Query 043977
Match_columns 625
No_of_seqs 167 out of 983
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 7E-101 1E-105 804.9 47.9 551 8-625 19-579 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 1.3E-89 2.7E-94 774.8 42.5 537 12-625 1-562 (564)
3 KOG1299 Vacuolar sorting prote 100.0 7.6E-83 1.7E-87 645.9 39.9 514 8-625 18-543 (549)
4 KOG1302 Vacuolar sorting prote 100.0 3.5E-82 7.6E-87 666.3 39.8 530 10-625 33-597 (600)
5 COG5158 SEC1 Proteins involved 100.0 5.5E-81 1.2E-85 669.2 44.9 531 12-625 25-572 (582)
6 KOG1301 Vesicle trafficking pr 100.0 4.6E-78 1E-82 618.3 36.8 533 12-625 41-609 (621)
7 PF14071 YlbD_coat: Putative c 39.3 34 0.00074 30.3 3.3 14 274-287 32-45 (124)
8 PRK05581 ribulose-phosphate 3- 37.7 41 0.00089 32.8 4.1 36 583-622 171-206 (220)
9 PLN02334 ribulose-phosphate 3- 28.9 56 0.0012 32.3 3.4 36 583-622 175-210 (229)
10 PRK08883 ribulose-phosphate 3- 27.7 69 0.0015 31.6 3.8 37 582-622 167-203 (220)
11 cd00564 TMP_TenI Thiamine mono 24.6 80 0.0017 29.7 3.6 36 583-622 151-186 (196)
12 PRK00043 thiE thiamine-phospha 23.9 77 0.0017 30.5 3.4 36 583-622 161-196 (212)
13 TIGR00693 thiE thiamine-phosph 23.8 79 0.0017 30.1 3.4 36 583-622 153-188 (196)
14 COG2074 2-phosphoglycerate kin 22.4 71 0.0015 32.2 2.6 37 581-617 87-124 (299)
15 PF12327 FtsZ_C: FtsZ family, 21.0 1.8E+02 0.0038 24.4 4.5 37 579-615 35-76 (95)
16 TIGR01163 rpe ribulose-phospha 20.3 1.1E+02 0.0024 29.3 3.7 36 583-622 166-201 (210)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-101 Score=804.89 Aligned_cols=551 Identities=42% Similarity=0.729 Sum_probs=474.2
Q ss_pred CCCC-cEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcCCCCCcceEE
Q 043977 8 DSKS-WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAY 86 (625)
Q Consensus 8 ~~~~-~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~~~~~y~~~~ 86 (625)
..+| |||||+|+.+++++|+||+|++++++|||+++.|++.|+|+|.++|||||+|+.+++++++.||....|.|+.+|
T Consensus 19 ~k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~~~V~~~i~Df~~~~~~Y~~ah 98 (593)
T KOG1300|consen 19 EKKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTEESVDCLIKDFEGRSPLYKAAH 98 (593)
T ss_pred CCCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCchhhHHHHHHhhcccCcccceEE
Confidence 4456 999999999999999999999999999999999999999999999999999999999999999976668999999
Q ss_pred EEecCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHHHHHHHHH
Q 043977 87 VFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVF 166 (625)
Q Consensus 87 i~f~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~ 166 (625)
|||+.+||+.++..+... .+...|+++.|++++|+|+|+++|+++.|++|..+|.+. +.......++.+|++|++||
T Consensus 99 ifF~~~c~~~lf~~l~ks-~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~--~a~~~~~~l~~~a~~I~tvC 175 (593)
T KOG1300|consen 99 IFFLDPCPDPLFNKLSKS-RAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD--NAAIIDANLEKIADQIATVC 175 (593)
T ss_pred EEEcCCCCHHHHHHHHhh-hHhhhhhhheecccccceecceeeeecChhhHHHhcCch--hhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999743 467889999999999999999999999999999999954 44556789999999999999
Q ss_pred HHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhcc-CCCCCCCCCeeEEEecCCCCccccccchhchhHH
Q 043977 167 ASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKS-IPNFPQTETCELLILDRSVDQIAPVIHEWTYDAM 245 (625)
Q Consensus 167 ~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~-~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYqaL 245 (625)
.++|++|.|||++.....+ ..+|+++|.++++.++.|+. -+++|+.+++.|||+||++|+++||||+||||||
T Consensus 176 atL~e~P~vRy~~~~~~~a------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~iaPlLHE~TyqAM 249 (593)
T KOG1300|consen 176 ATLGEYPNVRYRGDFARNA------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDPVAPLLHEFTYQAM 249 (593)
T ss_pred HHhCcCcceeeccccccCH------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEEEEeccccccchHHHHHHHHHH
Confidence 9999999999998865544 26899999999999999986 4466777799999999999999999999999999
Q ss_pred hhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCCCCC
Q 043977 246 CHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGGELS 325 (625)
Q Consensus 246 i~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s 325 (625)
+||+++|+++.|.|+.+.+.|++ +|+++|+++|++|.++||+||++|.+.|++.+++|..+++....+ ++..|
T Consensus 250 ~~DLl~iend~Y~ye~~g~~g~~--kk~vllde~D~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~~~-----~k~~S 322 (593)
T KOG1300|consen 250 AYDLLPIENDVYRYETPGKSGEK--KKEVLLDEDDDLWVELRHKHIADVSERLTKKMKNFSSKNKRLQTK-----SKETS 322 (593)
T ss_pred HHHHHhhcCCEEEEecCCCCCCc--cceeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----ccccc
Confidence 99999999999999886555533 789999999999999999999999999999999999887654432 34579
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCC-hHH-------HHHHHhcCCCCCc
Q 043977 326 TRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAG-AKD-------VINFLRMKQDVTP 397 (625)
Q Consensus 326 ~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~-~~~-------~~~~l~~~~~~~~ 397 (625)
+.|+.++|++||+|+++..+++.|++||++|++.+++ ++.+++.+||++++|.+. .+. +++.+. ...++.
