)
Q Consensus 168 ~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~ 237 (300)
+|...++...+. +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999876542 1111 234678888999999999999999998875311 112 347888999999999999
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 238 EACTMMKEMESR----GCNPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 238 ~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
+|...+++..+. +..+. ..++..+...|...|++++|.+.+++..+.
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999988753 11111 457788888999999999999999998764
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=3.5e-12 Score=92.06 Aligned_cols=161 Identities=17% Similarity=0.052 Sum_probs=76.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.|..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 444555555555666666666655554422 244455555555555555555555555554442 233444444555555
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQD 206 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 206 (300)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544432 2233344444444444444444444444443331 1123333344444444444444444
Q ss_pred HHHHH
Q 043969 207 LFDGM 211 (300)
Q Consensus 207 ~~~~~ 211 (300)
.+++.
T Consensus 166 ~~~~~ 170 (186)
T 3as5_A 166 HFKKA 170 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=2.4e-12 Score=111.80 Aligned_cols=168 Identities=10% Similarity=-0.001 Sum_probs=144.3
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIV 86 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (300)
|-+...|+.|...+.+.|++++|++.|++..+.. +-+..+|+.+..++.+.|++++|++.|++.++.... +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3357789999999999999999999999988764 334568999999999999999999999999987543 68889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCH
Q 043969 87 MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (300)
..++.+.|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.. +-+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 999999999999999999988775 4567889999999999999999999999998874 44677889999999999999
Q ss_pred HHHHHHHHHHHh
Q 043969 167 DACKYFFDEMAN 178 (300)
Q Consensus 167 ~~a~~~~~~~~~ 178 (300)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=2.4e-11 Score=91.11 Aligned_cols=192 Identities=11% Similarity=0.044 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 043969 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL 125 (300)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (300)
..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 44555555555555555555555555554432444444445555555566666666665555443 22344555555555
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcH-------hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc---cccHHHHHHHH
Q 043969 126 GKGDKPLAALNLLNHMKEVGFDPSV-------LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD---VVCYTVMITSY 195 (300)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 195 (300)
...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...|+...+. .|+ ...+..+..++
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 56666666666666555542 2222 23455555566666666666666666554 232 33444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 196 IAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
...| ..+++++...+. .+...|..... ...+.+++|...+++..+.
T Consensus 164 ~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 3332 233333333321 13333333322 2345567777777776664
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=7.9e-13 Score=102.24 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=156.8
Q ss_pred HccCcHHHHHHHHHHhhhC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhHHHHH
Q 043969 56 LGIRQYKLIEWVYQQMSDE-------GYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS------GF-SPDFHTYNIL 121 (300)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 121 (300)
...|++++|+..+++..+. ..+....++..+...+...|++++|...+++.... +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3557777777777666552 22234667888899999999999999999998654 21 2235678889
Q ss_pred HHHHhcCCChHHHHHHHHHHHHc------C-CCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC------CCCC-cccc
Q 043969 122 LHVLGKGDKPLAALNLLNHMKEV------G-FDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK------GCMP-DVVC 187 (300)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 187 (300)
...+...|++++|...+++..+. . .+.....+..+...+...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1234567888999999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHhccCC------HHHHHHHHHHHHHCCCCC
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITK-------GQLP-NVFTYNSMIRGFCMAGK------FDEACTMMKEMESRGCNP 253 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~ 253 (300)
+..+...+...|++++|...+++..+. ...+ ....+..+...+...+. +..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998763 1112 22233333333333222 2222222222111 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 254 NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
...++..+...|...|++++|.+++++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888889999999999999999998753
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=8.5e-12 Score=101.04 Aligned_cols=231 Identities=10% Similarity=-0.015 Sum_probs=174.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCC-CC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC-CHhHH
Q 043969 50 AILHALLGIRQYKLIEWVYQQMSDEGY-AP----DILTYNIVMCAKYRLGKLDQFHRLLDEMGRS----GF-SP-DFHTY 118 (300)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~ 118 (300)
.....+...|++++|...|++..+... .+ ...++..+...+...|+++.|...+++.... +- .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556788999999999999876421 11 2457788889999999999999999887543 10 11 24567
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHc----CCC-CcHhhHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCccccH
Q 043969 119 NILLHVLGKGDKPLAALNLLNHMKEV----GFD-PSVLHFTTLMDGLSRAGNLDACKYFFDEMAN-----KGCMPDVVCY 188 (300)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 188 (300)
..+...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78889999999999999999987653 111 1235678888999999999999999999876 32 2336678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCCC-HHHHHH
Q 043969 189 TVMITSYIAAGELEKAQDLFDGMITKG----QLPNVFTYNSMIRGFCMAGK---FDEACTMMKEMESRGCNPN-FLVYNT 260 (300)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~ 260 (300)
..+...+.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|...+++ .+..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 889999999999999999999987642 22224456777777888888 7777777765 322333 346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 261 LVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 261 li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
+...|...|++++|.+.|++..+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888999999999999999998764
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=3.3e-12 Score=110.99 Aligned_cols=165 Identities=10% Similarity=0.010 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
..+|+.+...+.+.|++++|++.|++.++.... +..++..+..++.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 458999999999999999999999999987543 68899999999999999999999999998875 4467889999999
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHH
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKA 204 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (300)
+...|++++|++.|++..+.. +-+...++.+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999998874 4467889999999999999999999999998863 23567889999999999999999
Q ss_pred HHHHHHHHH
Q 043969 205 QDLFDGMIT 213 (300)
Q Consensus 205 ~~~~~~~~~ 213 (300)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887754
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.9e-11 Score=91.65 Aligned_cols=206 Identities=10% Similarity=-0.056 Sum_probs=158.0
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
.|+..+......+...|++++|++.|.+......+++...+..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678888899999999999999999999988764477777878999999999999999999999987544 677889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc---HhhHHHHH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDF-------HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPS---VLHFTTLM 157 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 157 (300)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998764 3345 45778888899999999999999999886 344 56677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043969 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 226 (300)
.+|... +...++.+...+ ..+...|.... ....+.+++|...+++..+.... +..+...+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 777544 344455555543 22333343333 34466789999999999886422 44444443
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.46 E-value=2.1e-12 Score=99.79 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=156.0
Q ss_pred hccccHHHHHHHHHHhhh-------cCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhC------CCCC-CHhhHHHH
Q 043969 21 GEVGLARKVVERFIKSKL-------FNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDE------GYAP-DILTYNIV 86 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 86 (300)
...|++++|+..+++... .+.+....++..+...+...|++++|...++++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345565555555555433 222334558899999999999999999999998865 2222 45678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc------CCCC-cHhh
Q 043969 87 MCAKYRLGKLDQFHRLLDEMGRS------G-FSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV------GFDP-SVLH 152 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 152 (300)
...+...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998654 1 1234567888899999999999999999998765 1122 3567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCCccc-cHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCC
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANK-------GCMPDVV-CYTVMITSYIAAGE------LEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~p 218 (300)
+..+...+...|++++|...+++..+. ...+... .+..+.......+. +..+...+...... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999988753 1223333 33333333333222 33333333322211 122
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 219 NVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
...++..+...|...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888999999999999999999988753
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=2.3e-11 Score=98.48 Aligned_cols=229 Identities=10% Similarity=-0.042 Sum_probs=170.5
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCC-CcC----HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCC-----CC-CHhhHHH
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNF-RPF----KNSYNAILHALLGIRQYKLIEWVYQQMSDEGY-----AP-DILTYNI 85 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ 85 (300)
...+...|++++|++.+.+...... .++ ..++..+...+...|+++.|...+++..+... .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445678999999999998765321 122 33788899999999999999999998875311 11 2457788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCcHhhHHHH
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRS----GFSP-DFHTYNILLHVLGKGDKPLAALNLLNHMKEV----GFDPSVLHFTTL 156 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 156 (300)
+...+...|++++|.+.+++..+. +-++ ...++..+..+|...|++++|...+++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 889999999999999999887543 1111 2346778888999999999999999998761 233346778889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCC----CccccHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 043969 157 MDGLSRAGNLDACKYFFDEMANKGCM----PDVVCYTVMITSYIAAGE---LEKAQDLFDGMITKGQLP-NVFTYNSMIR 228 (300)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~~ 228 (300)
...+.+.|++++|...++...+.... .....+..+...+...++ +++|+..+++. +..| ....+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 99999999999999999998764221 122345555566667777 77787777763 2222 2356678899
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 043969 229 GFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~ 248 (300)
.|...|++++|...+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=2.2e-10 Score=92.50 Aligned_cols=237 Identities=11% Similarity=0.017 Sum_probs=169.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHH
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDIL----TYNIVMCAKYRLGKLDQFHRLLDEMGRSGF-SPD----FHTY 118 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 118 (300)
.......+...|++++|...+++..+.....+.. +++.+...+...|++++|...+++.....- ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556678899999999999988764332322 456666788889999999999988754310 112 2235
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHc----CCC--C-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--C--cccc
Q 043969 119 NILLHVLGKGDKPLAALNLLNHMKEV----GFD--P-SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCM--P--DVVC 187 (300)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~ 187 (300)
..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777889999999999999987653 222 2 2345667888899999999999999988654221 1 2245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPN--VFTYN----SMIRGFCMAGKFDEACTMMKEMESRGCNP---NFLVY 258 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 258 (300)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999998875411111 12111 23345778999999999999887643221 12346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 259 NTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 259 ~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
..+...+...|++++|...+++..+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67778899999999999999988654
No 83
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=1.3e-10 Score=96.35 Aligned_cols=189 Identities=11% Similarity=0.077 Sum_probs=113.5
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcC----CChHHHHHHHHHHHHcCCCCcHhhHH
Q 043969 82 TYNIVMCAKYRLG---KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG----DKPLAALNLLNHMKEVGFDPSVLHFT 154 (300)
Q Consensus 82 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (300)
.+..+...|...| +.++|++.|++..+.| +++...+..+...|... +++++|+..|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 5555666666666 6667777777766665 34444445555555443 56677777777665 32 334444
Q ss_pred HHHHH-H--HhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043969 155 TLMDG-L--SRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAG-----ELEKAQDLFDGMITKGQLPNVFTYNSM 226 (300)
Q Consensus 155 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l 226 (300)
.+... + ...+++++|...|+...+.| +...+..+...|. .| ++++|...|++.. .| +...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 45444 3 44667777777777766654 4455555555555 44 6777777777665 32 55566666
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCh
Q 043969 227 IRGFCM----AGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRN----AGKLAEAHEVIRHMVEKGK 286 (300)
Q Consensus 227 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~ 286 (300)
...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|..+|+...+.|.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 666554 3367777777777766542 3344445555543 3467777777777777763
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=2.5e-11 Score=94.68 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=107.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCCCC-HhHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC-cHhhHHHHHH
Q 043969 89 AKYRLGKLDQFHRLLDEMGRS----GFSPD-FHTYNILLHVLGKGDKPLAALNLLNHMKEV----GFDP-SVLHFTTLMD 158 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 158 (300)
.|...|++++|...|.+.... |-+++ ..+|..+..+|.+.|++++|+..+++..+. |-.. ...+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666555332 21111 345666666666666666666666665442 1000 1235666666
Q ss_pred HHHhC-CCHHHHHHHHHHHHhCCCCC-c----cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 043969 159 GLSRA-GNLDACKYFFDEMANKGCMP-D----VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV------FTYNSM 226 (300)
Q Consensus 159 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l 226 (300)
.|... |++++|...|++..+..... + ..++..+...+.+.|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 77777777776665431000 0 234666667777777777777777776664322111 145666
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHHcC
Q 043969 227 IRGFCMAGKFDEACTMMKEMESRGCNPNF------LVYNTLVSNLR--NAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~ 285 (300)
..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|+..|+++.+.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 66677777777777777766643 2221 12333444443 3456777777776666555
No 85
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=2.3e-10 Score=94.80 Aligned_cols=254 Identities=12% Similarity=0.020 Sum_probs=169.4
Q ss_pred chHHHHHHHHHhhcc-----ccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHH---HHHHHHHHhhhCCCCCCH
Q 043969 9 TARTFNILICTCGEV-----GLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYK---LIEWVYQQMSDEGYAPDI 80 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~ 80 (300)
++..+..|...+... ++.++|+.+|++....+ .|+ .+..+...|...+..+ .+.+.+....+.| +.
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~ 141 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YP 141 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CT
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CH
Confidence 444555555533333 37888998888887755 233 5666777776655433 3445555555444 34
Q ss_pred hhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhHHHHHHHHHhcCC---ChHHHHHHHHHHHHcCCCCcHhhH
Q 043969 81 LTYNIVMCAKYRLGKLDQ----FHRLLDEMGRSGFSPDFHTYNILLHVLGKGD---KPLAALNLLNHMKEVGFDPSVLHF 153 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 153 (300)
.....+...|...+.+++ +..+++.... .++..+..|...|...| +.++|++.|++..+.| +++...+
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~ 216 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV 216 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH
Confidence 566667777777774444 4444443332 23347777888888888 8888888888888876 4455555
Q ss_pred HHHHHHHHhC----CCHHHHHHHHHHHHhCCCCCccccHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043969 154 TTLMDGLSRA----GNLDACKYFFDEMANKGCMPDVVCYTVMITS-Y--IAAGELEKAQDLFDGMITKGQLPNVFTYNSM 226 (300)
Q Consensus 154 ~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 226 (300)
..+...|... +++++|...|+... .| +...+..+... + ...+++++|...|++..+.| +...+..+
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 5666666554 68888988888877 33 55566666665 3 45788899999998888776 66777777
Q ss_pred HHHHhccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 043969 227 IRGFCMAG-----KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRN----AGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 227 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 285 (300)
...|. .| ++++|.+.|++.. . -+......+...|.. ..+.++|..+|++..+.|
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 77776 45 8888988888777 3 355666667766665 348889999998888887
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=4.5e-10 Score=86.57 Aligned_cols=241 Identities=10% Similarity=0.012 Sum_probs=144.6
Q ss_pred hccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043969 21 GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (300)
.-.|++..++.-..+.... .++ ..-.-+.+++...|++... ....|....+..+.. |...+ |+
T Consensus 24 fy~G~yq~~i~e~~~~~~~--~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~ 86 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKV--TDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NI 86 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCC--CCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CC
T ss_pred HHhhHHHHHHHHHHhcCcc--chH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HH
Confidence 3457787777754443221 222 2333345667666665531 112333334333333 22222 56
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGF-DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
..+++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6677666554 45555556777777888888888888887765542 235566777778888888888888888888765
Q ss_pred CCCC-----ccccHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-
Q 043969 180 GCMP-----DVVCYTVMITSYI--AAG--ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR- 249 (300)
Q Consensus 180 ~~~~-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 249 (300)
.| +..+...++.++. ..| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44 2455555555532 234 788888888887654 244333334444777888888888888765542
Q ss_pred ----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 250 ----G----CNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 250 ----~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+ -+-+..++..+|......|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 0 02345566455555555666 7778888887765
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.34 E-value=2e-10 Score=88.01 Aligned_cols=186 Identities=8% Similarity=-0.085 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhHH
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD---ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF--SPDFHTY 118 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 118 (300)
+...+......+.+.|++++|...|+++.+..+. + ...+..+..++.+.|++++|...|+.+.+..- +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3446666777777788888888888887776422 2 55666777777888888888888887766521 1123455
Q ss_pred HHHHHHHhc--------CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHH
Q 043969 119 NILLHVLGK--------GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTV 190 (300)
Q Consensus 119 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (300)
..+..++.. .|++++|+..|+++.+.. +.+......+.. +...... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 566666666 777777777777777652 212222211110 0000000 0111455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHC
Q 043969 191 MITSYIAAGELEKAQDLFDGMITKGQLP--NVFTYNSMIRGFCMA----------GKFDEACTMMKEMESR 249 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 249 (300)
+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6677778888888888888877653221 245666677777655 7788888888888764
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.33 E-value=2.2e-10 Score=89.29 Aligned_cols=207 Identities=11% Similarity=-0.005 Sum_probs=150.9
Q ss_pred cHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhC----CCCCC-HhhHHHHHHHHHhcCCHHHH
Q 043969 25 LARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDE----GYAPD-ILTYNIVMCAKYRLGKLDQF 99 (300)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 99 (300)
++++|.+.+.+. ...+...|++++|...|++..+. |.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466676666554 45677889999999999888653 32222 56888999999999999999
Q ss_pred HHHHHHHHhCCC---CCC--HhHHHHHHHHHhcC-CChHHHHHHHHHHHHcCCC---C-c-HhhHHHHHHHHHhCCCHHH
Q 043969 100 HRLLDEMGRSGF---SPD--FHTYNILLHVLGKG-DKPLAALNLLNHMKEVGFD---P-S-VLHFTTLMDGLSRAGNLDA 168 (300)
Q Consensus 100 ~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~---~-~-~~~~~~l~~~~~~~~~~~~ 168 (300)
+..+++...... .+. ..++..+...|... |++++|+..|++..+.... + . ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988754310 111 35788888999996 9999999999998764211 1 1 3568888999999999999
Q ss_pred HHHHHHHHHhCCCCCccc------cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh--ccC
Q 043969 169 CKYFFDEMANKGCMPDVV------CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV------FTYNSMIRGFC--MAG 234 (300)
Q Consensus 169 a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~~ 234 (300)
|...|+...+........ .|..+..++...|++++|...|++..+. .|+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999998864322221 4677788899999999999999998764 2321 23455666664 456
Q ss_pred CHHHHHHHHHHHHH
Q 043969 235 KFDEACTMMKEMES 248 (300)
Q Consensus 235 ~~~~a~~~~~~~~~ 248 (300)
++++|+..|+.+..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 78888888876654
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.33 E-value=2.5e-10 Score=87.40 Aligned_cols=185 Identities=9% Similarity=0.017 Sum_probs=129.9
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcC----HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCC-C-CHh
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPF----KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA-P-DIL 81 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~ 81 (300)
.+...+-.+...+.+.|++++|++.|++..... |+ ...+..+..++...|++++|...|++..+..+. | ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 356667777888899999999999999988764 33 458888999999999999999999999987432 2 245
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhh
Q 043969 82 TYNIVMCAKYR--------LGKLDQFHRLLDEMGRSGFSPD-FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLH 152 (300)
Q Consensus 82 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (300)
.+..+..++.. .|++++|...|+++.+.. |+ ......+. .+..+... -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHH
Confidence 67777788888 999999999999998763 43 22222211 11111110 1122
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--ccccHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANKGCMP--DVVCYTVMITSYIAA----------GELEKAQDLFDGMITK 214 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~ 214 (300)
+..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4556677778888888888888877652111 233566666666655 7788888888888775
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=3.6e-10 Score=76.73 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=66.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK 127 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (300)
|..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 444555555555555555555555544322 34455555555555555555555555554443 2334445555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMAN 178 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (300)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555442 22344444555555555555555555555443
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=3e-10 Score=77.13 Aligned_cols=131 Identities=12% Similarity=0.044 Sum_probs=113.6
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043969 11 RTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAK 90 (300)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (300)
..|..+...+...|++++|...++++...+ +.+...+..+...+...|++++|...++++.+.+. .+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 357778888999999999999999987764 34566888899999999999999999999988753 3677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 043969 91 YRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
...|++++|.+.++.+.... +.+..++..+...+...|++++|...++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999998764 456788889999999999999999999998875
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.30 E-value=1.5e-09 Score=80.41 Aligned_cols=176 Identities=15% Similarity=0.073 Sum_probs=92.6
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCC----ChHHHHHHH
Q 043969 63 LIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD----KPLAALNLL 138 (300)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 138 (300)
+|.+.|++..+.| ++..+..+...+...+++++|...|++..+.| ++..+..|...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555553 45556666666666666666666666665543 44555555555555 4 566666666
Q ss_pred HHHHHcCCCCcHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCC-CccccHHHHHHHHHh----cCCHHHHHHHHH
Q 043969 139 NHMKEVGFDPSVLHFTTLMDGLSR----AGNLDACKYFFDEMANKGCM-PDVVCYTVMITSYIA----AGELEKAQDLFD 209 (300)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 209 (300)
++..+.| +...+..+...|.. .+++++|...|+...+.+.. .+...+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 34445555555554 55666666666655554311 013444555555554 445555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHHHHCC
Q 043969 210 GMITKGQLPNVFTYNSMIRGFCMA-G-----KFDEACTMMKEMESRG 250 (300)
Q Consensus 210 ~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 250 (300)
+..+.+ .+...+..+...|... | ++++|...++...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 555441 1223344444444321 1 4555555555555443
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=1.5e-09 Score=83.66 Aligned_cols=183 Identities=10% Similarity=0.068 Sum_probs=138.4
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 043969 64 IEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF-SPDFHTYNILLHVLGKGDKPLAALNLLNHMK 142 (300)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (300)
++..|++....+ .++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+++.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888888765 45666667888999999999999999999876652 1367788899999999999999999999998
Q ss_pred HcCCCC-----cHhhHHHHHHHHH----hCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 143 EVGFDP-----SVLHFTTLMDGLS----RAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 143 ~~~~~~-----~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
+. .| +..+...++.++. ..++...|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 86 45 3555566665532 234899999999998765 35433344555588999999999999997665
Q ss_pred CC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043969 214 KG---------QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF 255 (300)
Q Consensus 214 ~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (300)
.. -+-+..+...+|......|+ +|.++++++.+. .|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 31 12366777567666666787 889999999985 4554
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.28 E-value=4e-10 Score=83.22 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=25.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMAN 178 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (300)
+..++.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...|+...+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444432 22334444444444444444444444444444
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.27 E-value=1.6e-09 Score=80.23 Aligned_cols=180 Identities=10% Similarity=-0.020 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC----CHHHHHHH
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG----NLDACKYF 172 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 172 (300)
.+|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 34677888887764 77888889999999999999999999999875 56677778888887 6 89999999
Q ss_pred HHHHHhCCCCCccccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHH
Q 043969 173 FDEMANKGCMPDVVCYTVMITSYIA----AGELEKAQDLFDGMITKGQL-PNVFTYNSMIRGFCM----AGKFDEACTMM 243 (300)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~~~~~~a~~~~ 243 (300)
|+...+.| +...+..+...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998775 56677888888877 88999999999999887531 026788889999988 88999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcChHH
Q 043969 244 KEMESRGCNPNFLVYNTLVSNLRNA-G-----KLAEAHEVIRHMVEKGKYI 288 (300)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~~~ 288 (300)
++..+. ..+...+..|...|... | +.++|..+|++..+.|...
