Citrus Sinensis ID: 043974

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MYYLNSFLFAVTLLLLSSNVSTALDCKLNNANPLKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFIDHDGWIAKLPSVL
cccHHHHHHHHHHHHHHcccccHHHcccccccccccccEEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEEccccccccccEEEEEcccEEEEccEEEEcccccccccccccccccccEEEEEEEccEEEEEEEEEEEcccccccccccEEEEccEEEEEccEEEcccEEEEEccEEEEEEcccccccccEEEEEccccccccccEEEEEccEEEEccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccccccccccccccccc
cccccHHHHcccccccccccccHHHHHHHHcccccccccEEEEcccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEcccccccEcEEEEEEEcccEEEEEEEEEcccccccHHHEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEEccccccccccEEEEEccccccccccEEEEEEcEEEcccccccccccHHHccEEEEEccccccccccccccccccccccEEEEHEHccccccccccccccccccccHHHHHHccHHHHHccccccccccccc
MYYLNSFLFAVTLLLLSSnvstaldcklnnanplkVAYTISvsrsgggnftkiqdainfipvnndqwiriqispeiyqekvtipqnkpciflegassrttkiqwgdhdttissptftslseNVVAKGILfqntynvppsyrqnQERMEVKQALAARIsgdksafyncgfaglqdtlfddhgrhyfhqCYIEGAIDFIFgngqsiyhncavnvtlkeylpekdygyitaqgrnstddpsgfvftscqflgsGKAYLGRAYGAFSRVIIVNSVLtdmvepqgwnawnhveheeNIEYAEARCrgagadtskrvswekhlsvdevkkftdssfidhdgwiaklpsvl
MYYLNSFLFAVTLLLLSSNVSTALDCKLNNANPLKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGadtskrvswekhlsvdevkkftdssfidhdgwiaklpsvl
MYYLNSFLFavtllllssnvstalDCKLNNANPLKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFIDHDGWIAKLPSVL
*YYLNSFLFAVTLLLLSSNVSTALDCKLNNANPLKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVP**************ALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFIDHDGWIAK*****
**YLNSFLFAVTLLLLSSNVSTA**********LKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFIDHDGWIAKLPSV*
MYYLNSFLFAVTLLLLSSNVSTALDCKLNNANPLKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFIDHDGWIAKLPSVL
*YYLNSFLFAVTLLLLSSNVSTALDCKLNNANPLKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFIDHDGWIAKL****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYYLNSFLFAVTLLLLSSNVSTALDCKLNNANPLKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFIDHDGWIAKLPSVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
Q3E9D3330 Probable pectinesterase 5 yes no 0.875 0.912 0.5 1e-84
Q4PSN0335 Probable pectinesterase 2 no no 0.904 0.928 0.485 2e-83
Q4PSQ5336 Probable pectinesterase 6 no no 0.877 0.898 0.491 9e-82
O64479339 Putative pectinesterase 1 no no 0.938 0.952 0.444 2e-76
O04953293 Putative pectinesterase 5 no no 0.723 0.849 0.478 3e-63
Q9SIJ9352 Putative pectinesterase 1 no no 0.840 0.821 0.404 1e-62
Q9ZQA3407 Probable pectinesterase 1 no no 0.860 0.727 0.397 4e-62
Q8VYZ3383 Probable pectinesterase 5 no no 0.854 0.767 0.397 6e-61
Q9LSP1344 Probable pectinesterase 6 no no 0.950 0.950 0.369 2e-59
O23038393 Probable pectinesterase 8 no no 0.877 0.768 0.395 5e-58
>sp|Q3E9D3|PME55_ARATH Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1 Back     alignment and function desciption
 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/304 (50%), Positives = 204/304 (67%), Gaps = 3/304 (0%)

Query: 38  YTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASS 97
           + + V +SG GNFT IQ AI+ +P+NN  W  I +   +Y+EK+TIPQ KP I + GA  
Sbjct: 27  FEVIVDQSGHGNFTTIQKAIDSVPINNTHWFFINVKAGLYREKITIPQKKPFIVIVGAGK 86

Query: 98  RTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARI 157
           R+T+++W DH +   SPTF +L++N V K I F N+YN P + + N+       A+AA I
Sbjct: 87  RSTRVEWDDHASLAQSPTFATLADNTVVKKITFANSYNFPSNGKINKNPRV--PAVAAFI 144