T Consensus 323 ~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~-~~~~~~ 400 (593)
T KOG1300|consen 323 TKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPILL-ESNVRL 400 (593)
T ss_pred hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHHhhhhhhc-ccCchH
Confidence 9999999999999999999999999999999999988 999999999999999542 222 333443 467899
Q ss_pred hhHHHHHHHHHHhCCCCCChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCCCcccccccccccchhcccCCCCCc
Q 043977 398 ENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGEE 477 (625)
Q Consensus 398 ~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~ 477 (625)
.||+|++++|.+.. +|+...+..+|+++.|++.++..++.|+..+|....++ .+..+| ..+.++++. .+
T Consensus 401 ~dklR~Illy~~~~-~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~~----~~~~k~-----~~~~rker~-~e 469 (593)
T KOG1300|consen 401 LDKLRLILLYIFER-KGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTKD----SFLLKF-----DPPERKERV-EE 469 (593)
T ss_pred HHHHHHHHHHHHhc-CCccHHHHHHHhcccCCCchHHHHHhhHHHhCCccccC----cccccC-----CCCcccccc-cc
Confidence 99999999999984 79999999999999999999999999999998755433 222222 222256664 78
Q ss_pred cccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCcccCCCCCCCCCC
Q 043977 478 ETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAKPQ 557 (625)
Q Consensus 478 ~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 557 (625)
..|.+|||+|.++.|+|++++++|+.+.|||+++++....|. ...++|+++|.+..
T Consensus 470 ~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~------------------------~~~Sar~~~~~~~k 525 (593)
T KOG1300|consen 470 QTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS------------------------AATSARYGHPLSNK 525 (593)
T ss_pred ceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccC------------------------ccccccccCccccc
Confidence 899999999999999999999999999999998776322111 12223334555433
Q ss_pred CCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCccccC
Q 043977 558 NSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~fl~ 625 (625)
... ...+.++|+||||+||+||+|+|++|++++.++++|+||||+|++|.+||+
T Consensus 526 ~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~~iltP~~fL~ 579 (593)
T KOG1300|consen 526 TPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSDHILTPTKFLD 579 (593)
T ss_pred Ccc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCcccCCHHHHHH
Confidence 221 123579999999999999999999999999999999999999999999973
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=1.3e-89 Score=774.76 Aligned_cols=537 Identities=32% Similarity=0.597 Sum_probs=406.5
Q ss_pred cEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcCCCCCcceEEEEecC
Q 043977 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFST 91 (625)
Q Consensus 12 ~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~~~~~y~~~~i~f~~ 91 (625)
|||||+|+.++++||++|++++|+++||++++.|+..|+|+|+.+|||||+|+.+++++|++|+.. +.|++|||+|++
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i~p~~~~i~~i~~~~~~--~~~~~~~i~f~~ 78 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFIRPTPENIKRIIKDLKN--PPYRSYHIFFTP 78 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE-S-HHHHHHHHHHCHS--TSBSEEEEEESS
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEEcCcHHHHHHHHHHHHh--cccccEEEEEeh
Confidence 999999999999999999999999999999999999999999999999999999999999999975 799999999999
Q ss_pred CCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhC-CCCCCchhhhHHHHHHHHHHHHHHHHcC
Q 043977 92 PIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFG-DNVQNTRQFDTCLNTMAKRIATVFASMK 170 (625)
Q Consensus 92 ~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~-~~~~~~~~~~~~l~~ia~~L~sl~~~lg 170 (625)
.+++..++.|+++ ++.++|.++.|+++||+|+|+|+|+|++|.+|..+|. .++ .+.++.+|++|+++|.++|
T Consensus 79 ~~~~~~~~~l~~~-~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~------~~~l~~~a~~L~~l~~~~g 151 (564)
T PF00995_consen 79 RVSESLLEILAES-GVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGD------ESSLQRIADSLLSLQLTLG 151 (564)
T ss_dssp ---HHHHHHHHHS-CGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGH------HHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHhhhhc-CccceecccccceeEEEEccchhhhhcccchHHHHhccccc------hhHHHHHHHHHHHHHHHhC
Confidence 9999998999876 5889998899999999999999999999999999998 443 5889999999999999999
Q ss_pred CCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHh----cc-CCCCC---CCCCeeEEEecCCCCccccccchhch
Q 043977 171 EFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKY----KS-IPNFP---QTETCELLILDRSVDQIAPVIHEWTY 242 (625)
Q Consensus 171 ~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~----~~-~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TY 242 (625)
.+|.|||+|+. .|+.+|..+.+.+.+. .. .+.++ ..++++|||+||++|++|||||||||
T Consensus 152 ~~p~I~~~g~~------------~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TY 219 (564)
T PF00995_consen 152 EIPNIRYKGNS------------NAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTY 219 (564)
T ss_dssp ---EEEE-TTC------------HHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BH
T ss_pred CCCeEEEeCch------------hHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCcee
Confidence 99999999981 3556666666666552 22 22222 23468999999999999999999999
Q ss_pred hHHhhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCC
Q 043977 243 DAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGG 322 (625)
Q Consensus 243 qaLi~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 322 (625)
|||+||+|||++|.|+++.+...+ ..++++.|+++|++|+++||+||++|++.|.+++++++.++ .. ..++
T Consensus 220 e~li~d~~~i~~~~v~~~~~~~~~--~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~------~~~~ 290 (564)
T PF00995_consen 220 EGLIDDLFGINNNKVEIPDEINSG--ENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-EK------SRSK 290 (564)
T ss_dssp HHHHHHHSTEBTTEEEEEECSSSS--ECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H----------S
T ss_pred eeEHHhhhhhcCCEeccccCCCcc--ccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-cc------ccch
Confidence 999999999999999998743332 22478999999999999999999999999999999998653 10 1245
Q ss_pred CCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCCh----HHHHHHHhcCCCCCch
Q 043977 323 ELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGA----KDVINFLRMKQDVTPE 398 (625)
Q Consensus 323 ~~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~~----~~~~~~l~~~~~~~~~ 398 (625)
..++++|++||++||+++++++.+++|++|+++|++.+++++|.+++++||+|++|.+.. ..+.++|. +...+.+
T Consensus 291 ~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~-~~~~~~~ 369 (564)
T PF00995_consen 291 SKSIQEMKEFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELIN-SRKISIE 369 (564)
T ss_dssp TTTHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHH-STTSTHH
T ss_pred hhHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhh-ccCCCHH
Confidence 779999999999999999999999999999999999999999999999999999987543 24788885 3689999
Q ss_pred hHHHHHHHHHHhCCCCCCh---HHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCCCcccccccccccchhc---c--
Q 043977 399 NKLRLLMIYASVYPEKFEG---DKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAA---R-- 470 (625)
Q Consensus 399 dklRLl~L~~l~~~~gl~~---~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~f~~~k~~~~~---~-- 470 (625)
++|||+|||+++. |++. +.+++++.+.|++.+++.++.+|+++|+...+.+. ..|... .+.+++. .