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 999886 23455677777777653 3 8999999999999998433
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=6.8e-10 Score=81.95 Aligned_cols=137 Identities=9% Similarity=0.021 Sum_probs=79.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN 165 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (300)
+..++.+.|++++|+..+++..+.. |.+...+..+..++...|++++|+..|++..+.. |.+...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6666777777777777777766654 3456666777777777777777777777776653 3345566666666554443
Q ss_pred --HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 166 --LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIR 228 (300)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 228 (300)
.+.+...+..... ..|....+.....++...|++++|...|++..+. .|+......+.+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 2334444444332 1222223333444555667777777777777663 456554444333
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=3.4e-10 Score=98.54 Aligned_cols=173 Identities=10% Similarity=-0.042 Sum_probs=142.6
Q ss_pred HccCcHHHHHHHHHHhh--------hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc
Q 043969 56 LGIRQYKLIEWVYQQMS--------DEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK 127 (300)
Q Consensus 56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (300)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..++++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 443 3366788888899999999999999999998764 4577889999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHH
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDL 207 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 207 (300)
.|++++|+..|++..+.. +.+...+..+..++.+.|++++ ...|+...+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998874 4466788899999999999999 99999988763 33567889999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 043969 208 FDGMITKGQLPN-VFTYNSMIRGFCMAGK 235 (300)
Q Consensus 208 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 235 (300)
|++..+.. |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99987753 44 6677788888776554
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=2.1e-10 Score=99.82 Aligned_cols=173 Identities=8% Similarity=-0.027 Sum_probs=143.1
Q ss_pred hccccHHHHHHHHHHhh--------hcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043969 21 GEVGLARKVVERFIKSK--------LFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR 92 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (300)
...|++++|++.+++.. ... +.+...+..+..++...|++++|+..|+++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999987 332 344568889999999999999999999999987543 78889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHH
Q 043969 93 LGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYF 172 (300)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (300)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ ++.|++..+.. +.+...+..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998875 4467888999999999999999 99999998874 44677899999999999999999999
Q ss_pred HHHHHhCCCCCc-cccHHHHHHHHHhcCC
Q 043969 173 FDEMANKGCMPD-VVCYTVMITSYIAAGE 200 (300)
Q Consensus 173 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 200 (300)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9998875 343 5567777777655444
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=2.4e-10 Score=79.72 Aligned_cols=145 Identities=9% Similarity=-0.096 Sum_probs=100.0
Q ss_pred HHHHhhccccHHHHHHHHHHhhhcCCCcCH-HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 16 LICTCGEVGLARKVVERFIKSKLFNFRPFK-NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
|...+...|++++|++.+...... .|+. ..+..+...|.+.|++++|++.|++.++..+. +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 345566677888888888776553 3332 25666778888888888888888888876533 6778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHH-HHHHHHcCCCCcHhhHHHHHHHHHhCCC
Q 043969 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL-LNHMKEVGFDPSVLHFTTLMDGLSRAGN 165 (300)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (300)
++++|...|++..+.. +-+..++..+...+.+.|+.++|.+. +++..+.. |-++..|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888888888887764 44567778888888888887765554 46666652 3355666666666655553
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.21 E-value=1e-09 Score=86.16 Aligned_cols=223 Identities=8% Similarity=0.002 Sum_probs=129.5
Q ss_pred cccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHc-cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043969 23 VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLG-IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHR 101 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (300)
.|++++|.+++++..+... .. +.+ .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 5677888888877654311 10 111 35566666665543 345566677777777
Q ss_pred HHHHHHhC----CCCC-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC-cHhhHHHHHHHHHhCCCHHHHHH
Q 043969 102 LLDEMGRS----GFSP-DFHTYNILLHVLGKGDKPLAALNLLNHMKEV----GFDP-SVLHFTTLMDGLSRAGNLDACKY 171 (300)
Q Consensus 102 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 171 (300)
.+.+.... +-++ -..+|..+...|...|++++|+..+++..+. |-+. ...++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 76665332 1000 1335666667777777777777777765443 1111 13456666777777 88888877
Q ss_pred HHHHHHhCCCC---C--ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 043969 172 FFDEMANKGCM---P--DVVCYTVMITSYIAAGELEKAQDLFDGMITK----GQLPN-VFTYNSMIRGFCMAGKFDEACT 241 (300)
Q Consensus 172 ~~~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 241 (300)
.|++..+.... + ...++..+...+.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77776543100 0 1345667777778888888888888776653 11111 2255666666777788888888
Q ss_pred HHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 043969 242 MMKEMESRGCNPN------FLVYNTLVSNLRNAGKLAEAHE 276 (300)
Q Consensus 242 ~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~ 276 (300)
.|++.. . .|+ ......++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888777 3 221 12234444444 4566655544
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=3.7e-09 Score=79.02 Aligned_cols=202 Identities=9% Similarity=-0.030 Sum_probs=100.5
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhcCCC-cC-HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH--hhHHHHH
Q 043969 12 TFNILICTCGEVGLARKVVERFIKSKLFNFR-PF-KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI--LTYNIVM 87 (300)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 87 (300)
.+..+...+.+.|++++|+..|+++...... |. ...+..+..++.+.|++++|+..|+++.+..+.... ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3444445555566666666666665543211 11 124555555666666666666666666554322111 1222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (300)
.++...+.. .+ ..|..+...+...|++++|...|+++.+.. |-+..........
T Consensus 86 ~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l-------- 139 (225)
T 2yhc_A 86 LTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL-------- 139 (225)
T ss_dssp HHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH--------
T ss_pred HHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH--------
Confidence 333222110 00 011112222334567777777777777652 2222222211110
Q ss_pred HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP--NVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
..+...+. .....+...+.+.|++++|+..|+++.+..... ....+..+..++.+.|++++|.+.++.
T Consensus 140 --~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 140 --VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp --HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 00000000 011345667788888888888888888753221 125677788888888899888888888
Q ss_pred HHHC
Q 043969 246 MESR 249 (300)
Q Consensus 246 ~~~~ 249 (300)
+...
T Consensus 210 l~~~ 213 (225)
T 2yhc_A 210 IAAN 213 (225)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8775
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=4.2e-09 Score=78.67 Aligned_cols=183 Identities=11% Similarity=-0.017 Sum_probs=120.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH--hh
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD----FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV--LH 152 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 152 (300)
+...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|+..|+++.+....... ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 34556667778889999999999999988753 32 356777888899999999999999998876322111 13
Q ss_pred HHHHHHHHHh------------------CCCHHHHHHHHHHHHhCCCCCccc-cHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 153 FTTLMDGLSR------------------AGNLDACKYFFDEMANKGCMPDVV-CYTVMITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 153 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (300)
+..+..++.. .|++++|...|+.+.+. .|+.. .+...... ..+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH--
Confidence 4444444443 34555666666555544 23221 11111000 0000000
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 214 KGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN----FLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
......+...|.+.|++++|...|+++.+. .|+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011234567888999999999999999985 233 2567888899999999999999999988765
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=2.4e-08 Score=77.56 Aligned_cols=217 Identities=9% Similarity=0.020 Sum_probs=104.7
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH----hcC---CChH
Q 043969 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG--KLDQFHRLLDEMGRSGFSPDFHTYNILLHVL----GKG---DKPL 132 (300)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 132 (300)
++|+.+++.++..++. +..+|+.--..+...+ +++++++.++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3455555555544322 3444444444444444 5555555555554443 22333333332222 222 4555
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHH--HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC------HHHH
Q 043969 133 AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD--ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE------LEKA 204 (300)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~~a 204 (300)
+++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ +++..++.+.+... -|...|+.-...+.+.++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 5555555555542 334444444444444445544 55555555555432 244444444444444444 5566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 205 QDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDE-ACTMMKEMESRG--CNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 281 (300)
++.++++....+. |...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666665555333 55556555555555554222 333444443321 1224455555666666666666666666666
Q ss_pred HH
Q 043969 282 VE 283 (300)
Q Consensus 282 ~~ 283 (300)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=5.7e-08 Score=75.51 Aligned_cols=229 Identities=8% Similarity=0.004 Sum_probs=177.4
Q ss_pred hccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccC--cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH----Hhc-
Q 043969 21 GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR--QYKLIEWVYQQMSDEGYAPDILTYNIVMCAK----YRL- 93 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 93 (300)
.+....++|++.++.+...+ +-+...|+.--..+...+ ++++++..++.+....++ +..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33344578999999988874 333447888888888888 999999999999988655 666676555444 455
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChH--HHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC----
Q 043969 94 --GKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPL--AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN---- 165 (300)
Q Consensus 94 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 165 (300)
+++++++.+++.+.+.. +-+..+|+.-...+.+.|.++ ++++.++++.+.. +-+...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 78999999999998875 567888888888888888888 9999999999875 4477777776666667666
Q ss_pred --HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCHHHHH
Q 043969 166 --LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEK-AQDLFDGMITKG--QLPNVFTYNSMIRGFCMAGKFDEAC 240 (300)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~ 240 (300)
++++++.++.+.... +-|...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+..+|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 889999999888774 3477889888888888887444 556777665543 2347889999999999999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 043969 241 TMMKEMESRGCNPNF 255 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~ 255 (300)
++++.+.+. +.|..
T Consensus 279 ~~~~~l~~~-~Dpir 292 (306)
T 3dra_A 279 TVYDLLKSK-YNPIR 292 (306)
T ss_dssp HHHHHHHHT-TCGGG
T ss_pred HHHHHHHhc-cChHH
Confidence 999999863 34443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.18 E-value=7.9e-10 Score=79.29 Aligned_cols=78 Identities=9% Similarity=0.014 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-ccccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP-DVVCYTVMITSYIAAGELEKAQDLFDGMI 212 (300)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (300)
|...+++..+.. +.+...+..+...+...|++++|...|+.+.+....+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 444555544432 2234445555555555555555555555555442211 12345555555555555555555555443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=2.1e-09 Score=91.77 Aligned_cols=154 Identities=11% Similarity=-0.015 Sum_probs=117.0
Q ss_pred cccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043969 23 VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRL 102 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (300)
.|++++|.+.+++..... +.+...|..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 468889999998877653 334668899999999999999999999999987533 678889999999999999999999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC---CCHHHHHHHHHHHHhC
Q 043969 103 LDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA---GNLDACKYFFDEMANK 179 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (300)
+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|...+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998774 4567889999999999999999999999998874 44677888899999999 9999999999998876
Q ss_pred C
Q 043969 180 G 180 (300)
Q Consensus 180 ~ 180 (300)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=1.5e-09 Score=84.34 Aligned_cols=168 Identities=9% Similarity=-0.003 Sum_probs=131.9
Q ss_pred CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHH-
Q 043969 112 SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTV- 190 (300)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 190 (300)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++..... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4456667778888889999999999999998873 446678888899999999999999999988765 344332222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 043969 191 MITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCN-PNFLVYNTLVSNLRNAG 269 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 269 (300)
....+...++.++|...+++..+... .+...+..+...+...|++++|...++++.+.... .+...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22335677788888999988887643 37888999999999999999999999999886322 12567888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 043969 270 KLAEAHEVIRHMVE 283 (300)
Q Consensus 270 ~~~~a~~~~~~~~~ 283 (300)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999998887664
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=5.3e-10 Score=80.21 Aligned_cols=160 Identities=10% Similarity=0.032 Sum_probs=84.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHH-HHhc
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS-YIAA 198 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 198 (300)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...... |+...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 33444555555555555555554431 2234445555555555555555555555554331 222111111111 1111
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 043969 199 GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP-NFLVYNTLVSNLRNAGKLAEAHEV 277 (300)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 277 (300)
++..+|...+++..+... -+...+..+..++...|++++|...++++.+....+ +...+..+..++...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 122235666666665422 246667777777777777777777777776653221 244666677777777777777777
Q ss_pred HHHHHH
Q 043969 278 IRHMVE 283 (300)
Q Consensus 278 ~~~~~~ 283 (300)
|++.+.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=2.1e-09 Score=83.50 Aligned_cols=165 Identities=10% Similarity=-0.039 Sum_probs=99.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHH-HHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFT-TLM 157 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 157 (300)
+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44555556666667777777777777766553 3345566666677777777777777777665542 2332222 222
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCH
Q 043969 158 DGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL-PNVFTYNSMIRGFCMAGKF 236 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~ 236 (300)
..+...++.+.|...++...... +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23455566666666666666552 234556666677777777777777777776665322 1245666777777777777
Q ss_pred HHHHHHHHHHH
Q 043969 237 DEACTMMKEME 247 (300)
Q Consensus 237 ~~a~~~~~~~~ 247 (300)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77766666544
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=2.9e-09 Score=90.95 Aligned_cols=155 Identities=10% Similarity=-0.033 Sum_probs=119.0
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHH
Q 043969 58 IRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNL 137 (300)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (300)
.|++++|++.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876433 67889999999999999999999999998875 45678899999999999999999999
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 043969 138 LNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA---GELEKAQDLFDGMITK 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 214 (300)
+++..+.. +.+...+..+..++.+.|++++|...++...+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 4467889999999999999999999999998763 23567888899999999 9999999999999876
Q ss_pred CC
Q 043969 215 GQ 216 (300)
Q Consensus 215 ~~ 216 (300)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.12 E-value=6.5e-10 Score=77.47 Aligned_cols=144 Identities=8% Similarity=-0.068 Sum_probs=79.8
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCCh
Q 043969 52 LHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKP 131 (300)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (300)
...+...|++++|+..++....... -+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3344555666666666666554421 133445556666667777777777777666553 34556666666666677777
Q ss_pred HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHH-HHHHHhCCCCCccccHHHHHHHHHhcC
Q 043969 132 LAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYF-FDEMANKGCMPDVVCYTVMITSYIAAG 199 (300)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~ 199 (300)
++|+..|++..+.. +-+...+..+...|.+.|+.+++... ++...+.. +-+...|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 77777776666652 33455666666666666666544433 35554431 113334444444443333
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.12 E-value=1.2e-09 Score=85.79 Aligned_cols=200 Identities=11% Similarity=-0.020 Sum_probs=146.4
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHH
Q 043969 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALN 136 (300)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (300)
..|++++|.+++++..+.... . + +...+++++|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 457788899888887764211 1 0 11157888888888765 446778899999999
Q ss_pred HHHHHHHc----CCCC-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-ccccHHHHHHHHHhcCCHHHHHH
Q 043969 137 LLNHMKEV----GFDP-SVLHFTTLMDGLSRAGNLDACKYFFDEMANK----GCMP-DVVCYTVMITSYIAAGELEKAQD 206 (300)
Q Consensus 137 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~ 206 (300)
.|.+..+. +-++ ...+|+.+...|...|++++|...|+...+. |-.. ...++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887653 1111 1357888889999999999999999887543 2111 13567788888888 99999999
Q ss_pred HHHHHHHCCCC---C--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 043969 207 LFDGMITKGQL---P--NVFTYNSMIRGFCMAGKFDEACTMMKEMESR----GCNPN-FLVYNTLVSNLRNAGKLAEAHE 276 (300)
Q Consensus 207 ~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~ 276 (300)
.|++..+.... + ...++..+...|.+.|++++|+..+++..+. +..++ ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988754111 1 1467888999999999999999999998863 22121 2356666777888899999999
Q ss_pred HHHHHH
Q 043969 277 VIRHMV 282 (300)
Q Consensus 277 ~~~~~~ 282 (300)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999987
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=1.3e-07 Score=73.64 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=112.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCC-CCcH----hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-c----cccHHH
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEVGF-DPSV----LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP-D----VVCYTV 190 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 190 (300)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++...+..... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888776421 2221 123346666777778888888888887642221 2 125788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 043969 191 MITSYIAAGELEKAQDLFDGMITK-----GQLPN-VFTYNSMIRGFCMAGKFDEACTMMKEMESR----GCNPN-FLVYN 259 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 259 (300)
+..+|...|++++|...|+++.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887741 11112 346788888899999999999988877642 22222 56778
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHH
Q 043969 260 TLVSNLRNAG-KLAEAHEVIRHMVE 283 (300)
Q Consensus 260 ~li~~~~~~g-~~~~a~~~~~~~~~ 283 (300)
.+..++.+.| ++++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888888 46889888888765
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.07 E-value=1.6e-07 Score=73.06 Aligned_cols=164 Identities=8% Similarity=-0.051 Sum_probs=123.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-Cc----HhhHH
Q 043969 85 IVMCAKYRLGKLDQFHRLLDEMGRSGF-SPDF----HTYNILLHVLGKGDKPLAALNLLNHMKEVGFD-PS----VLHFT 154 (300)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 154 (300)
..+..+...|++++|..++++...... .|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778899999999999999876431 1221 13335667778888999999999999874322 22 23688
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC-----CCCCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 043969 155 TLMDGLSRAGNLDACKYFFDEMANK-----GCMPD-VVCYTVMITSYIAAGELEKAQDLFDGMITK----GQLPN-VFTY 223 (300)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~ 223 (300)
.+...|...|++++|...|+...+. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999998741 11222 347888999999999999999999987653 22222 6788
Q ss_pred HHHHHHHhccC-CHHHHHHHHHHHHH
Q 043969 224 NSMIRGFCMAG-KFDEACTMMKEMES 248 (300)
Q Consensus 224 ~~l~~~~~~~~-~~~~a~~~~~~~~~ 248 (300)
..+..+|...| ++++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999999 57999999888764
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=3.2e-08 Score=73.00 Aligned_cols=128 Identities=10% Similarity=-0.040 Sum_probs=96.7
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 043969 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKY 91 (300)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (300)
.+..+...+...|++++|++.+.+.. .|+...|..+...+...|++++|...|++..+... .+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34556667777888888888888763 45667888888888888888888888888877643 36677888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----------------hHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 043969 92 RLGKLDQFHRLLDEMGRSGFSPDF----------------HTYNILLHVLGKGDKPLAALNLLNHMKEVG 145 (300)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (300)
..|++++|...++...+.. +.+. ..+..+..++...|++++|...+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887653 2222 567777777888888888888888877653
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.03 E-value=5.4e-08 Score=71.76 Aligned_cols=128 Identities=7% Similarity=-0.116 Sum_probs=103.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566777888899999999998774 5577888888999999999999999999887764 456778888888999
Q ss_pred cCCChHHHHHHHHHHHHcCCC--------------C-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 127 KGDKPLAALNLLNHMKEVGFD--------------P-SVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
..|++++|...+++..+.... | ....+..+..++...|++++|...|+...+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999988875311 1 1256777888888889999999888888776
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.01 E-value=1.2e-07 Score=73.87 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH-----hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC---Cc--cc
Q 043969 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV-----LHFTTLMDGLSRAGNLDACKYFFDEMANKGCM---PD--VV 186 (300)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 186 (300)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++...+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566677778888888888777664322111 22334555667778888888888877643211 11 34
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CH
Q 043969 187 CYTVMITSYIAAGELEKAQDLFDGMIT---K-GQLP--NVFTYNSMIRGFCMAGKFDEACTMMKEMESR----GCNP-NF 255 (300)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 255 (300)
+++.+...|...|++++|...+++..+ . +..+ ...++..+...|...|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677888888888888888888888762 2 1111 1257788888888999999999888887653 1111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 043969 256 LVYNTLVSNLRNAGKLAEA-HEVIRHMVE 283 (300)
Q Consensus 256 ~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 283 (300)
.+|..+..+|.+.|+.++| ...+++..+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6777888888888998888 777777653
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=2e-07 Score=72.47 Aligned_cols=166 Identities=7% Similarity=-0.062 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCC---CCc--Hh
Q 043969 82 TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD-----FHTYNILLHVLGKGDKPLAALNLLNHMKEVGF---DPS--VL 151 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 151 (300)
.+...+..+...|++++|.+.+....+.....+ ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455566666777777666666554421111 11233445556666777777777776654311 111 33
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHh---C-CCCC--ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMAN---K-GCMP--DVVCYTVMITSYIAAGELEKAQDLFDGMITK----GQLP-NV 220 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~ 220 (300)
+++.+...|...|++++|...|+...+ . +..+ ...++..+...|...|++++|+..+++..+. +..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 666777777777777777777776652 1 1111 1146667777777777777777777766542 1111 14
Q ss_pred HHHHHHHHHHhccCCHHHH-HHHHHHHH
Q 043969 221 FTYNSMIRGFCMAGKFDEA-CTMMKEME 247 (300)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 247 (300)
.+|..+..+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5677777777777777777 66566554
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=2.7e-08 Score=66.90 Aligned_cols=96 Identities=11% Similarity=-0.029 Sum_probs=66.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.+......+.+.|++++|++.|++.++..+. +...|..+..++.+.|++++|+..+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 5666677777777777777777777665432 56667777777777777777777777766654 345666777777777
Q ss_pred cCCChHHHHHHHHHHHHc
Q 043969 127 KGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (300)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777777665
No 120
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.98 E-value=9.4e-08 Score=82.43 Aligned_cols=221 Identities=9% Similarity=0.003 Sum_probs=165.5
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHH
Q 043969 62 KLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH-RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNH 140 (300)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (300)
+.+..+|++++..- +-....|...+..+...|+.++|. ++++..... +|.+...|...+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34566787777653 336778888888888889988996 999998864 355666778888888899999999999999
Q ss_pred HHHcCC---------CC------------cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc-
Q 043969 141 MKEVGF---------DP------------SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA- 198 (300)
Q Consensus 141 ~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 198 (300)
+.+... .| ....|...+....+.|..+.|..+|....+....+....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 876410 12 12367788888888999999999999998751112233444433333344
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 043969 199 GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP--NFLVYNTLVSNLRNAGKLAEAHE 276 (300)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 276 (300)
++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4589999999999886 33466777788888888999999999999998763221 34567777777788899999999
Q ss_pred HHHHHHHcC
Q 043969 277 VIRHMVEKG 285 (300)
Q Consensus 277 ~~~~~~~~~ 285 (300)
+.+++.+.-
T Consensus 563 v~~R~~~~~ 571 (679)
T 4e6h_A 563 LEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998765
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.95 E-value=8.3e-08 Score=67.58 Aligned_cols=128 Identities=11% Similarity=0.032 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (300)
.+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555556666666666666666665542 2245556666666666677777777776666543 225566666667777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 043969 232 MAGKFDEACTMMKEMESRGCNPNFLVYN--TLVSNLRNAGKLAEAHEVIRHMV 282 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~ 282 (300)
..|++++|...+++..+.. +.+...+. .....+...|++++|.+.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766542 12333332 22333556677777777766554
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.95 E-value=5.5e-07 Score=70.84 Aligned_cols=221 Identities=12% Similarity=0.044 Sum_probs=125.9
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcC-C-ChHHHH
Q 043969 59 RQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG-KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKG-D-KPLAAL 135 (300)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 135 (300)
+..++|+++++.++...+. +..+|+.--..+...+ ++++++..++.+.... +-+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3345677777777666433 4555665555555566 4777777777776654 33555566555555444 4 666777
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHH--------HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC-------
Q 043969 136 NLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLD--------ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE------- 200 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------- 200 (300)
++++.+.+.. +-+...|+.-...+.+.+.++ ++++.++.+.+... -|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHH
Confidence 7777766553 334555544333333333333 66667776666532 255666666666666554
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH--------------------HHHHHHHHHHHHCC-----CCCCH
Q 043969 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF--------------------DEACTMMKEMESRG-----CNPNF 255 (300)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~ 255 (300)
++++++.+++....... |...|+-+-..+.+.|+. ........++...+ -.++.