Query: 158 SGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEY 217
            GDKSAFY+ GFAG+QDTL+D  GRHYFH+C I+GA+DFI G+GQSIY +C + V L   
Sbjct: 145 GGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVIQV-LGGQ 203

Query: 218 LPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVE 277
           L     GYITAQGR + +D +GFVF +C   G GKAYLGRA+  +SRVI  NS LTD+V+
Sbjct: 204 LGPGVTGYITAQGRTNANDANGFVFINCLVHGFGKAYLGRAWRPYSRVIFYNSNLTDVVD 263

Query: 278 PQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFIDHDGWI 337
           P GW  WN+  +E+ + YAE  C G+G++TS+R  W K LS   V+   D SFI+  GW+
Sbjct: 264 PLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKWVKKLSASAVQHLADLSFINRGGWV 323

Query: 338 AKLP 341
             LP
Sbjct: 324 EDLP 327
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q4PSN0|PME29_ARATH Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSQ5|PME66_ARATH Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2 Back     alignment and function description
>sp|O64479|PME10_ARATH Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1 Back     alignment and function description
>sp|O04953|PME52_ARATH Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2 Back     alignment and function description
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
255548405 663 pectinesterase, putative [Ricinus commun 0.912 0.473 0.570 1e-103
255548397335 Pectinesterase-2 precursor, putative [Ri 0.968 0.994 0.521 2e-92
224122908339 predicted protein [Populus trichocarpa] 0.936 0.949 0.502 7e-91
255576760388 Pectinesterase-2 precursor, putative [Ri 0.959 0.850 0.488 3e-89
224124474324 predicted protein [Populus trichocarpa] 0.915 0.972 0.494 7e-86
449454131362 PREDICTED: probable pectinesterase 66-li 0.892 0.848 0.486 1e-84
297807937336 predicted protein [Arabidopsis lyrata su 0.906 0.928 0.495 2e-84
15239623330 putative pectinesterase 55 [Arabidopsis 0.875 0.912 0.5 8e-83
296090507341 unnamed protein product [Vitis vinifera] 0.898 0.906 0.485 3e-82
297831202335 predicted protein [Arabidopsis lyrata su 0.904 0.928 0.488 4e-82
>gi|255548405|ref|XP_002515259.1| pectinesterase, putative [Ricinus communis] gi|223545739|gb|EEF47243.1| pectinesterase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/321 (57%), Positives = 235/321 (73%), Gaps = 7/321 (2%)

Query: 23  ALDCKLNNANPLKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVT 82
           ALDC+L      KVA+T +V +SG GNFT IQ AIN +P  N QW+ IQISPE Y+EKVT
Sbjct: 349 ALDCQLQEFR--KVAFTYTVDKSGKGNFTTIQSAINSVPEGNTQWLCIQISPEKYREKVT 406

Query: 83  IPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQ 142
           IP+NKPCIFL+GA  + T I+WGDH+TT +S TF+S S+N++AKGI F+NTYN+     Q
Sbjct: 407 IPENKPCIFLKGAGRKLTIIEWGDHETTNTSATFSSYSDNIIAKGITFKNTYNL----LQ 462

Query: 143 NQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQ 202
             +R++ KQA++ARI GDK AFY C F G+QDTL+D+ GRH F +C+IEGA+DFIFG  +
Sbjct: 463 KPDRVDWKQAVSARIRGDKCAFYRCAFLGVQDTLWDEKGRHLFKKCFIEGAVDFIFGKAK 522

Query: 203 SIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAF 262
           S+Y  C + V +  Y PE + GYITAQ +  TD  SGFVF   +  G+GKAYLGRA+G +
Sbjct: 523 SVYERCLIYVNIGRYEPELE-GYITAQKKELTDHESGFVFKDSEINGTGKAYLGRAWGPY 581

Query: 263 SRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEV 322
           S VII N+ L+D+V PQGWNAW++V+ EEN  Y E   +GAGA+TS RV W K L+ DE+
Sbjct: 582 STVIIQNTTLSDVVVPQGWNAWDYVQQEENFTYVEVDNKGAGANTSNRVPWLKKLNADEL 641