T Consensus 370 d~LRLl~L~sl~~--g~~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~-~~~~~~---~~~~~l~~~~~~~ 443 (564)
T PF00995_consen 370 DKLRLLCLYSLTN--GIKGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNS-SNFQSI---RKKLNLISKFNDK 443 (564)
T ss_dssp HHHHHHHHHHHHH---HTCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTT-S--CTT---C-TT---HHTTCC
T ss_pred HHHHHHHHHHHHh--cCCcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCc-cchhhh---ccccccccccccc
Confidence 9999999999993 4443 34455666565655999999999999998765310 012211 1222222 1
Q ss_pred -cCCCCCccccccccccHHHHHHHHHHHcCCCC-CCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCcccC
Q 043977 471 -KERPGEEETWALFKFYPIIEELIENLCKGELP-KSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSR 548 (625)
Q Consensus 471 -~~~~~~~~~y~~s~y~Pl~~~lie~~~~~~l~-~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 548 (625)
....+.+.+|+|+||+|+++|+|+.+++++++ .+.||++........+. ..++++.
T Consensus 444 ~~~~~~~~~~~~~~~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 501 (564)
T PF00995_consen 444 NDKNNPKDISYVYSGYAPLIVRLVEDLIKGKLDKEEEFPYLDPKPKNLNGS----------------------SFSLRSS 501 (564)
T ss_dssp CSSSSCSCCCSTTCT---HHHHHHHHHHTTHSHHTTTSEBSSTCC-----S----------------------SSSSS--
T ss_pred ccccccccccchhcccccHHHHHHHHHhhccCCcccccccccccccccCCC----------------------Ccccccc
Confidence 11246789999999999999999999999997 88999987554211111 1122211
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcC--CeEEEccccccCCccccC
Q 043977 549 RTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLR--REVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~--~~iiigsT~Ii~~~~fl~ 625 (625)
+. .|.... ....+.+++||||||||||+|+|++|+|+++.+ ++|+||||+|+||++|++
T Consensus 502 ~~-~~~~~~-----------------~~~~~~~~viVf~vGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~ 562 (564)
T PF00995_consen 502 KP-SRSKTQ-----------------PSNKPRKRVIVFFVGGVTYSEIRALRELSKKLGPGKEIIIGSTSILNPNDFLE 562 (564)
T ss_dssp -----------------------------S-SSEEEEEEETEBEHHHHHHHHHHHTTSSSSSEEEEEESSBE-HHHHHH
T ss_pred cc-cccccc-----------------cccCCCCEEEEEEEcCCcHHHHHHHHHHHHhhCCCcEEEEEeCCccCHHHHHH
Confidence 10 111100 012357889999999999999999999999988 999999999999999974
No 3
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-83 Score=645.87 Aligned_cols=514 Identities=24% Similarity=0.430 Sum_probs=424.9
Q ss_pred CCCCcEEEEEeCCccchhccccCchHHHhcCCeEEecccC-CCCCCCCCcEEEEecCCHHHHHHHHHHhcCCCCCcceEE
Q 043977 8 DSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFR-RRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAY 86 (625)
Q Consensus 8 ~~~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~-~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~~~~~y~~~~ 86 (625)
.+++.|||++|+.|..++|.|++.|+|+++.|.++++|++ .|+.+.+..||+|||||++||+.+++++. +|+|..||
T Consensus 18 ~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~khLkcvvfiRPT~eniq~L~~ELr--nPry~~Y~ 95 (549)
T KOG1299|consen 18 SGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIKHLKCVVFIRPTPENIQLLIEELR--NPRYGEYH 95 (549)
T ss_pred cCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhhCceEEEEeccChHHHHHHHHHhc--CCcceeEE
Confidence 4668999999999999999999999999999999999987 68899999999999999999999999996 59999999
Q ss_pred EEecCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHHHHHHHHH
Q 043977 87 VFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVF 166 (625)
Q Consensus 87 i~f~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~ 166 (625)
|+|++.+|+..++.||++ +...-|+.+.|+++||+++++++|||++|+.|.+..+ +....++++.+||.+|+
T Consensus 96 lyFsN~i~ks~le~LAes-D~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~~~-------w~~~~l~R~~~GI~All 167 (549)
T KOG1299|consen 96 LYFSNIISKSDLERLAES-DEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESSLN-------WDPGALTRSTQGIIALL 167 (549)
T ss_pred EEEeccCCHHHHHHHHhc-chHHHHHHHHHHHHhhhccCCceeecCCchhhccccc-------cChhhhhHhHhhHHHHH
Confidence 999999999999999976 3456678899999999999999999999998876433 12467889999999999
Q ss_pred HHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhccCCCCCCCC-CeeEEEecCCCCccccccchhchhHH
Q 043977 167 ASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKSIPNFPQTE-TCELLILDRSVDQIAPVIHEWTYDAM 245 (625)
Q Consensus 167 ~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~~~~-~~~LiIlDR~~DliTPLlh~~TYqaL 245 (625)
.+|+..|.|||++.+ ..|+++|+.+...|.+.....+|+.++ .|+|||+||+.||+||||+|||||||
T Consensus 168 LsLK~~P~IRYq~~S-----------~~~~~lAe~vs~~i~~E~~lFdfr~~~~~p~LLiLDR~~DpvTPLL~qWTYQaM 236 (549)
T KOG1299|consen 168 LSLKKKPVIRYQTSS-----------RACKRLAEEVSYRITKESTLFDFRRTDSPPLLLILDRRDDPVTPLLNQWTYQAM 236 (549)
T ss_pred HhccCCCeeEeecCC-----------HHHHHHHHHHHHHHhhhhhhcccccCCCCCeEEEEecCCCCCchhhhHHHHHHH
Confidence 999999999998873 578999999998887744455676544 67999999999999999999999999
Q ss_pred hhhhccCCCCeEEEeecCCCCCCccceEEecC-CCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCCCC
Q 043977 246 CHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLE-DHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGGEL 324 (625)
Q Consensus 246 i~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~-~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (625)
+||++||++|.|.+.. ..+.+.+.++++|+ .+|+||+..++.||+|+++.|+..+++|+.+.+ . +.+..
