BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043977
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 184/626 (29%), Positives = 329/626 (52%), Gaps = 95/626 (15%)
Query: 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMF 71
WKVL++D+++++++S CKM DI G+++VED+ +RR+PLPS++AVY I PS+++V
Sbjct: 40 WKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSL 99
Query: 72 LSDMSGREP---LYKKAYVFFSTPIPKELVNH-IKSDTSVLPRIGALREMNLEYFPIDRQ 127
+SD ++P Y+ A+VFF+ P L N +KS + + I L E+N+ + P + Q
Sbjct: 100 ISDF--KDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKV--IKTLTEINIAFLPYESQ 155
Query: 128 AFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDAST 187
+ D + + + + + + L +A++IAT+ A++KE+P VRYR +A
Sbjct: 156 VYSLDSADSFQSFYSPHKAQMK--NPILERLAEQIATLCATLKEYPAVRYRGEYKDNAL- 212
Query: 188 TTFRDLIPSKLATAVWNCIEKYK----SIPNFPQTETCELLILDRSVDQIAPVIHEWTYD 243
LA + + ++ YK ++ P +LLILDR D +PV+HE T+
Sbjct: 213 ----------LAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQ 262
Query: 244 AMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMT 303
AM +DLL ++ + Y E + G+ KEVLL++ D +W+ LRH HIA+ S+ + +
Sbjct: 263 AMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLK 320
Query: 304 NFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGK-INHIIRE 362
+F S + G + + RDL ++++ +PQY +++ K S H+ +A + H +
Sbjct: 321 DFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHY--Q 371
Query: 363 IGLRDLGQLEQDLVFG-DAGAKDVINFLR------MKQDVTPENKLRLLMIYASVYPEKF 415
+ L ++EQDL G DA + + + +R + +V+ +K+R++++Y +
Sbjct: 372 GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFL-KNGI 430
Query: 416 EGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPG 475
+ +KL+Q A++ ED +I+ NM L + TD +L+ + + RKER
Sbjct: 431 TEENLNKLIQHAQIPPEDSEIITNMAHLGVPI-----VTDSTLR----RRSKPERKERIS 481
Query: 476 EEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTA 535
E+ T+ L ++ PII++++E+ + +L YP + S R A+ +TTA
Sbjct: 482 EQ-TYQLSRWTPIIKDIMEDTIEDKLDTKHYPYI--------------STRSSASFSTTA 526
Query: 536 PSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSE 595
S + GH W K N A + R G R+ +F++GG + +E
Sbjct: 527 VS-ARYGH---------WHK--------------NKAPGEYRS-GPRLIIFILGGVSLNE 561
Query: 596 LRACYKLT-TKLRREVVLGSTSFNDP 620
+R Y++T + EV++GST P
Sbjct: 562 MRCAYEVTQANGKWEVLIGSTHILTP 587
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 184/626 (29%), Positives = 329/626 (52%), Gaps = 95/626 (15%)
Query: 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMF 71
WKVL++D+++++++S CKM DI G+++VED+ +RR+PLPS++AVY I PS+++V
Sbjct: 28 WKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSL 87
Query: 72 LSDMSGREP---LYKKAYVFFSTPIPKELVNH-IKSDTSVLPRIGALREMNLEYFPIDRQ 127
+SD ++P Y+ A+VFF+ P L N +KS + + I L E+N+ + P + Q
Sbjct: 88 ISDF--KDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKV--IKTLTEINIAFLPYESQ 143
Query: 128 AFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDAST 187
+ D + + + + + + L +A++IAT+ A++KE+P VRYR +A
Sbjct: 144 VYSLDSADSFQSFYSPHKAQMK--NPILERLAEQIATLCATLKEYPAVRYRGEYKDNAL- 200
Query: 188 TTFRDLIPSKLATAVWNCIEKYK----SIPNFPQTETCELLILDRSVDQIAPVIHEWTYD 243
LA + + ++ YK ++ P +LLILDR D +PV+HE T+
Sbjct: 201 ----------LAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQ 250
Query: 244 AMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMT 303
AM +DLL ++ + Y E + G+ KEVLL++ D +W+ LRH HIA+ S+ + +
Sbjct: 251 AMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLK 308
Query: 304 NFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGK-INHIIRE 362
+F S + G + + RDL ++++ +PQY +++ K S H+ +A + H +
Sbjct: 309 DFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHY--Q 359
Query: 363 IGLRDLGQLEQDLVFG-DAGAKDVINFLR------MKQDVTPENKLRLLMIYASVYPEKF 415
+ L ++EQDL G DA + + + +R + +V+ +K+R++++Y +
Sbjct: 360 GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFL-KNGI 418
Query: 416 EGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPG 475
+ +KL+Q A++ ED +I+ NM L + TD +L+ + + RKER
Sbjct: 419 TEENLNKLIQHAQIPPEDSEIITNMAHLGVPI-----VTDSTLR----RRSKPERKERIS 469
Query: 476 EEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTA 535
E+ T+ L ++ PII++++E+ + +L YP + S R A+ +TTA
Sbjct: 470 EQ-TYQLSRWTPIIKDIMEDTIEDKLDTKHYPYI--------------STRSSASFSTTA 514
Query: 536 PSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSE 595
S + GH W K N A + R G R+ +F++GG + +E
Sbjct: 515 VS-ARYGH---------WHK--------------NKAPGEYRS-GPRLIIFILGGVSLNE 549
Query: 596 LRACYKLT-TKLRREVVLGSTSFNDP 620
+R Y++T + EV++GST P
Sbjct: 550 MRCAYEVTQANGKWEVLIGSTHILTP 575
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 182/628 (28%), Positives = 321/628 (51%), Gaps = 93/628 (14%)
Query: 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMF 71
WKVLI+D+++++++S CKM +I G++LVED+ RRR+PLP ++AVY I P++E+V
Sbjct: 25 WKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCL 84
Query: 72 LSDMSGRE-PLYKKAYVFFSTPIPKELVNHI-KSDTSVLPRIGALREMNLEYFPIDRQAF 129
++D + P Y+ A++FF+ P+EL + KS T+ I L+E+N+ + P + Q F
Sbjct: 85 MADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARF--IKTLKEINIAFLPYESQIF 142
Query: 130 ITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTT 189
D + + N + A++IAT+ A++ E+P VRYR+ +AS
Sbjct: 143 SLDSPDTFQVYY--NPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENAS--- 197
Query: 190 FRDLIPSKLATAVWNCIEKYK----SIPNFPQTETCELLILDRSVDQIAPVIHEWTYDAM 245
F L+ KL + Y+ ++ PQ + +LLILDR D I+P++HE T+ AM
Sbjct: 198 FAQLVQQKL--------DAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAM 249
Query: 246 CHDLLDMDGN--KYVLEVPSKTGGQ--PEKKEVLLEDHDPVWLELRHAHIADASERLHDK 301
+DLL ++ + KYV TGG PE KEVLL++ D +W+E+RH HIA S+ + K
Sbjct: 250 AYDLLPIENDVYKYV-----NTGGNEVPE-KEVLLDEKDDLWVEMRHQHIAVVSQNVTKK 303
Query: 302 MTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIR 361
+ F + + + +DL ++++ +PQY +++ K S H+ +A +
Sbjct: 304 LKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQ 357
Query: 362 EIGLRDLGQLEQDLVFG-DAGAKDVINFLR------MKQDVTPENKLRLLMIYASVYPEK 414
+ + L ++EQDL G DA + + + +R + Q ++ +K+R++++Y ++
Sbjct: 358 Q-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYI-IHKGG 415
Query: 415 FEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERP 474
+ +KL+Q A + +E+ I+N+M+ L + D + Q RKER
Sbjct: 416 ISEENLAKLVQHAHIPAEEKWIINDMQNLGVPI-----IQDGGRRKIPQPYHTHNRKERQ 470
Query: 475 GEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATT 534
+ T+ + ++ P +++++E + +L YP +N P+
Sbjct: 471 A-DHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGG---------------PRPSCQ 514
Query: 535 APSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRS 594
P + GH W K D G +S K G R+ +F++GG + S
Sbjct: 515 QPVSVRYGH---------WHK----DKGQAS-----------YKSGPRLIIFVVGGISYS 550
Query: 595 ELRACYKLTTKLRR--EVVLGSTSFNDP 620
E+R+ Y++T + EV+LGST P
Sbjct: 551 EMRSAYEVTQTAKNNWEVILGSTHILTP 578
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 163/634 (25%), Positives = 320/634 (50%), Gaps = 60/634 (9%)
Query: 7 ADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKE 66
AD WKVL++DK ++++S +M++I D GV++VED+ ++R+ LP VYFI+P++E
Sbjct: 20 ADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTEE 79
Query: 67 NVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDR 126
N+ + D + R P Y+ A++FF +P+P L+ + S +V + L+E+N + P +
Sbjct: 80 NLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAV-KYVKTLKEINTLFIPKEH 138
Query: 127 QAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPK--ASD 184
+ F + L + +G +R ++ + +R++T+ +M P+VRY + ++
Sbjct: 139 RVFTLNEPHGLVQYYG-----SRSSSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTE 193
Query: 185 ASTTTFRDLIPSKLATAVWNCIE-KYKSIPNFPQTETCELLILDRSVDQIAPVIHEWTYD 243
+ I ++ + N E K KS + LILDR+VD +P++HE TY
Sbjct: 194 RMAMQLQKEIDMSVSQGLINAREGKLKS----------QFLILDRAVDLKSPLVHELTYQ 243
Query: 244 AMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMT 303
A +DLL+++ + Y GG+ ++++V+L + D +WL++RH HI++ ++
Sbjct: 244 AAAYDLLNIENDIYSYST-VDAGGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFD 302
Query: 304 NFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREI 363
F + Q + S+ GE L+++++ LPQ+ EQ+ K SLH++++ IN
Sbjct: 303 EFCVSARRLQGLRDSQQ-GEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSST 361
Query: 364 GLRDLGQLEQDLVF-GDAGAKDVINFLR------MKQDVTPENKLRLLMIYASVYPEKFE 416
+ + EQ++V + V +F+ + + V+ E+KLR LM+ +
Sbjct: 362 -IDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLML-CVLAKNGTS 419
Query: 417 GDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGE 476
+ + L+ A +++ + N+ +L ++ + + G+K K R ER
Sbjct: 420 SHELNNLLDNANIATPSRSAIYNLEMLGATVVADRR---------GRKPKTMKRIER--- 467
Query: 477 EETWALFKFYPIIEELIENLCKGELPKSDYPCM-NHPSSAEQESTSRFSVRKKAAPATTA 535
+ + L ++ PI+++L+E + G+L YP + + PS + + S+ PAT+A
Sbjct: 468 DMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSA 527
Query: 536 PSEKKTGHSVRSRRTPSWAKPQNSDDGY-SSDSIL----NHAVADLRKMGQRIFVFMIGG 590
R+ +WAK + ++ S+ S + N A ++FVF+ G
Sbjct: 528 ------------RKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGT 575
Query: 591 ATRSELRACYKLTTKLRREVVLGSTSFNDPPEYI 624
+ +E+R Y+++ EV +G+ + P E++
Sbjct: 576 VSYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFV 609
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 179/628 (28%), Positives = 306/628 (48%), Gaps = 93/628 (14%)
Query: 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMF 71
WKVLI+D+++ + +S CK +I G++LVED+ RRR+PLP ++AVY I P++E+V
Sbjct: 25 WKVLIVDQLSXRXVSACCKXHEIXSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCL 84
Query: 72 LSDMSGRE-PLYKKAYVFFSTPIPKELVNHI-KSDTSVLPRIGALREMNLEYFPIDRQAF 129
+D + P Y+ A++FF+ P+EL + KS T+ I L+E+N+ + P + Q F
Sbjct: 85 XADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARF--IKTLKEINIAFLPYESQIF 142
Query: 130 ITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTT 189
D + + N + A++IAT+ A++ E+P VRYR+ +AS
Sbjct: 143 SLDSPDTFQVYY--NPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENAS--- 197
Query: 190 FRDLIPSKLATAVWNCIEKYK----SIPNFPQTETCELLILDRSVDQIAPVIHEWTYDAM 245
F L+ KL + Y+ + PQ + +LLILDR D I+P++HE T+ A
Sbjct: 198 FAQLVQQKL--------DAYRADDPTXGEGPQKDRSQLLILDRGFDPISPLLHELTFQAX 249
Query: 246 CHDLLDMDGN--KYVLEVPSKTGGQ--PEKKEVLLEDHDPVWLELRHAHIADASERLHDK 301
+DLL ++ + KYV TGG PE KEVLL++ D +W+E RH HIA S+ + K
Sbjct: 250 AYDLLPIENDVYKYV-----NTGGNEVPE-KEVLLDEKDDLWVEXRHQHIAVVSQNVTKK 303
Query: 302 MTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIR 361
+ F + + + +DL + ++ PQY +++ K S H+ +A +
Sbjct: 304 LKQFADEKRXGTAADKA------GIKDLSQXLKKXPQYQKELSKYSTHLHLAEDCXKQYQ 357
Query: 362 EIGLRDLGQLEQDLVFG-DAGAKDVINFLR------MKQDVTPENKLRLLMIYASVYPEK 414
+ + L ++EQDL G DA + + + R + Q ++ +K+R++++Y ++
Sbjct: 358 Q-HVDKLCKVEQDLAXGTDADGEKIRDHXRNIVPILLDQKISAYDKIRIILLYI-IHKGG 415
Query: 415 FEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERP 474
+ +KL+Q A + +E+ I+N+ + L + D + Q RKER
Sbjct: 416 ISEENLAKLVQHAHIPAEEKWIINDXQNLGVPI-----IQDGGRRKIPQPYHTHNRKERQ 470
Query: 475 GEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATT 534
+ T+ ++ P +++ E + +L YP +N P+
Sbjct: 471 A-DHTYQXSRWTPYXKDIXEAAVEDKLDTRHYPFLNGGG---------------PRPSCQ 514
Query: 535 APSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRS 594
P + GH W K D G +S K G R+ +F++GG + S
Sbjct: 515 QPVSVRYGH---------WHK----DKGQAS-----------YKSGPRLIIFVVGGISYS 550
Query: 595 ELRACYKLTTKLRR--EVVLGSTSFNDP 620
E R+ Y++T + EV+LGST P
Sbjct: 551 EXRSAYEVTQTAKNNWEVILGSTHILTP 578
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 162/623 (26%), Positives = 298/623 (47%), Gaps = 98/623 (15%)
Query: 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMF 71
WK++++D+ T K++S CKM D+ + G++++E++++ R+P+ M A+YFI P+ ++V F
Sbjct: 32 WKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCF 91
Query: 72 LSDMSGR-EPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFI 130
L D + E YK AY++F+ P L N IK+ S I +E+N+ + P + Q +
Sbjct: 92 LRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKASCS--KSIRRCKEINISFIPQESQVYT 149
Query: 131 TDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTTF 190
D A + + N + + + MA++I TV A++ E P VRY++ +A
Sbjct: 150 LDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNA----- 204
Query: 191 RDLIPSKLATAVWNCIEKYKSIPN---FPQTETCELLILDRSVDQIAPVIHEWTYDAMCH 247
SKLA V +E Y I +LLI+DR D ++ V+HE T+ AM +
Sbjct: 205 -----SKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFDPVSTVLHELTFQAMAY 259
Query: 248 DLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVS 307
DLL ++ + Y KT G+ +KE +LE+ D +W+ +RH HIA E + M S
Sbjct: 260 DLLPIENDTY----KYKTDGK--EKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMKEISS 313
Query: 308 KNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRD 367
KA + G+ S L ++++ +P + +Q+ K +H+ +A + + + +
Sbjct: 314 TKKATE--------GKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFK-LNIEK 364
Query: 368 LGQLEQDLVFG-DAGAKDVINFL------RMKQDVTPENKLRLLMIYASVYPEKFEGDKA 420
L + EQDL G DA + V + + + ++ +K+R +++Y
Sbjct: 365 LCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLY------------- 411
Query: 421 SKLMQLARLSSEDM-KIVNNMRLLAGS-LNSKKSSTDFSLKFDGQKTKQAARKERPGEEE 478
+ + + E++ ++++N+++ S + S + Q+ K RK+R EE
Sbjct: 412 --IFGINGTTEENLDRLIHNVKIEDDSDMIRNWSHLGVPIVPPSQQAK-PLRKDRSA-EE 467
Query: 479 TWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSE 538
T+ L ++ P I++++E+ L ++P + P+
Sbjct: 468 TFQLSRWTPFIKDIMEDAIDNRLDSKEWP-----------------------YCSRCPAV 504
Query: 539 KKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRA 598
+V +R+ P N+ D RK G R+ +F+IGG T SE+R
Sbjct: 505 WNGSGAVSARQKPR----------------TNYLELD-RKNGSRLIIFVIGGITYSEMRC 547
Query: 599 CYKLTTKLRR-EVVLGSTSFNDP 620
Y+++ + EV++GST P
Sbjct: 548 AYEVSQAHKSCEVIIGSTHILTP 570
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/389 (22%), Positives = 168/389 (43%), Gaps = 42/389 (10%)
Query: 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMF 71
WKVLI+D + +S ++ D+ G+++ + + R PLP + A+YF+ P+KEN+ +
Sbjct: 58 WKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDII 117
Query: 72 LSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLP---RIGALREMNLEYFPIDRQA 128
++D+ + Y + Y+ F++ +P+ L+ + S+ +I + + L++ + +
Sbjct: 118 VNDLKSDK--YSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPEL 175
Query: 129 FITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTT 188
F + A L C N TV ++ P++ RA K A
Sbjct: 176 FSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVL-TINSIPII--RAAKGGPA--- 229
Query: 189 TFRDLIPSKLATAVWNCI--EKYKSIPNFPQTETCE---LLILDRSVDQIAPVIHEWTYD 243
++I KL T + + + S ++ E L+ILDR++D + H W Y
Sbjct: 230 ---EIIAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASXFSHSWIYQ 286
Query: 244 AMCHDLLDMDGNKYVLEVPSKTGGQPE-------KKEVLLEDHDPVWLELRHAHIADASE 296
D+ + N + + SK G K+ +E +D W E H +A+E
Sbjct: 287 CXVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWXENSHLPFPEAAE 346
Query: 297 RLHDKMTNFVSKNKAAQIQQSSRDGGELSTRDL-----------QKIVQALPQYSEQVDK 345
+ + + K +AA+I +R G + DL Q++V+ LP+ + + +
Sbjct: 347 NVEAALNTY--KEEAAEI---TRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNT 401
Query: 346 LSLHVEIAGKINHIIREIGLRDLGQLEQD 374
+ H I + + L ++EQD
Sbjct: 402 IDTHXNIFAALLSQLESKSLDTFFEVEQD 430
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain
Length = 159
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMF 71
WKVLI D+ ++S + ++ D G++L L R P+ + AVYF+ P++EN+
Sbjct: 50 WKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAVYFVMPTEENIDRL 109
Query: 72 LSDMSGREPLYKKAYVFFSTPIPK 95
D+ R LY+ Y+ F + I +
Sbjct: 110 CQDL--RNQLYESYYLNFISAISR 131
>pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|B Chain B, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|C Chain C, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad Bound
Length = 499
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 293 DASER--LHDKMTNFVSKNKAAQIQQSSRDGGELSTR----DLQKIVQALPQYSEQVDKL 346
DASER L DK+ + V +++A S +GG+ + DLQ +++ L Y+ DK+
Sbjct: 79 DASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKI 138
>pdb|3S46|A Chain A, The Crystal Structure Of Alanine Racemase From
Streptococcus Pneumoniae
pdb|3S46|B Chain B, The Crystal Structure Of Alanine Racemase From
Streptococcus Pneumoniae
Length = 367
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 97 LVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLN 156
L H+ D+ + RIG +E Q + H +E +F + D N
Sbjct: 124 LTVHLXIDSG-MGRIGFREASEVE----QAQDLLQQHGVCVEGIFTHFATADEESDDYFN 178
Query: 157 TMAKRIATVFASMKEFPMVRYRAPKASDASTTTFR 191
+R T+ ASMKE P + + AS+++TT +
Sbjct: 179 AQLERFKTILASMKEVPELVH----ASNSATTLWH 209
>pdb|2ID6|A Chain A, Crystal Structure Of Transcriptional Regulator (Tm1030) At
1.75a Resolution
pdb|3IH2|A Chain A, Tm1030 Crystallized At 323k
pdb|3IH3|A Chain A, Tm1030 Crystallized At 310k
pdb|3IH4|A Chain A, Tm1030 Crystallized At 277k
pdb|4I6Z|A Chain A, Crystal Structure Of The Transcriptional Regulator Tm1030
With 24bp Dna Oligonucleotide
pdb|4I6Z|B Chain B, Crystal Structure Of The Transcriptional Regulator Tm1030
With 24bp Dna Oligonucleotide
pdb|4I76|A Chain A, Crystal Structure Of Transcriptional Regulator Tm1030 With
Octanol
pdb|4I76|B Chain B, Crystal Structure Of Transcriptional Regulator Tm1030 With
Octanol
Length = 202
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 285 ELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVD 344
EL + +E+L + NF+ KN+ +RD + R ++K ++ + E+ D
Sbjct: 51 ELYYQAYXSVTEKLQKEFENFLXKNR-------NRDIFDFXERWIEKKLEYSASHPEEAD 103
Query: 345 KLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLL 404
L V ++ +R+ L DL + ++ VF D ++ + L + +DVT E L+ L
Sbjct: 104 FLITLVS----VDEGLRKRILLDLEKSQR--VFFDF-VREKLKDLDLAEDVTEEIALKFL 156
Query: 405 MIYASVYPEKF 415
+ S + E +
Sbjct: 157 XWFFSGFEEVY 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,752,525
Number of Sequences: 62578
Number of extensions: 715730
Number of successful extensions: 1650
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1603
Number of HSP's gapped (non-prelim): 23
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)