Query: 323 KKFTDSSFIDHDGWIAKLPSV 343
            KF   SFID DGW+AKLP+ 
Sbjct: 642 SKFLSMSFIDSDGWLAKLPNT 662

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548397|ref|XP_002515255.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223545735|gb|EEF47239.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224122908|ref|XP_002318946.1| predicted protein [Populus trichocarpa] gi|222857322|gb|EEE94869.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576760|ref|XP_002529267.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223531256|gb|EEF33099.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224124474|ref|XP_002330032.1| predicted protein [Populus trichocarpa] gi|222871457|gb|EEF08588.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454131|ref|XP_004144809.1| PREDICTED: probable pectinesterase 66-like [Cucumis sativus] gi|449490909|ref|XP_004158746.1| PREDICTED: probable pectinesterase 66-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297807937|ref|XP_002871852.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297317689|gb|EFH48111.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15239623|ref|NP_197400.1| putative pectinesterase 55 [Arabidopsis thaliana] gi|122214347|sp|Q3E9D3.1|PME55_ARATH RecName: Full=Probable pectinesterase 55; Short=PE 55; AltName: Full=Pectin methylesterase 55; Short=AtPME55; Flags: Precursor gi|332005253|gb|AED92636.1| putative pectinesterase 55 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296090507|emb|CBI40838.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297831202|ref|XP_002883483.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329323|gb|EFH59742.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2179659330 AT5G18990 [Arabidopsis thalian 0.875 0.912 0.5 3.7e-80
TAIR|locus:2093736335 AT3G24130 [Arabidopsis thalian 0.904 0.928 0.485 5.4e-79
TAIR|locus:2065145336 AT2G47280 [Arabidopsis thalian 0.877 0.898 0.491 3.1e-76
TAIR|locus:2059030339 AT2G19150 [Arabidopsis thalian 0.875 0.887 0.462 7.7e-71
TAIR|locus:2148508293 AT5G26810 [Arabidopsis thalian 0.720 0.846 0.48 5.5e-61
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.860 0.727 0.400 3.5e-59
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.857 0.776 0.396 4e-58
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.854 0.767 0.410 1.7e-57
TAIR|locus:2086037344 AT3G17060 [Arabidopsis thalian 0.845 0.845 0.393 1.6e-56
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.877 0.768 0.395 4.8e-55
TAIR|locus:2179659 AT5G18990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 152/304 (50%), Positives = 204/304 (67%)

Query:    38 YTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASS 97
             + + V +SG GNFT IQ AI+ +P+NN  W  I +   +Y+EK+TIPQ KP I + GA  
Sbjct:    27 FEVIVDQSGHGNFTTIQKAIDSVPINNTHWFFINVKAGLYREKITIPQKKPFIVIVGAGK 86

Query:    98 RTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARI 157
             R+T+++W DH +   SPTF +L++N V K I F N+YN P + + N+       A+AA I
Sbjct:    87 RSTRVEWDDHASLAQSPTFATLADNTVVKKITFANSYNFPSNGKINKNPRV--PAVAAFI 144

Query:   158 SGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEY 217
              GDKSAFY+ GFAG+QDTL+D  GRHYFH+C I+GA+DFI G+GQSIY +C + V L   
Sbjct:   145 GGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVIQV-LGGQ 203

Query:   218 LPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVE 277
             L     GYITAQGR + +D +GFVF +C   G GKAYLGRA+  +SRVI  NS LTD+V+
Sbjct:   204 LGPGVTGYITAQGRTNANDANGFVFINCLVHGFGKAYLGRAWRPYSRVIFYNSNLTDVVD 263

Query:   278 PQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFIDHDGWI 337
             P GW  WN+  +E+ + YAE  C G+G++TS+R  W K LS   V+   D SFI+  GW+
Sbjct:   264 PLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKWVKKLSASAVQHLADLSFINRGGWV 323

Query:   338 AKLP 341
               LP
Sbjct:   324 EDLP 327
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2093736 AT3G24130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065145 AT2G47280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059030 AT2G19150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148508 AT5G26810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086037 AT3G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3E9D3PME55_ARATH3, ., 1, ., 1, ., 1, 10.50.8750.9121yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-132
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-114
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 6e-96
PLN02432293 PLN02432, PLN02432, putative pectinesterase 2e-91
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 8e-90
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 4e-89
PLN02671359 PLN02671, PLN02671, pectinesterase 6e-87
PLN02304379 PLN02304, PLN02304, probable pectinesterase 6e-79
PLN02634359 PLN02634, PLN02634, probable pectinesterase 7e-76
PLN02773317 PLN02773, PLN02773, pectinesterase 4e-72
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 4e-66
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 4e-51
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 4e-50
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 5e-50
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 2e-49
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 8e-48
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-47
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 7e-47
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 2e-46
PLN02314586 PLN02314, PLN02314, pectinesterase 4e-46
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 4e-46
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 2e-45
PLN02197588 PLN02197, PLN02197, pectinesterase 4e-45
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 8e-45
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 4e-44
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-43
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 3e-42
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 2e-41
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 2e-40
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-35
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-35
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 7e-33
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-30
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-18
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information 
 Score =  379 bits (974), Expect = e-132
 Identities = 160/312 (51%), Positives = 206/312 (66%), Gaps = 6/312 (1%)