T Consensus 237 vHEl~gi~nnrvdls~--~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~fq~k~~---~-----~~~ie 306 (549)
T KOG1299|consen 237 VHELLGIKNNRVDLSK--VPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSEFQFKTK---T-----NSNIE 306 (549)
T ss_pred HHHHhccccCEEeecc--CCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHHHHHhhh---h-----chhhh
Confidence 9999999999999875 22333445667775 799999999999999999999999999987432 2 23466
Q ss_pred CHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCCh---HHHHHHHhcCCCCCchhHH
Q 043977 325 STRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGA---KDVINFLRMKQDVTPENKL 401 (625)
Q Consensus 325 s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~~---~~~~~~l~~~~~~~~~dkl 401 (625)
++.+|++|++.+|++++.+..++.|+.+..++++..+.++|.+++|+||++++..+.. .++.++|. +..++..|++
T Consensus 307 si~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~~~i~~LL~-n~~vs~~d~l 385 (549)
T KOG1299|consen 307 SIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGADFNDIKKLLQ-NEKVSEIDRL 385 (549)
T ss_pred hHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhHHHHHHHHc-CCcccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999966543 45677777 4789999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHH---hCCChhHHHHHHHHHhhcccccCCCCCCccccc--ccccccchhcccCCCCC
Q 043977 402 RLLMIYASVYPEKFEGDKASKLMQL---ARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLK--FDGQKTKQAARKERPGE 476 (625)
Q Consensus 402 RLl~L~~l~~~~gl~~~~~~~llq~---~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~--f~~~k~~~~~~~~~~~~ 476 (625)
||+|||+|.+. .-++.+..++++. -|- ..-.++.-|.++++...+... -|+.. +.. .++.. +.-++.
T Consensus 386 rLv~lYaLr~e-~~~~~~~~~L~~~l~~~~~--~~~~~v~~ll~~~G~~~R~~d--lf~~~~~v~i--~R~~~-kglkgv 457 (549)
T KOG1299|consen 386 RLVALYALRYE-RHPPNELRQLPQILREQGP--KKPELVPFLLKYAGLHVRQGD--LFGPNDLVPI--ARRFI-KGLKGV 457 (549)
T ss_pred HHHHHHHHHhc-cCChHHHHHHHHHHHhcCC--CcchhHHHHHHhcCccccccc--ccCcchhHHH--HHHHh-hccCcc
Confidence 99999999994 5566666565543 343 234455666667666554421 12211 111 11111 122345
Q ss_pred ccccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCcccCCCCCCCCC
Q 043977 477 EETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAKP 556 (625)
Q Consensus 477 ~~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 556 (625)
++.| .+|.|+++++++++.+|+|++-.||++.... .
T Consensus 458 ENVy--tQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~-------------------------------s----------- 493 (549)
T KOG1299|consen 458 ENVY--TQHQPLLKSTLEDLFRGRLKEIDYPFLGSQT-------------------------------S----------- 493 (549)
T ss_pred hhhh--hccCHHHHHHHHHHHhcccccCCCccccccc-------------------------------c-----------
Confidence 5655 6999999999999999999988899985211 0
Q ss_pred CCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhh-cCCeEEEccccccCCccccC
Q 043977 557 QNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTK-LRREVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~-~~~~iiigsT~Ii~~~~fl~ 625 (625)
..+++.|||||+||+||+|.|.++++... .|.+|++|+|.|+|.+.|++
T Consensus 494 --------------------~~~pq~IIVfivGGaTYEEa~~V~~~N~tn~g~rvvLgGttvlntk~f~~ 543 (549)
T KOG1299|consen 494 --------------------RDRPQDIIVFIVGGATYEEARVVHELNATNPGVRVVLGGTTVLNTKSFID 543 (549)
T ss_pred --------------------cCCCceEEEEEECCccHHHHHHHHHHhcCCCceEEEEcceEEechHHHHH
Confidence 12578899999999999999999999754 68999999999999999873
No 4
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-82 Score=666.32 Aligned_cols=530 Identities=20% Similarity=0.328 Sum_probs=429.2
Q ss_pred CCcEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCC-CCCcEEEEecCCHHHHHHHHHHhcC--CCCCcceEE
Q 043977 10 KSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPL-PSMDAVYFIQPSKENVVMFLSDMSG--REPLYKKAY 86 (625)
Q Consensus 10 ~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~-~~~~aIy~i~Pt~e~i~~i~~d~~~--~~~~y~~~~ 86 (625)
+|.|+||+|+.++++|+++.+++.|.+|||.....++..+.|. ...+.|||+||+.++++.|+.++.+ +...-+.||
T Consensus 33 pG~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~~vy~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~ 112 (600)
T KOG1302|consen 33 PGKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQVVYFVRPRLENMQLIAEHVENVQRDGFTRDYH 112 (600)
T ss_pred CCceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCeEEEEEcCchHHHHHHHHHHhhhhhchhcceeE
Confidence 3689999999999999999999999999997666776655332 3467999999999999999999974 334568999
Q ss_pred EEecCCCCHH--HHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHHHHHHH
Q 043977 87 VFFSTPIPKE--LVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIAT 164 (625)
Q Consensus 87 i~f~~~~~~~--~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia~~L~s 164 (625)
++| +|+. +|+.+.++.++++.+ .+.|++++++|+|.|++||+.|.+|.++|.++|. +.+..+|+++.+
T Consensus 113 vi~---~P~~~~~c~~~Lee~gv~~~v-~~~e~~~~~lpld~DllSlEl~~~~~d~~~~gd~------s~l~~va~~l~~ 182 (600)
T KOG1302|consen 113 VIF---VPRRSSLCETLLEEEGVYGLV-LVEEQILDLLPLDGDLLSLELPNSFLDLYLDGDQ------SSLYHVADALVS 182 (600)
T ss_pred EEE---eccHHHHHHHHHHhccccccc-ccchhhhhhccccccchhccchHHHHHHhhcccc------chhHHHHHHHHH
Confidence 999 6664 799999989999888 6999999999999999999999999999998874 789999999999
Q ss_pred HHHHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhccC---CCCC-CCCCeeEEEecCCCCccccccchh
Q 043977 165 VFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKSI---PNFP-QTETCELLILDRSVDQIAPVIHEW 240 (625)
Q Consensus 165 l~~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~---~~~~-~~~~~~LiIlDR~~DliTPLlh~~ 240 (625)
++..+|.+|.|+..|+ .|+++++++++..++ .+.+ .+++++||++||++|++||||||+
T Consensus 183 LQ~~~G~ip~v~g~G~-----------------~ak~~~~l~~~l~~e~~t~n~~~~~~~~~liLlDR~~D~vtpLlTQl 245 (600)
T KOG1302|consen 183 LQRLYGIIPKVYGKGE-----------------CAKRVWELLKKLEREEATENNGDRPEIDHLILLDRDVDPVTPLLTQL 245 (600)
T ss_pred HHHhhCCCcceeeccH-----------------HHHHHHHHHHHHhhccccccCCCccccceEEEEeccCcccchhhhHH
Confidence 9999999999999998 466777777665541 1122 256889999999999999999999
Q ss_pred chhHHhhhhccCCCCeEEEeecCCC----C----CCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHH
Q 043977 241 TYDAMCHDLLDMDGNKYVLEVPSKT----G----GQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAA 312 (625)
Q Consensus 241 TYqaLi~dl~~I~~~~v~~~~~~~~----g----~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~ 312 (625)
||+||+||+|||.+|.|+++.+..+ | +..+.+.+.++..|++|+++|++||+.|++.+++++++++..++.
