Query 043977
Match_columns 625
No_of_seqs 167 out of 983
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 2E-104 7E-109 887.6 43.9 549 1-625 18-580 (594)
2 3puk_A Syntaxin-binding protei 100.0 4E-103 1E-107 876.6 36.3 541 1-625 22-575 (592)
3 2xhe_A UNC18; exocytosis, exoc 100.0 3E-100 9E-105 866.8 49.9 571 10-625 23-610 (650)
4 3c98_A Syntaxin-binding protei 100.0 5E-101 2E-105 869.0 42.8 548 1-625 30-592 (606)
5 1epu_A S-SEC1; parallel beta-s 100.0 6E-101 2E-105 866.4 42.0 545 10-625 23-583 (591)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 3.6E-90 1.2E-94 785.7 37.3 542 9-625 55-656 (671)
7 1y9j_A SEC1 family domain cont 99.9 6.4E-27 2.2E-31 214.3 8.4 110 9-120 47-159 (159)
8 3he4_B Synzip5; heterodimeric 46.3 47 0.0016 21.7 4.9 32 324-355 3-34 (46)
9 1tqx_A D-ribulose-5-phosphate 19.6 73 0.0025 30.2 3.6 36 582-621 173-208 (227)
10 1h1y_A D-ribulose-5-phosphate 15.3 65 0.0022 30.3 2.1 37 582-622 173-209 (228)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=2e-104 Score=887.58 Aligned_cols=549 Identities=31% Similarity=0.593 Sum_probs=451.4
Q ss_pred CCCCCCCCCCCcEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcC-CC
Q 043977 1 MLESTNADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSG-RE 79 (625)
Q Consensus 1 ~~~~~~~~~~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~-~~ 79 (625)
||+++++ +.+|||||+|+.++++||++|++++|+++||++|+.|++.|+|+|+++|||||+||.+||++|++||+. ..
T Consensus 18 ~l~~~~~-~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~~ 96 (594)
T 1dn1_A 18 VIKKVKK-KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPT 96 (594)
T ss_dssp TTGGGCC-TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCHHHHHHHHHTTSSGGG
T ss_pred HHhhccc-CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCCHHHHHHHHHHHhcccc
Confidence 6777753 335999999999999999999999999999999999999999999999999999999999999999974 23
Q ss_pred CCcceEEEEecCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHH
Q 043977 80 PLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMA 159 (625)
Q Consensus 80 ~~y~~~~i~f~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia 159 (625)
++|++|||+|++.+|+.+++.||+. ++.+.|+++.|+++||+|+|+|+|||++|++|..+|.++.. ......++.+|
T Consensus 97 ~~Y~~y~i~Ft~~~~~~~le~La~~-~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~~~--~~~~~~l~~ia 173 (594)
T 1dn1_A 97 AKYRAAHVFFTDSCPDALFNELVKS-RAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKA--QMKNPILERLA 173 (594)
T ss_dssp CCCSEEEEEESSCCCHHHHHHHHHS-GGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGGT--TSHHHHHHHHH
T ss_pred cccceEEEEeCCCCCHHHHHHHHhc-chHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCCccc--ccchHHHHHHH
Confidence 6899999999999999999999975 68899999999999999999999999999999999985321 23467899999
Q ss_pred HHHHHHHHHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhcc-CCCC---CCCCCeeEEEecCCCCcccc
Q 043977 160 KRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKS-IPNF---PQTETCELLILDRSVDQIAP 235 (625)
Q Consensus 160 ~~L~sl~~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~-~~~~---~~~~~~~LiIlDR~~DliTP 235 (625)
++|++||.++|.+|.|||+|+. ..|+++|+.|++.|.++.. ++.+ +..++++|||+||++|++||
T Consensus 174 ~~L~sl~~tlg~~P~IRy~~~~-----------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTP 242 (594)
T 1dn1_A 174 EQIATLCATLKEYPAVRYRGEY-----------KDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSP 242 (594)
T ss_dssp HHHHHHHHHHTCCCEECCCTTS-----------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTT
T ss_pred HHHHHHHHHcCCCCEEEECCCc-----------hHHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCcccccc
Confidence 9999999999999999998873 3578899999999988765 3333 22357899999999999999
Q ss_pred ccchhchhHHhhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhh
Q 043977 236 VIHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQ 315 (625)
Q Consensus 236 Llh~~TYqaLi~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~ 315 (625)
|+||||||||+||+|||++|.|+++.+. .+..++|++.|+++|++|.++||+||++|++.|.+++++|+++++..