Query: 31  ANPLKV-AYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPC 89
           A P  V    + V +SG GNFT IQ AI+ +P NN  W  I +   +Y+EKV IP +KP 
Sbjct: 24  AKPFGVYQQQVFVDQSGHGNFTTIQSAIDSVPSNNKHWFCINVKAGLYREKVKIPYDKPF 83

Query: 90  IFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEV 149
           I L GA  R T+I+W DHD+T  SPTF++L++N V K I F N+YN P    +N      
Sbjct: 84  IVLVGAGKRRTRIEWDDHDSTAQSPTFSTLADNTVVKSITFANSYNFPSKGNKNPR---- 139

Query: 150 KQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCA 209
             A+AA I GDKSAFY+CGFAG+QDTL+D  GRHYF +C I+GA+DFIFG+GQSIY +C 
Sbjct: 140 VPAVAAMIGGDKSAFYSCGFAGVQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQSIYESCV 199

Query: 210 VNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSGKAYLGRAYGAFSRVIIVN 269
           + V L   L     G+ITAQGR +  D +GFVF +C   G+G AYLGR +  +SRV+  N
Sbjct: 200 IQV-LGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGTGSAYLGRPWRGYSRVLFYN 258

Query: 270 SVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSS 329
           S LTD+V P+GW+AWN V HE  + +AE  C G+GA+TSKRVSW K LS   V+  T  S
Sbjct: 259 SNLTDVVVPEGWDAWNFVGHENQLTFAEHGCFGSGANTSKRVSWVKKLSGSAVQNLTSLS 318

Query: 330 FIDHDGWIAKLP 341
           FI+ +GW+   P
Sbjct: 319 FINREGWVEDQP 330

Length = 331
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.52
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.01
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.96
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.77
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.67
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.35
PLN02793443 Probable polygalacturonase 97.82
PLN02682369 pectinesterase family protein 97.78
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.44
PLN03010409 polygalacturonase 97.39
PRK10531422 acyl-CoA thioesterase; Provisional 97.3
PLN02634359 probable pectinesterase 97.2
PLN02665366 pectinesterase family protein 97.2
PLN03003456 Probable polygalacturonase At3g15720 97.13
KOG1777 625 consensus Putative Zn-finger protein [General func 97.03
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.02
PLN02773317 pectinesterase 96.99
PLN02155394 polygalacturonase 96.89
PLN02497331 probable pectinesterase 96.79
PLN02480343 Probable pectinesterase 96.75
PLN02218431 polygalacturonase ADPG 96.58
PLN02432293 putative pectinesterase 96.57
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.44
PLN02304379 probable pectinesterase 96.41
PLN02176340 putative pectinesterase 96.34
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.02
PLN02916502 pectinesterase family protein 95.96
PLN02671359 pectinesterase 95.89
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.89
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.84
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.81
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.78
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.66
smart00656190 Amb_all Amb_all domain. 95.66
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.53
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.49
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.48
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.34
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.32
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.32
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.26
PLN02197588 pectinesterase 94.87
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.69
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.62
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.57
PLN02314586 pectinesterase 94.4
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.27
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.26
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.25
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.05
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 93.95
PLN02301548 pectinesterase/pectinesterase inhibitor 93.85
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 93.72
PLN02188404 polygalacturonase/glycoside hydrolase family prote 93.4
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 93.27
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 93.15
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.54
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 92.45
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 92.14
smart00722146 CASH Domain present in carbohydrate binding protei 91.44
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 89.64
PLN02218431 polygalacturonase ADPG 88.81
PLN02155394 polygalacturonase 86.17
PLN02793443 Probable polygalacturonase 85.53
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 84.55
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 81.94
>PLN02497 probable pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=4.1e-99  Score=724.62  Aligned_cols=326  Identities=48%  Similarity=0.861  Sum_probs=292.2