T Consensus 246 tYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deIy~eiR~k~f~~v~~~lsk~ak~l~~~~~~- 324 (600)
T KOG1302|consen 246 TYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEIYAEIRNKHFNAVGPLLSKKAKELQAQYET- 324 (600)
T ss_pred HHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999888764221 1 223557778889999999999999999999999999999876542
Q ss_pred HhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCChHHHHHHHhc-
Q 043977 313 QIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRM- 391 (625)
Q Consensus 313 ~~~~~~~~~~~~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~~~~~~~~l~~- 391 (625)
+.+.++++||++||++||.+++++++++.|+++|+.+++.+++..|.+.+.+||+++.|.+..++ .++|++
T Consensus 325 -------r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~~~f~~~l~lE~ell~~~d~~k~-~~~IeEl 396 (600)
T KOG1302|consen 325 -------RRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKNEDFRKLLKLEHELLEGNDSDKD-FDYIEEL 396 (600)
T ss_pred -------hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCcccc-hHHHHHH
Confidence 24578999999999999999999999999999999999999999999999999999998875544 444443
Q ss_pred -CCCCCchhHHHHHHHHHHhCCCCCChHHH----HHHHHHhCCChhHHHHHHHHHhhcccccCCCCCC--------cccc
Q 043977 392 -KQDVTPENKLRLLMIYASVYPEKFEGDKA----SKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSST--------DFSL 458 (625)
Q Consensus 392 -~~~~~~~dklRLl~L~~l~~~~gl~~~~~----~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~--------~~~~ 458 (625)
..+.+...+|||+||.|++. +|++++++ +.++|.||+ +++.++.||+++|++..+...+- .|+.
T Consensus 397 I~~~~~~~~vLRLicL~Slt~-~Gl~~k~l~~~rr~~lqsYG~--ehl~tl~nL~kaGLl~~q~~~~~~~~~~~~~~~st 473 (600)
T KOG1302|consen 397 IYQEVPLNNVLRLICLLSLTC-NGLKPKDLDHYRREYLQSYGY--EHLLTLQNLEKAGLLREQTGGRKLHTKSSKRNYST 473 (600)
T ss_pred HhhcccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhhH--HHHHHHHHHHHcCCcccccCCCcchhhHHHHHHHH
Confidence 35789999999999999997 79998764 678999999 99999999999999986553220 2222
Q ss_pred cccccccchhccc---CCCCCccccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCC
Q 043977 459 KFDGQKTKQAARK---ERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTA 535 (625)
Q Consensus 459 ~f~~~k~~~~~~~---~~~~~~~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (625)
+ .++.++..+ +.+|+|++|+||||+|+++||+|++++.....+.|--++..+ |..
T Consensus 474 ~---~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~~l~----g~~--------------- 531 (600)
T KOG1302|consen 474 W---ANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIRNLP----GPH--------------- 531 (600)
T ss_pred H---HhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHHHccCC----CCc---------------
Confidence 2 234444443 336999999999999999999999999854444443333222 110
Q ss_pred CCccccCCCcccCCCCCCCCCC-CCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEcc
Q 043977 536 PSEKKTGHSVRSRRTPSWAKPQ-NSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLGS 614 (625)
Q Consensus 536 ~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigs 614 (625)
+.. .+|.... ++... .+...+.++|||+|||||+||+|+|+|++..|++|+|+|
T Consensus 532 ---------~e~---~~~~~~~~~~~~~-------------~~g~~R~~lVff~GG~T~~EIAalr~l~~~~~~~f~i~T 586 (600)
T KOG1302|consen 532 ---------FEE---VTWTPSDIASKNN-------------SPGALRVTLVFFLGGCTYAEIAALRFLAKLEGYRFLIAT 586 (600)
T ss_pred ---------hhh---cccChhhhccccc-------------CCCCcceEEEEEECCccHHHHHHHHHHHhhcCceEEEEe
Confidence 000 0111100 00000 011378999999999999999999999999999999999
Q ss_pred ccccCCccccC
Q 043977 615 TSFNDPPEYIS 625 (625)
Q Consensus 615 T~Ii~~~~fl~ 625 (625)
|+++|+.++++
T Consensus 587 t~ling~~ll~ 597 (600)
T KOG1302|consen 587 TGLINGSSLLE 597 (600)
T ss_pred ccccchHHHHH
Confidence 99999999874
No 5
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.5e-81 Score=669.23 Aligned_cols=531 Identities=25% Similarity=0.445 Sum_probs=418.7
Q ss_pred cEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcCCCCCcceEEEEecC
Q 043977 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFST 91 (625)
Q Consensus 12 ~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~~~~~y~~~~i~f~~ 91 (625)
|||||+|+.+..+||+|+++++|++|||++++.|++.|+|.++.+|||||+||.+++++|++|+.+..|.|..||+.|++
T Consensus 25 ~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~~~aiy~v~pt~e~i~~i~~D~~~~~~~Y~~~~~~f~~ 104 (582)
T COG5158 25 WKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISDLPAIYFVRPTKENIDLILEDLEQWDPFYLNYHISFLN 104 (582)
T ss_pred eEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCCCCEEEEEcCchHHHHHHHHHHhccCccccceeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999998656899999999999
Q ss_pred CCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHHHHHHHHHHHcCC
Q 043977 92 PIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKE 171 (625)
Q Consensus 92 ~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~ 171 (625)
.++..+++.+++. ++...|.++.++++||+++|+++|++++|..|...+.++. ...+..|+.+|+++|.++|.