T Consensus 243 Llhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~--- 317 (594)
T 1dn1_A 243 VLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMN--- 317 (594)
T ss_dssp TSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC----
T ss_pred ccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhc---
Confidence 9999999999999999999999998632 12345688999999999999999999999999999999998865321
Q ss_pred hcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCC--------hHHHHH
Q 043977 316 QSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAG--------AKDVIN 387 (625)
Q Consensus 316 ~~~~~~~~~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~--------~~~~~~ 387 (625)
..+..+++||++||++||+|+++++.+++|++||++|++.+++ .|++++++||++++|.+. .+.+.+
T Consensus 318 ----~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~ 392 (594)
T 1dn1_A 318 ----TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVP 392 (594)
T ss_dssp ----------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHH
T ss_pred ----ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchhHHHHHHHHH
Confidence 0234578899999999999999999999999999999999987 899999999999998642 134566
Q ss_pred HHhcCCCCCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCCCcccccccccccch
Q 043977 388 FLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQ 467 (625)
Q Consensus 388 ~l~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~f~~~k~~~ 467 (625)
+|. ++.++.+|||||+|||+|++ +|++++++.++++++|++.+++.++.||+++|+...++... .|.++
T Consensus 393 lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~~~---------~k~~~ 461 (594)
T 1dn1_A 393 ILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTL---------RRRSK 461 (594)
T ss_dssp HHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCGG---------GCCCC
T ss_pred HHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccccc---------ccccc
Confidence 776 46799999999999999997 68999999999999999999999999999999765433210 12222
Q ss_pred hcccCCCCCccccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCccc
Q 043977 468 AARKERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRS 547 (625)
Q Consensus 468 ~~~~~~~~~~~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 547 (625)
+.++.+ +.++.|.+|||+|++++++|++++|+|++++|||+.++++... + .+..+
T Consensus 462 ~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~-----------------~-------~~~~s 516 (594)
T 1dn1_A 462 PERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASF-----------------S-------TTAVS 516 (594)
T ss_dssp CCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-----------------------------------
T ss_pred cccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCccc-----------------c-------ccccc
Confidence 333333 5689999999999999999999999999999999976542100 0 01123
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcC-CeEEEccccccCCccccC
Q 043977 548 RRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLR-REVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~-~~iiigsT~Ii~~~~fl~ 625 (625)
.|+++|++...+.+ .+.++|+||||+||+||+|+|++|++++..+ ++||||||+|+||++||+
T Consensus 517 ~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p~~Fl~ 580 (594)
T 1dn1_A 517 ARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLD 580 (594)
T ss_dssp ------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHH
T ss_pred cccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHH
Confidence 34468987543221 1357899999999999999999999999864 899999999999999974
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=4.1e-103 Score=876.58 Aligned_cols=541 Identities=28% Similarity=0.518 Sum_probs=445.1
Q ss_pred CCCCCCCCCCCcEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcC-CC
Q 043977 1 MLESTNADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSG-RE 79 (625)
Q Consensus 1 ~~~~~~~~~~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~-~~ 79 (625)
||+++.+ +.+|||||+|+.+.++||++|++++|+++||++|+.|++.|+|+|+++|||||+||.+||++|++||+. ..
T Consensus 22 ~l~~v~~-~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~~~aIYfv~Pt~eni~~i~~dl~~~~~ 100 (592)
T 3puk_A 22 VFDDCRK-EGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCFLRDFGSKSE 100 (592)
T ss_dssp TTGGGCC-TTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTTSCEEEEECSCHHHHHHHHHHHTGGGC
T ss_pred HHHhhcc-cCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCCCcEEEEEeCCHHHHHHHHHHHhcccc
Confidence 5777753 345999999999999999999999999999999999999999999999999999999999999999974 13
Q ss_pred CCcceEEEEecCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHH
Q 043977 80 PLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMA 159 (625)
Q Consensus 80 ~~y~~~~i~f~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia 159 (625)
++|++|||+|++.+|+.+++.| + .++.+.|+++.|+++||+|+|+++|||++|++|..+|.++..++......++.+|
T Consensus 101 ~~Y~~~~i~F~~~~~~~lle~L-~-~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~~~~~~~~~~~~~l~~ia 178 (592)
T 3puk_A 101 KKYKAAYIYFTDFCPDSLFNKI-K-ASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMA 178 (592)
T ss_dssp CCBSCEEEEESSCCCHHHHHHH-H-HSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSCCSSSTTHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCHHHHHHH-H-hhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcCCcccccccchHHHHHHH
Confidence 5899999999999999999999 3 4688999899999999999999999999999999999865433345678999999
Q ss_pred HHHHHHHHHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHH-hcc-CCCCC-CCCCeeEEEecCCCCccccc
Q 043977 160 KRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEK-YKS-IPNFP-QTETCELLILDRSVDQIAPV 236 (625)
Q Consensus 160 ~~L~sl~~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~-~~~-~~~~~-~~~~~~LiIlDR~~DliTPL 236 (625)
++|++||.++|.+|.|||+|+.. .-|+++|+.+++.|.+ ++. ++.++ ..++++|||+||++|++|||
T Consensus 179 ~~L~sl~~tlg~~P~IRy~~~~~----------~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vtPL 248 (592)
T 3puk_A 179 EQIVTVCATLDENPGVRYKSKPL----------DNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFDPVSTV 248 (592)
T ss_dssp HHHHHHHHHHTCCCEEEECCSSS----------SHHHHHHHHHHHHHHHSSSSCSSCSCCSCCSEEEEEEEGGGCSSTTT
T ss_pred HHHHHHHHhcCCCCeEEECCCch----------HHHHHHHHHHHHHHHHHHhccCCCcCCCCCCceEEEecCCccccccc
Confidence 99999999999999999998732 1356889999888877 443 23332 24689999999999999999
Q ss_pred cchhchhHHhhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 043977 237 IHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQ 316 (625)
Q Consensus 237 lh~~TYqaLi~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~ 316 (625)
+||||||||+||+|||++|.|+++. .| ++|++.|+++|++|.++||+||++|++.|.+++++|+++++.
T Consensus 249 lh~~TYqalv~dll~i~~~~v~~~~---~g---~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~----- 317 (592)
T 3puk_A 249 LHELTFQAMAYDLLPIENDTYKYKT---DG---KEKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMKEISSTKKA----- 317 (592)
T ss_dssp SCCCBHHHHHHHHSCCGGGEEECCS---SS---SCCEEECSTTSSSTTTTTTSBHHHHHTTSCSCSTTTTTCC-------
T ss_pred cccccHHHHHHHHhcccCCEEEecC---CC---ceeEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc-----
Confidence 9999999999999999999999874 12 457899999999999999999999999999999998765432
Q ss_pred cccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCCh----H----HHHHH
Q 043977 317 SSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGA----K----DVINF 388 (625)
Q Consensus 317 ~~~~~~~~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~~----~----~~~~~ 388 (625)
..+..+++||++||++||+|+++++.+++|++||++|++.+++ +|++++++||++++|.+.. + .++++
T Consensus 318 ---~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~~ 393 (592)
T 3puk_A 318 ---TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPV 393 (592)
T ss_dssp --------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSSSCTTCCSCSCCHHHHTTT
T ss_pred ---ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCccchhhHHHHHHHHHH
Confidence 1234688999999999999999999999999999999999987 8999999999999986531 2 33445
Q ss_pred HhcCCCCCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCCCcccccccccccchh
Q 043977 389 LRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQA 468 (625)
Q Consensus 389 l~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~f~~~k~~~~ 468 (625)
|. +..++.+|||||+|||+|++ +|++++++.++++++|++. +..++.||+.+|+...++. +..+.