Q ss_pred             HHHHHHHHHHhhhcccccccCCCccccEEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEcCeEEeeeeEEcCCCCeeE
Q 043974           12 TLLLLSSNVSTALDCKLNNANPLKVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIF   91 (344)
Q Consensus        12 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~i~V~~~g~g~f~TIq~Aidaap~~~~~~~~I~I~~G~Y~E~v~I~~~k~~It   91 (344)
                      +++.|+.|.|++|..-..........++++|+++|+|+|+|||+|||++|.++++|++|+|+||+|+|+|+||++||+|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Va~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~G~Y~EkV~Ip~~k~~it   85 (331)
T PLN02497          6 IIIGLIALCCFCLPHLIEAKPFGVYQQQVFVDQSGHGNFTTIQSAIDSVPSNNKHWFCINVKAGLYREKVKIPYDKPFIV   85 (331)
T ss_pred             ehHHHHHHHHhhcchhhhcCCccccceEEEECCCCCCCccCHHHHHhhccccCCceEEEEEeCcEEEEEEEecCCCCcEE
Confidence            45666777787776432111111224689999999999999999999999999899999999999999999999999999


Q ss_pred             EEecCCCceEEEeCCCCCCCCccEEEEecCceEEEeeEEEeccCCCCCcccccccccccceEEEEEecCceEEEeeeeec
Q 043974           92 LEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAG  171 (344)
Q Consensus        92 L~G~~~~~tiI~~~~~~~t~~satv~v~a~~~~~~nlti~N~~~~~~~~~~~~~~~~~~qAvAl~v~gd~~~f~nc~~~G  171 (344)
                      |+|++++.|+|+|++..++..++||.|.+++|+++||||+|+++.+..+...+    .+|||||++++||++|+||+|+|
T Consensus        86 l~G~g~~~tiIt~~~~~~t~~SaT~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~----~~QAVAl~v~gDr~~fy~C~f~G  161 (331)
T PLN02497         86 LVGAGKRRTRIEWDDHDSTAQSPTFSTLADNTVVKSITFANSYNFPSKGNKNP----RVPAVAAMIGGDKSAFYSCGFAG  161 (331)
T ss_pred             EEecCCCCceEEEeccccccCceEEEEecCCeEEEccEEEeCCCCccccCCCC----CcceEEEEecCCcEEEEeeEEec
Confidence            99999999999999988888999999999999999999999998543211111    27999999999999999999999


Q ss_pred             CcceeeccCcceeeeecEEeccceeEecccceeEEeeEEEEeccCCCCCCceeEEEecCCCCCCCCceEEEEceEEeecc
Q 043974          172 LQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSG  251 (344)
Q Consensus       172 ~QDTL~~~~gr~yf~~c~I~G~vDfIfG~g~a~f~~c~i~~~~~~~~~~~~~g~ItA~~r~~~~~~~Gfvf~~c~i~~~g  251 (344)
                      +|||||++.|||||++|||||+||||||+|+++||+|+|+++.+...+ +..|+||||+|+++.+++||||+||+|++++
T Consensus       162 ~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~a~Fe~C~I~s~~~~~~~-~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g  240 (331)
T PLN02497        162 VQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQSIYESCVIQVLGGQLEP-GLAGFITAQGRTNPYDANGFVFKNCLVYGTG  240 (331)
T ss_pred             cccceeeCCCcEEEEeCEEEecccEEccCceEEEEccEEEEecCcCCC-CCceEEEecCCCCCCCCceEEEEccEEccCC
Confidence            999999999999999999999999999999999999999998642111 2469999999988889999999999999999


Q ss_pred             eEeeccccccceeEEEEccccCCcccCCCCCCCCCCCCCCceEEEeeccccCCCCCCCccccccCCCHHHHhcccccccc
Q 043974          252 KAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFI  331 (344)
Q Consensus       252 ~~yLGRpW~~~a~vvf~~~~m~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~s~Rv~w~~~Lt~~ea~~~~~~~f~  331 (344)
                      ++||||||++|+||||++|+|++||.|+||.+|+....+++++|+||+|+|||+++++||+|+++|+++||++|+..+|+
T Consensus       241 ~~yLGRPW~~ysrvvf~~t~m~~~I~p~GW~~W~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~Lt~~eA~~f~~~~fi  320 (331)
T PLN02497        241 SAYLGRPWRGYSRVLFYNSNLTDVVVPEGWDAWNFVGHENQLTFAEHGCFGSGANTSKRVSWVKKLSGSAVQNLTSLSFI  320 (331)
T ss_pred             CEEEeCCCCCCceEEEEecccCCeEccCCcCCcCCCCCCCceEEEEEccccCCCCcCCCccccccCCHHHHHhhhHHhhc
Confidence            99999999999999999999999999999999998777889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q 043974          332 DHDGWIAKLPS  342 (344)
Q Consensus       332 ~~~~W~~~~p~  342 (344)
                      ++++|+|++|.
T Consensus       321 ~g~~Wl~~~~~  331 (331)
T PLN02497        321 NREGWVEDQPI  331 (331)
T ss_pred             CCCCCCCCCCC
Confidence            99999999883