T Consensus 105 ~~~~~l~e~l~es-~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~~~~------~~~~~~~v~gl~S~~~slg~ 177 (582)
T COG5158 105 TVTESLLELLAES-GVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESSLPST------TEALIKIVNGLFSLCVSLGR 177 (582)
T ss_pred cchHHHHHHHhhc-CchhheeeeeeeecceEEechHhHhhcCchhhhhhcCCCc------hHHHHHHHhhHHHHHhhcCC
Confidence 9988888888765 6777899999999999999999999999999888876321 23445899999999999999
Q ss_pred CcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhcc-CCCC---CCCCCeeEEEecCCCCccccccchhchhHHhh
Q 043977 172 FPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKS-IPNF---PQTETCELLILDRSVDQIAPVIHEWTYDAMCH 247 (625)
Q Consensus 172 ~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~-~~~~---~~~~~~~LiIlDR~~DliTPLlh~~TYqaLi~ 247 (625)
+|.|||.++. .|.++|+.+-..+..... ..++ ..+.++.|||+||+.|++|||+|+||||||+|
T Consensus 178 ~P~Ir~~~~~------------~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~~~LIIlDRs~D~iTPlLh~wTYqaml~ 245 (582)
T COG5158 178 IPIIRYSGGK------------NAEHMAKKLSDEIRNELSINFDGVVSKNPLRPILIILDRSLDPITPLLHQWTYQAMLH 245 (582)
T ss_pred cceEEecCCc------------hHHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCcccchHHHHHHHHHHH
Confidence 9999998763 344555555444432222 1121 11248999999999999999999999999999
Q ss_pred hhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCCCCCHH
Q 043977 248 DLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGGELSTR 327 (625)
Q Consensus 248 dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 327 (625)
|+++|++|.|.++.....| ++++...++.+|++|.++||+||++|++.|.+.+++++.+++. .. .....++.
T Consensus 246 Dl~~~~~~~v~~~~~~~~g--~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~~~~~l~~~~~~--~~----~~~~~s~~ 317 (582)
T COG5158 246 DLLGINNNIVTIPSSSVNG--PEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKKLAKELKTKAQL--RH----KENAKSVN 317 (582)
T ss_pred HHHHhhcCeEEeccccccc--ccceeccCCcccHhHHHhccCchhhHHHHHHHHHHHHHHHHhh--hh----hhhcccHH
Confidence 9999999999997654544 5566677789999999999999999999999999999886542 22 12346999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCChH---HHHHHHhcCCCCCchhHHHHH
Q 043977 328 DLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAK---DVINFLRMKQDVTPENKLRLL 404 (625)
Q Consensus 328 el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~~~---~~~~~l~~~~~~~~~dklRLl 404 (625)
+|++||.+||++++.++.+.+|++|+++|++.+++++|.++.++||++.++.+... +++.+++. .....+||||+
T Consensus 318 dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~~~~~i~Dli~~l~~--~~~E~~klRll 395 (582)
T COG5158 318 DIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGNDVKSDISDLIELLES--GVEEDDKLRLL 395 (582)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhc--CchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998875433 44445542 22222699999
Q ss_pred HHHHHhCCCCC-ChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCC-----Cc---ccccccccccchhcccCCCC
Q 043977 405 MIYASVYPEKF-EGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSS-----TD---FSLKFDGQKTKQAARKERPG 475 (625)
Q Consensus 405 ~L~~l~~~~gl-~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~-----~~---~~~~f~~~k~~~~~~~~~~~ 475 (625)
|||+++. +|+ .+.+..+++-.-|++.+++..+.+|..+|....+.... |. .+.++. ....-+..+..
T Consensus 396 ilysL~~-~~~~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~g~~d~l~~~~n---~y~~s~~~~~~ 471 (582)
T COG5158 396 ILYSLTK-DGLIKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISLKRGDKDSLFQWFN---TYSLSREHQGV 471 (582)
T ss_pred HHHHHhc-CcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhcccccccccCCcccccCccc---ccccccccCCC
Confidence 9999997 563 33344455666677779999999999999875433110 11 111111 11111011235
Q ss_pred CccccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCcccCCCCCCCC
Q 043977 476 EEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAK 555 (625)
Q Consensus 476 ~~~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 555 (625)
.+..++|++|.|..+++...++.+.+-...++.+.. +.+..+ +.| +
T Consensus 472 ~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~~--------------------------------s~~~~~-~k~-~ 517 (582)
T COG5158 472 PDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQ--------------------------------SLRLSR-PKG-R 517 (582)
T ss_pred chHHHHHHhhcchhcccchhhhhhhhcccccchhcc--------------------------------ceeecc-ccc-c
Confidence 677889999999999999999988755443333220 111111 112 1
Q ss_pred CCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcC-CeEEEccccccCCccccC
Q 043977 556 PQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLR-REVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~-~~iiigsT~Ii~~~~fl~ 625 (625)
.+.. ...++++++|||+||+||.|++++++++++.+ ++|++|||.|+||.+|++
T Consensus 518 ~~~~----------------~~~~~~~~~VfviGG~ty~E~~~~~e~~~~~~~~~ii~Gst~iltp~e~l~ 572 (582)
T COG5158 518 SRSN----------------KKIPQQRILVFVIGGVTYEELRVLYELNESQNSVRIIYGSTEILTPAEFLD 572 (582)
T ss_pred cccc----------------cccccceEEEEEECCeehHHHHHHHHHHhhcCCeeEEEcCCceecHHHHHH
Confidence 1100 01368999999999999999999999999988 999999999999999873
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-78 Score=618.33 Aligned_cols=533 Identities=22% Similarity=0.404 Sum_probs=417.5
Q ss_pred cEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcCCCCCcceEEEEecC
Q 043977 12 WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFST 91 (625)
Q Consensus 12 ~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~~~~~y~~~~i~f~~ 91 (625)
|||||+|..+..+||++++++||++||||++..|.+.|+|+|+++|||||+||.||+++|++|+++ ..|.+||++|++
T Consensus 41 WKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPAVYFV~Pt~eNid~i~~Dl~~--~lY~~~ylNF~S 118 (621)
T KOG1301|consen 41 WKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPAVYFVSPTEENIDRIIQDLSK--GLYDSYYLNFIS 118 (621)
T ss_pred eEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCeEEEeCCchHhHHHHHHHHHH--hhhhhheeeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999975 699999999999