T Consensus 394 L~-~~~~~~~dkLRL~lLy~L~~-~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg~~~~~~~------------~~~~~ 458 (592)
T 3puk_A 394 LL-NKNHDNCDKIRAVLLYIFGI-NGTTEENLDRLIHNVKIED-DSDMIRNWSHLGVPIVPPS------------QQAKP 458 (592)
T ss_dssp TT-SCSCCHHHHHHHHHHHHHHS-CBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGTCCSSSSB------------SSCCC
T ss_pred Hh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhCCccccCc------------cccCc
Confidence 54 46789999999999999998 6999999999999999987 8999999999997654331 01112
Q ss_pred cccCCCCCccccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCcccC
Q 043977 469 ARKERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSR 548 (625)
Q Consensus 469 ~~~~~~~~~~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 548 (625)
.++. .+.++.|++|||+|++++++|++++|+|+++.|||+.+++..+.+ .+..+.
T Consensus 459 ~rk~-~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~------------------------~~~~s~ 513 (592)
T 3puk_A 459 LRKD-RSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNG------------------------SGAVSA 513 (592)
T ss_dssp CCCC-CCCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC----------------------------------------
T ss_pred cccc-CCCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccC------------------------Cccccc
Confidence 2333 367899999999999999999999999999999999765421100 001134
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcC-CeEEEccccccCCccccC
Q 043977 549 RTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLR-REVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~-~~iiigsT~Ii~~~~fl~ 625 (625)
|+++| +...+.+ ...++++||||+||+||+|+|++|++++..+ ++||||||+|+||++||+
T Consensus 514 r~~~w-~~~~~~~---------------~~~~~riiVFivGGvTysE~r~~~els~~~~~~~vilG~T~i~np~~fl~ 575 (592)
T 3puk_A 514 RQKPR-TNYLELD---------------RKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLD 575 (592)
T ss_dssp ----C-CCCCCCC---------------CSCCSEEEEEEETCEEHHHHHHHHHHHHHCCSSEEEEEESSEECHHHHHH
T ss_pred ccccc-ccCcccc---------------ccCCCeEEEEEeCCcCHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHH
Confidence 44688 4332211 1358999999999999999999999999875 899999999999999974
No 3
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=2.7e-100 Score=866.85 Aligned_cols=571 Identities=26% Similarity=0.508 Sum_probs=447.6
Q ss_pred CCcEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcCCCCCcceEEEEe
Q 043977 10 KSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFF 89 (625)
Q Consensus 10 ~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~~~~~y~~~~i~f 89 (625)
.+|||||+|+.+.++||++|++++|+++||++|+.|+..|+|+|+++|||||+|+.+||++|++||+...|+|+.|||+|
T Consensus 23 ~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIyfv~Pt~~ni~~i~~d~~~~~~~y~~~~i~F 102 (650)
T 2xhe_A 23 GDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFF 102 (650)
T ss_dssp SSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTTSEEEEEECSCHHHHHHHHHHHHSSSCSBSCEEEEE
T ss_pred CCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCCCCEEEEEcCCHHHHHHHHHHHhhcCCCcceEEEEe
Confidence 46999999999999999999999999999999999999999999999999999999999999999985447999999999
Q ss_pred cCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHHHHHHHHHHHc
Q 043977 90 STPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASM 169 (625)
Q Consensus 90 ~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~~~l 169 (625)
++.+|+.+++++|+. ++.+.|+++.|+++||+|+|+|+|||++|++|..+|... .....++.+|++|++||.++
T Consensus 103 ~~~~~~~~le~la~~-~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~-----~~~~~l~~ia~~L~sl~~~l 176 (650)
T 2xhe_A 103 LSPVPDALMAKLASA-KAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSR-----SSSYNIDHLVRRLSTLCTTM 176 (650)
T ss_dssp SSCCCHHHHHHHHHS-GGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTT-----GGGCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc-chhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCc-----cchHHHHHHHHHHHHHHHHc
Confidence 999999999999975 478889889999999999999999999999999999632 23567999999999999999
Q ss_pred CCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhccCCC---CCCCCCeeEEEecCCCCccccccchhchhHHh
Q 043977 170 KEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKSIPN---FPQTETCELLILDRSVDQIAPVIHEWTYDAMC 246 (625)
Q Consensus 170 g~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~~---~~~~~~~~LiIlDR~~DliTPLlh~~TYqaLi 246 (625)
|.+|.|||+|+.+ ..|+++|+.+.+.|.+...+.. .+...+++|||+||++|++|||+||||||||+
T Consensus 177 g~~P~Ir~~~~~~----------~~a~~la~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqaLi 246 (650)
T 2xhe_A 177 NVAPIVRYSSTST----------PGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSPLVHELTYQAAA 246 (650)
T ss_dssp TCCCEEEECTTCC----------HHHHHHHHHHHHHHHHHHTTTSCCCCCCSSCCEEEEECGGGCSSTTTSCCCBHHHHH
T ss_pred CCCCEEEecCCCc----------hHHHHHHHHHHHHHHhhccCCcccCCCCCCCCEEEEEcCCcchhhhccccchHHHHH
Confidence 9999999998731 3577888888877765111211 13345899999999999999999999999999
Q ss_pred hhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhhh-cccCCCCCC
Q 043977 247 HDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQ-SSRDGGELS 325 (625)
Q Consensus 247 ~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~s 325 (625)
||+|||++|.|+++.+.. ++..++|++.|+++|+||.++||+||++|++.|.+++++|+++++. .++ +...++..+
T Consensus 247 ~dll~I~~n~v~~~~~~~-~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~s 323 (650)
T 2xhe_A 247 YDLLNIENDIYSYSTVDA-GGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARR--LQGLRDSQQGEGG 323 (650)
T ss_dssp HHHSCCBTTEEEEEECCS-SCCSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHH--TTTCCCCCCSTTT
T ss_pred HHHhcCcCCEEEEEecCC-CCCccceEEeCCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhh--hcccccccccccc
Confidence 999999999999986422 2345568899999999999999999999999999999999987653 221 001124569
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCC--------hHHHHHHHhcCCCCCc
Q 043977 326 TRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAG--------AKDVINFLRMKQDVTP 397 (625)
Q Consensus 326 ~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~--------~~~~~~~l~~~~~~~~ 397 (625)
++||++||++||+|+++++++++|++||++|++.+++ +|.+++++||+|++|.+. .+.+.++|. +...+.