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 56777777777665433 666666555555444432 22333333332221 12466
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 256 LVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 256 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
..+..++..|...|+.++|.++++.+.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 67777778888888888888888887643
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.95 E-value=1.3e-06 Score=68.77 Aligned_cols=235 Identities=9% Similarity=0.018 Sum_probs=170.3
Q ss_pred HHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccC-cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-C-
Q 043969 18 CTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR-QYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRL-G- 94 (300)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~- 94 (300)
....+.+..++|+++++++...+ +-+..+|+.--..+...+ .+++++.+++.+....++ +..+|+.-...+... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 33344556678999999998874 334447887777777778 599999999999998765 788888877777776 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChH--------HHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC-
Q 043969 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPL--------AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN- 165 (300)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 165 (300)
++++++++++.+.+.. +-+..+|+.-...+.+.+.++ ++++.++++.+.. +-+...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 8899999999998775 557778877666665555555 8999999998875 4577788888777777776
Q ss_pred ------HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC----
Q 043969 166 ------LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGEL--------------------EKAQDLFDGMITKG---- 215 (300)
Q Consensus 166 ------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~~---- 215 (300)
++++++.++...... +-|...|+.+-..+.+.|+. ....++..++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 688888888887763 34677787777777666653 33344444443322
Q ss_pred -CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043969 216 -QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVY 258 (300)
Q Consensus 216 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (300)
..++......++..|...|+.++|.++++.+.+. ..|-..-|
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~y 339 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGY 339 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHH
Confidence 1367889999999999999999999999998764 34444333
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=8.6e-08 Score=67.49 Aligned_cols=127 Identities=9% Similarity=-0.092 Sum_probs=70.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.+..+...+...|++++|...|++..+.... +..++..+...+...|++++|...+++..... +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4555556666666666666666666654322 45556666666666666666666666665543 334555556666666
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHhhH--HHHHHHHHhCCCHHHHHHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKEVGFDPSVLHF--TTLMDGLSRAGNLDACKYFFDEM 176 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~ 176 (300)
..|++++|...+++..+.. +.+...+ ......+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666665542 2222233 22222244555555555555443
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.93 E-value=8.3e-09 Score=71.70 Aligned_cols=96 Identities=8% Similarity=-0.046 Sum_probs=71.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.+..+...+.+.|++++|+..|+++.+..+. +...|..+..++...|++++|+..|++..... |.++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 6667777777778888888888877776433 67777777777777888888888887777664 445667777777777
Q ss_pred cCCChHHHHHHHHHHHHc
Q 043969 127 KGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (300)
..|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 788888888888777775
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=3.3e-08 Score=66.48 Aligned_cols=111 Identities=6% Similarity=-0.098 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCA 89 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (300)
...+......+.+.|++++|++.|++....+ +.+...|..+..++.+.|++++|+..|++.++..+. +...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 4567788899999999999999999988775 456779999999999999999999999999987544 78889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
+...|++++|.+.|++..+.. |.+...+..+-.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 999999999999999998874 334555544433
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=2e-08 Score=77.67 Aligned_cols=194 Identities=8% Similarity=-0.101 Sum_probs=113.8
Q ss_pred CchHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043969 8 TTARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVM 87 (300)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (300)
.+...+..+...+.+.|++++|+..+.+..... +.+...|..+..++.+.|++++|...+++..+..+. +...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 355667777778888888888888888877653 235567778888888888888888888888776433 667777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCH
Q 043969 88 CAKYRLGKLDQFHRLLDEMGRSGFSPDF-HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166 (300)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (300)
.++...|++++|...++...+.. |+. ..+...+....+ ...+. .+........+.+......+.. + ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 88888888888888887775542 211 111111111111 11111 1222222323333333333322 2 25777
Q ss_pred HHHHHHHHHHHhCCCCCcc-ccHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 043969 167 DACKYFFDEMANKGCMPDV-VCYTVMITSYIAA-GELEKAQDLFDGMIT 213 (300)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~-~~~~~a~~~~~~~~~ 213 (300)
++|.+.++...+. .|+. .....+-..+.+. +.+++|.++|.+..+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777666654 3332 2233333333343 567778888877654
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=2.2e-08 Score=73.21 Aligned_cols=133 Identities=11% Similarity=-0.036 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-CccccHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--C
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANK----GCM-PDVVCYTVMITSYIAAGELEKAQDLFDGMITK----GQLP--N 219 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p--~ 219 (300)
..+..+...+...|++++|...+++.... +.. .....+..+...+...|++++|...+++..+. +..| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 33444444444444444444444443321 101 11233444444555555555555555544332 1011 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 220 VFTYNSMIRGFCMAGKFDEACTMMKEMESR----GCNP-NFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
...+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 233455555555556666666555555431 1100 012234555556666666666666665554
No 129
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.92 E-value=2.2e-07 Score=80.16 Aligned_cols=234 Identities=7% Similarity=-0.057 Sum_probs=170.3
Q ss_pred HHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHH-HHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 27 RKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIE-WVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDE 105 (300)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (300)
+.+..+|++..... +-....|...+..+...|+.+.|. ++|++..... +.+...|...+...-+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44566777766542 345558888888888889988996 9999998753 34666777788888889999999999999
Q ss_pred HHhCC---------CCCC------------HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC-
Q 043969 106 MGRSG---------FSPD------------FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA- 163 (300)
Q Consensus 106 ~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 163 (300)
+.... -.|+ ..+|...+....+.|..+.|.++|.+..+.........|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 87531 0132 3467888888888899999999999998761112233444333333333
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHH
Q 043969 164 GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP--NVFTYNSMIRGFCMAGKFDEACT 241 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~ 241 (300)
++.+.|..+|+...+. .+.+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5699999999998876 33355667788888888999999999999998764322 34678888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 242 MMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
+.+++.+. .|+......++.-|
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHh--CCCCcHHHHHHHHh
Confidence 99999986 34444444444433
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=2.9e-08 Score=72.51 Aligned_cols=27 Identities=4% Similarity=-0.026 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 80 ILTYNIVMCAKYRLGKLDQFHRLLDEM 106 (300)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (300)
..++..+...+...|++++|...+++.
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 52 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQAL 52 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 334444444444555555555544444
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=2.9e-08 Score=71.00 Aligned_cols=120 Identities=5% Similarity=-0.025 Sum_probs=65.1
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-HhcCCCh--HH
Q 043969 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV-LGKGDKP--LA 133 (300)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 133 (300)
..|++++|...++...+..+ .+...+..+...+...|++++|...+++..... +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34555566666655555432 245555556666666666666666666655443 2344455555555 5555665 66
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 134 ALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
|...+++..+.. +.+...+..+...+...|++++|...|+...+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666665542 233455555566666666666666666666554
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=3.4e-08 Score=76.39 Aligned_cols=193 Identities=9% Similarity=-0.031 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
+...+..+...+...|++++|...|++..+..+. +...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456777888888888999999888888876433 67788888888888889999988888887764 445677888888
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHH
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSV-LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (300)
++...|++++|...|++..+.. |+. ..+...+....+. .++.. +..........+......+ ..+ ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 8888888888888888876642 111 1111111111111 11111 1222222223333333333 222 367788
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 043969 203 KAQDLFDGMITKGQLPNVF-TYNSMIRGFCMA-GKFDEACTMMKEMES 248 (300)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 248 (300)
+|.+.++...+. .|+.. ....+...+.+. +.+++|.++|....+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888887776654 34433 333333333333 567778888876654
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.91 E-value=1.1e-07 Score=63.29 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=49.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.|..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++.... +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 445555555555555555555555554421 234445555555555555555555555554432 234444555555555
Q ss_pred cCCChHHHHHHHHHHHHc
Q 043969 127 KGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (300)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.89 E-value=6.3e-08 Score=65.39 Aligned_cols=116 Identities=8% Similarity=-0.048 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
...|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 335555566666666666666666665554322 45555555566666666666666666655543 3345555566666
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
+...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 666666666666666665542 22333444444444433
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.89 E-value=8.5e-08 Score=63.82 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCA 89 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (300)
...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 5678888899999999999999999988764 34566889999999999999999999999988753 367888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
+...|++++|...++++.... +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 999999999999999998764 345555555555443
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.89 E-value=1e-07 Score=64.37 Aligned_cols=117 Identities=10% Similarity=-0.032 Sum_probs=61.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (300)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555555556666666666666555442 2344555555555666666666666666555542 234455555555
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc
Q 043969 159 GLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA 198 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (300)
++...|++++|...++...+.. +.+...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 5666666666666665555432 11233444444444433
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.89 E-value=4.2e-08 Score=65.98 Aligned_cols=119 Identities=8% Similarity=0.008 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++...... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 33566666677777777777777777766532 256666667777777777777777777766653 3446666777777
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCH
Q 043969 125 LGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (300)
+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777777777776653 33455566666666665543
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=1.2e-07 Score=65.82 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (300)
.+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|+..|++..+.... +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 34444445555555555555555554442 223444555555555555555555555555544221 3444555555555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 043969 232 MAGKFDEACTMMKEMES 248 (300)
Q Consensus 232 ~~~~~~~a~~~~~~~~~ 248 (300)
..|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.88 E-value=8.7e-08 Score=64.35 Aligned_cols=118 Identities=4% Similarity=-0.063 Sum_probs=59.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 043969 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159 (300)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (300)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3344445555555555555555555554432 2344455555555555555555555555555442 2234445555555
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC
Q 043969 160 LSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE 200 (300)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (300)
+...|++++|...++...+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 555555555555555554432 1133344444444444443
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=2.8e-08 Score=71.08 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=100.5
Q ss_pred hhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH-HHhcCCH--
Q 043969 20 CGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCA-KYRLGKL-- 96 (300)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 96 (300)
+...|++++|.+.+.+..... +.+...|..+...+...|++++|...|++..+..+. +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 456788999999998877664 445678999999999999999999999999887533 67788888888 7789998
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVG 145 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (300)
++|...++...... +.+...+..+...+...|++++|...+++..+..
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998875 4567888899999999999999999999998863
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.85 E-value=1.3e-07 Score=75.12 Aligned_cols=131 Identities=7% Similarity=-0.027 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc--------------cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD--------------VVCYTVMITSYIAAGELEKAQDLFDGMITKGQ 216 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 216 (300)
..+..+...+.+.|++++|...|+...+...... ...|..+..++.+.|++++|+..+++..+...
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555555555555555555555544321110 35666666777777777777777777666532
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 043969 217 LPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA-HEVIRHMVE 283 (300)
Q Consensus 217 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 283 (300)
.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.++| ...+++|.+
T Consensus 228 -~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 -NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256667777777777777777777777776642 22455666666666677777666 345555543
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.85 E-value=1.3e-05 Score=62.85 Aligned_cols=232 Identities=11% Similarity=0.009 Sum_probs=156.2
Q ss_pred HccCcHH-HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 56 LGIRQYK-LIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGK----------LDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 56 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
.+.|.++ +|+.+++.++..++. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455554 688888888877543 45556544333333322 577888888887764 4467777777777
Q ss_pred HhcCC--ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC-HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc---
Q 043969 125 LGKGD--KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN-LDACKYFFDEMANKGCMPDVVCYTVMITSYIAA--- 198 (300)
Q Consensus 125 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 198 (300)
+.+.+ .+++++.+++.+.+.. +-+...|+.-...+...|. +++++..+..+.+.. +-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 77766 4788888888888874 4466777766666677777 588888888888764 33666777666665554
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHCCCCCCH-
Q 043969 199 -----------GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA-----------GKFDEACTMMKEMESRGCNPNF- 255 (300)
Q Consensus 199 -----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~- 255 (300)
+.++++++.+.+.....+. |...|+-+-..+.+. +.++++++.++++.+. .|+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENK 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccccc
Confidence 4578899999988876443 777776555444444 4578899999999985 4543
Q ss_pred HHHHHHH---HHHHhcCCHHHHHHHHHHHHHcC-----hHHHHHHHh
Q 043969 256 LVYNTLV---SNLRNAGKLAEAHEVIRHMVEKG-----KYIHLVSKF 294 (300)
Q Consensus 256 ~~~~~li---~~~~~~g~~~~a~~~~~~~~~~~-----~~~~l~~~~ 294 (300)
-.+..++ ......|..+++...+.++++-+ .|.++.+.+
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 2222221 22234678889999999998765 677766554
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=1.9e-07 Score=74.12 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHH
Q 043969 116 HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSY 195 (300)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (300)
..|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 455555556666666666666666655542 3344555555566666666666666666555542 12344555555555
Q ss_pred HhcCCHHHH-HHHHHHH
Q 043969 196 IAAGELEKA-QDLFDGM 211 (300)
Q Consensus 196 ~~~~~~~~a-~~~~~~~ 211 (300)
...|+.++| ...|+.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 566666555 3344444
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.80 E-value=3.3e-07 Score=69.78 Aligned_cols=187 Identities=7% Similarity=-0.050 Sum_probs=120.6
Q ss_pred ccccHHHHHHHHHHhhhcCCCcCHHHHHHH-------HHHHHccCcHHHHHHHHHHhhhCCCCCC---------------
Q 043969 22 EVGLARKVVERFIKSKLFNFRPFKNSYNAI-------LHALLGIRQYKLIEWVYQQMSDEGYAPD--------------- 79 (300)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 79 (300)
..++...|.+.|.+....+ +-....|..+ ...+.+.++..+++..++.-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5788999999999887764 2334477766 4555555555555555555443 2221
Q ss_pred -------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc--H
Q 043969 80 -------ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPS--V 150 (300)
Q Consensus 80 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 150 (300)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122345566778888888888888776543 443355555557778888888888887554431 111 2
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD--VVCYTVMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3566677778888888888888887765432243 234555666777888888888888888775
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=4.9e-08 Score=67.69 Aligned_cols=95 Identities=11% Similarity=-0.064 Sum_probs=48.1
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|+..+++..... +.+...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 4444455555555555555555555544322 44455555555555555555555555554442 223444455555555
Q ss_pred cCCChHHHHHHHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKE 143 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~ 143 (300)
..|++++|...|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.80 E-value=1.6e-07 Score=71.46 Aligned_cols=187 Identities=6% Similarity=-0.159 Sum_probs=94.0
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------
Q 043969 57 GIRQYKLIEWVYQQMSDEGYAPDILTYNIV-------MCAKYRLGKLDQFHRLLDEMGRSGFSPD--------------- 114 (300)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 114 (300)
..++...|.+.|.++.+..+. ....|..+ ...+.+.++..++...+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 467777777777777776433 45566555 2333333333333333333222 1221
Q ss_pred -------HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc--c
Q 043969 115 -------FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD--V 185 (300)
Q Consensus 115 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 185 (300)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122233445555666666666666655432 222233344445566666666666665433321 110 1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN--VFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2445555556666666666666666553322132 234444555556666666666666666654
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=9.1e-08 Score=66.30 Aligned_cols=99 Identities=9% Similarity=-0.046 Sum_probs=73.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (300)
+...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|+..|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 45566666777778888888888888877664 4466777777778888888888888888877763 335566777777
Q ss_pred HHHhCCCHHHHHHHHHHHHhC
Q 043969 159 GLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~ 179 (300)
++...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888777654
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.78 E-value=2.3e-08 Score=72.99 Aligned_cols=145 Identities=4% Similarity=-0.185 Sum_probs=69.9
Q ss_pred HhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC---------------HhhH
Q 043969 19 TCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD---------------ILTY 83 (300)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~ 83 (300)
.....++++++.+.++...... ......+..+...+...|++++|...|++..+...... ...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3334455555555554322210 11233566677777788888888888888776532211 1444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 84 NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
..+..++...|++++|+..++...... +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence 455555555555555555555554442 2344455555555555555555555555554442 22333444444444433
Q ss_pred CCH
Q 043969 164 GNL 166 (300)
Q Consensus 164 ~~~ 166 (300)
++.
T Consensus 170 ~~~ 172 (198)
T 2fbn_A 170 KEA 172 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 149
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.75 E-value=2.4e-06 Score=70.11 Aligned_cols=164 Identities=9% Similarity=-0.079 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----hHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC-cHhh
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGF-SPDF----HTYNILLHVLGKGDKPLAALNLLNHMKEV----GFDP-SVLH 152 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 152 (300)
+..+...|...|++++|.+.+..+...-- .++. .+.+.+-..+...|+++.+..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 34445555555555555555554432100 0111 11222223333445555555555544321 1111 1234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC--CC--CC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HH
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANK--GC--MP-DVVCYTVMITSYIAAGELEKAQDLFDGMITK----GQLPN--VF 221 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~ 221 (300)
+..+...|...|++++|..+++..... +. .+ ....+..++..|...|++++|..++++.... +.+|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 455555555566666666555554321 10 01 1234555555555666666666655554321 11111 13
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEM 246 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (300)
.+..+...+...+++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444445555555655555554444
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.75 E-value=3.5e-08 Score=72.03 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-C--------------ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043969 151 LHFTTLMDGLSRAGNLDACKYFFDEMANKGCM-P--------------DVVCYTVMITSYIAAGELEKAQDLFDGMITKG 215 (300)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~--------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 215 (300)
..+..+...+...|++++|...|+...+.... | ....+..+..++...|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455555666666666666666666553111 1 02567777777888888888888888877763
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcC
Q 043969 216 QLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAH-EVIRHMVEKG 285 (300)
Q Consensus 216 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~ 285 (300)
+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++. ..+..+...+
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2367778888888888888888888888887652 234566666666777777766666 5555555544
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=1.6e-07 Score=64.55 Aligned_cols=96 Identities=7% Similarity=-0.116 Sum_probs=63.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|...++...... +.++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 5555666666777777777777777665432 56666666677777777777777777766654 345556666666777
Q ss_pred cCCChHHHHHHHHHHHHc
Q 043969 127 KGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (300)
..|++++|...|+...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777766654
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=5.2e-07 Score=60.43 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=52.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.|......+.+.|++++|...|++..+..+. +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4445555555556666666666555554322 45555555555556666666666665555543 334445555555555
Q ss_pred cCCChHHHHHHHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKE 143 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~ 143 (300)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 56666666655555544
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.7e-06 Score=70.97 Aligned_cols=167 Identities=8% Similarity=-0.082 Sum_probs=120.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcH----hhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-ccc
Q 043969 117 TYNILLHVLGKGDKPLAALNLLNHMKEVG-FDPSV----LHFTTLMDGLSRAGNLDACKYFFDEMANK----GCMP-DVV 186 (300)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 186 (300)
.+..+...|...|++++|.+.+..+...- ..++. .+.+.+-..+...|+.+.+..++...... +..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 36678889999999999999999876531 11121 22333444455678999999999877532 2222 245
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCC-C-C--H
Q 043969 187 CYTVMITSYIAAGELEKAQDLFDGMITK--GQ--LP-NVFTYNSMIRGFCMAGKFDEACTMMKEMESR--GCN-P-N--F 255 (300)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~ 255 (300)
++..+...+...|++++|..+++++... +. .| ...++..++..|...|++++|..++++.... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6788899999999999999999987653 11 11 2467889999999999999999999887642 122 2 1 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 256 LVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 256 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
..+..+...+...|++++|...|.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666777889999999998888765
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=8.5e-07 Score=58.18 Aligned_cols=96 Identities=8% Similarity=-0.134 Sum_probs=52.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|...+++..... +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 444555555555566666655555555432 144555555555555666666666665555442 234455555555566
Q ss_pred cCCChHHHHHHHHHHHHc
Q 043969 127 KGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (300)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666655544
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.73 E-value=3.2e-07 Score=61.72 Aligned_cols=96 Identities=8% Similarity=0.138 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKG--QLPN----VFTYNS 225 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~----~~~~~~ 225 (300)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44555556666666666666666655542 2234455555666666666666666666554421 1111 124455
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 043969 226 MIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555666666666555554
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=1.2e-06 Score=57.46 Aligned_cols=97 Identities=11% Similarity=-0.055 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043969 11 RTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAK 90 (300)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (300)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344444455555555555555555544432 223334455555555555555555555555544221 344445555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 043969 91 YRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~ 109 (300)
...|++++|...++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555443
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=4.2e-07 Score=59.12 Aligned_cols=96 Identities=9% Similarity=-0.074 Sum_probs=50.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhHHHHHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSP--DFHTYNILLHV 124 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 124 (300)
.+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 4444555555555555555555555544322 44455555555555555555555555555442 22 34455555555
Q ss_pred HhcC-CChHHHHHHHHHHHHc
Q 043969 125 LGKG-DKPLAALNLLNHMKEV 144 (300)
Q Consensus 125 ~~~~-~~~~~a~~~~~~~~~~ 144 (300)
+... |++++|.+.++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555544
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=5.1e-07 Score=60.47 Aligned_cols=99 Identities=9% Similarity=-0.073 Sum_probs=86.9
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
+...|..+...+.+.|++++|++.|.+....+ +.+...|..+..++...|++++|+..+++..+..+. +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 45677888889999999999999999988764 445678999999999999999999999999987543 6788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 043969 89 AKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~ 109 (300)
++...|++++|...+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.70 E-value=4.7e-07 Score=58.89 Aligned_cols=97 Identities=18% Similarity=0.101 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 043969 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP--NFLVYNTLVS 263 (300)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 263 (300)
..+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3444444455555555555555555544321 234445555555555555555555555555431 11 2444555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHHc
Q 043969 264 NLRNA-GKLAEAHEVIRHMVEK 284 (300)
Q Consensus 264 ~~~~~-g~~~~a~~~~~~~~~~ 284 (300)
++... |++++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555443
No 160
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=7.2e-05 Score=62.49 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=36.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043969 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCM-AGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAH 275 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 275 (300)
+.++.+.|..+|.+. .. ...+...|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344566666666666 21 11233333322211111 224666666666665531 112233333444445555555555
Q ss_pred HHHHHH
Q 043969 276 EVIRHM 281 (300)
Q Consensus 276 ~~~~~~ 281 (300)
.+|+++
T Consensus 375 ~l~er~ 380 (493)
T 2uy1_A 375 ALFKRL 380 (493)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 555554
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.5e-06 Score=59.64 Aligned_cols=97 Identities=11% Similarity=-0.020 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD----ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (300)
...+..+...+...|++++|...|++..+.. |+ ...+..+...+...|++++|...++...... +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3455555555556666666666666555542 22 3445555555556666666666665555442 224455555
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555566666666666666655554
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=4.3e-07 Score=62.36 Aligned_cols=99 Identities=12% Similarity=-0.016 Sum_probs=76.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (300)
+...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|+..|++..... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34455666677788888888888888887764 4567777888888888888888888888887764 445566777788
Q ss_pred HHHhCCCHHHHHHHHHHHHhC
Q 043969 159 GLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~ 179 (300)
++...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887664
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=5.7e-07 Score=60.46 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=54.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HhHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSG--FSPD----FHTYNI 120 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 120 (300)
.+..+...+.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4555566666666666666666666655322 45556666666666666666666666554331 0111 124555
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
+..++...|++++|++.|++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556666666666666666666553
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=1.2e-06 Score=59.47 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=70.9
Q ss_pred CcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043969 148 PSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMI 227 (300)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 227 (300)
.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...+++..+... .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 355667777777777788888888777776653 23456677777777777778888777777776532 2566777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHC
Q 043969 228 RGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.++...|++++|...+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777777653
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=1.1e-06 Score=61.83 Aligned_cols=98 Identities=10% Similarity=-0.067 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 45 KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
...|..+...+...|++++|+..|++.++.... +...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 335666666666777777777777776665422 55666666667777777777777777666654 3345666666666
Q ss_pred HhcCCChHHHHHHHHHHHHc
Q 043969 125 LGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (300)
+...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77777777777777766654
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=1.4e-06 Score=59.09 Aligned_cols=94 Identities=10% Similarity=-0.067 Sum_probs=42.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLG 126 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (300)
.|..+...+...|++++|...|++..+..+. +...+..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 4444444444444444444444444443211 33444444444444444444444444444432 223334444444444
Q ss_pred cCCChHHHHHHHHHHH
Q 043969 127 KGDKPLAALNLLNHMK 142 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~ 142 (300)
..|++++|...|++..
T Consensus 89 ~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 89 EMESYDEAIANLQRAY 104 (137)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=8.9e-07 Score=62.35 Aligned_cols=100 Identities=8% Similarity=0.020 Sum_probs=82.2
Q ss_pred CcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043969 148 PSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMI 227 (300)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 227 (300)
.+...+..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+... .+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 345677788888899999999999999888763 33667788888889999999999999999887643 3678888889
Q ss_pred HHHhccCCHHHHHHHHHHHHHC
Q 043969 228 RGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.+|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999988874
No 168
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=0.0001 Score=61.61 Aligned_cols=202 Identities=10% Similarity=0.055 Sum_probs=124.2
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 043969 64 IEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (300)
+..+|++++... +.+...|...+.-+.+.|+.+.|..++++.... |.+...+...... .+.++. ++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~----~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV----MDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH----TTCTHH---HHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh----cchhHH---HHHHHH
Confidence 445666665543 224566666666666777777887777777766 3333333221111 111111 222221
Q ss_pred cC---------C---CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHh-cCCHHHHHHHHHH
Q 043969 144 VG---------F---DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIA-AGELEKAQDLFDG 210 (300)
Q Consensus 144 ~~---------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~ 210 (300)
.- . ......|...+....+.++.+.|..+|+.. ... ..+...|......-.. .++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 10 0 011244566666666778899999999998 321 1233344332222222 3369999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 211 MITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 211 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
..+.. +-+...+...+......|+.+.|..+|+++. .....|...+..=...|+.+.+..++++..+
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88763 2245566777887788999999999999873 2567777777766778999999998888874
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3.7e-06 Score=57.67 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=54.7
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcC----HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPF----KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYN 84 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (300)
+...+..+...+...|++++|++.|++.... .|+ ...|..+...+...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 3444555555556666666666666665543 233 345555555566666666666666665554322 445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 85 IVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
.+..++...|++++|...+++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555666666666666666655544
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.60 E-value=7.4e-07 Score=59.71 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=49.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF--SPD----FHTYNI 120 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 120 (300)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++....... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44445555555555555555555555443 12444555555555555555555555555543320 011 344445
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
+..++...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555543
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.60 E-value=1.1e-06 Score=58.49 Aligned_cols=96 Identities=14% Similarity=0.008 Sum_probs=59.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043969 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLR 266 (300)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (300)
.+..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|+..+++..+.. +-+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344455566666777777777766666432 256666666666677777777777776666642 224455666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 043969 267 NAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 267 ~~g~~~~a~~~~~~~~~~ 284 (300)
..|++++|...+++.++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777666654
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.60 E-value=3.4e-07 Score=61.43 Aligned_cols=113 Identities=8% Similarity=-0.025 Sum_probs=91.7
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCC--CC----Hhh
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYA--PD----ILT 82 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 82 (300)
....+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|...+++..+.... ++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 35677888899999999999999999988764 445668889999999999999999999999876421 12 677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
+..+..++...|++++|.+.++...+.. |+......+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 8888899999999999999999998863 566655555443
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.59 E-value=6.2e-07 Score=62.54 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-Cc----cccHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCM-PD----VVCYTVMITSYIAAGELEKAQDLFDGMITK----GQLP-NVF 221 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~ 221 (300)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555555555555554332100 00 124555566666666666666666665432 1000 134
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMESR----GCNP-NFLVYNTLVSNLRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 283 (300)
.+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666677777777777777777766542 1111 134566667777788888888888877664
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.53 E-value=0.00017 Score=56.53 Aligned_cols=219 Identities=11% Similarity=-0.003 Sum_probs=155.2
Q ss_pred ccccH-HHHHHHHHHhhhcCCCcC-HHHHHHHHHHHHccCc----------HHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043969 22 EVGLA-RKVVERFIKSKLFNFRPF-KNSYNAILHALLGIRQ----------YKLIEWVYQQMSDEGYAPDILTYNIVMCA 89 (300)
Q Consensus 22 ~~~~~-~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (300)
+.|.+ ++|++.++.+...+ |+ ..+|+.--..+...+. +++++.+++.+....++ +..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34544 58999999988764 44 3356554444433333 67899999999987655 78888887777
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC---
Q 043969 90 KYRLG--KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDK-PLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA--- 163 (300)
Q Consensus 90 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 163 (300)
+...+ ++++++.+++.+.+.. +-+..+|+.-...+...|. ++++++.++.+.+.. +-+...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 77777 4899999999998876 5678888888777778888 589999999999875 44677777665555444
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHH
Q 043969 164 -----------GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA-----------GELEKAQDLFDGMITKGQLPNVF 221 (300)
Q Consensus 164 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~ 221 (300)
+.++++.+.+....... +-|...|+-+-..+.+. +.++++++.++++.+.. |+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc-
Confidence 44778888888887663 33666776555555544 45789999999998863 443
Q ss_pred HHHHH-----HHHHhccCCHHHHHHHHHHHHHC
Q 043969 222 TYNSM-----IRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 222 ~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.|..+ .......+..+++...+.++++.