Q ss_pred CCCHHHHHHHhh---CCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHHHHHHHHHHH
Q 043977 92 PIPKELVNHIKS---DTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFAS 168 (625)
Q Consensus 92 ~~~~~~~e~la~---~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~~~ 168 (625)
++|+..+|.||+ +.|.+.+|+++++.+++|+.+|+|+|+|.++.+|..+..++ ..+...+..+++||++|+++|.+
T Consensus 119 si~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL~~~~~~~~~n~p~-t~e~ei~~~~~~IvdgLF~v~vT 197 (621)
T KOG1301|consen 119 SISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSLGMQNSFHAINRPS-TTEEEINALMDRIVDGLFSVFVT 197 (621)
T ss_pred cccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhhcccccchhccCCC-chHHHHHHHHHHHHHHHHHHhee
Confidence 999999999984 56888899999999999999999999999999986655532 23556678999999999999999
Q ss_pred cCCCcEEEE-cCCCCCCCccccccchhHHHHHHHHHHHHHHhccC-----CCCCCCCCeeEEEecCCCCccccccchhch
Q 043977 169 MKEFPMVRY-RAPKASDASTTTFRDLIPSKLATAVWNCIEKYKSI-----PNFPQTETCELLILDRSVDQIAPVIHEWTY 242 (625)
Q Consensus 169 lg~~P~I~~-~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~-----~~~~~~~~~~LiIlDR~~DliTPLlh~~TY 242 (625)
+|.+|.||| +|+ + ++++|++|.+++++.+-..+.+ +.+...++|+|+|+||++|++||+.|.|||
T Consensus 198 lG~VPiIRcp~g~---a------AEmvA~kL~qKLRd~l~d~k~~lft~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtY 268 (621)
T KOG1301|consen 198 LGEVPIIRCPKGG---A------AEMVARKLDQKLRDNLRDTKNNLFTMDGGGAGFQRPVLVLLDRNIDLATPLHHTWTY 268 (621)
T ss_pred cccceeEECCCCC---H------HHHHHHHHHHHHHHHhHhhcccceeccCcccCCCCceEEEEecccccccccccceeh
Confidence 999999998 333 2 3789999999999888644441 122224689999999999999999999999
Q ss_pred hHHhhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhhh--cc--
Q 043977 243 DAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQ--SS-- 318 (625)
Q Consensus 243 qaLi~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~--~~-- 318 (625)
|||+||+|+++.|.|+++.+. ....+|.+.|+.+|+||....+..|++|++.+.+++.+|+.+. +.+++ |.
T Consensus 269 qaLvhDvl~l~lN~vtv~~~~---~~~~~k~yDld~~D~fW~~n~~~pFP~VAE~Ve~eL~~Yk~~~--~ei~r~~G~sg 343 (621)
T KOG1301|consen 269 QALVHDVLDLELNRVTLESES---KRKKKKSYDLDPNDKFWRRNKGSPFPEVAENVEEELESYKNEE--AEIKRKMGLSG 343 (621)
T ss_pred HHHHHHHHhcccceEEeeccc---cCCCCccccCCCccHHHHhcCCCCCchHHHHHHHHHHHHHhhH--HHHHhhcCCCc
Confidence 999999999999999998643 2344678999999999999999999999999999999998754 44543 11
Q ss_pred -c---CCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCChHHHHHHHhcCCC
Q 043977 319 -R---DGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQD 394 (625)
Q Consensus 319 -~---~~~~~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~~~~~~~~l~~~~~ 394 (625)
. .+...+...+++.|.+||++.++++.+++|+|||+++++.+++|.|+.++++|+++.+ ..-.+.+++.+.+...
T Consensus 344 ~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~IkeR~lD~ff~~E~~~~~-~~l~~~~l~~~~~~~~ 422 (621)
T KOG1301|consen 344 EDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIKERKLDDFFEVEKKIMS-TTLDRSLLDILEDGEA 422 (621)
T ss_pred ccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhccccc-ccccHHHHHHHhcccC
Confidence 1 1112344599999999999999999999999999999999999999999999999987 3334567888875567
Q ss_pred CCchhHHHHHHHHHHhCCCCCChHHH---HHHHHHhCCChhHHHHHHHHHhhcccccCCCC-CC---cccccccccccch
Q 043977 395 VTPENKLRLLMIYASVYPEKFEGDKA---SKLMQLARLSSEDMKIVNNMRLLAGSLNSKKS-ST---DFSLKFDGQKTKQ 467 (625)
Q Consensus 395 ~~~~dklRLl~L~~l~~~~gl~~~~~---~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~-~~---~~~~~f~~~k~~~ 467 (625)
.+++||||++++|.++.. -.+..+. +..++..|+....+..+.++..+.-....... ++ .+-.+|. +
T Consensus 423 gt~EDkLR~~Ii~~ls~e-t~~~s~le~~e~al~e~~~d~~Al~yvkr~k~~~~~~s~~~~~~~~~t~~~~~~~-----k 496 (621)
T KOG1301|consen 423 GTPEDKLRLFIIYYLSTE-TVPQSDLEAVENALTEAGCDLNALKYVKRLKEITKMSSATSAYSGTTTKIVDLFE-----K 496 (621)
T ss_pred CChHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccccccCCcccHHHHHH-----H
Confidence 899999999999999973 4445443 45677788876667766665554322211110 01 0001110 0
Q ss_pred hcccCCCCCcccccccc--------ccHHHHHHHHHHHcCCC--CCCCCCcccCCCCccccccccccccccCCCCCCCCC
Q 043977 468 AARKERPGEEETWALFK--------FYPIIEELIENLCKGEL--PKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPS 537 (625)
Q Consensus 468 ~~~~~~~~~~~~y~~s~--------y~Pl~~~lie~~~~~~l--~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (625)
+.. ...+++.+| -.=-+.+++|.+...+- ...+|.|++.... .|+
T Consensus 497 l~~-----qg~~~vm~GVKNLlp~~q~lPvT~iveal~~~~sn~etddYl~~DPk~~--k~~------------------ 551 (621)
T KOG1301|consen 497 LYS-----QGSSFVMEGVKNLLPKKQNLPVTRIVEALMDPKSNPETDDYLYFDPKLS--KGG------------------ 551 (621)
T ss_pred Hhh-----ccHHHHHhhHHhcCcccccCcHHHHHHHhhCCCCCccccceEeeccccc--cCC------------------
Confidence 000 011111111 11137899999998653 3455877763221 100
Q ss_pred ccccCCCcccCCCCCCCCCCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhc--CCeEEEccc
Q 043977 538 EKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKL--RREVVLGST 615 (625)
Q Consensus 538 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~--~~~iiigsT 615 (625)
...+... ..+-+..|||||||.+|-|+..|.+++++. .++||+|+|
T Consensus 552 ----~~~~~~~----------------------------r~~f~eaIVFvVGGGNYiEYqnL~d~~krq~~~krIiYGsT 599 (621)
T KOG1301|consen 552 ----SSSLPIK----------------------------RQPFQEAIVFVVGGGNYIEYQNLVDLAKRQQTVKRIIYGST 599 (621)
T ss_pred ----Ccccccc----------------------------ccchhheEEEEEcCcCeeehhhHHHHHHhhcccceeEecch
Confidence 0011111 124678999999999999999999998865 489999999
Q ss_pred cccCCccccC
Q 043977 616 SFNDPPEYIS 625 (625)
Q Consensus 616 ~Ii~~~~fl~ 625 (625)
.|+||.+|++
T Consensus 600 eIln~~eFl~ 609 (621)
T KOG1301|consen 600 EILNAREFLE 609 (621)
T ss_pred hcCCHHHHHH
Confidence 9999999974
No 7
>PF14071 YlbD_coat: Putative coat protein
Probab=39.26 E-value=34 Score=30.28 Aligned_cols=14 Identities=36% Similarity=0.880 Sum_probs=12.6