T Consensus 324 ~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~~ll~-~~~~~~ 401 (650)
T 2xhe_A 324 AGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVV-DRRVST 401 (650)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSCCBCCCHHHHHHHHHH-CTTSCH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHh-CCCCCH
Confidence 9999999999999999999999999999999999999 999999999999998753 135667776 467899
Q ss_pred hhHHHHHHHHHHhCCCCCChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCCCcccccccccccchhcccCCCCCc
Q 043977 398 ENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGEE 477 (625)
Q Consensus 398 ~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~ 477 (625)
.|||||+|||++++ +|+++++++++++.||++.+++.++.||+++|+...+...+ .+.+...+++ .+
T Consensus 402 ~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~---------~~~~~~~rk~---~~ 468 (650)
T 2xhe_A 402 EDKLRCLMLCVLAK-NGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRRG---------RKPKTMKRIE---RD 468 (650)
T ss_dssp HHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCGGGGHHHHGGGGGTCCCBGGGCC---------CCCCCCCCCC---CC
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccccc---------cccccccccc---cC
Confidence 99999999999998 58999899999999999999999999999999876543210 0111111122 22
Q ss_pred cccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCcccCCCCCCCCCC
Q 043977 478 ETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAKPQ 557 (625)
Q Consensus 478 ~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 557 (625)
.+|+||||+|+++|+||.+++++|+.+.||++.++.....+.....+.. +..+ ....++.+.++|+++.
T Consensus 469 ~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~s~~~~~w~~~~ 537 (650)
T 2xhe_A 469 MPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVE-------EDDD----GPATSARKRGNWAKNK 537 (650)
T ss_dssp CCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC--------------------------------------
T ss_pred CcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCccccccccccccc-------cccc----cccccccccccccccc
Confidence 3899999999999999999999999999999975432111100000000 0000 0011233346888754
Q ss_pred CCCCC----CCccchhhhhh-hhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCccccC
Q 043977 558 NSDDG----YSSDSILNHAV-ADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 558 ~~~~~----~~~~~~~~~~~-~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~fl~ 625 (625)
.+... .++++..+... ++...+++++||||||||||+|+|++|+|+++.+++||||||+|+||++||+
T Consensus 538 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~~~~viigsT~Iln~~~fl~ 610 (650)
T 2xhe_A 538 GNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFVE 610 (650)
T ss_dssp ------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTTSSSEEEEEEEEECCHHHHHH
T ss_pred cccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcCCCEEEEeeCCcCCHHHHHH
Confidence 32111 00000000000 0112457889999999999999999999999999999999999999999974
No 4
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=5e-101 Score=869.03 Aligned_cols=548 Identities=31% Similarity=0.591 Sum_probs=446.9
Q ss_pred CCCCCCCCCCC-cEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcC-C
Q 043977 1 MLESTNADSKS-WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSG-R 78 (625)
Q Consensus 1 ~~~~~~~~~~~-~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~-~ 78 (625)
|+++|+ +++ |||||+|+.+.+|||++|+++||+++||++|+.|++.|+|+|+++|||||+||.+||++|++||+. .