>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 5e-35
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 6e-29
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 5e-19
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 6e-19
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 4e-18
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 4e-15
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 148/318 (46%), Gaps = 30/318 (9%)
Query: 36  VAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGA 95
           V   + V+  G G++  + +A+   P ++     I+I   +Y+E V +P+ K  I   G 
Sbjct: 5   VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGD 64
Query: 96  SSRTTKIQWG----DHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQ 151
              +T I       D  TT +S T  ++    +A+ I FQNT                 Q
Sbjct: 65  GRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAK-----------HQ 113
Query: 152 ALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVN 211
           A+A R+  D SAFY C     QD+L+    R +F  C+I G +DFIFGN   +  +C ++
Sbjct: 114 AVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIH 173
Query: 212 VTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSG---------KAYLGRAYGAF 262
              +    +K+   +TAQGR   +  +G V    +   +            YLGR +  +
Sbjct: 174 AR-RPGSGQKN--MVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEY 230
Query: 263 SRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKH---LSV 319
           SR +++ S +T+++ P GW  W+     + + Y E +  GAGA TS RV+W+      S 
Sbjct: 231 SRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSS 290
Query: 320 DEVKKFTDSSFIDHDGWI 337
            E + FT  SFI    W+
Sbjct: 291 TEAQGFTPGSFIAGGSWL 308
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-118
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-117
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-100
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 7e-98
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 9e-79
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  343 bits (881), Expect = e-118
 Identities = 92/318 (28%), Positives = 144/318 (45%), Gaps = 30/318 (9%)

Query: 36  VAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGA 95
           V   + V+  G G++  + +A+   P ++     I+I   +Y+E V +P+ K  I   G 
Sbjct: 5   VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGD 64

Query: 96  SSRTTKIQW----GDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQ 151
              +T I       D  TT +S T  ++    +A+ I FQNT                 Q
Sbjct: 65  GRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAG-----------AAKHQ 113

Query: 152 ALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVN 211
           A+A R+  D SAFY C     QD+L+    R +F  C+I G +DFIFGN   +  +C ++
Sbjct: 114 AVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIH 173

Query: 212 VTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLG---------SGKAYLGRAYGAF 262
                         +TAQGR   +  +G V    +            S   YLGR +  +
Sbjct: 174 ARRPG---SGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEY 230

Query: 263 SRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWE---KHLSV 319
           SR +++ S +T+++ P GW  W+     + + Y E +  GAGA TS RV+W+      S 
Sbjct: 231 SRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSS 290

Query: 320 DEVKKFTDSSFIDHDGWI 337
            E + FT  SFI    W+
Sbjct: 291 TEAQGFTPGSFIAGGSWL 308
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.74
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.64
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.03
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.36
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.03
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.97
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.79
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.76
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.7
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.69
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.64
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.6
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.6
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.59
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.5
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.47
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.45
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.43
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.41
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.3
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.18
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.16
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.95
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.77
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.75
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.56
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.45
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.41
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.4
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.76
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.74
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.73
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.66
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 95.65
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.56
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.5
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.1
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 93.93
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 93.46
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 92.84
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 92.49
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 92.17
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 91.7
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 91.19
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 90.03
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 89.97
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 85.75
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 84.96
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 83.42
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 80.32
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.6e-87  Score=645.54  Aligned_cols=288  Identities=27%  Similarity=0.532  Sum_probs=268.3

Q ss_pred             cEEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEcCeEEeeeeEEcCCCCeeEEEecCCCceEEEeCCC----CCCCCc
Q 043974           38 YTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDH----DTTISS  113 (344)
Q Consensus        38 ~~i~V~~~g~g~f~TIq~Aidaap~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~tiI~~~~~----~~t~~s  113 (344)
                      .+++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|+++||+|+|+|++++.|+|++++.    .+|..+
T Consensus         3 ~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~s   82 (317)
T 1xg2_A            3 ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRS   82 (317)
T ss_dssp             CSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGG
T ss_pred             ceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccce
Confidence            5799999999999999999999999999999999999999999999998999999999999999999874    345688