Q ss_pred EecCCCChHHHHhh
Q 043977 274 VLLEDHDPVWLELR 287 (625)
Q Consensus 274 ~~l~~~D~~~~~~R 287 (625)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 56789999999999
No 8
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=37.73 E-value=41 Score=32.75 Aligned_cols=36 Identities=17% Similarity=0.456 Sum_probs=29.1
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCcc
Q 043977 583 IFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPE 622 (625)
Q Consensus 583 iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~ 622 (625)
..|.+.||+|-..++.+.. .|.++++.++.|++.++
T Consensus 171 ~~i~v~GGI~~~nv~~l~~----~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE----AGADVFVAGSAVFGAPD 206 (220)
T ss_pred ceEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCC
Confidence 5677889999977766665 58999999999997654
No 9
>PLN02334 ribulose-phosphate 3-epimerase
Probab=28.85 E-value=56 Score=32.31 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=28.9
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCcc
Q 043977 583 IFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPE 622 (625)
Q Consensus 583 iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~ 622 (625)
+-|+++||||-.-++.+... |.++++.++.|...++
T Consensus 175 ~~I~a~GGI~~e~i~~l~~a----Gad~vvvgsai~~~~d 210 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAEA----GANVIVAGSAVFGAPD 210 (229)
T ss_pred CcEEEeCCCCHHHHHHHHHc----CCCEEEEChHHhCCCC
Confidence 45999999998887777654 8889998888887654
No 10
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.74 E-value=69 Score=31.56 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=29.1
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCcc
Q 043977 582 RIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPE 622 (625)
Q Consensus 582 ~iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~ 622 (625)
.+.|.+.||||-..++.+.+ .|.++++.++.|...++
T Consensus 167 ~~~I~vdGGI~~eni~~l~~----aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAE----AGADMFVAGSAIFGQPD 203 (220)
T ss_pred CeeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCC
Confidence 47788999999777766654 48899999999886554
No 11
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=24.57 E-value=80 Score=29.69 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=27.3
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCcc
Q 043977 583 IFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPE 622 (625)
Q Consensus 583 iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~ 622 (625)
+-|++.||++-..++.+.. .|.+.++.++.++...+
T Consensus 151 ~pv~a~GGi~~~~i~~~~~----~Ga~~i~~g~~i~~~~~ 186 (196)
T cd00564 151 IPVVAIGGITPENAAEVLA----AGADGVAVISAITGADD 186 (196)
T ss_pred CCEEEECCCCHHHHHHHHH----cCCCEEEEehHhhcCCC
Confidence 5589999999876666555 37888888888876543
No 12
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=23.86 E-value=77 Score=30.50 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=27.8
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCcc
Q 043977 583 IFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPE 622 (625)
Q Consensus 583 iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~ 622 (625)
+-|+..||||-..++.+.. .|.+.+++++.|.+..+
T Consensus 161 ~~v~a~GGI~~~~i~~~~~----~Ga~gv~~gs~i~~~~d 196 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLE----AGADGVAVVSAITGAED 196 (212)
T ss_pred CCEEEECCcCHHHHHHHHH----cCCCEEEEeHHhhcCCC
Confidence 6699999999876665554 38889998888886543
No 13
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=23.82 E-value=79 Score=30.12 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=27.5
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCcc
Q 043977 583 IFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPE 622 (625)
Q Consensus 583 iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~ 622 (625)
+-|+.+||+|-..++.+. ..|.+.+.+++.|+..++
T Consensus 153 ~pv~a~GGI~~~~~~~~~----~~G~~gva~~~~i~~~~d 188 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVL----AAGADGVAVVSAIMQAAD 188 (196)
T ss_pred CCEEEECCcCHHHHHHHH----HcCCCEEEEhHHhhCCCC
Confidence 449999999977666554 348899999999987643
No 14
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=22.45 E-value=71 Score=32.19 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCC-HHHHHHHHHHHhhcCCeEEEccccc
Q 043977 581 QRIFVFMIGGAT-RSELRACYKLTTKLRREVVLGSTSF 617 (625)
Q Consensus 581 ~~iiVf~iGGvT-y~Ei~al~~L~~~~~~~iiigsT~I 617 (625)
++=+|..+||+| -+--....+++.++|++.+|+|++|
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I 124 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI 124 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence 334566778776 3444556799999999999999876
No 15
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=21.02 E-value=1.8e+02 Score=24.45 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=25.6
Q ss_pred CCCeEEEEEEcC--CCHHHHHHHH-HHHhhc--CCeEEEccc
Q 043977 579 MGQRIFVFMIGG--ATRSELRACY-KLTTKL--RREVVLGST 615 (625)
Q Consensus 579 ~~~~iiVf~iGG--vTy~Ei~al~-~L~~~~--~~~iiigsT 615 (625)
.-+.++|-|.|| +|+.|+..+- .+.+.. +.+|++|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 357899999997 7899998765 445554 578888865
No 16
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=20.26 E-value=1.1e+02 Score=29.28 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=26.7
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCcc
Q 043977 583 IFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPE 622 (625)
Q Consensus 583 iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~ 622 (625)
+-|++.||+|-.-++.+. +.|.+.++.++.|.++.+
T Consensus 166 ~~i~v~GGI~~env~~l~----~~gad~iivgsai~~~~d 201 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELA----EAGADILVAGSAIFGADD 201 (210)
T ss_pred ceEEEECCcCHHHHHHHH----HcCCCEEEEChHHhCCCC
Confidence 558899999965544433 458899999999987665
Done!