T Consensus 30 ~i~~v~--~~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~~~aIyfv~Pt~eni~~i~~dl~~~~ 107 (606)
T 3c98_A 30 VIKKVK--KKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPP 107 (606)
T ss_dssp THHHHC--BTTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTTSCEEEEECCCHHHHHHHHHTTTSGG
T ss_pred HHhccC--CCCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcCCHHHHHHHHHHhcchh
Confidence 455664 344 999999999999999999999999999999999999999999999999999999999999999974 1
Q ss_pred CCCcceEEEEecCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHH
Q 043977 79 EPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTM 158 (625)
Q Consensus 79 ~~~y~~~~i~f~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~i 158 (625)
.++|++|||+|++.+|+.+++.||+. +..+.|++|.|+++||+|+|+|+|||++|++|..+|.++. .......++++
T Consensus 108 ~~~Y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~~~~--~~~~~~~l~~i 184 (606)
T 3c98_A 108 TAKYRAAHVFFTDSCPDALFNELVKS-RAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK--AQMKNPILERL 184 (606)
T ss_dssp GCCBSCEEEEESSCCCHHHHHHHHTS-GGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHHCGGG--TTSCHHHHHHH
T ss_pred hcccCeEEEEECCCCCHHHHHHHHhc-CcccccCeEEEEecchhhcCCcEEEecCCchHHHhcCCcc--cccchHHHHHH
Confidence 35899999999999999999999975 5678899999999999999999999999999999997542 12335789999
Q ss_pred HHHHHHHHHHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhcc-CCCC---CCCCCeeEEEecCCCCccc
Q 043977 159 AKRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKS-IPNF---PQTETCELLILDRSVDQIA 234 (625)
Q Consensus 159 a~~L~sl~~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~-~~~~---~~~~~~~LiIlDR~~DliT 234 (625)
|++|+++|.++|.+|.|||+|+. ..|+.+|+.+++.++.+.+ ++.+ +..++++|||+||++||+|
T Consensus 185 a~~L~sv~~~lg~~P~Ir~~~~~-----------~~~~~la~~~~~~l~~~~~~~~~~~~~~~~~~~~LlIlDR~~D~vT 253 (606)
T 3c98_A 185 AEQIATLCATLKEYPAVRYRGEY-----------KDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSS 253 (606)
T ss_dssp HHHHHHHHHHHTCCCEEEECTTS-----------HHHHHHHHHHHHHHHHHHHHCTTTTCSTTTTSCEEEEEEGGGCSST
T ss_pred HHHHHHHHHHcCCCCeEEEecCc-----------hHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCceEEEeeccccccc
Confidence 99999999999999999998873 3567788999998887765 3322 3355899999999999999
Q ss_pred cccchhchhHHhhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHh
Q 043977 235 PVIHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQI 314 (625)
Q Consensus 235 PLlh~~TYqaLi~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~ 314 (625)
||+||||||||+||+|||++|.|+++.+. .+..+.+++.|+++|+||.++||+||++|++.|.+++++|+++++.
T Consensus 254 PLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~--- 328 (606)
T 3c98_A 254 PVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRM--- 328 (606)
T ss_dssp TTSCCCBHHHHHHHHSCCBTTEEEEEEES--SSSEEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhcccccHHHHHHHHhCccCCeEEEecCC--CCCccceEeecCCCchhHHHHhccCHHHHHHHHHHHHHHHHHHHhh---
Confidence 99999999999999999999999997632 2234568899999999999999999999999999999999875432
Q ss_pred hhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCC--------hHHHH
Q 043977 315 QQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAG--------AKDVI 386 (625)
Q Consensus 315 ~~~~~~~~~~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~--------~~~~~ 386 (625)
..++..+++||++||++||+++++++.+++|++|+++|++.++ ++|++++++||+|++|.+. .+.++
T Consensus 329 ----~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~~d~~~~~~~~~~~~i~ 403 (606)
T 3c98_A 329 ----NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIV 403 (606)
T ss_dssp -----------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHSBCTTSCBCSCTHHHHH
T ss_pred ----hcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 1123457889999999999999999999999999999999995 5899999999999987542 24677
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCCCcccccccccccc
Q 043977 387 NFLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTK 466 (625)
Q Consensus 387 ~~l~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~f~~~k~~ 466 (625)
++|. +..++.+|||||+|||++++ +|++++++.++++..|++..+..++.||..+|+...+...... ..
T Consensus 404 ~ll~-~~~~~~~dkLRL~lLy~l~~-~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~lg~~~~~~~~~~~---------~~ 472 (606)
T 3c98_A 404 PILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRR---------RS 472 (606)
T ss_dssp HHHT-CTTSCHHHHHHHHHHHHHHT-TSBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCTTTC---------CC
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccccccc---------cc
Confidence 7887 47889999999999999998 6899988999999999999999999999999986544321100 01
Q ss_pred hhcccCCCCCccccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCcc
Q 043977 467 QAARKERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVR 546 (625)
Q Consensus 467 ~~~~~~~~~~~~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 546 (625)
....+. .+.+.+|+||||+|++++++|.+++++|+...||++........+ ....
T Consensus 473 ~~~~~~-~~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~------------------------~~~~ 527 (606)
T 3c98_A 473 KPERKE-RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS------------------------TTAV 527 (606)
T ss_dssp CCCCCC-CCCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC----------------------------------
T ss_pred chhhcc-CCcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCccccc------------------------cccc
Confidence 111111 356788999999999999999999999999999999755421100 0111
Q ss_pred cCCCCCCCCCCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhc-CCeEEEccccccCCccccC
Q 043977 547 SRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKL-RREVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~-~~~iiigsT~Ii~~~~fl~ 625 (625)
+.+.+.|.++..+.. ...++++||||||||||+|+|++|+|+++. +++||||||+|+||++||+
T Consensus 528 ~~~~~~~~~~~~~~~---------------~~~~~~iIVFvvGGvTy~E~~~l~~ls~~~~~~~viiGsT~Iln~~~fl~ 592 (606)
T 3c98_A 528 SARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLD 592 (606)
T ss_dssp -------------------------------CCCSEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHH
T ss_pred ccccCCccccCCCCC---------------CCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCcEEEEEeCCeeCHHHHHH
Confidence 223356776443221 235789999999999999999999999876 4799999999999999974
No 5
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=6.2e-101 Score=866.41 Aligned_cols=545 Identities=29% Similarity=0.548 Sum_probs=441.5
Q ss_pred CCcEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcC-CCCCcceEEEE
Q 043977 10 KSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSG-REPLYKKAYVF 88 (625)
Q Consensus 10 ~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~-~~~~y~~~~i~ 88 (625)
.+|||||+|+.+.++||++|++++|+++||++|+.|+..|+|+|+++|||||+|+.+||++|++||.. ..|+|+.|||+
T Consensus 23 ~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy~v~Pt~~ni~~i~~d~~~~~~~~y~~~~i~ 102 (591)
T 1epu_A 23 AEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIF 102 (591)
T ss_dssp SCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCHHHHHHHHHHTSSTTSCSEEEEEEE
T ss_pred CCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCCCCeEEEecCCHHHHHHHHHHHhhcccccCCeEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999974 24899999999
Q ss_pred ecCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHHHHHHHHHHH
Q 043977 89 FSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFAS 168 (625)
Q Consensus 89 f~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~~~ 168 (625)
|++.+|+.+++.||+. ++.+.|.++.|+++||+|+|+|+|||++|++|..+|.++. .......++.+|++|++||.+
T Consensus 103 F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~~--~~~~~~~l~~ia~~L~sl~~~ 179 (591)
T 1epu_A 103 FTEACPEELFKELCKS-TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSR--AQGGIPNKERCAEQIATLCAT 179 (591)
T ss_dssp ESSCCCHHHHHHHHHS-TTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGG--STTCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHhC-chHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCcc--hhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999976 4788888999999999999999999999999999998431 123468899999999999999
Q ss_pred cCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhcc-CCCCC---CCCCeeEEEecCCCCccccccchhchhH
Q 043977 169 MKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKS-IPNFP---QTETCELLILDRSVDQIAPVIHEWTYDA 244 (625)
Q Consensus 169 lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~-~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqa 244 (625)
+|.+|.|||+|+. ..|+++|+.+++.|.++.. ++.++ ..++++|||+||++|++|||+|||||||
T Consensus 180 lg~~P~Ir~~~~~-----------~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqa 248 (591)
T 1epu_A 180 LGEYPSVRYRSDF-----------DENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQA 248 (591)
T ss_dssp HTCCCEEEECTTS-----------THHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCSSGGGSCCCBHHH
T ss_pred cCCCCeEEecCCC-----------cHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEECCCccchhhhhhhhhHHH
Confidence 9999999999873 2578899999988887755 33442 2358899999999999999999999999
Q ss_pred HhhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCCCC
Q 043977 245 MCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGGEL 324 (625)
Q Consensus 245 Li~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (625)
|+||+|||++|+|+++.. .++..+++++.|+++|+||.++||+||++|++.|.+++++|+++++..+. ++..
T Consensus 249 li~dll~I~~n~v~~~~~--~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~------~~~~ 320 (591)
T 1epu_A 249 MAYDLLPIENDVYKYVNT--GGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTA------ADKA 320 (591)
T ss_dssp HHHHHSCCBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHhCcCCCEEEEEec--CCCCccceEEeCCCCChHHHHHhccCHHHHHHHHHHHHHHHHHhcccccc------cccc
Confidence 999999999999998753 22234568899999999999999999999999999999999886542110 1345
Q ss_pred CHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCC--------hHHHHHHHhcCCCCC
Q 043977 325 STRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAG--------AKDVINFLRMKQDVT 396 (625)
Q Consensus 325 s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~--------~~~~~~~l~~~~~~~ 396 (625)
+++||++||++||+++++++.+++|++||++|++.+++ +|.+++++||++++|.+. .+.+.++|. +...+
T Consensus 321 s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~k~~~~~i~~~l~-~~~~~ 398 (591)
T 1epu_A 321 GIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILL-DQKIS 398 (591)
T ss_dssp CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBCTTSCBCCCCHHHHHHHHT-CTTSC
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccccchHHHHHHHHHh-CCCCC
Confidence 78999999999999999999999999999999999999 999999999999998652 125677776 46789
Q ss_pred chhHHHHHHHHHHhCCCCCChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCC-CcccccccccccchhcccCCCC
Q 043977 397 PENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSS-TDFSLKFDGQKTKQAARKERPG 475 (625)
Q Consensus 397 ~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~-~~~~~~f~~~k~~~~~~~~~~~ 475 (625)
.+|||||+|||++++ +|+++++++++++.||++.+++.++.||+++|+...+...+ ..|...+ .+ .++. .+
T Consensus 399 ~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~~~~~~~~~~--~~----~~~~-~~ 470 (591)
T 1epu_A 399 AYDKIRIILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYH--TH----NRKE-RQ 470 (591)
T ss_dssp HHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTTSCCCCCTTS--GG----GSCC-CC
T ss_pred HHHHHHHHHHHHHHc-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcCCccccCCcccccccccc--cc----cccc-CC
Confidence 999999999999998 58999889999999999989999999999999876544211 1111100 00 1111 36
Q ss_pred CccccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCcccCCCCCCCC
Q 043977 476 EEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAK 555 (625)
Q Consensus 476 ~~~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 555 (625)
++.+|+||||+|+++++||.+++++++.+.||+++++.+.. +. ...++.+.+.|++
T Consensus 471 ~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~-~~-----------------------~~~~s~~~~~~~~ 526 (591)
T 1epu_A 471 ADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRP-SC-----------------------QQPVSVRYGHWHK 526 (591)
T ss_dssp SCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC------------------------------------------
T ss_pred CCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCcc-cc-----------------------CCccccccCcccC
Confidence 67899999999999999999999999999999997543210 00 0011223357876
Q ss_pred CCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHh--hcCCeEEEccccccCCccccC
Q 043977 556 PQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTT--KLRREVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~--~~~~~iiigsT~Ii~~~~fl~ 625 (625)
+.++.. ...++++||||||||||+|+|++|+|++ ..+++|+||||+|+||++|++
T Consensus 527 ~~~~~~---------------~~~~~~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~viigsT~i~n~~~fl~ 583 (591)
T 1epu_A 527 DKGQAS---------------YKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLR 583 (591)
T ss_dssp ----------------------CCCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCHHHHHH
T ss_pred CCCccc---------------cCCCCeEEEEEECCCCHHHHHHHHHHHhhccCCCeEEEecCCcCCHHHHHH
Confidence 433211 1246779999999999999999999998 568999999999999999973
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=3.6e-90 Score=785.72 Aligned_cols=542 Identities=18% Similarity=0.319 Sum_probs=405.9
Q ss_pred CCCcEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcCCCCCcceEEEE
Q 043977 9 SKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVF 88 (625)
Q Consensus 9 ~~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~~~~~y~~~~i~ 88 (625)
.++|||||+|+.+.++||++|++++|+++||++|+.|+..|+|+|+++|||||+|+.+||++|++||+. |+|+.|||+
T Consensus 55 ~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~--~~Y~~~~i~ 132 (671)
T 1mqs_A 55 EIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDIIVNDLKS--DKYSEFYIN 132 (671)
T ss_dssp CCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSCCCCEEEEEEEEEECSCHHHHHHHHHHHHH--TCEEEEEEE
T ss_pred CCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCCCCCCCCceEEEEeCCCHHHHHHHHHHhhh--cccceEEEE
Confidence 456999999999999999999999999999999999999999999999999999999999999999974 789999999
Q ss_pred ecCCCCHHHHHHHhhC---CCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHHHHHHHH
Q 043977 89 FSTPIPKELVNHIKSD---TSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATV 165 (625)
Q Consensus 89 f~~~~~~~~~e~la~~---~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl 165 (625)
|++.+|+.++++||+. .++.+.|++|.|+++||+|+|+|+|||++|++|..+|.++.+ +......++.+|++|++|
T Consensus 133 F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfiple~dlfsL~~p~s~~~l~~~~~~-d~~~~~~l~~ia~~L~sl 211 (671)
T 1mqs_A 133 FTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLNDPKTT-EEEITGLCANIADGLFNT 211 (671)
T ss_dssp ESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECSTTEEECCCCSHHHHHHCSSSC-TTHHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeeccCCEEEecCchHHHHhcCCCcc-chhHHHHHHHHHHHHHHH
Confidence 9999999999999873 578899989999999999999999999999999999985422 223347899999999999
Q ss_pred HHHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhcc---CCCC------CCCCCeeEEEecCCCCccccc
Q 043977 166 FASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKS---IPNF------PQTETCELLILDRSVDQIAPV 236 (625)
Q Consensus 166 ~~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~---~~~~------~~~~~~~LiIlDR~~DliTPL 236 (625)
|.++|.+|.|||..+. .|+.+|+.+...+..+.. +..| +...+++|||+||++|++|||
T Consensus 212 ~~~lg~~P~IRy~~g~------------~a~~va~~L~~~l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPL 279 (671)
T 1mqs_A 212 VLTINSIPIIRAAKGG------------PAEIIAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMF 279 (671)
T ss_dssp HHHHTCCCEEEECSSS------------HHHHHHHHHHHHHHHHHHTTCC------------CCCEEEEEEGGGCSHHHH
T ss_pred HHhcCCCCEEEeCCCC------------hHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCEEEEecCCccchhhh
Confidence 9999999999984331 345555555555544322 1122 224588999999999999999
Q ss_pred cchhchhHHhhhhccCCCCeEEEeecCCCC-------CCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHh
Q 043977 237 IHEWTYDAMCHDLLDMDGNKYVLEVPSKTG-------GQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKN 309 (625)
Q Consensus 237 lh~~TYqaLi~dl~~I~~~~v~~~~~~~~g-------~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~ 309 (625)
+||||||||+||+|||++|.|+++.....+ ...++|++.|+++|+||.++||+||++|++.|.+++++|++++
T Consensus 280 lhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~ 359 (671)
T 1mqs_A 280 SHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEA 359 (671)
T ss_dssp CCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhhccCCEEEEeccCCCccccccccccccceEEecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997532211 0134588999999999999999999999999999999999876
Q ss_pred HHHHhhh--ccc------CCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCC
Q 043977 310 KAAQIQQ--SSR------DGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAG 381 (625)
Q Consensus 310 ~~~~~~~--~~~------~~~~~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~ 381 (625)
+. +++ +.. .+...++++|++||++||+|+++++++++|++||++|++.+++++|.+++++||+|+ |...
T Consensus 360 ~~--~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~~~~ 436 (671)
T 1mqs_A 360 AE--ITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG-STKT 436 (671)
T ss_dssp HH--HHHHC--------------------CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCS-SHHH
T ss_pred HH--HhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh-cCch
Confidence 42 322 100 012457999999999999999999999999999999999999999999999999997 4333
Q ss_pred hHHHHHHHhcCCCCCchhHHHHHHHHHHhCCC-CCChHH---HHHHHHHhCCChhHHHHHHHHHhhccc---cc--CC--
Q 043977 382 AKDVINFLRMKQDVTPENKLRLLMIYASVYPE-KFEGDK---ASKLMQLARLSSEDMKIVNNMRLLAGS---LN--SK-- 450 (625)
Q Consensus 382 ~~~~~~~l~~~~~~~~~dklRLl~L~~l~~~~-gl~~~~---~~~llq~~g~~~~~~~~l~nL~~lg~~---~~--~~-- 450 (625)
.+++.++|.+....++.|||||+|||++++ + |+++++ +++.++.+|++...+..+.++..++.. .. ..
T Consensus 437 ~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~-~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~ 515 (671)
T 1mqs_A 437 RSRFLDILKDGKTNNLEDKLRSFIVLYLTS-TTGLPKDFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLE 515 (671)
T ss_dssp HHHHHHHTTSCCSTTHHHHHHHHHHHHHHC-SSCCCHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC-
T ss_pred HHHHHHHHhCcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccccccc
Confidence 457888887422359999999999999998 5 888776 355668899965555555555444321 11 00
Q ss_pred -C--C---CCc-ccccccccccchhcccCCCCCcccccccc-----ccHHHHHHHHHHHcC-----C--CCCCCCCcccC
Q 043977 451 -K--S---STD-FSLKFDGQKTKQAARKERPGEEETWALFK-----FYPIIEELIENLCKG-----E--LPKSDYPCMNH 511 (625)
Q Consensus 451 -~--~---~~~-~~~~f~~~k~~~~~~~~~~~~~~~y~~s~-----y~Pl~~~lie~~~~~-----~--l~~~~~p~i~~ 511 (625)
. . .+. |+..+. +-..+.+.... .......++ +.|.++++++.++++ + ++.++||++++
T Consensus 516 ~~~~~~~~~~dl~~~~~~-r~~~~~~~~g~--~~~~~~v~n~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p 592 (671)
T 1mqs_A 516 DGSDSAFKPSNLTLSGIY-GLTEGKLQGGV--GSLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDP 592 (671)
T ss_dssp -----------------C-HHHHHTTTSSC--SSSHHHHHHTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECT
T ss_pred ccccccccccccccccHH-HHHHHHhccch--hhHHHhHHhhCCCcccchHHHHHHHHHhccccccccCCCccCceeeCC
Confidence 0 0 001 221110 00001111000 011111233 445688999999998 3 56788999863
Q ss_pred CCCccccccccccccccCCCCCCCCCccccCCCcccCCCCCCCCCCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCC
Q 043977 512 PSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGA 591 (625)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGv 591 (625)
.... |. .+.... ..+++++|||||||+
T Consensus 593 ~~~~--~~-----------------------~~~~~~----------------------------~~~~~~viVFvVGG~ 619 (671)
T 1mqs_A 593 KITR--GS-----------------------HTRKPK----------------------------RQSYNKSLVFVVGGG 619 (671)
T ss_dssp TSSS--CS-----------------------SSCCCC----------------------------CCCCSEEEEEEETCB
T ss_pred CCcC--CC-----------------------CCCCcc----------------------------cCCCCeEEEEEECCc
Confidence 2110 00 000000 114689999999999
Q ss_pred CHHHHHHHHHHHhhc---CCeEEEccccccCCccccC
Q 043977 592 TRSELRACYKLTTKL---RREVVLGSTSFNDPPEYIS 625 (625)
Q Consensus 592 Ty~Ei~al~~L~~~~---~~~iiigsT~Ii~~~~fl~ 625 (625)
||+|++++|+|+++. +++|+||||+|+||++||+
T Consensus 620 Ty~E~~~l~~l~~~~~~~~~~viiGsT~I~n~~~Fl~ 656 (671)
T 1mqs_A 620 NYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLN 656 (671)
T ss_dssp CHHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHH
T ss_pred cHHHHHHHHHHHhhccCCCceEEEeeccccCHHHHHH
Confidence 999999999999883 7999999999999999973
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.93 E-value=6.4e-27 Score=214.31 Aligned_cols=110 Identities=25% Similarity=0.509 Sum_probs=101.9
Q ss_pred CCCcEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcCCCCCcceEEEE
Q 043977 9 SKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVF 88 (625)
Q Consensus 9 ~~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~~~~~y~~~~i~ 88 (625)
.++|||||+|+.++++||++|+++||+++||++++.|+++|+|+|+++|||||+||.+||++|++||++ |+|++|||+
T Consensus 47 ~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~~~aIYfv~Pt~enI~~i~~D~~~--~~Y~~y~i~ 124 (159)
T 1y9j_A 47 EPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAVYFVMPTEENIDRLCQDLRN--QLYESYYLN 124 (159)
T ss_dssp CCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTTSCCEEEECCCHHHHHHHHHHHHH--TCBSEEEEE
T ss_pred CCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCCCCEEEEecCCHHHHHHHHHHhhh--cccCeEEEE
Confidence 356999999999999999999999999999999999999999999999999999999999999999974 799999999
Q ss_pred ecCCCCHHHHHHHhh---CCCcccccceeeEEecc
Q 043977 89 FSTPIPKELVNHIKS---DTSVLPRIGALREMNLE 120 (625)
Q Consensus 89 f~~~~~~~~~e~la~---~~~~~~~i~~i~e~~~d 120 (625)
|++.+|+.+++.||+ +.+....|+++.|+++|
T Consensus 125 Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 125 FISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp ESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred EcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 999999999999996 24667888888887764
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.28 E-value=47 Score=21.67 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 043977 324 LSTRDLQKIVQALPQYSEQVDKLSLHVEIAGK 355 (625)
Q Consensus 324 ~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~ 355 (625)
.++.++++++..|.+-..+.+.+.-|+..+..
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 37889999999988888888888888876643
No 9
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=19.61 E-value=73 Score=30.16 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCc
Q 043977 582 RIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPP 621 (625)
Q Consensus 582 ~iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~ 621 (625)
.+.|.+-|||+-.-+..+.+. |.+++|.++.|...+
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~a----GAd~~V~GsaIf~~~ 208 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISASH----GANIIVAGTSIFNAE 208 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHHH----TCCEEEESHHHHTCS
T ss_pred CCeEEEECCCCHHHHHHHHHc----CCCEEEEeHHHhCCC
Confidence 567899999998876666543 899999999998754
No 10
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=15.32 E-value=65 Score=30.27 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCcc
Q 043977 582 RIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPE 622 (625)
Q Consensus 582 ~iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~ 622 (625)
.+-|++.|||+-.-+..+..- |.++++.++.|+..++
T Consensus 173 ~~pi~v~GGI~~~ni~~~~~a----GaD~vvvGsai~~~~d 209 (228)
T 1h1y_A 173 SLDIEVDGGLGPSTIDVAASA----GANCIVAGSSIFGAAE 209 (228)
T ss_dssp TSEEEEESSCSTTTHHHHHHH----TCCEEEESHHHHTSSC
T ss_pred CCCEEEECCcCHHHHHHHHHc----CCCEEEECHHHHCCCC
Confidence 446899999998655444332 8999999999987643
Done!