Q ss_pred             cEEEEecCceEEEeeEEEeccCCCCCcccccccccccceEEEEEecCceEEEeeeeecCcceeeccCcceeeeecEEecc
Q 043974          114 PTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGA  193 (344)
Q Consensus       114 atv~v~a~~~~~~nlti~N~~~~~~~~~~~~~~~~~~qAvAl~v~gd~~~f~nc~~~G~QDTL~~~~gr~yf~~c~I~G~  193 (344)
                      +||.|.+++|+++||||+|+++.       ..    +||+||++.+|++.|+||+|+|+|||||++.+||||++|+|+|+
T Consensus        83 atv~v~a~~f~~~~lt~~Nt~g~-------~~----~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~  151 (317)
T 1xg2_A           83 ATLAAVGQGFILQDICIQNTAGP-------AK----DQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGT  151 (317)
T ss_dssp             CSEEECSTTCEEESCEEEECCCG-------GG----CCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEES
T ss_pred             eEEEEECCCEEEEEeEEecccCC-------cc----CceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEec
Confidence            99999999999999999999873       12    79999999999999999999999999999999999999999999


Q ss_pred             ceeEecccceeEEeeEEEEeccCCCCCCceeEEEecCCCCCCCCceEEEEceEEeecc---------eEeecccccccee
Q 043974          194 IDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSG---------KAYLGRAYGAFSR  264 (344)
Q Consensus       194 vDfIfG~g~a~f~~c~i~~~~~~~~~~~~~g~ItA~~r~~~~~~~Gfvf~~c~i~~~g---------~~yLGRpW~~~a~  264 (344)
                      ||||||+++++||+|+|++++...   ...++||||+|.++.+++||||+||+|++++         ++||||||++|+|
T Consensus       152 vDFIfG~~~avf~~c~i~~~~~~~---~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr  228 (317)
T 1xg2_A          152 VDFIFGNAAVVFQKCQLVARKPGK---YQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSR  228 (317)
T ss_dssp             SSCEEECCEEEEESCEEEECCCST---TCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCE
T ss_pred             eeEEcCCceEEEeeeEEEEeccCC---CCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCce
Confidence            999999999999999999987521   1468999999988899999999999999864         7999999999999


Q ss_pred             EEEEccccCCcccCCCCCCCCCCCCCCceEEEeeccccCCCCCCCcccccc--CC-CHHHHhccccccccCCCCCCCC
Q 043974          265 VIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEK--HL-SVDEVKKFTDSSFIDHDGWIAK  339 (344)
Q Consensus       265 vvf~~~~m~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~s~Rv~w~~--~L-t~~ea~~~~~~~f~~~~~W~~~  339 (344)
                      |||++|+|+++|.|+||.+|++..++++++|+||+|+|||+++++||+|++  +| +++||++|+..+|++|++|+|.
T Consensus       229 ~v~~~t~~~~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~  306 (317)
T 1xg2_A          229 TVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRS  306 (317)
T ss_dssp             EEEESCEECTTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGG
T ss_pred             EEEEecccCCcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCC
Confidence            999999999999999999999877888999999999999999999999997  56 5799999999999998899995
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-101
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 5e-76
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  299 bits (768), Expect = e-101
 Identities = 91/319 (28%), Positives = 144/319 (45%), Gaps = 30/319 (9%)

Query: 35  KVAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEG 94
            V   + V+  G G++  + +A+   P ++     I+I   +Y+E V +P+ K  I   G
Sbjct: 4   TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLG 63

Query: 95  ASSRTTKIQW----GDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVK 150
               +T I       D  TT +S T  ++    +A+ I FQNT                 
Sbjct: 64  DGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAG-----------AAKH 112

Query: 151 QALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAV 210
           QA+A R+  D SAFY C     QD+L+    R +F  C+I G +DFIFGN   +  +C +
Sbjct: 113 QAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDI 172

Query: 211 NVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSG---------KAYLGRAYGA 261
           +              +TAQGR   +  +G V    +   +            YLGR +  
Sbjct: 173 HARRP---GSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKE 229

Query: 262 FSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKH---LS 318
           +SR +++ S +T+++ P GW  W+     + + Y E +  GAGA TS RV+W+      S
Sbjct: 230 YSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITS 289