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 33322 22223467788888899888874
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.50 E-value=1.8e-07 Score=77.85 Aligned_cols=125 Identities=11% Similarity=-0.046 Sum_probs=98.1
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 043969 12 TFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKY 91 (300)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (300)
.+..+...+.+.|++++|++.+++..... +.+...|..+..++.+.|++++|++.+++..+.... +...+..+..++.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34445566778899999999999988764 344668999999999999999999999999988543 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH--HhcCCChHHHHHHHH
Q 043969 92 RLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV--LGKGDKPLAALNLLN 139 (300)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 139 (300)
..|++++|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988764 3345556666555 778899999999988
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.49 E-value=1.4e-06 Score=57.94 Aligned_cols=90 Identities=10% Similarity=-0.043 Sum_probs=41.4
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCC
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDK 130 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (300)
+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334444445555555555544443221 34444444444445555555555554444432 2233444444444444445
Q ss_pred hHHHHHHHHHHH
Q 043969 131 PLAALNLLNHMK 142 (300)
Q Consensus 131 ~~~a~~~~~~~~ 142 (300)
+++|...+++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555554444444
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=2.9e-06 Score=70.35 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc--------------cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD--------------VVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (300)
.+..+...+.+.|++++|...|+...+...... ...|..+..++.+.|++++|+..+++..+...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS- 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 444455555555555555555555544311100 34566666666666666666666666666532
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043969 218 PNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAH 275 (300)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 275 (300)
.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 255666666666666667777766666666541 123345555555666666655544
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=1.3e-06 Score=60.77 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCC---CC--cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-cccc
Q 043969 118 YNILLHVLGKGDKPLAALNLLNHMKEVGF---DP--SVLHFTTLMDGLSRAGNLDACKYFFDEMANK----GCMP-DVVC 187 (300)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 187 (300)
+..+...+...|++++|...+++..+... .+ ....+..+...+...|++++|...++...+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444445555555555544433200 00 0124445555556666666666666554332 1000 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITK----GQL-PNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666666677777777776665432 111 1134566677777777888888777776654
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=1.4e-05 Score=53.35 Aligned_cols=92 Identities=8% Similarity=-0.067 Sum_probs=45.9
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHH
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDI---LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD---FHTYNILLHV 124 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 124 (300)
+...+...|++++|...|+.+.+..+. +. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344445555555555555555544221 12 344444555555555555555555554432 112 3344455555
Q ss_pred HhcCCChHHHHHHHHHHHHc
Q 043969 125 LGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (300)
+...|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555544
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=1.1e-05 Score=53.98 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=50.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCcc----ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 043969 156 LMDGLSRAGNLDACKYFFDEMANKGCMPDV----VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN---VFTYNSMIR 228 (300)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 228 (300)
+...+...|++++|...|+...+.. |+. ..+..+..++...|++++|...|++..+.... + ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 3445555666666666666655532 222 24555555666666666666666666554221 2 445555666
Q ss_pred HHhccCCHHHHHHHHHHHHHC
Q 043969 229 GFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~ 249 (300)
++...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666654
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.41 E-value=4.2e-06 Score=69.33 Aligned_cols=152 Identities=8% Similarity=-0.096 Sum_probs=114.6
Q ss_pred ccccHHHHHHHHHHhhhcCCCc-CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC--------------HhhHHHH
Q 043969 22 EVGLARKVVERFIKSKLFNFRP-FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPD--------------ILTYNIV 86 (300)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l 86 (300)
..+++++|++.+...... .| ....|..+...+.+.|++++|...|++.++...... ...|..+
T Consensus 246 ~l~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence 445566666666544333 23 344788889999999999999999999887533311 5788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCH
Q 043969 87 MCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNL 166 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (300)
..++.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875 4567888999999999999999999999998863 34557788888888888888
Q ss_pred HHHHH-HHHHHH
Q 043969 167 DACKY-FFDEMA 177 (300)
Q Consensus 167 ~~a~~-~~~~~~ 177 (300)
+++.+ .+..|.
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 87764 445554
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.40 E-value=8.7e-07 Score=58.52 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=49.9
Q ss_pred cccHHHHHHHHHHhhhcC--CCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043969 23 VGLARKVVERFIKSKLFN--FRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (300)
.|++++|+..|++....+ -+.+...+..+..++...|++++|+..|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666665542 1222335666666666667777777777666665433 4556666666666667777776
Q ss_pred HHHHHHHhC
Q 043969 101 RLLDEMGRS 109 (300)
Q Consensus 101 ~~~~~~~~~ 109 (300)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666544
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.39 E-value=1.4e-06 Score=72.64 Aligned_cols=124 Identities=10% Similarity=-0.082 Sum_probs=98.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK 127 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (300)
+..+...+.+.|++++|.+.|++..+.... +..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344455667889999999999999987533 68899999999999999999999999998875 4567889999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH--HHhCCCHHHHHHHHH
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG--LSRAGNLDACKYFFD 174 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 174 (300)
.|++++|.+.+++..+.. +.+...+..+..+ +.+.|++++|...++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998863 2344455555555 788899999999988
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=1.3e-06 Score=57.70 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=27.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
.+..+..++...|++++|+..|++..+.... +...+..+..++...|++++|...+++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444443221 344444444444444555555444444443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.36 E-value=5.8e-06 Score=66.44 Aligned_cols=121 Identities=7% Similarity=-0.052 Sum_probs=78.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhh----------------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043969 48 YNAILHALLGIRQYKLIEWVYQQMSD----------------EGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGF 111 (300)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 111 (300)
+..+...+.+.|++++|+..|++.++ .. +.+..+|..+..++.+.|++++|+..+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 34455555666666666666665554 21 1245667777777777788888888877777654
Q ss_pred CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHH
Q 043969 112 SPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKY 171 (300)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (300)
+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+...+...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777888888888887777653 3355566666666666666665543
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=7.5e-06 Score=65.78 Aligned_cols=121 Identities=6% Similarity=-0.074 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----------------CCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGR----------------SGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGF 146 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (300)
+..+...+.+.|++++|+..+++..+ .. +.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 45566778888888888888888765 21 2345678888888888999999999998888763
Q ss_pred CCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHH
Q 043969 147 DPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQD 206 (300)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 206 (300)
+.+...+..+..+|...|++++|...|+...+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888889999999999998887763 2245566677777777777777654
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.33 E-value=1.5e-05 Score=55.85 Aligned_cols=97 Identities=12% Similarity=-0.014 Sum_probs=62.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhC--------CC---------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDE--------GY---------APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
.+......+.+.|++++|+..|++.++. .. +.+...|..+..++.+.|++++|+..++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555666666667777777666666553 00 112345666666777777777777777777665
Q ss_pred CCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 043969 110 GFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
. +.+...|..+..++...|++++|...|++..+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4 445666677777777777777777777777665
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.31 E-value=2.8e-05 Score=52.91 Aligned_cols=112 Identities=9% Similarity=-0.064 Sum_probs=65.9
Q ss_pred cccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----cCCHHH
Q 043969 23 VGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR----LGKLDQ 98 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 98 (300)
.+++++|+++|++..+.+ .|+.. +...+...+..++|.+.|++..+.| +...+..+...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 345666777776666554 33322 5555555556666666666666654 45555556666655 566666
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHhc----CCChHHHHHHHHHHHHcC
Q 043969 99 FHRLLDEMGRSGFSPDFHTYNILLHVLGK----GDKPLAALNLLNHMKEVG 145 (300)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 145 (300)
|.+.|++..+.| ++..+..|...|.. .+++++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666666554 44555555555555 566666666666666554
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=1.3e-05 Score=56.13 Aligned_cols=103 Identities=12% Similarity=-0.033 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhc--------C---------CCcCHHHHHHHHHHHHccCcHHHHHHHHHHhh
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLF--------N---------FRPFKNSYNAILHALLGIRQYKLIEWVYQQMS 72 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (300)
...+......+.+.|++++|+..|.+.... . .+.+...|..+..++.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 455677788889999999999999987664 0 01223478889999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 043969 73 DEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF 115 (300)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (300)
+..+. +...|..+..++...|++++|...|+...... |+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~ 130 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAA 130 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGG
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCC
Confidence 87533 78889999999999999999999999998773 543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=4.1e-06 Score=66.51 Aligned_cols=129 Identities=6% Similarity=-0.132 Sum_probs=69.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH------------------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI------------------LTYNIVMCAKYRLGKLDQFHRLLDEMGR 108 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (300)
.+..+...+.+.|++++|...|++..+.. |+. ..|..+..++.+.|++++|+..+++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555556666666666666666655442 221 2677788888889999999999988877
Q ss_pred CCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHH-HHhCCCHHHHHHHHHHHHhC
Q 043969 109 SGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDG-LSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~ 179 (300)
.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+.+...|..+...
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 64 4467788888889999999999999998887652 2234445545444 33456677788888877654
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.29 E-value=5.1e-05 Score=51.59 Aligned_cols=110 Identities=5% Similarity=-0.112 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHH
Q 043969 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCM----AGKFDEAC 240 (300)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 240 (300)
++++|...|+...+.| .|+ .. +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444555554444443 111 11 3333334444455555555555443 34444455555544 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 043969 241 TMMKEMESRGCNPNFLVYNTLVSNLRN----AGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 285 (300)
+.|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 33444445555554 555556666665555555
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=5.8e-06 Score=68.68 Aligned_cols=126 Identities=10% Similarity=-0.037 Sum_probs=96.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhC---CC---CC-ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C-CHHHHH
Q 043969 159 GLSRAGNLDACKYFFDEMANK---GC---MP-DVVCYTVMITSYIAAGELEKAQDLFDGMITK-----GQL-P-NVFTYN 224 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~---~~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-p-~~~~~~ 224 (300)
.+...|++++|+.++++..+. -+ .| ...+++.|..+|...|++++|..++++..+. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887543 11 12 2457899999999999999999999987642 221 2 246789
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 225 SMIRGFCMAGKFDEACTMMKEMES-----RGC-NPN-FLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
.|...|...|++++|..++++..+ .|- .|+ ..+...+-.++...+.+++|+.++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 232 233 344566667788899999999999999873
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=5.9e-06 Score=68.65 Aligned_cols=125 Identities=10% Similarity=-0.031 Sum_probs=96.2
Q ss_pred HHhcCCChHHHHHHHHHHHHc-----C--CCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-----C-CCCc-cccHH
Q 043969 124 VLGKGDKPLAALNLLNHMKEV-----G--FDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK-----G-CMPD-VVCYT 189 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 189 (300)
.+...|++++|+.++++..+. | .+....+++.|..+|...|++++|..++++..+. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887653 1 1123467899999999999999999999887542 2 1222 45789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 190 VMITSYIAAGELEKAQDLFDGMITK-----GQL-PN-VFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
.|...|...|++++|..++++..+. |.. |+ ..+.+.+-.++...+.+++|..++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642 332 22 34556777888889999999999999876
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.25 E-value=4.4e-06 Score=66.34 Aligned_cols=149 Identities=11% Similarity=0.047 Sum_probs=76.1
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHH
Q 043969 115 FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITS 194 (300)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (300)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 345566666777778888888877777664 233221 12222233322211 11367778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHH
Q 043969 195 YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN-FLVYNTLVSN-LRNAGKLA 272 (300)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~-~~~~g~~~ 272 (300)
+.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877632 36778888888888888888888888887764 333 3344444433 23456677
Q ss_pred HHHHHHHHHHHcC
Q 043969 273 EAHEVIRHMVEKG 285 (300)
Q Consensus 273 ~a~~~~~~~~~~~ 285 (300)
.+.+.|+++.+..
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 7777887776554
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.23 E-value=3.7e-05 Score=53.06 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 222 TYNSMIRGFCMAGKFDEACTMMKEMESR-----GCNPN-FLVY----NTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666666666667777666666666653 11343 3455 66666777777777777777777654
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=0.00041 Score=58.99 Aligned_cols=171 Identities=10% Similarity=-0.027 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCC-
Q 043969 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGK----------LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGD- 129 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 129 (300)
.++|++.++++....+. +..+|+.--.++...++ ++++++.++.+.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 46778888888887544 56677766666666666 888999998888775 456778888888888888
Q ss_pred -ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc---------
Q 043969 130 -KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG-NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA--------- 198 (300)
Q Consensus 130 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------- 198 (300)
+++++++.++++.+.. +-+...|+.-..++.+.| .++++.+.++.+.+... -+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 6699999999998874 446777777777777778 78888888888877643 3667777777666653
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 043969 199 -----GELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKF 236 (300)
Q Consensus 199 -----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (300)
+.++++++.+.+....... |...|.-+-..+.+.++.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 5578999999888876433 677888777777776663
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.18 E-value=4.1e-05 Score=52.83 Aligned_cols=96 Identities=10% Similarity=-0.063 Sum_probs=50.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC------C-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAP------D-----ILTYNIVMCAKYRLGKLDQFHRLLDEMGRS------ 109 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 109 (300)
.+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++....
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455555666677777777776666543220 1 125555555666666666666666555443
Q ss_pred -CCCCCHhHH----HHHHHHHhcCCChHHHHHHHHHHHH
Q 043969 110 -GFSPDFHTY----NILLHVLGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 110 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (300)
. +-+...| .....++...|++++|+..|++..+
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 1123344 4445555555555555555555443
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=0.0005 Score=58.49 Aligned_cols=172 Identities=12% Similarity=-0.020 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCC----------hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 94 GKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDK----------PLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
...++|++.++.+.... +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34567899999988775 3455667766666666666 889999999998874 45777888777778888
Q ss_pred C--CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------
Q 043969 164 G--NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAG-ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA------- 233 (300)
Q Consensus 164 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 233 (300)
+ +++++...++.+.+.. +-+...|+.-..++.+.| .++++++.+.++.+..+. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 7799999999998874 336778888888888888 899999999999887554 788888777776553
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043969 234 -------GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK 270 (300)
Q Consensus 234 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 270 (300)
+.++++.+.+++..... +-+...|..+-..+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 56788999998888752 3355667766666666555
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=4.5e-06 Score=54.14 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 46 NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
..+..+...+...|++++|...|++..+..+. +...+..+..++...|++++|+..+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455555555556666666665555554322 4455555555555566666666665555544
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=3e-06 Score=55.05 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=37.9
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455555566666666666666666655422 24555666666666666666666666666653
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.02 E-value=3.1e-05 Score=53.30 Aligned_cols=99 Identities=11% Similarity=-0.003 Sum_probs=69.5
Q ss_pred hccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcH----------HHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043969 21 GEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQY----------KLIEWVYQQMSDEGYAPDILTYNIVMCAK 90 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (300)
.+.+.+++|++.++.....+ +.+...|..+..++...+++ ++|+..|++.++..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34567888888888877764 44566788788888877765 4888888888877544 667777788888
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 043969 91 YRLG-----------KLDQFHRLLDEMGRSGFSPDFHTYNILLH 123 (300)
Q Consensus 91 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (300)
...| ++++|++.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 7664 677777777777765 466555544444
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.00 E-value=0.00019 Score=46.79 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043969 168 ACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEME 247 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (300)
.+...|+...+.. +.+...+..+...+...|++++|...|++..+... .+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666665542 23455666777777777777777777777776532 256667777777777777777777777766
Q ss_pred H
Q 043969 248 S 248 (300)
Q Consensus 248 ~ 248 (300)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.97 E-value=0.0001 Score=45.53 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=29.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
.+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++....
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4444444455555555555555555443211 3444444444555555555555555554443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.93 E-value=8.7e-05 Score=48.44 Aligned_cols=62 Identities=10% Similarity=-0.123 Sum_probs=26.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 043969 80 ILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMK 142 (300)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (300)
...+..+...+...|++++|...+++..... +.+...|..+..++...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444443332 2223334444444444444444444444433
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=0.00013 Score=45.10 Aligned_cols=83 Identities=13% Similarity=0.034 Sum_probs=66.6
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45678888889999999999999999988764 345668889999999999999999999999887533 5666666666
Q ss_pred HHHhc
Q 043969 89 AKYRL 93 (300)
Q Consensus 89 ~~~~~ 93 (300)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=6.5e-05 Score=51.72 Aligned_cols=100 Identities=8% Similarity=-0.056 Sum_probs=71.7
Q ss_pred HccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 043969 56 LGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKL----------DQFHRLLDEMGRSGFSPDFHTYNILLHVL 125 (300)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (300)
.+.+++++|.+.++...+..+. +...|..+..++...+++ ++|+..|++..+.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3456788899999988887644 788888888888777654 58888888887764 44567788888888
Q ss_pred hcCC-----------ChHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 043969 126 GKGD-----------KPLAALNLLNHMKEVGFDPSVLHFTTLMDG 159 (300)
Q Consensus 126 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (300)
...| ++++|++.|++..+. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 7654 778888888887775 4555555444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.81 E-value=0.00031 Score=44.53 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=43.5
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 184 DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+...+..+..++...|++++|+..|++..+.... +...|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666777777777777777777777665332 455677777777777777777777776654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.66 E-value=0.0004 Score=44.01 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEM 106 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (300)
.+..+...+...|++++|+..|++..+..+. +...|..+..++...|++++|.+.+++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444555555555555544444322 3334444444445555555555444444
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.00037 Score=57.05 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=73.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C-CCCC-HH
Q 043969 191 MITSYIAAGELEKAQDLFDGMITKG---QLP----NVFTYNSMIRGFCMAGKFDEACTMMKEMESR-----G-CNPN-FL 256 (300)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~---~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~ 256 (300)
.+..+.+.|++++|+.++++..+.. ..| ...+++.+..+|...|++++|+.++++..+. | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999887641 112 2467899999999999999999999988742 2 2233 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 257 VYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 257 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
+++.|...|...|++++|+.++++..+-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6888899999999999999999988763
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.56 E-value=0.00025 Score=58.02 Aligned_cols=88 Identities=6% Similarity=-0.045 Sum_probs=69.2
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 043969 197 AAGELEKAQDLFDGMITK---GQLPN----VFTYNSMIRGFCMAGKFDEACTMMKEMESR-----G-CNPN-FLVYNTLV 262 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li 262 (300)
..|++++|+.++++..+. -.-|+ ..+++.+..+|...|++++|..++++..+. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999987653 11122 467899999999999999999999988742 3 2333 35688999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043969 263 SNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
..|...|++++|+.++++..+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999998763
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.50 E-value=0.0073 Score=47.76 Aligned_cols=143 Identities=9% Similarity=-0.075 Sum_probs=84.6
Q ss_pred CcCHHHHHHHHHHHHc--c---CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh---cC--CHHHH---HHHHHHHHh
Q 043969 42 RPFKNSYNAILHALLG--I---RQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYR---LG--KLDQF---HRLLDEMGR 108 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~a---~~~~~~~~~ 108 (300)
+.+...|...+++... . ....+|..+|++.++..+. ....|..+..++.. .+ ..... ...++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4445566666655432 2 3357788888888876322 33444433333321 11 11111 111221111
Q ss_pred -CCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcccc
Q 043969 109 -SGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC 187 (300)
Q Consensus 109 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (300)
...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1125567777777666666788888888888888874 67767777777888888888888888887775 455555
Q ss_pred HH
Q 043969 188 YT 189 (300)
Q Consensus 188 ~~ 189 (300)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.00057 Score=55.88 Aligned_cols=85 Identities=8% Similarity=-0.096 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhC---CCCC----ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHH
Q 043969 164 GNLDACKYFFDEMANK---GCMP----DVVCYTVMITSYIAAGELEKAQDLFDGMITK-----GQ-LPN-VFTYNSMIRG 229 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~~~ 229 (300)
|++++|..++++..+. -+.| ...+++.+..+|...|++++|+.++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554331 1111 1345666677777777777777776665432 21 122 3456777777
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 043969 230 FCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~ 248 (300)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777766654
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.40 E-value=0.026 Score=44.71 Aligned_cols=144 Identities=13% Similarity=0.018 Sum_probs=97.3
Q ss_pred CCCCHhhHHHHHHHHH--hcC---CHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHh----cCCCh-HHHHH---HHHHH
Q 043969 76 YAPDILTYNIVMCAKY--RLG---KLDQFHRLLDEMGRSGFSPD-FHTYNILLHVLG----KGDKP-LAALN---LLNHM 141 (300)
Q Consensus 76 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~-~~a~~---~~~~~ 141 (300)
.+.+...|...+.+.. ..+ +..+|..+|++..+.. |+ ...+..+..+|. ..+.. ..... .+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3557888888886643 333 3578999999998873 54 344554443332 11111 11111 12211
Q ss_pred HH-cCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043969 142 KE-VGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNV 220 (300)
Q Consensus 142 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 220 (300)
.. ...+.+...+..+.-.+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.+.... .|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 11 1225677788888777777899999999999999885 67777777888889999999999999998885 5677
Q ss_pred HHHHH
Q 043969 221 FTYNS 225 (300)
Q Consensus 221 ~~~~~ 225 (300)
.+|..
T Consensus 344 ~t~~~ 348 (372)
T 3ly7_A 344 NTLYW 348 (372)
T ss_dssp HHHHH
T ss_pred ChHHH
Confidence 77653
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.35 E-value=0.0011 Score=41.61 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 192 ITSYIAAGELEKAQDLFDGMITKGQLPNVF-TYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
...+...|++++|...+++..+... .+.. .+..+..++...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666666655422 1344 5566666666666666666666666654
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.35 E-value=0.014 Score=51.94 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=80.6
Q ss_pred ccccHHHHHH-HHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043969 22 EVGLARKVVE-RFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFH 100 (300)
Q Consensus 22 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (300)
..+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+. .. .-.......|++++|.
T Consensus 611 ~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLAR 672 (814)
T ss_dssp HTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHH
Confidence 4566666655 33221 1011335666667777777777655421 11 1123345677777777
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043969 101 RLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKG 180 (300)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (300)
++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+.....|
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 765432 3567777888888888888888777776643 2344444555666665555444444332
Q ss_pred CCCccccHHHHHHHHHhcCCHHHHHHHHH
Q 043969 181 CMPDVVCYTVMITSYIAAGELEKAQDLFD 209 (300)
Q Consensus 181 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (300)
-++....+|.+.|++++|.+++.
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHH
Confidence 12333334444555555554444
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.31 E-value=0.0068 Score=53.91 Aligned_cols=131 Identities=12% Similarity=0.082 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC
Q 043969 84 NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA 163 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (300)
..++..+.+.|..+.|.++.+. .. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555666666666666654421 10 1122334456777776664332 2456677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 043969 164 GNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMM 243 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (300)
++++.|++.|..+.. |..+...+...|+.+...++-+.....|. ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776542 34455555556666665555555444431 233444555566777776666
Q ss_pred HHHH
Q 043969 244 KEME 247 (300)
Q Consensus 244 ~~~~ 247 (300)
.++.
T Consensus 760 ~~~~ 763 (814)
T 3mkq_A 760 IKSQ 763 (814)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 5443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.30 E-value=0.00099 Score=54.51 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=59.6
Q ss_pred hCCCHHHHHHHHHHHHhCC---CCC----ccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHH
Q 043969 162 RAGNLDACKYFFDEMANKG---CMP----DVVCYTVMITSYIAAGELEKAQDLFDGMITK-----GQ-LPN-VFTYNSMI 227 (300)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~ 227 (300)
+.|++++|+..++...+.. +.| ...+++.+..+|...|++++|+.++++..+. |. .|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 5677788888887775431 112 2456777888888888888888888876542 21 122 35677888
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 043969 228 RGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~ 248 (300)
..|...|++++|..++++..+
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 888888888888888877664
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.17 E-value=0.0049 Score=38.51 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 226 MIRGFCMAGKFDEACTMMKEMESRGCNPNFL-VYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
....+...|++++|...+++..+.. +.+.. .+..+..++...|++++|.+.|++.++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567788999999999999999863 33556 88888899999999999999999999876
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.13 E-value=0.0098 Score=40.50 Aligned_cols=82 Identities=11% Similarity=0.081 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHH
Q 043969 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAG---ELEKAQDLFDGMITKGQLP--NVFTYNSMIRGFCMAGKFDEAC 240 (300)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~ 240 (300)
...+++.|.+....+. ++..+...+..++++.+ +.++++.++++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444555554444332 45555555555555555 4446666666665543 12 2334444555556666666666
Q ss_pred HHHHHHHHC
Q 043969 241 TMMKEMESR 249 (300)
Q Consensus 241 ~~~~~~~~~ 249 (300)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666653
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.11 E-value=0.055 Score=41.19 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCCCC---HhHHHHHHHHHhc-----CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhC-CCHH
Q 043969 97 DQFHRLLDEMGRSGFSPD---FHTYNILLHVLGK-----GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRA-GNLD 167 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 167 (300)
..|...+++..+. .|+ ...|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555555555554 243 4456666666666 366666666666666653222245555555666553 6666
Q ss_pred HHHHHHHHHHhCCCC
Q 043969 168 ACKYFFDEMANKGCM 182 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~ 182 (300)
.+.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666665333
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0052 Score=41.83 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccC---cHHHHHHHHHHhhhCCCCC--CHhhHHHHHHHHHhcCCHHH
Q 043969 24 GLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR---QYKLIEWVYQQMSDEGYAP--DILTYNIVMCAKYRLGKLDQ 98 (300)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 98 (300)
+....+.+.+.+....+ .++..+.-.+..++++.+ +.++++.+++...+.. .| +...+-.+.-++.+.+++++
T Consensus 12 ~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 34455555565554444 355555555666677766 5567777777777654 23 34455555666777777777
Q ss_pred HHHHHHHHHhC
Q 043969 99 FHRLLDEMGRS 109 (300)
Q Consensus 99 a~~~~~~~~~~ 109 (300)
|.+.++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777777765
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.91 E-value=0.011 Score=36.75 Aligned_cols=48 Identities=4% Similarity=-0.082 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
.++|..++++.++..+. +......+...+.+.|++++|+..|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444444322 3444444444444445555555555444443
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.84 E-value=0.018 Score=36.52 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=31.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCC------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEG------YAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRS 109 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (300)
.+..+...+...++++.|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445555555555555555555544321 0123344555555555555555555555555443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.76 E-value=0.032 Score=37.68 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=53.5
Q ss_pred CHhHHHHHHHHHhcCCCh------HHHHHHHHHHHHcCCCCcHh-hHHHHHHH------HHhCCCHHHHHHHHHHHHhCC
Q 043969 114 DFHTYNILLHVLGKGDKP------LAALNLLNHMKEVGFDPSVL-HFTTLMDG------LSRAGNLDACKYFFDEMANKG 180 (300)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 180 (300)
|..+|-..+....+.|++ +...++|++.... ++|+.. .+...+.. +...+++++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555545555 5555666666554 444421 11111111 122367777777777765542
Q ss_pred CCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043969 181 CMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 181 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 218 (300)
-.. ...|....+--.+.|+.+.|.+++......+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 3444444444456777777777777776665553
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.71 E-value=0.018 Score=36.50 Aligned_cols=69 Identities=6% Similarity=-0.237 Sum_probs=56.6
Q ss_pred CCchHHHHHHHHHhhccccHHHHHHHHHHhhhcC------CCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCC
Q 043969 7 PTTARTFNILICTCGEVGLARKVVERFIKSKLFN------FRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEG 75 (300)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (300)
+.+..-+-.|...+.+.+++..|..+|+...... ..+...++..+..++.+.|+++.|...++++.+..
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3456667788899999999999999999876531 12345589999999999999999999999998864
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.69 E-value=0.046 Score=33.84 Aligned_cols=48 Identities=4% Similarity=-0.080 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043969 131 PLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK 179 (300)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (300)
.++|..++++..+.. +-+......+...+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555444432 223334444444445555555555555554443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.11 Score=36.39 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=51.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHH
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDAC 169 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (300)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.++.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34456666665555443 2445566666666666666666666555432 22333344445555554
Q ss_pred HHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 170 KYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDG 210 (300)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 210 (300)
.++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433332 244444455556666666666543
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.50 E-value=0.089 Score=34.84 Aligned_cols=137 Identities=11% Similarity=0.063 Sum_probs=70.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHH
Q 043969 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQD 206 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 206 (300)
-.|..++..++..+..... +..-+|.+|--....-+-+-..++++.+-+. .|. ..+|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3566666666666665532 3344444444444444444444444444322 121 12333333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 207 LFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+-.+- .+...++..+..+...|+-++..++..++.. +.+|++...-.+..+|.+.|+..+|.+++.++.++|
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333221 1334455556666666666666666666433 235566666666666666666666666666666666
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.45 E-value=0.098 Score=34.65 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043969 186 VCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC 251 (300)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (300)
..++..+..+...|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444455555555555555555554322 344555555555555555555555555555555554
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.26 E-value=0.1 Score=35.30 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=75.7
Q ss_pred CcHhhHHHHHHHHHhCCCH------HHHHHHHHHHHhCCCCCccc-cHHHHHH------HHHhcCCHHHHHHHHHHHHHC
Q 043969 148 PSVLHFTTLMDGLSRAGNL------DACKYFFDEMANKGCMPDVV-CYTVMIT------SYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~~~ 214 (300)
.|..+|-..+...-+.|++ ++.+++|+..... ++|+.. .|..-|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3556666666666666777 7788888887765 455431 1211111 123357888999999988765
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 215 GQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 215 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
+-.- ...|....+--.+.|+...|.+++...+..+..| ...+.+.++-+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 3333 7777777777788999999999999988876543 34555555443
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.23 E-value=0.056 Score=41.15 Aligned_cols=82 Identities=11% Similarity=-0.024 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhcCCCcC---HHHHHHHHHHHHcc-----CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-CCH
Q 043969 26 ARKVVERFIKSKLFNFRPF---KNSYNAILHALLGI-----RQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRL-GKL 96 (300)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 96 (300)
..+|...+++..+. .|+ ...|..+...|... |+.++|.+.|++.++.++.-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34455555555444 233 23555555555552 55555555555555543322244444455555442 555
Q ss_pred HHHHHHHHHHHhC
Q 043969 97 DQFHRLLDEMGRS 109 (300)
Q Consensus 97 ~~a~~~~~~~~~~ 109 (300)
+++.+.+++....
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 5555555555554
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.16 E-value=0.1 Score=34.15 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhccCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 218 PNVFTYNSMIRGFCMAGKFDE---ACTMMKEMESRGCNP--NFLVYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
|+..+--.+..+++++.+... ++.+++++...+ .| .....-.+.-++.+.|++++|+++++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444445555555544433 444555444432 12 1122223333455555555555555555544
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.2 Score=35.01 Aligned_cols=129 Identities=15% Similarity=0.211 Sum_probs=90.5
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHH
Q 043969 123 HVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202 (300)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (300)
......|+++.|.++.+.+ .+...|..|.......|+++-|++.|....+ +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445679999999887766 2677899999999999999999999987653 566666777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043969 203 KAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 281 (300)
...++-+.....|- ++.....+...|+++++.+++.+.-. .| .........|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 87777666655542 45556667778999999988854322 11 1111223456677777776654
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.46 E-value=0.3 Score=32.00 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHH---HHHHHHHhhhCCCC-CCHhhHHHHHHHHHhcCCHHHH
Q 043969 24 GLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKL---IEWVYQQMSDEGYA-PDILTYNIVMCAKYRLGKLDQF 99 (300)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 99 (300)
.....+.+.+.+....+ .|+..+--.+..++.+.++... ++.+++.+.+.+.+ -.....-.+.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444455555444433 2555544455556666665544 66777776665311 1333444455667777777777
Q ss_pred HHHHHHHHhC
Q 043969 100 HRLLDEMGRS 109 (300)
Q Consensus 100 ~~~~~~~~~~ 109 (300)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.52 Score=41.33 Aligned_cols=51 Identities=14% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043969 195 YIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEM 246 (300)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (300)
+...|+++-|+.+-++.... .+-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44567777777777776664 2224667777777777777777777766655
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.06 E-value=0.32 Score=30.24 Aligned_cols=63 Identities=10% Similarity=0.238 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043969 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVS 263 (300)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (300)
+.-+..+-++.+......|++......+++|.+.+++..|.++++-.+.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44566666666666677777777777777777777777777777776654 2223345655554
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.44 Score=41.81 Aligned_cols=126 Identities=14% Similarity=0.043 Sum_probs=79.7
Q ss_pred HHHHHHhhcccc-HHHHHHHHHHhhhcCCCcCHHHH--HHHHHHHHccCc-HHHHHHHHHHhhhC------CCC-CCHh-
Q 043969 14 NILICTCGEVGL-ARKVVERFIKSKLFNFRPFKNSY--NAILHALLGIRQ-YKLIEWVYQQMSDE------GYA-PDIL- 81 (300)
Q Consensus 14 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~-~~~~- 81 (300)
..++..+...++ .+.|+++|+++... .|...++ ..++..+...++ --+|.+++.+..+. ..+ .+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555666 57899999998776 3443332 233333333332 22344455444321 111 1211
Q ss_pred ---------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 043969 82 ---------TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMK 142 (300)
Q Consensus 82 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (300)
....-...+...|+++.|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122345667899999999999998773 4567899999999999999999999988773
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.73 E-value=0.21 Score=40.19 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES-----RGCNPNFLVYNTL 261 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 261 (300)
...++..+...|++++|...+..+.... +.+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3456677778888888888888877653 34777888888888888888888888887653 4888887664443
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.44 E-value=0.33 Score=39.08 Aligned_cols=55 Identities=7% Similarity=-0.060 Sum_probs=26.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEM 176 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (300)
++..+...|+++++...+..+... .+.+...+..++.++.+.|+..+|.+.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444445555555444444433 2334444555555555555555555555443
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.21 E-value=0.56 Score=29.14 Aligned_cols=61 Identities=10% Similarity=0.160 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 043969 96 LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (300)
.-++.+-++.+....+.|++.+....+++|.+.+++..|.++++-++... ......|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 33455555666666666666666666667766677766766666665542 22233455544
No 241
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.94 E-value=0.65 Score=30.61 Aligned_cols=64 Identities=9% Similarity=0.239 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043969 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSN 264 (300)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 264 (300)
|.-+..+-++.+....+.|++......+++|-+.+|+..|.++++-.+.+ ..+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 34456666666666777788888888888888888888888888877754 23334456666543
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.56 E-value=6.4e-05 Score=60.95 Aligned_cols=203 Identities=10% Similarity=0.086 Sum_probs=119.8
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043969 10 ARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCA 89 (300)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (300)
+.+|..|..+..+.+...+|++.|-+.. |...|..++.+..+.|.+++-...+...++..- ++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 4556777777777777777777665532 223677888888888888888877766555422 44455677888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc--------------------CCCCc
Q 043969 90 KYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV--------------------GFDPS 149 (300)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~ 149 (300)
|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+..- .-..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888877654433221 245444555555555556655555544333110 01235
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043969 150 VLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRG 229 (300)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 229 (300)
+.||-.+-.+|...+++.-|.-.--.++- ...-...++..|-..|.+++.+.+++.-... -+.....|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHH
Confidence 56777777777777776665544333331 1222344555666677777777766665533 23466667666666
Q ss_pred Hhcc
Q 043969 230 FCMA 233 (300)
Q Consensus 230 ~~~~ 233 (300)
|++-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 6653
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.37 E-value=1.6 Score=28.83 Aligned_cols=66 Identities=6% Similarity=0.028 Sum_probs=32.0
Q ss_pred CccccHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 183 PDVVCYTVMITSYIAAGE---LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 183 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
|+..+--....++.+..+ ..+++.++.++.+.+..-....+--+.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443344444444433 334555555555443211233344455555566666666666666555
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.24 E-value=4.1 Score=33.41 Aligned_cols=190 Identities=10% Similarity=0.076 Sum_probs=100.8
Q ss_pred cCcHHHHHHHHHHhhhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH----hcC
Q 043969 58 IRQYKLIEWVYQQMSDE-----GYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVL----GKG 128 (300)
Q Consensus 58 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 128 (300)
.++++.|++.+..+.+. ...........++..|...++++...+.+..+.+..-.. ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888777665542 233356667778888999999988888777665442222 22223333322 222
Q ss_pred CChHH--HHHHHHHHHHc---CCCC---cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCc---cccHHHHHHHH
Q 043969 129 DKPLA--ALNLLNHMKEV---GFDP---SVLHFTTLMDGLSRAGNLDACKYFFDEMANK--GCMPD---VVCYTVMITSY 195 (300)
Q Consensus 129 ~~~~~--a~~~~~~~~~~---~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~ 195 (300)
...+. -..+.+.+... .+-. .......|...+...|++.+|..++..+... +..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 11111111110 0111 1112245666777777777777777776432 21111 23455566677
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 196 IAAGELEKAQDLFDGMIT----KGQLPN--VFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777777777776532 111222 13345556666666777777666655543
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.02 E-value=1.7 Score=28.64 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 043969 63 LIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHV 124 (300)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (300)
+..+-++.+.....-|++....+.+.+|.+.+|+..|.++++.++..- .+...+|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 344555666666777788888888888888888888888887775542 3445567666654
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.79 E-value=8.4 Score=36.00 Aligned_cols=23 Identities=4% Similarity=-0.104 Sum_probs=13.3
Q ss_pred HHHHHHHHccCcHHHHHHHHHHh
Q 043969 49 NAILHALLGIRQYKLIEWVYQQM 71 (300)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~ 71 (300)
-.+..++...|++++|.+.|++.
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455556666666666666544
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.61 E-value=3.8 Score=38.25 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=79.5
Q ss_pred cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-----------------------ccccHHHHHHHHHhcCCHHHHH
Q 043969 149 SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP-----------------------DVVCYTVMITSYIAAGELEKAQ 205 (300)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~~~~a~ 205 (300)
+....-.+..++...|++++|...|++.-.. +.. -..-|..++..+.+.+.++.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 4433345667788899999999999764211 100 1123667788888888888888
Q ss_pred HHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 043969 206 DLFDGMITKGQLPN----VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLA 272 (300)
Q Consensus 206 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 272 (300)
++-....+....-+ ...|..+..++...|++++|...+-.+.+... -...+..|+..++..|..+
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 88777665422112 12578888999999999999888877766533 3455666666666555443
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.85 E-value=1.4 Score=30.33 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 043969 115 FHTYNILLHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
.+.--.+..+|.+.+++++|+.+++.+...
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 344455777888888888888888776443
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.60 E-value=9.6 Score=34.53 Aligned_cols=155 Identities=13% Similarity=0.134 Sum_probs=81.4
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH--HHHhCCCHHHHHHHHHHHHhCCCCCccccHH--HHHHHHHhcC
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD--GLSRAGNLDACKYFFDEMANKGCMPDVVCYT--VMITSYIAAG 199 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~ 199 (300)
.+...|+.+....++..+.+.. +......+.- ++...|+.+.+..+.+.+.... .|....-. .+.-+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence 3456677666666666665531 2222222333 3346677777777777776541 22222211 2334566677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 043969 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKL-AEAHEVI 278 (300)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~ 278 (300)
+.....+++..+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|..+.-..+.-+....|.. .++...+
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 8777777887777652 2233333333344444566555666665555432 34444333444444444432 5666777
Q ss_pred HHHHHc
Q 043969 279 RHMVEK 284 (300)
Q Consensus 279 ~~~~~~ 284 (300)
..+...
T Consensus 653 ~~L~~D 658 (963)
T 4ady_A 653 DPLTKD 658 (963)
T ss_dssp HHHHTC
T ss_pred HHHccC
Confidence 777643
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.32 E-value=0.99 Score=36.88 Aligned_cols=61 Identities=7% Similarity=0.044 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCCccccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKG--CMPDVVCYTVMITSYIAAGELEKAQDLFDGMI 212 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (300)
+...+...|.+.|+++.|.+.+.++...- ...-...+-.+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556666666666666666666665431 11123345555566666666666666666554
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.63 E-value=3.7 Score=28.29 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCcc-------ccHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH-HH
Q 043969 154 TTLMDGLSRAGNLDACKYFFDEMANK-GCMPDV-------VCYTVMITSYIAAGELEKAQDLFDGMITK-GQLPNVF-TY 223 (300)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~-~~ 223 (300)
-.-+..+...+.++.|+-+.+.+... +..|+. .++..+..++...+++..|...|++..+. ..-|... +.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33455666677777777776665432 112221 24456666777777777777777775432 1111111 11
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHHH
Q 043969 224 NSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLVS 292 (300)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~l~~ 292 (300)
..+. .. ..... .....++...--.+..+|.+.|++++|+.+++.+..+.-.+.+.-
T Consensus 104 ~~~~---~~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm 159 (167)
T 3ffl_A 104 PSTG---NS-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINM 159 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHH
T ss_pred cccc---cc-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHH
Confidence 0000 00 00000 001122334444466788899999999999888765553333333
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.21 E-value=3.6 Score=27.53 Aligned_cols=68 Identities=6% Similarity=0.027 Sum_probs=37.6
Q ss_pred CCccccHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 182 MPDVVCYTVMITSYIAAGE---LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.|+..+--....++.+..+ ..+++.+++.+...+..-.....--+.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3454444445555555543 3456666666665432212333444555666777777777777776664
No 253
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.83 E-value=0.0061 Score=49.81 Aligned_cols=216 Identities=10% Similarity=0.094 Sum_probs=141.4
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMC 88 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (300)
|+..|..++....+.|.+++.+..+...++..-.|.+. +.|+-+|++.++..+.++++. .||..-...+..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 66778889999999999999999998877764445444 689999999999776544331 356666677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC--------------------CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 043969 89 AKYRLGKLDQFHRLLDEMGRSG--------------------FSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDP 148 (300)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (300)
-|...|.++.|.-+|..+.... -..++.||..+-.+|...+++.-|.-.--.+.- .+
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---ha 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HA 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CS
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cH
Confidence 7888888777776665542211 134677888888888888888776544333332 12
Q ss_pred cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------CCHH
Q 043969 149 SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITK-GQL------PNVF 221 (300)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~------p~~~ 221 (300)
+ ....++..|-..|.+++.+.+++..... -......|+.|.-.|++- ++++..+-++..... +++ -...
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 2 2345677788889999988888887643 245667788888777765 445444444432221 111 1223
Q ss_pred HHHHHHHHHhccCCHHHHH
Q 043969 222 TYNSMIRGFCMAGKFDEAC 240 (300)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~ 240 (300)
.|..++-.|.+-.+++.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 3555555666555665543
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.77 E-value=7.7 Score=31.63 Aligned_cols=98 Identities=10% Similarity=-0.080 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC---CCCCcccc--HH
Q 043969 117 TYNILLHVLGKGDKPLAALNLLNHMKEVG--FDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANK---GCMPDVVC--YT 189 (300)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 189 (300)
+...+...|.+.|++++|.+.+.++.... ...-...+-.+++.+...+++..+...+...... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56778888888999999999998887642 2333466777888888889999988888877432 22222211 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 190 VMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
.-...+...+++..|-..|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111233467888888888776544
No 255
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=87.96 E-value=2.6 Score=31.60 Aligned_cols=211 Identities=11% Similarity=0.084 Sum_probs=97.0
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH---hhHHHHHHHHH
Q 043969 15 ILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI---LTYNIVMCAKY 91 (300)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 91 (300)
+.+...++.|+.+.+..+++.-...+...+...+ +.+...+..|+.+-+. .+.+.|..++. .-.+. +...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~-L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGATP-FLLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCH-HHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCH-HHHHH
Confidence 4556667788887776666653222222122222 3444555667765444 44455554432 22223 33344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhh------------HHHH
Q 043969 92 RLGKLDQFHRLLDEMGRSGFSPDF---HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLH------------FTTL 156 (300)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~l 156 (300)
..|+.+-+ +.+.+.|..++. .-++.+ ...+..|+.+ +++.+.+.|..++... -...
T Consensus 81 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 81 IAGSVKLL----KLFLSKGADVNECDFYGFTAF-MEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp HHTCHHHH----HHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred HcCCHHHH----HHHHHcCCCCCccCcccCCHH-HHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcH
Confidence 56665544 444445544432 122233 3334456654 3444445444433210 0123
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCc---cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHh
Q 043969 157 MDGLSRAGNLDACKYFFDEMANKGCMPD---VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFT--YNSMIRGFC 231 (300)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~ 231 (300)
+...+..|+.+-+..+++. .|..++ ..-.+.+.. .+..++.....++++.+.+.|..++... -...+...+
T Consensus 152 L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 3344556676655544432 133332 222333333 3455555445566666666766554321 112233345
Q ss_pred ccCCHHHHHHHHH
Q 043969 232 MAGKFDEACTMMK 244 (300)
Q Consensus 232 ~~~~~~~a~~~~~ 244 (300)
+.|+.+-+..+++
T Consensus 228 ~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 228 EKKHLGLVQRLLE 240 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 5677655444443
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.08 E-value=4.8 Score=26.54 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=47.1
Q ss_pred CcCHHHHHHHHHHHHccCc---HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 043969 42 RPFKNSYNAILHALLGIRQ---YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFH 116 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (300)
.|+..+--....+++++.+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+. .|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 4555543334445555544 4567788888877653223555666667888888888888888888776 45543
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.82 E-value=12 Score=30.73 Aligned_cols=208 Identities=8% Similarity=0.058 Sum_probs=123.7
Q ss_pred cccHHHHHHHHHHhhh-----cCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHH----Hh
Q 043969 23 VGLARKVVERFIKSKL-----FNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDE-GYAPDILTYNIVMCAK----YR 92 (300)
Q Consensus 23 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~ 92 (300)
.++++.|++.+....+ .+..........++..|...++++...+.+..+.+. |..+. ....++..+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 3788888887755432 233444557888999999999999988877766554 33222 223333322 22
Q ss_pred cCCHHH--HHHHHHHHHh--CC-CCCC---HhHHHHHHHHHhcCCChHHHHHHHHHHHHc--CCCCc---HhhHHHHHHH
Q 043969 93 LGKLDQ--FHRLLDEMGR--SG-FSPD---FHTYNILLHVLGKGDKPLAALNLLNHMKEV--GFDPS---VLHFTTLMDG 159 (300)
Q Consensus 93 ~~~~~~--a~~~~~~~~~--~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~ 159 (300)
....+. -..+.+.+.. .| +-.. ......|...+...|++.+|.+++..+... +.... ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333222 1222222111 11 1111 123356778889999999999999998643 22211 2456677888
Q ss_pred HHhCCCHHHHHHHHHHHHh----CCCCCc--cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 043969 160 LSRAGNLDACKYFFDEMAN----KGCMPD--VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMA 233 (300)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 233 (300)
|...+++.+|..++..+.. ....|+ ...+...+..+...+++.+|-. .|..+...+...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~---------------~y~e~~~~~~~~ 251 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ---------------YLQEIYQTDAIK 251 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH---------------HHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH---------------HHHHHHhccccc
Confidence 9999999999999988642 211222 1234555555566666666543 366677777777
Q ss_pred CCHHHHHHHHHHHH
Q 043969 234 GKFDEACTMMKEME 247 (300)
Q Consensus 234 ~~~~~a~~~~~~~~ 247 (300)
++......++..+.
T Consensus 252 ~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 252 SDEAKWKPVLSHIV 265 (445)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 87766655555443
No 258
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=86.27 E-value=11 Score=29.83 Aligned_cols=62 Identities=19% Similarity=0.418 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcC
Q 043969 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK--LAEAHEVIRHMVEKG 285 (300)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~ 285 (300)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 466666677777777777777766532111 12333444444444332 345666666666666
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.93 E-value=8.6 Score=28.95 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=37.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 194 SYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
...+.|++++|++....-++... -|...-..+++.+|-.|++++|.+=++-..+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44567777777777776666533 36666677777777777777777777766654
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.62 E-value=19 Score=31.06 Aligned_cols=124 Identities=10% Similarity=0.084 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 043969 164 GNLDACKYFFDEMANKGCMPDVVCYTVM----ITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEA 239 (300)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (300)
.+.+.|...+....+.. ..+......+ .......+...++...+....... ++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888776442 2233222222 222233442455566666554432 3444455555556678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcChHHHHH
Q 043969 240 CTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKGKYIHLV 291 (300)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~l~ 291 (300)
...|+.|...... .....--+.+++...|+.++|..+|+++.+...|-.++
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~l 355 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMV 355 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHH
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHH
Confidence 9999888763211 23333345567888999999999999998766555544
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.50 E-value=26 Score=31.87 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=8.2
Q ss_pred HhcCCChHHHHHHHHHHHH
Q 043969 125 LGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~ 143 (300)
|+..|+.....+++..+.+
T Consensus 570 yaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 570 YAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTTSCCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHhcc
Confidence 4444444444444444443
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.07 E-value=18 Score=29.05 Aligned_cols=232 Identities=8% Similarity=-0.020 Sum_probs=128.8
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcC----HHHHHHHHHHHHccC-cHHHHHHHHHHhhhCCCCCCHhhH--
Q 043969 11 RTFNILICTCGEVGLARKVVERFIKSKLFNFRPF----KNSYNAILHALLGIR-QYKLIEWVYQQMSDEGYAPDILTY-- 83 (300)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 83 (300)
.....|...|.+.|++++..+++......-...+ ......++..+.... ..+.-.++..+..+..-. +-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3456677889999999999999988755321222 125667787776643 334444444444331100 11223
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHhcCCChHHHHHHHHHHHHc--CCCCcHhh
Q 043969 84 ----NIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD-----FHTYNILLHVLGKGDKPLAALNLLNHMKEV--GFDPSVLH 152 (300)
Q Consensus 84 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 152 (300)
.-++..|...|++.+|.+++..+.+.=-..| ..++..-+..|...++..++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2577889999999999999988865311112 345666677888999999999999877543 22233322
Q ss_pred HHH----HHHHHH-hCCCHHHHHHHHHHHHhC-C-C-CC---ccccHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCH
Q 043969 153 FTT----LMDGLS-RAGNLDACKYFFDEMANK-G-C-MP---DVVCYTVMITSYIAAGELEKAQDLFD-GMITKGQLPNV 220 (300)
Q Consensus 153 ~~~----l~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~p~~ 220 (300)
-.. -.-.+. ..+++..|...|-+..+. . . .| +...|..+... -.++..+...++. .....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccH
Confidence 211 122345 789999998888665422 1 0 11 11223222222 2233222222221 11111123556
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Q 043969 221 FTYNSMIRGFCMAGKFDEACTMMKEM 246 (300)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (300)
..+..++.+| ..+++.+...+++..
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 6666666665 445666655555543
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.38 E-value=9.8 Score=25.46 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=9.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q 043969 158 DGLSRAGNLDACKYFFDEMAN 178 (300)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~ 178 (300)
-++.+.|++++|.+..+.+.+
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444444444
No 264
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=81.20 E-value=14 Score=27.20 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=48.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC--CCCC----ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043969 156 LMDGLSRAGNLDACKYFFDEMANK--GCMP----DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRG 229 (300)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 229 (300)
-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456677777788887777766432 2221 111222233333333333344444444422 3455556666677
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 043969 230 FCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~ 248 (300)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777777777777765553
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.33 E-value=7.7 Score=28.91 Aligned_cols=208 Identities=14% Similarity=0.131 Sum_probs=98.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHH
Q 043969 50 AILHALLGIRQYKLIEWVYQQMSDEGYAPDIL---TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF---HTYNILLH 123 (300)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~ 123 (300)
..+...++.|+.+.+..++ +.|..++.. .-...+...+..|+.+-+. .+.+.|..++. .-.+.+ .
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L-~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGATPF-L 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHH-H
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHH-H
Confidence 3455566778876655554 444443321 1123444555677765444 44445544432 112222 2
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcH---hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcccc------------H
Q 043969 124 VLGKGDKPLAALNLLNHMKEVGFDPSV---LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC------------Y 188 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~ 188 (300)
..+..|+.+ +++.+.+.|..++. ...+. +...+..|+.+-+. .+.+.|..++... -
T Consensus 78 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 78 LAAIAGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALK----FLYKRGANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHHH----HHHHhCCCcccccccHHHHHhhccCC
Confidence 333445544 44455555554432 12222 33445667765444 4444444443220 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHH
Q 043969 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPN---VFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLV--YNTLVS 263 (300)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~ 263 (300)
...+...+..|+.+-+..+++.. |..++ ....+.+..+ +..++.....++++.+.+.|..++... -.+.+.
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 12344445677776666555431 33222 2222333333 334554445566677777776655321 123334
Q ss_pred HHHhcCCHHHHHHHHH
Q 043969 264 NLRNAGKLAEAHEVIR 279 (300)
Q Consensus 264 ~~~~~g~~~~a~~~~~ 279 (300)
..+..|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 4456677765555544
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.26 E-value=8.3 Score=23.94 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 043969 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244 (300)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (300)
..++|..+-+.+...+. ....--+-+..+.+.|++++|..+.+... .||...|..+-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45556555555555432 11111122234455666666655544332 455555554433 24555555555555
Q ss_pred HHHHC
Q 043969 245 EMESR 249 (300)
Q Consensus 245 ~~~~~ 249 (300)
++...
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55544
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.95 E-value=8.6 Score=23.92 Aligned_cols=77 Identities=9% Similarity=0.125 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 043969 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMK 244 (300)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (300)
..++|.-+-+.+...+. ....--+-+..+.+.|++++|..+.+... .||...|..+-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45556655555555432 11111122234455666666665554432 455555554433 24455555555554
Q ss_pred HHHHC
Q 043969 245 EMESR 249 (300)
Q Consensus 245 ~~~~~ 249 (300)
++...
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 55444
No 268
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.84 E-value=8.9 Score=32.00 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHCCC
Q 043969 202 EKAQDLFDGMITKGQ 216 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~ 216 (300)
++|+.+..+|+..|.
T Consensus 417 eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 417 QTVEYMVSRAIRDGV 431 (523)
T ss_dssp SCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCC
Confidence 457777777776553
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.69 E-value=14 Score=26.34 Aligned_cols=53 Identities=19% Similarity=0.128 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCCCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043969 166 LDACKYFFDEMANKGCMPD-VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 218 (300)
...+..+|..|...|+-.. ...|......+...|++++|.++|+.-++.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555555443222 2334445555555555555555555555554444
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.08 E-value=9.2 Score=23.75 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 229 GFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+...|++++|..+.+.+. .||...|.+|-. .+.|..+.+...+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555555555443222 455555544432 35555555555555555554
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.36 E-value=9.8 Score=23.67 Aligned_cols=51 Identities=10% Similarity=0.170 Sum_probs=23.6
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 229 GFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.+...|++++|..+.+.+. .||...|.+|-. .+.|..+.+...+.++..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3444555555555443222 345444444422 34455555555554554444
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.33 E-value=23 Score=28.00 Aligned_cols=78 Identities=9% Similarity=0.172 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK--FDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+.+.|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456677777778888888877777532111 12334444445444332 345677777777766655544444444444
Q ss_pred H
Q 043969 266 R 266 (300)
Q Consensus 266 ~ 266 (300)
.
T Consensus 299 ~ 299 (358)
T 3eiq_C 299 N 299 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=77.96 E-value=15 Score=27.65 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 043969 190 VMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~ 211 (300)
..+...+..|+.+-+..+++.-
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHcChHHHHHHHHHcC
Confidence 3444445667776666666543
No 274
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=77.10 E-value=14 Score=25.73 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=9.7
Q ss_pred hhccccHHHHHHHHHH
Q 043969 20 CGEVGLARKVVERFIK 35 (300)
Q Consensus 20 ~~~~~~~~~a~~~~~~ 35 (300)
.+..|+.+.+..++..
T Consensus 12 A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 12 AANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHTTCHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHc
Confidence 3456677666666654
No 275
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=75.98 E-value=25 Score=27.13 Aligned_cols=95 Identities=12% Similarity=0.204 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK--FDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+....++..+.+.|+-+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456777788888999998888887532111 23344455555555433 456777888887766655554444444433
Q ss_pred HhcCC----HHHHHHHHHHHHH
Q 043969 266 RNAGK----LAEAHEVIRHMVE 283 (300)
Q Consensus 266 ~~~g~----~~~a~~~~~~~~~ 283 (300)
....+ ...|..++.++..
T Consensus 248 ~~l~Dl~lDiP~A~~~la~~v~ 269 (307)
T 2zu6_B 248 NEIPDINLDVPHSYSVLERFVE 269 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHHH
Confidence 33322 2345555544443
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.05 E-value=20 Score=25.60 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043969 128 GDKPLAALNLLNHMKEVGFDP-SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP 183 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (300)
.+....+..+|..|...|+-- -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344567778888887766533 34556777777778888888888888887776555
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.51 E-value=32 Score=27.66 Aligned_cols=230 Identities=7% Similarity=-0.051 Sum_probs=129.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhC-CCCC---CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHhHH---
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDE-GYAP---DILTYNIVMCAKYRL-GKLDQFHRLLDEMGRSGFSPDFHTY--- 118 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--- 118 (300)
....+...|.+.|+.++..+++.....- +.-| .......++..+... +..+.-.++..+..+.. .....+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5677889999999999999888876542 1111 233456677777664 33444444444433221 0111222
Q ss_pred ---HHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-----HhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCccccH
Q 043969 119 ---NILLHVLGKGDKPLAALNLLNHMKEVGFDPS-----VLHFTTLMDGLSRAGNLDACKYFFDEMANK--GCMPDVVCY 188 (300)
Q Consensus 119 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 188 (300)
..++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.+++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2678889999999999999998876411112 234566678889999999999999877543 222232222
Q ss_pred HH--H--HHHHH-hcCCHHHHHHHHHHHHHC-C-C-CC---CHHHHHHHHHHHhccCCHHHHHHHHH-HHHHCCCCCCHH
Q 043969 189 TV--M--ITSYI-AAGELEKAQDLFDGMITK-G-Q-LP---NVFTYNSMIRGFCMAGKFDEACTMMK-EMESRGCNPNFL 256 (300)
Q Consensus 189 ~~--l--i~~~~-~~~~~~~a~~~~~~~~~~-~-~-~p---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 256 (300)
.. . ...+. ..+++..|...|-+..+. . . .| +...|..+..... ++..+...++. +....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhccccccccCCccHH
Confidence 11 1 22345 688999998888776432 1 1 11 1223433333322 22222222221 211111245556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 257 VYNTLVSNLRNAGKLAEAHEVIRH 280 (300)
Q Consensus 257 ~~~~li~~~~~~g~~~~a~~~~~~ 280 (300)
.+..++.+| ..+++.+..++++.
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~ 280 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKE 280 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHH
Confidence 666666664 55666666555554
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=74.29 E-value=19 Score=25.99 Aligned_cols=14 Identities=14% Similarity=-0.204 Sum_probs=6.0
Q ss_pred hccccHHHHHHHHH
Q 043969 21 GEVGLARKVVERFI 34 (300)
Q Consensus 21 ~~~~~~~~a~~~~~ 34 (300)
++.|+.+.+..+++
T Consensus 17 ~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 17 VVQGNLPAVHRLVN 30 (241)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33444444444443
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=73.78 E-value=18 Score=24.49 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMA 177 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (300)
...++.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3455555666666666666666553
No 280
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.53 E-value=29 Score=26.81 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=12.2
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHhc
Q 043969 103 LDEMGRSGFSPDFHTYNILLHVLGK 127 (300)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (300)
++...+.+.+++......++..+..
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3444444555555555555554443
No 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=73.23 E-value=9.9 Score=26.59 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=7.7
Q ss_pred HHHHHHHHHCCCCCC
Q 043969 240 CTMMKEMESRGCNPN 254 (300)
Q Consensus 240 ~~~~~~~~~~~~~~~ 254 (300)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555544
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=72.50 E-value=9 Score=27.63 Aligned_cols=18 Identities=0% Similarity=-0.084 Sum_probs=8.7
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 043969 263 SNLRNAGKLAEAHEVIRH 280 (300)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~ 280 (300)
....+.|+.+-+.-+++.
T Consensus 215 ~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHh
Confidence 334555665554444443
No 283
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=71.76 E-value=18 Score=24.46 Aligned_cols=97 Identities=10% Similarity=0.189 Sum_probs=56.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043969 187 CYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK--FDEACTMMKEMESRGCNPNFLVYNTLVSN 264 (300)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 264 (300)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+.+.|+-+.......+-..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 3567788888899999999999887532111 23344455555555332 45677788888777665554443333333
Q ss_pred HHhcC----CHHHHHHHHHHHHHc
Q 043969 265 LRNAG----KLAEAHEVIRHMVEK 284 (300)
Q Consensus 265 ~~~~g----~~~~a~~~~~~~~~~ 284 (300)
+.... |...|..++.++...
T Consensus 90 l~~ldDl~lDiP~A~~~la~~v~~ 113 (152)
T 2ion_A 90 YNEIPDINLDVPHSYSVLERFVEE 113 (152)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHhChHhccCccchHHHHHHHHHH
Confidence 33332 233455555555543
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.61 E-value=18 Score=23.61 Aligned_cols=82 Identities=9% Similarity=0.160 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043969 188 YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGK--FDEACTMMKEMESRGCNPNFLVYNTLVSNL 265 (300)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (300)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+.+..++..+.+.|+-+.......+-..+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 456777888888888888888887522111 22334444555555432 456777777777766554444444443333
Q ss_pred HhcCC
Q 043969 266 RNAGK 270 (300)
Q Consensus 266 ~~~g~ 270 (300)
....+
T Consensus 89 ~~l~D 93 (129)
T 2nsz_A 89 NEIPD 93 (129)
T ss_dssp HHHHH
T ss_pred hhChH
Confidence 33333
No 285
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=71.58 E-value=26 Score=25.31 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=11.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 043969 227 IRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3345555555555555555544
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.24 E-value=19 Score=23.57 Aligned_cols=66 Identities=12% Similarity=0.277 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 043969 152 HFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGE--LEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p 218 (300)
....++.-|...|+.++|.+.++++..... ........+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 356788899999999999999999863211 122233344444444432 456777888777766543
No 287
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.19 E-value=35 Score=26.69 Aligned_cols=22 Identities=9% Similarity=0.298 Sum_probs=14.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043969 192 ITSYIAAGELEKAQDLFDGMIT 213 (300)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~ 213 (300)
+--|...++...|..+++...+
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3345667788888777666543
No 288
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=67.79 E-value=42 Score=26.26 Aligned_cols=168 Identities=12% Similarity=0.050 Sum_probs=96.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHhHHHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQF----HRLLDEMGRSGFSPDFHTYNILL 122 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~ 122 (300)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...+ .-+++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56667777788888888887764321 123334444333 33345566677788888877888
Q ss_pred HHHhcCCChH-HHHHHHHHHH----HcC--CCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHH
Q 043969 123 HVLGKGDKPL-AALNLLNHMK----EVG--FDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSY 195 (300)
Q Consensus 123 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (300)
..+.....-+ .-.++++++. +.| ..-++.....+...|.+.+++.+|+..|- . |-.++...|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 7776655321 1233333332 222 22355666778888899999988887772 2 3233445665555544
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 196 IAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
...+... .++... ...+--|...++...|..+++.+.+
T Consensus 178 ~~~~~~~--------------e~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESH--------------TAPLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGG--------------GHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCc--------------cHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4433211 112222 3334445667888888887766653
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=66.91 E-value=42 Score=25.90 Aligned_cols=198 Identities=13% Similarity=0.171 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 043969 83 YNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDK--PLAALNLLNHMKEVGFDPSVLHFTTLMDGL 160 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (300)
...++.-|...|+.++|...++++.... ........++......++ -+.+-.++..+.. ++-+.......+...+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 82 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 82 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 4678888999999999999998864322 123334444554443333 2345567777764 3333333333333333
Q ss_pred HhCCC----HHHHHHHH----HHHHhCCCCCccccHHHHHHHHHhcCC--HHHHHHHHHHHHHC--------C---CCCC
Q 043969 161 SRAGN----LDACKYFF----DEMANKGCMPDVVCYTVMITSYIAAGE--LEKAQDLFDGMITK--------G---QLPN 219 (300)
Q Consensus 161 ~~~~~----~~~a~~~~----~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~--------~---~~p~ 219 (300)
....+ ...|...+ ......++-|........-..-...|. ...|..++. +... | -..+
T Consensus 83 ~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~-~~~~~~~~~~~WG~~~~~~~ 161 (307)
T 2zu6_B 83 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLS-MSKGGKRKDSVWGSGGGQQS 161 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHH-TCC----CCCSSCCCSTTSC
T ss_pred HhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhc-ccccHhHHhhhcCCCCCCCC
Confidence 32222 22333333 333334444332222111100000000 122222221 0000 1 0112
Q ss_pred H----HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcC
Q 043969 220 V----FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK--LAEAHEVIRHMVEKG 285 (300)
Q Consensus 220 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~ 285 (300)
. .....++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|
T Consensus 162 ~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 162 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSS 232 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC
Confidence 2 23567888899999999999999988632111 12344455555555433 567788898888877
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.52 E-value=22 Score=25.47 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=88.5
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhh---HHHHHHHHHhc
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILT---YNIVMCAKYRL 93 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 93 (300)
+...++.|+.+.+..+++.-.... .++... .+.+...+..|+.+-+..++ +.|..++... -...+...+..
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g-~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVR-QPDKEN-VTLLHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS-CCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcC-CCCCCC-CCHHHHHHHhCCHHHHHHHH----HcCCcchhhcCCcCCChhHHHHHc
Confidence 334556778766666665422111 112111 23455566677766555444 4443322111 11233444556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH---hhHHHHHHHHHhCCCHH
Q 043969 94 GKLDQFHRLLDEMGRSGFSPDF---HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV---LHFTTLMDGLSRAGNLD 167 (300)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 167 (300)
|+.+-+. .+.+.|..++. ...+. +...+..|+.+ +++.+.+.|..++. ...+.+..+....+..+
T Consensus 87 ~~~~~v~----~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 87 GHLSMVV----QLMKYGADPSLIDGEGCSC-IHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp TCHHHHH----HHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred CCHHHHH----HHHHcCCCCcccCCCCCCH-HHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence 7665443 34444544432 12222 33334456654 34444444443332 22233333333333222
Q ss_pred HHHHHHHHHHhCCCCCcccc---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHH
Q 043969 168 ACKYFFDEMANKGCMPDVVC---YTVMITSYIAAGELEKAQDLFDGMITKGQLPNVF---TYNSMIRGFCMAGKFDEACT 241 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~ 241 (300)
.. +.+.+.|..++... -...+...+..|+.+-+..+++. |..++.. -. ..+....+.|+.+-+..
T Consensus 158 -~~---~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~ 228 (240)
T 3eu9_A 158 -PT---RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGE-SALDLAKQRKNVWMINH 228 (240)
T ss_dssp -TH---HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSC-BHHHHHHHTTCHHHHHH
T ss_pred -HH---HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCC-CHHHHHHHcCcHHHHHH
Confidence 22 23333443333221 11234455667777655555443 4433321 11 12333455566665555
Q ss_pred HHHHH
Q 043969 242 MMKEM 246 (300)
Q Consensus 242 ~~~~~ 246 (300)
+++..
T Consensus 229 L~~~~ 233 (240)
T 3eu9_A 229 LQEAR 233 (240)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 54443
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=66.33 E-value=33 Score=24.59 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=16.7
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCC
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPD 79 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (300)
.+...+..|+.+.+..+++.+.+.|..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 34445566777766666666655554443
No 292
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.60 E-value=45 Score=25.80 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=9.4
Q ss_pred HHhcCCHHHHHHHHHHH
Q 043969 195 YIAAGELEKAQDLFDGM 211 (300)
Q Consensus 195 ~~~~~~~~~a~~~~~~~ 211 (300)
|...++...|..+++..
T Consensus 198 yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 198 YLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHTTBHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 34455666666665544
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=65.48 E-value=7.8 Score=28.61 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=11.5
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 043969 262 VSNLRNAGKLAEAHEVIRHM 281 (300)
Q Consensus 262 i~~~~~~g~~~~a~~~~~~~ 281 (300)
+...+..|+.+-+..++++-
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhC
Confidence 33445678876655555543
No 294
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.31 E-value=67 Score=27.70 Aligned_cols=152 Identities=9% Similarity=-0.046 Sum_probs=84.0
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhhH----HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHH
Q 043969 130 KPLAALNLLNHMKEVGFDPSVLHF----TTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQ 205 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 205 (300)
+++.|...+....... ..+.... ..+.......+...++...+...... .++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777775432 2222222 22222333344244555555554433 233333444555555678888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH------------CCCCC-------C---HH-----HH
Q 043969 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES------------RGCNP-------N---FL-----VY 258 (300)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~~~-------~---~~-----~~ 258 (300)
..|..|..... ......--+.+++...|+.++|..+|+.+.. .|.++ + .. .-
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 88888765321 1333344456677778888888888776643 12211 0 00 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 259 NTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 259 ~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
..-+..+...|....|...+..+.+..
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~~~ 411 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVKSK 411 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHhcC
Confidence 122345678888888888888876543
No 295
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=64.00 E-value=14 Score=28.92 Aligned_cols=25 Identities=4% Similarity=0.014 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHH
Q 043969 118 YNILLHVLGKGDKPLAALNLLNHMK 142 (300)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (300)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566777777788888887777774
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=61.94 E-value=22 Score=25.56 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=26.7
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043969 230 FCMAGKFDEACTMMKEMESRGCNPNFL--VYNTLVSNLRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~ 284 (300)
.++.|+.+-+ +.+.+.|..++.. .-.+.+......|+.+.++++.+.+.++
T Consensus 184 A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 184 AARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445665433 3334445444321 1122334446677777888887777653
No 297
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=60.13 E-value=36 Score=27.01 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc---HhhHHHHHHHHHhCCCH--HHHHHHHHHHHhCCC
Q 043969 117 TYNILLHVLGKGDKPLAALNLLNHMKEVGFDPS---VLHFTTLMDGLSRAGNL--DACKYFFDEMANKGC 181 (300)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 181 (300)
....++.-|...|+.++|.+.++++.. |+ ......++......++. +.+-.++..+...++
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 456677778888888888888888752 22 22233333333333332 344455555555443
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.67 E-value=48 Score=24.13 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043969 202 EKAQDLFDGMITKGQLP-NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNP 253 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (300)
+.+.++|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35556666666654432 23445555556666666666666666666655454
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.65 E-value=38 Score=22.94 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCCC-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043969 134 ALNLLNHMKEVGFDP-SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP 183 (300)
Q Consensus 134 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (300)
+..+|..|...|+-. -...|......+...|++++|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555444322 22334444455555555555555555555544333
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.52 E-value=40 Score=22.83 Aligned_cols=71 Identities=11% Similarity=0.002 Sum_probs=49.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH
Q 043969 77 APDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPD-FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV 150 (300)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (300)
+-|+.-...-+.-.-.. +++..+|..|...|+-.. ...|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 65 knD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp TTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44555555444332223 337888999988876554 445777788888899999999999998888766654
No 301
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=57.21 E-value=41 Score=22.57 Aligned_cols=38 Identities=5% Similarity=0.080 Sum_probs=16.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
..+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 38 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 38 RSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33334444444444444433334444444444444443
No 302
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=57.06 E-value=38 Score=22.20 Aligned_cols=55 Identities=18% Similarity=0.095 Sum_probs=28.7
Q ss_pred cCCCcCHHHHHHHHHHHHccC-cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 39 FNFRPFKNSYNAILHALLGIR-QYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
.|.+++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 12 ~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 12 AGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp TTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44444432 233444454444 55567777777766665555555555555555444
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.03 E-value=44 Score=22.94 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043969 169 CKYFFDEMANKGCMPD-VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPN 219 (300)
Q Consensus 169 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 219 (300)
...+|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455666655544332 23445555555566666666666666666555553
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.26 E-value=26 Score=23.96 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=30.0
Q ss_pred hhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhC--CCCCCHhhHHHHHHHHHhcC
Q 043969 37 KLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDE--GYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 37 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 94 (300)
...|.+++. .-..++..+...+..-.|.++++.+.+. ++..+..|...-+..+...|
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334544443 2234455555555566666666666655 54445555444455555554
No 305
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=55.87 E-value=48 Score=23.00 Aligned_cols=90 Identities=11% Similarity=-0.056 Sum_probs=40.7
Q ss_pred hccccHHHHHHHHHHhhhcCCCcC-HHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh---hHHHHHHHHHh-cCC
Q 043969 21 GEVGLARKVVERFIKSKLFNFRPF-KNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDIL---TYNIVMCAKYR-LGK 95 (300)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~~~ 95 (300)
++.|+.+....++..-.. ..+ ..-+ +.+...+..|..+.-.++.+.+++.|..++.. -.+.|..++.. ..+
T Consensus 14 a~~g~~~~~~~l~~~~~~---~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYE---DKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHSCHHHHHHHHHHSSS---CHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHhcCcc---cccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Confidence 455676666655544211 111 1112 33444455565555555666666666555432 12223222221 223
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 043969 96 LDQFHRLLDEMGRSGFSPD 114 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~ 114 (300)
.....++.+.+.+.|..++
T Consensus 90 ~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHHHHHHHCCCCCC
Confidence 3334455555555555443
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=55.57 E-value=32 Score=22.94 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 61 YKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
.-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4456666666666555555555444444444444
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.40 E-value=7.6 Score=28.69 Aligned_cols=54 Identities=11% Similarity=-0.033 Sum_probs=25.3
Q ss_pred HHhhccccHHHHHHHHHHhhhcCCCcCHH-------HHHHHHHHHH--ccCcHHHHHHHHHHh
Q 043969 18 CTCGEVGLARKVVERFIKSKLFNFRPFKN-------SYNAILHALL--GIRQYKLIEWVYQQM 71 (300)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 71 (300)
...++.|+.+.+..+++.+...+..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34445566666555555443333333322 2233333332 456666665555543
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=55.15 E-value=44 Score=22.39 Aligned_cols=44 Identities=25% Similarity=0.167 Sum_probs=23.8
Q ss_pred HHHHHHccC-cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 51 ILHALLGIR-QYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 51 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
++..+...+ ..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 444444444 45556666666666655555555544455554444
No 309
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.94 E-value=87 Score=25.66 Aligned_cols=27 Identities=15% Similarity=-0.028 Sum_probs=14.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMG 107 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (300)
+......++.. ..|+..++..+++.+.
T Consensus 193 ~~~al~~L~~~--~~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 193 PDETRRAIAEL--VNGDARRALNTLEMMA 219 (447)
T ss_dssp CHHHHHHHHHH--HCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 44444444443 3566666666666554
No 310
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=54.90 E-value=54 Score=23.28 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=12.4
Q ss_pred HHHhhccccHHHHHHHHHHh
Q 043969 17 ICTCGEVGLARKVVERFIKS 36 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~ 36 (300)
+...++.|+.+.+..++..-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44455667777776666653
No 311
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.82 E-value=41 Score=24.48 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCc-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043969 168 ACKYFFDEMANKGCMPD-VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLP 218 (300)
Q Consensus 168 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 218 (300)
....+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455666655544332 2344555555556666666666666665555555
No 312
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.64 E-value=46 Score=22.33 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555554444444444444444444444
No 313
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.25 E-value=30 Score=20.12 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=33.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043969 211 MITKGQLPNVFTYNSMIRGFCMAG-KFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGK 270 (300)
Q Consensus 211 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 270 (300)
+.+.|..++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445666655543 33445554443 445566677777665555566666666666665553
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=54.21 E-value=43 Score=21.94 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555544445555444455444444
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.55 E-value=48 Score=22.01 Aligned_cols=44 Identities=14% Similarity=0.038 Sum_probs=22.3
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
++..+...+..-.|.++++.+.+.++..+..|..-.+..+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33344444445556666666665554445554444444444444
No 316
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=52.19 E-value=74 Score=24.01 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=25.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 043969 91 YRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKE 143 (300)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (300)
.+.|++++++.....-.+.. |.|...-..++..++-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555444444442 33444444555555555555555555554444
No 317
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.98 E-value=72 Score=23.86 Aligned_cols=202 Identities=8% Similarity=0.006 Sum_probs=96.9
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH---hhHHHHHHHHHhc
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI---LTYNIVMCAKYRL 93 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 93 (300)
+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+..+ .+.|..++. .-++.+ ...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L-~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTAL-YYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHH-HHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHH-HHHHHc
Confidence 4445556776665555554 2222222112345555667776655444 445544432 222333 344566
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHh-hHHHHHHHHHhCCCHHHH
Q 043969 94 GKLDQFHRLLDEMGRSGFSPDF---HTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVL-HFTTLMDGLSRAGNLDAC 169 (300)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a 169 (300)
|+.+-+.-+++. |..++. .-+.+.+...+..|+.+- .+.+.+.|..+... .-.+.+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 776655544443 433332 121233444455666544 34444444333111 233445556678888877
Q ss_pred HHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 170 KYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
..+++.-..... .+..-.+..+...+..|+.+ +.+.+.+.|..|+.... .-+..|+.+-+.-+++.
T Consensus 178 ~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 178 ILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHc
Confidence 777766444322 12222233233445566644 44455566776665542 11345665555444443
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=51.64 E-value=55 Score=22.40 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=34.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 043969 223 YNSMIRGFCMAGKFDEACTMMKEMESRGCNP--NFLVYNTLVS-N-----LRNAGKLAEAHEVIRHMVE 283 (300)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 283 (300)
|...+..|- .|++-+|-+++++.=...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333333333 377777777777765543334 3455666666 2 1345777777777777655
No 319
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.62 E-value=36 Score=22.66 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 201 LEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555555444444444444444444444
No 320
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=51.39 E-value=25 Score=23.29 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 49 NAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555556667777777776665556655555555555554
No 321
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.12 E-value=57 Score=22.41 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCC-cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCc
Q 043969 134 ALNLLNHMKEVGFDP-SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPD 184 (300)
Q Consensus 134 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (300)
+..+|..|...|+-. -...|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 556777777765533 334566667777777888888888877777765553
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.93 E-value=52 Score=21.87 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043969 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNA 268 (300)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (300)
+..-.|.++++.+.+.+...+..|....++.+.+.
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 33344455555554443333333333333334333
No 323
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=49.33 E-value=65 Score=22.52 Aligned_cols=29 Identities=14% Similarity=-0.084 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 257 VYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 257 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
.++.+...|...|+.++|...+..--...
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 34555566777888888888777655444
No 324
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.19 E-value=66 Score=22.57 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHhccCC
Q 043969 219 NVFTYNSMIRGFCMAGK 235 (300)
Q Consensus 219 ~~~~~~~l~~~~~~~~~ 235 (300)
+...-...+.++.+.+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 325
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.19 E-value=76 Score=23.30 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=59.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHc--CCCC----cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHH
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEV--GFDP----SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMIT 193 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (300)
--++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++. . .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 3467888899999999999987653 2222 11222333444444333444555555553 3 445666777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 043969 194 SYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~ 214 (300)
.+.+.|+.++|.++|-+....
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHH
Confidence 889999999999999887653
No 326
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.06 E-value=29 Score=22.63 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=22.5
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLG 94 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (300)
++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444445556666666666554445555444444444444
No 327
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.34 E-value=31 Score=22.48 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=18.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
..+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 22 ~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33334445555555555444444444444455544444
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.07 E-value=1.7e+02 Score=26.85 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=13.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 043969 190 VMITSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~ 211 (300)
.+..+|...|++++|...|++.
T Consensus 845 v~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 845 LKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3445566666777777666653
No 329
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.96 E-value=72 Score=21.82 Aligned_cols=50 Identities=4% Similarity=-0.113 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHHHHcCCCC--cHhhHHHHHH-H-----HHhCCCHHHHHHHHHHHHh
Q 043969 129 DKPLAALNLLNHMKEVGFDP--SVLHFTTLMD-G-----LSRAGNLDACKYFFDEMAN 178 (300)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 178 (300)
|++-+|-++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665443333 3444555555 1 2345666666666665543
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=44.87 E-value=71 Score=21.74 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHc--CCCCcHhhHHHHHHHHHhCCC
Q 043969 106 MGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEV--GFDPSVLHFTTLMDGLSRAGN 165 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 165 (300)
+.+.|++++.. -..++..+...+.+-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34455555432 344455555555666677777776665 444454444444455555554
No 331
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=44.68 E-value=53 Score=20.22 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 204 AQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
|.++.+++...|+.|+..+...++..|..-+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3445555555566666666666666665544
No 332
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=44.45 E-value=1.1e+02 Score=23.75 Aligned_cols=216 Identities=16% Similarity=0.098 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 043969 44 FKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDI---LTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNI 120 (300)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (300)
|..-++.| ...+..|+.+.+..++ +.|..++. .-.+ .+...+..|+.+-+..+++ .|..++...-.+
T Consensus 17 d~~g~t~L-~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEKI-HVAARKGQTDEVRRLI----ETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLAS----VGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHHH-HHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHH----HCCCCCCBTTBC
T ss_pred CCCCCCHH-HHHHHcCCHHHHHHHH----HcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHH----CCCCccccCCCC
Confidence 33334433 3344556655544444 33433322 1122 2333445566544433333 332232211122
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcH--------------------hhHHHHHHHHHhCC--CHHHHHHHHHHHHh
Q 043969 121 LLHVLGKGDKPLAALNLLNHMKEVGFDPSV--------------------LHFTTLMDGLSRAG--NLDACKYFFDEMAN 178 (300)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 178 (300)
.+...+..|+.+-+..+++.....|..++. ...+.| ...+..| +.+-+..+++.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~~~v~~Ll~~--- 162 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLEMIKILVQL--- 162 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHSCGGGHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHcCCchHHHHHHHHHc---
Confidence 233334556666666666654444433332 112233 3344555 55544444433
Q ss_pred CCCCCccc---cHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043969 179 KGCMPDVV---CYTVMITSYIAAGELEKAQDLFDGMITK-GQLP---NVFTYNSMIRGFCMAGKFDEACTMMKEMESRGC 251 (300)
Q Consensus 179 ~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (300)
|..++.. -.+.| ...+..|+.+-+..+++.-... +..+ +..-.+.|. ..+..|+.+- ++.+.+.|.
T Consensus 163 -ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~ga 235 (364)
T 3ljn_A 163 -GASPTAKDKADETPL-MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDV----AMRFVEMGI 235 (364)
T ss_dssp -TCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHH----HHHHHTTTC
T ss_pred -CCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHH----HHHHHHcCC
Confidence 4433322 22333 3445677777666666543220 0001 112222233 3345566553 344445555
Q ss_pred CCCHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 043969 252 NPNFLV--YNTLVSNLRNAGKLAEAHEVIRH 280 (300)
Q Consensus 252 ~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 280 (300)
.++... -.+.+...+..|+.+-+.-+++.
T Consensus 236 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 544221 11223334566777666666554
No 333
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=44.42 E-value=35 Score=18.71 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhCCCCCccccHHHHHHHH
Q 043969 167 DACKYFFDEMANKGCMPDVVCYTVMITSY 195 (300)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (300)
++|.+.|.+|.+..-.++.-+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34445554444332233344555555444
No 334
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.06 E-value=86 Score=22.17 Aligned_cols=179 Identities=11% Similarity=0.041 Sum_probs=81.4
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHhcC
Q 043969 52 LHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDF---HTYNILLHVLGKG 128 (300)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 128 (300)
+...+..|+.+....+++.-...-..++..-.+.+. ..+..|+.+-+..+ .+.|..++. .-++.+. ..+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~-~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPLH-IAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHHHHHHH----HHTTCCSCCCCTTSCCHHH-HHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHHHHHHH----HHhCCCCCCcCCCCCCHHH-HHHHc
Confidence 555667788888887776543211112332333333 34566776544443 344544332 2222332 23344
Q ss_pred CChHHHHHHHHHHHHcCCCCcH---hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcccc--HHHHHHHHHhcCCHHH
Q 043969 129 DKPLAALNLLNHMKEVGFDPSV---LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVC--YTVMITSYIAAGELEK 203 (300)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~ 203 (300)
|+.+ +++.+.+.|..++. ...+ .+...+..|+.+-+..+ .+.|..++... -...+...+..|+.+-
T Consensus 84 ~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 154 (231)
T 3aji_A 84 GXDE----IVKALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIAVML----LEGGANPDAKDHYDATAMHRAAAKGNLKM 154 (231)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred CHHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 5554 34444455544332 1222 33344556776654444 34444444321 1123344456677665
Q ss_pred HHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043969 204 AQDLFDGMITKGQLPNV---FTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN 254 (300)
Q Consensus 204 a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (300)
+..+++ .|..++. .-.+. +...+..|+.+- ++.+.+.|..++
T Consensus 155 v~~Ll~----~g~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~ga~~~ 199 (231)
T 3aji_A 155 VHILLF----YKASTNIQDTEGNTP-LHLACDEERVEE----AKFLVTQGASIY 199 (231)
T ss_dssp HHHHHH----TTCCSCCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCSC
T ss_pred HHHHHh----cCCCccccCCCCCCH-HHHHHHCCCHHH----HHHHHHCCCCCC
Confidence 554443 4443332 11222 333345566543 344445565544
No 335
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=42.67 E-value=82 Score=21.84 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043969 133 AALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGC 181 (300)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (300)
.+..++..+.+.|+-.|...-...+....+.|.+. ...+-.++...|+
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI 98 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGI 98 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCC
Confidence 34445555555555444443344444443333221 2334444555554
No 336
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.25 E-value=89 Score=22.13 Aligned_cols=52 Identities=4% Similarity=-0.124 Sum_probs=23.6
Q ss_pred HHHhhccccHHHHHHHHHHh-hhcCCCcCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 043969 17 ICTCGEVGLARKVVERFIKS-KLFNFRPFKNSYNAILHALLGIRQYKLIEWVYQQ 70 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 70 (300)
+...++.|+.+.+..+++.. ...+ ..+..-++ .+...+..|+.+-+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVH-QRGAMGET-ALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCC-HHHHHHHcCCHHHHHHHHHc
Confidence 44445566666555555431 1111 11222222 33344456666665555544
No 337
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.88 E-value=36 Score=24.21 Aligned_cols=19 Identities=16% Similarity=0.580 Sum_probs=9.6
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 043969 193 TSYIAAGELEKAQDLFDGM 211 (300)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~ 211 (300)
..|.+.|.+++|.+++++.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHH
Confidence 3444555555555555553
No 338
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.68 E-value=55 Score=21.55 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=23.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC
Q 043969 120 ILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164 (300)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (300)
.++..+...+.+-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444455556666666665554445444444444444444
No 339
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=40.91 E-value=1.3e+02 Score=25.52 Aligned_cols=73 Identities=8% Similarity=-0.007 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043969 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274 (300)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 274 (300)
+.........++..+=.--+..-...++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|+++|+++.+
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 44455555555555422224556677788888888888888888777654222 33444 444567777777654
No 340
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=40.39 E-value=23 Score=22.83 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=34.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043969 47 SYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHR 101 (300)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (300)
.|.-.|...+.+++.+-|+++++-.++.| +...|.+.+-.|...=+++-+++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 34455666677777777777777777766 56667777766666655555544
No 341
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=40.02 E-value=91 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=10.3
Q ss_pred hcCCChHHHHHHHHHHHHcCCCC
Q 043969 126 GKGDKPLAALNLLNHMKEVGFDP 148 (300)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~ 148 (300)
+..|+.+.-.++.+.+.+.|..+
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCcchHHHHHHHHHHCCCCC
Confidence 33444444444444455544433
No 342
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.55 E-value=83 Score=21.01 Aligned_cols=58 Identities=10% Similarity=0.219 Sum_probs=26.2
Q ss_pred HHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCC
Q 043969 106 MGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAG 164 (300)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (300)
+.+.|++++.. -..++..+...+.+-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44455443322 22333444444445556666666655544444444444444444444
No 343
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=39.08 E-value=86 Score=22.08 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=22.4
Q ss_pred HHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccCcHHHHH
Q 043969 17 ICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIRQYKLIE 65 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 65 (300)
+...++.|+.+.+..+++.-.......+....+. +...+..|+.+-+.
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~ 53 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIP-LHWSVSFQAHEITS 53 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCH-HHHHHHTTCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCH-HHHHHHcCCHHHHH
Confidence 4445566777666666665333221223222233 33344556554433
No 344
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.00 E-value=89 Score=21.16 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 043969 132 LAALNLLNHMKEVGFDPSVLHFTTLMDG 159 (300)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (300)
+.+..+++.+.+.|+-.|...-...+..
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~ 74 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIAS 74 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 3344444444444444333333333333
No 345
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.94 E-value=1e+02 Score=21.96 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=30.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCC-----HHHHHHHHHHHHhCCC
Q 043969 127 KGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGN-----LDACKYFFDEMANKGC 181 (300)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 181 (300)
+..+++.|+-++.+|.+.| .|.......++-+.-.-|. ...|...++.....|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4567777777777777777 5555555555555544443 2234444444444554
No 346
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=38.19 E-value=43 Score=24.75 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=11.0
Q ss_pred HHccCcHHHHHHHHHHhhhCC
Q 043969 55 LLGIRQYKLIEWVYQQMSDEG 75 (300)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~ 75 (300)
.+..|+.+.+..+++...+.+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHhhcc
Confidence 344555555555555554443
No 347
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=37.75 E-value=73 Score=22.49 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043969 200 ELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMES 248 (300)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (300)
+.....++.+.++.. +.+..-.-.+|.++.+.|++++|.+++.++..
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555554443 11333344567777777777777777777664
No 348
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.33 E-value=1.9e+02 Score=24.38 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=43.3
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCcc--ccHH-HHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 150 VLHFTTLMDGLSRAGNLDACKYFFDEMANKGC-MPDV--VCYT-VMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
...+|.+++.|...+.++.|..+.....-... .++. ..|. .+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35678889999999999999999987741100 0111 1121 2344556678899999888887654
No 349
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=37.02 E-value=73 Score=24.69 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHH
Q 043969 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNFLVYNTLVSNL----RNAGKLAEAHEVIRH 280 (300)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~ 280 (300)
+++..+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|...-....-+++..+ .+..+.++..++++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
No 350
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.82 E-value=50 Score=17.65 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=10.2
Q ss_pred HHHhcCC--HHHHHHHHHHH
Q 043969 264 NLRNAGK--LAEAHEVIRHM 281 (300)
Q Consensus 264 ~~~~~g~--~~~a~~~~~~~ 281 (300)
++.+.|. ++.|++.+.+|
T Consensus 29 Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 29 ALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHh
Confidence 3444444 66666666655
No 351
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=36.26 E-value=75 Score=21.79 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMA 177 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (300)
...++.-|...++.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567778888888888888888875
No 352
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=35.91 E-value=91 Score=20.57 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.0
Q ss_pred hccccHHHHHHHH
Q 043969 21 GEVGLARKVVERF 33 (300)
Q Consensus 21 ~~~~~~~~a~~~~ 33 (300)
++.|+.+.+..++
T Consensus 16 ~~~g~~~~v~~ll 28 (165)
T 3twr_A 16 AKAGDVETVKKLC 28 (165)
T ss_dssp HHHTCHHHHHHHC
T ss_pred HHhCCHHHHHHHH
Confidence 3445554444444
No 353
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=35.35 E-value=1.2e+02 Score=21.60 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=16.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGL 160 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (300)
..+++.|+-++.+|.+.|-.|.......++-+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455555555555555555444444444443333
No 354
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.34 E-value=79 Score=19.49 Aligned_cols=29 Identities=3% Similarity=0.002 Sum_probs=14.5
Q ss_pred HHHHHhhhcCCCcCHHHHHHHHHHHHccC
Q 043969 31 ERFIKSKLFNFRPFKNSYNAILHALLGIR 59 (300)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 59 (300)
++.++...+|+.|+..+..-++..|...+
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 33344444455666555555555554443
No 355
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.04 E-value=66 Score=18.54 Aligned_cols=32 Identities=9% Similarity=0.246 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 043969 131 PLAALNLLNHMKEVGFDPSVLHFTTLMDGLSR 162 (300)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (300)
+-.+.++++.+.+.+...+..|....+..+.+
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 34455555555544333344443333444433
No 356
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.83 E-value=1e+02 Score=23.85 Aligned_cols=216 Identities=11% Similarity=0.011 Sum_probs=102.9
Q ss_pred chHHHHHHHHHhhccccHHHHHHHHHHhhhcCCCcCH---HHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043969 9 TARTFNILICTCGEVGLARKVVERFIKSKLFNFRPFK---NSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNI 85 (300)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (300)
|..-++ .+...+..|+.+-+..+++. |..++. ..+ +.+...+..|+.+-+..+++ .|..++...-..
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll~~----g~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLIET----GVSPTIQNRFGC-TALHLACKFGCVDTAKYLAS----VGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCC-CHHHHHHHHCCHHHHHHHHH----HCCCCCCBTTBC
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHHHc----CCCccccCCCCC-cHHHHHHHcCCHHHHHHHHH----CCCCccccCCCC
Confidence 333444 44555567887766666654 333332 222 33445556677765555444 343333322223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------------------hHHHHHHHHHhcCC--ChHHHHHHHHHHHH
Q 043969 86 VMCAKYRLGKLDQFHRLLDEMGRSGFSPDF--------------------HTYNILLHVLGKGD--KPLAALNLLNHMKE 143 (300)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 143 (300)
.+...+..|+.+-+..+++.....|..++. .-.+.|.. .+..| +.+- ++.+.+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~~----v~~Ll~ 161 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLEM----IKILVQ 161 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHHH----HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHHH----HHHHHH
Confidence 344455778888877777765544433322 11233333 33445 4443 333444
Q ss_pred cCCCCcHhh--HHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCC---ccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043969 144 VGFDPSVLH--FTTLMDGLSRAGNLDACKYFFDEMAN-KGCMP---DVVCYTVMITSYIAAGELEKAQDLFDGMITKGQL 217 (300)
Q Consensus 144 ~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (300)
.|..++... -.+.+...+..|+.+-+..+++.... .+..+ +..-.+.| ...+..|+.+-+..+ .+.|..
T Consensus 162 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~L----l~~gad 236 (364)
T 3ljn_A 162 LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRF----VEMGID 236 (364)
T ss_dssp HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHH----HTTTCC
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHH----HHcCCC
Confidence 454443211 12233344567887766666554322 01102 12222233 334567776654444 445554
Q ss_pred CCH---HHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 218 PNV---FTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 218 p~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
++. .-.+.+ ...+..|+.+-+..+++.
T Consensus 237 ~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 237 VNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 432 222233 333456777766666654
No 357
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.83 E-value=1.1e+02 Score=20.70 Aligned_cols=53 Identities=8% Similarity=0.200 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 043969 95 KLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPS 149 (300)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (300)
..+.+..+++.+.+.|.-.|..--...+....+.| .....+-.++...|+..+
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE 97 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH
Confidence 44556666777777776544444445555544433 234456666666666543
No 358
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.93 E-value=1.2e+02 Score=21.06 Aligned_cols=154 Identities=12% Similarity=-0.049 Sum_probs=70.8
Q ss_pred cCHHHHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 043969 43 PFKNSYNAILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILL 122 (300)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (300)
++...-...+..+.+.+..+ +...+..+... ++...-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 44444455555555555533 23333333332 35555555555555555532 2233333322 24555555556
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHH
Q 043969 123 HVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELE 202 (300)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (300)
.++.+.++.+. ...+..+.. .++..+-...+.++.+.++.+ +...+..+.+ .++...-...+.++.+.+. +
T Consensus 103 ~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 66666555433 233333332 345555555566666655543 3333333332 2344444555555555554 3
Q ss_pred HHHHHHHHHHH
Q 043969 203 KAQDLFDGMIT 213 (300)
Q Consensus 203 ~a~~~~~~~~~ 213 (300)
++...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34444444433
No 359
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.75 E-value=1.8e+02 Score=22.73 Aligned_cols=64 Identities=8% Similarity=-0.083 Sum_probs=38.0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHccC-cHHHHHHHHHHhhhCCCC
Q 043969 13 FNILICTCGEVGLARKVVERFIKSKLFNFRPFKNSYNAILHALLGIR-QYKLIEWVYQQMSDEGYA 77 (300)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~ 77 (300)
...++.-|...|+.++|...++++......| ..+...+..++-+.. ..+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4567788888899999999999885322212 113333333332221 245566777777766543
No 360
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.57 E-value=53 Score=21.51 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=10.4
Q ss_pred HHHhhccccHHHHHHHHHH
Q 043969 17 ICTCGEVGLARKVVERFIK 35 (300)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~ 35 (300)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455666666666555
No 361
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.44 E-value=1.2e+02 Score=20.92 Aligned_cols=115 Identities=9% Similarity=0.064 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 166 LDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
.+.+..++..+.+.|.--|...-...+....+.|.+ ....+-.++...|+. .......+..+......+.|..++++
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~--~~~I~~al~~~~~~de~e~a~~l~~K 125 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID--DNIAEDALILYTDKLQVEKGVTLAEK 125 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC--HHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC--HHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 345667777888887776666556667666554432 235566777888874 33444444332112224456666655
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 043969 246 MESR-GCNPNFLVYNTLVSNLRNAG-KLAEAHEVIRHMVE 283 (300)
Q Consensus 246 ~~~~-~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 283 (300)
-... .-.++.....-++..+.+.| .++.+..+++.+..
T Consensus 126 k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~ 165 (177)
T 3e3v_A 126 LANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDL 165 (177)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcC
Confidence 4322 11223344556666666666 46666667766543
No 362
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.21 E-value=2.9e+02 Score=25.16 Aligned_cols=159 Identities=10% Similarity=0.028 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhCC----CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHH
Q 043969 84 NIVMCAKYRLGK---LDQFHRLLDEMGRSG----FSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTL 156 (300)
Q Consensus 84 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (300)
..++...+..|. .+.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345566677776 456777787765432 445533 223333344566666666777776642 44455678
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhc-CCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhc
Q 043969 157 MDGLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAA-GELEKAQDLFDGMIT---KGQLPNVFTYNSMIRGFCM 232 (300)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~ 232 (300)
+.+++...+.....++++............ ...++.+.... ...+.|.+.+.+=.+ .........+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQD-ATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 889998999998888888776543212222 33344444332 224455555544211 1122233345667766655
Q ss_pred cCCHHHHHHHHHHHHH
Q 043969 233 AGKFDEACTMMKEMES 248 (300)
Q Consensus 233 ~~~~~~a~~~~~~~~~ 248 (300)
.-.-++-.+-++.+.+
T Consensus 844 ~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 844 RFSSEFELQQLEQFKK 859 (909)
T ss_dssp TCCSHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHh
Confidence 4433433444444443
No 363
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.94 E-value=2.1e+02 Score=23.39 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 043969 198 AGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAG 234 (300)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (300)
..+.+.|+..+.+|.+.|..|....-..+..+.-.-|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 4577777777777777776654444343444443333
No 364
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.49 E-value=75 Score=20.70 Aligned_cols=17 Identities=0% Similarity=0.005 Sum_probs=8.8
Q ss_pred HHHccCcHHHHHHHHHH
Q 043969 54 ALLGIRQYKLIEWVYQQ 70 (300)
Q Consensus 54 ~~~~~~~~~~a~~~~~~ 70 (300)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33445555555555544
No 365
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=31.41 E-value=64 Score=22.12 Aligned_cols=24 Identities=8% Similarity=0.340 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 043969 84 NIVMCAKYRLGKLDQFHRLLDEMG 107 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~ 107 (300)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445566666677777777766654
No 366
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=31.01 E-value=3.1e+02 Score=25.03 Aligned_cols=158 Identities=9% Similarity=0.057 Sum_probs=89.1
Q ss_pred HHHHHHHHccCc---HHHHHHHHHHhhhCC----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 043969 49 NAILHALLGIRQ---YKLIEWVYQQMSDEG----YAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNIL 121 (300)
Q Consensus 49 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (300)
..++...+..|. .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 345566666665 457778888776532 455543 33444555678877777788887765 345556778
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcC-CCCcHhhHHHHHHHHHhCC-CHHHHHHHHHHHHh---CCCCCccccHHHHHHHHH
Q 043969 122 LHVLGKGDKPLAALNLLNHMKEVG-FDPSVLHFTTLMDGLSRAG-NLDACKYFFDEMAN---KGCMPDVVCYTVMITSYI 196 (300)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~ 196 (300)
+.+++...+.....++++...... +++. .. ..++.+..... -.+.+.+.+..=-+ .....+...+..++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~-~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DA-TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GH-HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888889888888888776533 2322 22 23333333322 12334444432111 122334556788887776
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043969 197 AAGELEKAQDLFDGMIT 213 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~ 213 (300)
..-.-++-.+-++...+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 65443444444444443
No 367
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.00 E-value=92 Score=18.96 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043969 234 GKFDEACTMMKEMESRGCNPNFLVYNTLVSNLRNAGKLAEA 274 (300)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 274 (300)
...++|.++++.+...| ...|..++.++...|+.+-|
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 35566666666655542 24555666666555555444
No 368
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=30.93 E-value=75 Score=24.72 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=18.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 210 GMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 210 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...
T Consensus 218 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 218 HFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444444445555555544443
No 369
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=30.77 E-value=1.8e+02 Score=22.68 Aligned_cols=79 Identities=8% Similarity=0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHH--HHHHHH----HHhcCCHHHHHHHH
Q 043969 206 DLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPN-FLVY--NTLVSN----LRNAGKLAEAHEVI 278 (300)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~li~~----~~~~g~~~~a~~~~ 278 (300)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|.... ...+ .+++.. .....++++..+++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3555666778888888888888888888889999999999998765433 2222 222222 23457888888888
Q ss_pred HHHHHc
Q 043969 279 RHMVEK 284 (300)
Q Consensus 279 ~~~~~~ 284 (300)
+.+...
T Consensus 310 ~~~p~~ 315 (345)
T 2qfz_A 310 QNLPTA 315 (345)
T ss_dssp TSCSCT
T ss_pred HcCCCc
Confidence 776554
No 370
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.44 E-value=1.5e+02 Score=21.33 Aligned_cols=20 Identities=0% Similarity=-0.134 Sum_probs=8.9
Q ss_pred HccCcHHHHHHHHHHhhhCC
Q 043969 56 LGIRQYKLIEWVYQQMSDEG 75 (300)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~ 75 (300)
+..|+.+.+..+++.+.+.|
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 34444444444444444433
No 371
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=30.07 E-value=2.6e+02 Score=23.84 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHH
Q 043969 115 FHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDAC 169 (300)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (300)
..-...++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|.+.|+++.+
T Consensus 516 ndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 516 NDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 334555566666666666666666665544222 22233 344456666665543
No 372
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.90 E-value=1.6e+02 Score=21.26 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=13.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 043969 128 GDKPLAALNLLNHMKEVGFDPSVLHFTTLM 157 (300)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (300)
..+++.|+-++.+|.+.|-.|.......++
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi 77 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLI 77 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455555555554444444433333333
No 373
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=28.79 E-value=1.9e+02 Score=21.97 Aligned_cols=100 Identities=11% Similarity=0.073 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCCCccccH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043969 171 YFFDEMANKGCMPDVVCY--TVMITSYIAAGELEKAQDLFDGMITKGQLP---NVFTYNSMIRGFCMAGKFDEACTMMKE 245 (300)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (300)
.+.+.+.+.|..++.... .+.+...+..|..+.+..++.. .|..+ |..-.+.|..+ ++.|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 344445566655543221 1233444667777766555432 12222 22222233333 4556654 3444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043969 246 MESRGCNPNFLVYNTLVSNLRNAGKLAEAHEVIRHMVEKG 285 (300)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 285 (300)
+++.|..++..+ .+...++.|+.+ +.+-+++.|
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~G 324 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHG 324 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTT
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCc
Confidence 556777766544 233345566654 445556666
No 374
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=28.59 E-value=1.7e+02 Score=21.18 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 043969 97 DQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDP 148 (300)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (300)
+.+..+++.+.+.|.-.|..--...+....+.+.+ ....+-.++...|+++
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 33445555555555544433334444443331111 2344555555666543
No 375
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=28.56 E-value=82 Score=18.44 Aligned_cols=32 Identities=6% Similarity=0.150 Sum_probs=20.0
Q ss_pred CCCCCHhHHHHHHHHHhcCCChHHHHHHHHHH
Q 043969 110 GFSPDFHTYNILLHVLGKGDKPLAALNLLNHM 141 (300)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (300)
+++|+..||+-+...+-+..-..+++.+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34667777777777666665555555555544
No 376
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=28.45 E-value=1.7e+02 Score=21.16 Aligned_cols=53 Identities=6% Similarity=-0.045 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043969 130 KPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMP 183 (300)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (300)
..+.+..+++.+.+.|+-.|...-...+....+.+.+ ....+-.++...|+.+
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 3455667777777777776665555556555442222 3455666777777654
No 377
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=28.02 E-value=4.2e+02 Score=25.59 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 043969 96 LDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMDGLSRAGNLDACKYFFDE 175 (300)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (300)
.+...+.|.++.+.--..|.......+......+++..|++++.++.+.. |+...|..++..+...|- +-.....+.
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~w-~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALGH-EHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCC-HHHHHHHHh
Confidence 34455566666554322233333333334445778888888888887763 567777777776665553 333334433
Q ss_pred H
Q 043969 176 M 176 (300)
Q Consensus 176 ~ 176 (300)
+
T Consensus 1342 ~ 1342 (1354)
T 3lxu_X 1342 M 1342 (1354)
T ss_dssp H
T ss_pred h
Confidence 3
No 378
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=26.80 E-value=1.1e+02 Score=18.41 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043969 236 FDEACTMMKEMESRGCNPNFLVYNTLVSN 264 (300)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 264 (300)
++.|+..+++++.. +.-++..|...+..
T Consensus 10 ~~~A~~YvnkVK~r-F~~~p~~Y~~FL~I 37 (89)
T 1g1e_B 10 FNHAINYVNKIKNR-FQGQPDIYKAFLEI 37 (89)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HccChHHHHHHHHH
Confidence 34455555555543 22244444444443
No 379
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=26.75 E-value=51 Score=21.28 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 043969 185 VVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCMAGKFDEACTM 242 (300)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 242 (300)
...|--.|...+..++.+-|.++++-.++.| +...|...+-.|...=+++-++++
T Consensus 32 DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 32 DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3456667777777788888888888877765 667777777777777777666654
No 380
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=26.57 E-value=1.3e+02 Score=19.12 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCH
Q 043969 165 NLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMIT-KGQLPNVFTYNSMIRGFCMAGKF 236 (300)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~ 236 (300)
.+.+|..-+++.... .+|......++..+... ++.++++.+...+ .|. .+.++...++...+.|-.
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI 69 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLL 69 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCC
Confidence 456666666666543 33444444455443322 3444555544443 244 233444444444444443
No 381
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.33 E-value=3.3e+02 Score=23.80 Aligned_cols=82 Identities=16% Similarity=0.017 Sum_probs=40.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhc--
Q 043969 50 AILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGK-- 127 (300)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 127 (300)
....++.-.|+++.|.+.+-.. ...+..++...+.- .|-+.....++.. . .+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~~~~lls~-~-~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKIDSSTRLT-K-KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC---------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccCCCccccc-C-CC-cc-cccHHHHHHHHHHHh
Confidence 3455666678888888877643 23344444444433 2322211111100 0 00 11 2236667776654
Q ss_pred -CCChHHHHHHHHHHH
Q 043969 128 -GDKPLAALNLLNHMK 142 (300)
Q Consensus 128 -~~~~~~a~~~~~~~~ 142 (300)
..++.+|+++|--+.
T Consensus 368 ~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTCHHHHHHHHHGGG
T ss_pred hcCCHHHHHHHHHHHh
Confidence 578888888877773
No 382
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.20 E-value=2e+02 Score=22.90 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhcCCCcCHH--HHHHHHHHHHccCcHHHHHHHHH
Q 043969 15 ILICTCGEVGLARKVVERFIKSKLFNFRPFKN--SYNAILHALLGIRQYKLIEWVYQ 69 (300)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 69 (300)
+.+...+..|+.+-+..+++. |..|+.. ...+.+...+..|+.+-+..+++
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 345555667777665555544 3333221 11233444556677665554444
No 383
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.70 E-value=1.9e+02 Score=20.62 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHHCC
Q 043969 199 GELEKAQDLFDGMITKG 215 (300)
Q Consensus 199 ~~~~~a~~~~~~~~~~~ 215 (300)
.+.+.|+-.+.+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34555555555555554
No 384
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.68 E-value=1.7e+02 Score=20.06 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHhccCC
Q 043969 219 NVFTYNSMIRGFCMAGK 235 (300)
Q Consensus 219 ~~~~~~~l~~~~~~~~~ 235 (300)
+...-...+.++.+.|+
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444445555555544
No 385
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.65 E-value=4.1e+02 Score=24.39 Aligned_cols=108 Identities=11% Similarity=-0.014 Sum_probs=60.3
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------------
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFS------------------ 112 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 112 (300)
++..+...+..+-+.++...+. .++..--.+..+|...|++++|..+|++.- .|+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 4455555566555444332221 122222334456666666666666665542 1110
Q ss_pred -----CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH----hhHHHHHHHHHhCC
Q 043969 113 -----PDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSV----LHFTTLMDGLSRAG 164 (300)
Q Consensus 113 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 164 (300)
....-|..++..+.+.+.++-+.++-+...+.--+.|. ..|+.+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01235788899999999999998888877764222222 35666666665443
No 386
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.76 E-value=4.7e+02 Score=25.27 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=15.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 043969 197 AAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFC 231 (300)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (300)
.++++..|++++.++.+.. |+...|..++..+.
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~ 1328 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAING 1328 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHH
Confidence 4455555555555555432 34444444444443
No 387
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.66 E-value=2e+02 Score=20.47 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcc
Q 043969 163 AGNLDACKYFFDEMANKGCMPDV 185 (300)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~ 185 (300)
..+++.|+-.+.+|++.|..|..
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~ 42 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLY 42 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 45555666555566555544433
No 388
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=23.27 E-value=1.5e+02 Score=20.88 Aligned_cols=23 Identities=9% Similarity=0.378 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 043969 190 VMITSYIAAGELEKAQDLFDGMI 212 (300)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~~ 212 (300)
.+|.++.+.|++++|.++..++.
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555555555555544
No 389
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.17 E-value=2.1e+02 Score=20.45 Aligned_cols=19 Identities=11% Similarity=0.002 Sum_probs=10.7
Q ss_pred HHhcCCChHHHHHHHHHHH
Q 043969 124 VLGKGDKPLAALNLLNHMK 142 (300)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~ 142 (300)
.|.+.|.+++|.+++++..
T Consensus 126 VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC
T ss_pred HHHHccchHHHHHHHHHHh
Confidence 4555556666665555543
No 390
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.90 E-value=2.7e+02 Score=21.66 Aligned_cols=49 Identities=10% Similarity=-0.049 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043969 202 EKAQDLFDGMITKGQLPNV--FTYNSMIRGFCMAGKFDEACTMMKEMESRG 250 (300)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (300)
.+..++-..+..-+++|.. -+....+..+.+.+++..|..+.+++++.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444444444444432 234555666677777777777777777764
No 391
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=22.80 E-value=84 Score=24.47 Aligned_cols=81 Identities=11% Similarity=0.118 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhCC-----CCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChH
Q 043969 61 YKLIEWVYQQMSDEG-----YAPDIL---TYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPL 132 (300)
Q Consensus 61 ~~~a~~~~~~~~~~~-----~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (300)
-++|..+|..+.... ..++.. .+...+..+.+..+. ++++.+.+.|+.|...++.-++..+.+.=.++
T Consensus 170 E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 245 (334)
T 2qq8_A 170 TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD 245 (334)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred HHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence 467777777765431 122322 222233333333333 45667778888888888888888888888899
Q ss_pred HHHHHHHHHHHcC
Q 043969 133 AALNLLNHMKEVG 145 (300)
Q Consensus 133 ~a~~~~~~~~~~~ 145 (300)
.+.++++.+...|
T Consensus 246 ~~lriWD~~l~eg 258 (334)
T 2qq8_A 246 LACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998876
No 392
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.66 E-value=1.1e+02 Score=17.14 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043969 189 TVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCM 232 (300)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (300)
+.++..++...-.+.++..+.+..+.|. .+..+|-.-++.+++
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3344444444445555555555555543 244444444444433
No 393
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.65 E-value=2.2e+02 Score=20.47 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHHHHHHhc--CCChHHHHHHHHHHHHcCCCC---------
Q 043969 87 MCAKYRLGKLDQFHRLLDEMGRSGFSPDF-------HTYNILLHVLGK--GDKPLAALNLLNHMKEVGFDP--------- 148 (300)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~--------- 148 (300)
+...+..|+.+.+..+++.+...|..++. .-.+.|..+... .|+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 44456778888777777777666654433 233444444322 377777766666544432111
Q ss_pred -cHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCccc----------------cHHHHHHHHHhcCCHHHHHHHHH
Q 043969 149 -SVLHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDVV----------------CYTVMITSYIAAGELEKAQDLFD 209 (300)
Q Consensus 149 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~li~~~~~~~~~~~a~~~~~ 209 (300)
+....+.| ...+..|+.+-+..++ +.|..++.. -.+. +...+..|+.+-+..+++
T Consensus 86 ~d~~g~t~L-~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~g~tp-L~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 86 EFYQGHSAL-HIAIEKRSLQCVKLLV----ENGADVHLRACGRFFQKHQGTCFYFGELP-LSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp TTTTTCCHH-HHHHHTTCHHHHHHHH----HTTCCTTCCCCSGGGSCCSSSCCCSCSSH-HHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCHH-HHHHHcCCHHHHHHHH----HcCCCCCcccccccccccccccccCCCCH-HHHHHHcCCHHHHHHHHh
Confidence 12222333 3445667766555444 444444432 2233 344456777765555544
No 394
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=22.31 E-value=1.4e+02 Score=22.30 Aligned_cols=47 Identities=2% Similarity=-0.228 Sum_probs=27.5
Q ss_pred CcCHHHHHHHHHHHHccCc-HHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043969 42 RPFKNSYNAILHALLGIRQ-YKLIEWVYQQMSDEGYAPDILTYNIVMCAK 90 (300)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (300)
+.+..+.+.+..++.+.|- -.+....|+.+.+.+ +.+.-++.++++.
T Consensus 35 plspr~l~~~~k~ve~~g~~sPe~i~~f~ALse~~--~TP~D~~~ml~av 82 (262)
T 1d1d_A 35 PLEPKLITRLADTVRTKGLRSPITMAEVEALMSSP--LLPHDVTNLMRVI 82 (262)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSSHHHHHHHHHHTSC--CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHcCC--CChHHHHHHHHHH
Confidence 4455577777777766663 466666676544322 3445566666654
No 395
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.09 E-value=2.6e+02 Score=21.19 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=46.5
Q ss_pred HHHHHHHcCCCCcH---hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc---ccHHHHHHHHHhcCCHHHHHHHHHH
Q 043969 137 LLNHMKEVGFDPSV---LHFTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV---VCYTVMITSYIAAGELEKAQDLFDG 210 (300)
Q Consensus 137 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~ 210 (300)
+.+.+.+.|..++. .-.+ .+...+..|..+.+..++.. .|..++. .-.+.|.. .+..|+.+-+ +.
T Consensus 221 i~~lLl~~gad~n~~d~~g~t-~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~iv----~~ 291 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKT-PLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKKIA----EL 291 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCC-HHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHHHH----HH
T ss_pred HHHHHHHCCCCCCCcCCCCCC-HHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHHHH----HH
Confidence 34444555544432 1222 23344566776665544432 2222222 22233333 3556665543 33
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043969 211 MITKGQLPNVFTYNSMIRGFCMAGKFDEACTMMKEMESRGCNPNF 255 (300)
Q Consensus 211 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (300)
+.+.|..++..+ . +...++.|+.+ +.+-+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 445666666543 2 33334556654 44555666665553
No 396
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.78 E-value=2e+02 Score=19.73 Aligned_cols=138 Identities=11% Similarity=-0.027 Sum_probs=75.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 043969 79 DILTYNIVMCAKYRLGKLDQFHRLLDEMGRSGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPSVLHFTTLMD 158 (300)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (300)
+...-...+.++...++.+. ...+..+.. .++..+-...+.++.+.++.+.. ..+..+.. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHH
Confidence 55555555566666665433 333333333 35666767777777777765433 33333432 356666667777
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043969 159 GLSRAGNLDACKYFFDEMANKGCMPDVVCYTVMITSYIAAGELEKAQDLFDGMITKGQLPNVFTYNSMIRGFCM 232 (300)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 232 (300)
++.+.++.+ +...+..+... ++...-...+.++.+.|.. ++...+..+.+. ++...-...+.++.+
T Consensus 130 aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 130 ALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 777777654 33444444432 4555666677777777663 455555555543 344444444444433
No 397
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.72 E-value=1.4e+02 Score=18.05 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHHH
Q 043969 234 GKFDEACTMMKEMES 248 (300)
Q Consensus 234 ~~~~~a~~~~~~~~~ 248 (300)
|++-+|-+++++.=.
T Consensus 15 g~~~eaHEvlE~~W~ 29 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWL 29 (94)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 555555555555443
No 398
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.58 E-value=2.9e+02 Score=22.70 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCcc--------ccHH-HHHHHHHhcCCHHHHHHHHHHHHHC
Q 043969 153 FTTLMDGLSRAGNLDACKYFFDEMANKGCMPDV--------VCYT-VMITSYIAAGELEKAQDLFDGMITK 214 (300)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~-~li~~~~~~~~~~~a~~~~~~~~~~ 214 (300)
.+.+...|.+.++...+..+++.+...+..|+. .+|. -+...+...+++.+|.+-+......
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 577888999999999999999988776653332 2333 2344556788888888877776553
No 399
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.11 E-value=2.5e+02 Score=23.16 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=12.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHC
Q 043969 224 NSMIRGFCMAGKFDEACTMMKEMESR 249 (300)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (300)
+.+...|.+.++.+.+..+++.+...
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~ 205 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPK 205 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 44444455555555555555444443
No 400
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.08 E-value=1.7e+02 Score=18.70 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=12.0
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 043969 265 LRNAGKLAEAHEVIRHMVEK 284 (300)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~~ 284 (300)
+...++++.|.++...+...
T Consensus 71 al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHC
Confidence 35556666666666666543
No 401
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.06 E-value=2.3e+02 Score=22.59 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHH
Q 043969 51 ILHALLGIRQYKLIEWVYQQMSDEGYAPDILT--YNIVMCAKYRLGKLDQFHRLLD 104 (300)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 104 (300)
.+...+..|+.+-+..++ +.|..|+... ....+...+..|+.+-+..+++
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 445556678776655554 4455443221 1233444556777765555544
No 402
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.04 E-value=1.1e+02 Score=21.59 Aligned_cols=51 Identities=10% Similarity=-0.089 Sum_probs=24.9
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 043969 52 LHALLGIRQYKLIEWVYQQMSDEGYAPDILTYNIVMCAKYRLGKLDQFHRLL 103 (300)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (300)
+...+..|+.+.+..+++.-.......+..-.+.+. ..+..|+.+-+..++
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll 56 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLH-WSVSFQAHEITSFLL 56 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence 444566778777776666543321112333333333 344566665443333
No 403
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.92 E-value=2.5e+02 Score=20.43 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=14.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHc
Q 043969 122 LHVLGKGDKPLAALNLLNHMKEV 144 (300)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~ 144 (300)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 33566667777777777666553
No 404
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.82 E-value=78 Score=20.33 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHH
Q 043969 59 RQYKLIEWVYQQMSDEGYA-PDILTYNIVMCAK 90 (300)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 90 (300)
..+++|.+.+..|++.-+. -.+..||..+..+
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3566777777777654222 1566777777554
Done!