Query: 319 VDEVKKFTDSSFIDHDGWI 337
             E + FT  SFI    W+
Sbjct: 290 STEAQGFTPGSFIAGGSWL 308
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.25
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 99.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.51
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.73
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.56
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.25
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.79
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 96.62
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.59
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.57
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.48
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.3
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.11
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.07
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.07
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.82
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.18
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 94.17
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 93.9
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 90.81
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 90.55
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 90.03
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 89.62
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 87.15
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 86.39
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 81.91
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.7e-92  Score=676.24  Aligned_cols=290  Identities=31%  Similarity=0.611  Sum_probs=271.1

Q ss_pred             cccEEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEcCeEEeeeeEEcCCCCeeEEEecCCCceEEEeCCC----CCCC
Q 043974           36 VAYTISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDH----DTTI  111 (344)
Q Consensus        36 ~~~~i~V~~~g~g~f~TIq~Aidaap~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~tiI~~~~~----~~t~  111 (344)
                      ++.+++|++||+|||+|||+|||++|.++++|++|+|+||+|+|+|+|+++||+|+|+|++++.|+|+++..    .+|.
T Consensus         5 ~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~   84 (319)
T d1gq8a_           5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF   84 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTG
T ss_pred             CCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccc
Confidence            345799999999999999999999999999999999999999999999999999999999999999999875    3467


Q ss_pred             CccEEEEecCceEEEeeEEEeccCCCCCcccccccccccceEEEEEecCceEEEeeeeecCcceeeccCcceeeeecEEe
Q 043974          112 SSPTFTSLSENVVAKGILFQNTYNVPPSYRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIE  191 (344)
Q Consensus       112 ~satv~v~a~~~~~~nlti~N~~~~~~~~~~~~~~~~~~qAvAl~v~gd~~~f~nc~~~G~QDTL~~~~gr~yf~~c~I~  191 (344)
                      .++||.|.+++|+++||||+|+++.       ..    +|||||++.+||+.|++|+|+|+|||||++.|||||++|+||
T Consensus        85 ~sat~~v~~~~f~a~nitf~Nt~g~-------~~----~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~Ie  153 (319)
T d1gq8a_          85 NSATVAAVGAGFLARDITFQNTAGA-------AK----HQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIA  153 (319)
T ss_dssp             GGCSEEECSTTCEEEEEEEEECCCG-------GG----CCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEE
T ss_pred             cccceeeecCCeEEEeeEEEeCCCC-------CC----CcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEE
Confidence            8899999999999999999999873       12    899999999999999999999999999999999999999999


Q ss_pred             ccceeEecccceeEEeeEEEEeccCCCCCCceeEEEecCCCCCCCCceEEEEceEEeecc---------eEeeccccccc
Q 043974          192 GAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSGFVFTSCQFLGSG---------KAYLGRAYGAF  262 (344)
Q Consensus       192 G~vDfIfG~g~a~f~~c~i~~~~~~~~~~~~~g~ItA~~r~~~~~~~Gfvf~~c~i~~~g---------~~yLGRpW~~~  262 (344)
                      |+||||||+++++||+|+|++++...   ...++||||+|.++.+++||||++|+|++++         ++||||||+++
T Consensus       154 G~vDFIfG~~~a~f~~c~i~~~~~~~---~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~  230 (319)
T d1gq8a_         154 GTVDFIFGNAAVVLQDCDIHARRPGS---GQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEY  230 (319)
T ss_dssp             ESSSCEEESCEEEEESCEEEECCCST---TCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTT
T ss_pred             eeccEEecCceeEeecceeeeecCCC---CCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCc
Confidence            99999999999999999999987532   2468999999988899999999999999753         57999999999


Q ss_pred             eeEEEEccccCCcccCCCCCCCCCCCCCCceEEEeeccccCCCCCCCccccc---cCCCHHHHhccccccccCCCCCCCC
Q 043974          263 SRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWE---KHLSVDEVKKFTDSSFIDHDGWIAK  339 (344)
Q Consensus       263 a~vvf~~~~m~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~s~Rv~w~---~~Lt~~ea~~~~~~~f~~~~~W~~~  339 (344)
                      +||||++|+|++||.|+||.+|+...++++++|+||+|+|||+++++||+|+   ++|+++||++|+..+|++|++|+|.
T Consensus       231 s~vvf~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~  310 (319)
T d1gq8a_         231 SRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA  310 (319)
T ss_dssp             CEEEEESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGG
T ss_pred             ceEEEEecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCccccc
Confidence            9999999999999999999999988888999999999999999999999997   4899999999999999999999996
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure