BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043978
(683 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 130/550 (23%), Positives = 220/550 (40%), Gaps = 97/550 (17%)
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCN 181
N S PF L S + LD+SG ++ G+F I L++L + N G +P
Sbjct: 208 NFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPLP 264
Query: 182 WSSPLRELDLSLSDFSGEIP-YSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
S L+ L L+ + F+GEIP + G L +D++ +F G++P G+ S + +
Sbjct: 265 LKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 241 SNHLTGQLPHH-VSGLLYLTNLDLFGNSLQGKVPSWLFTL-PSLVSVNLAWNKLTGPI-- 296
SN+ +G+LP + + L LDL N G++P L L SL++++L+ N +GPI
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 297 DGFQSP-NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFD-QFSKLKXXXXXXXXXXXXXXX 354
+ Q+P N+L+E++L+ N G IP +L + F+ L
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT------------- 430
Query: 355 XXXXXIDIKYSLPSLLKLS----FSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDL 410
I SL SL KL + N E P L + + I +
Sbjct: 431 -------IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN---------- 473
Query: 411 DLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYI 467
DL+ + L N+ + L NN++ G I + + + +SNN SG IP +
Sbjct: 474 DLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 468 CXXXXXXXXXXXXXXXXGTIPPCL--------GNFTTQLITLHLKNNSLE---------- 509
GTIP + NF +++KN+ ++
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 510 ---------------------------GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK 542
GH TF+N ++ D++ N G +P+ +
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 543 CVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLCKSITTFSFQALRIIDLS 602
L ++N+G+N I+ + P SN+ G + ++++ + L IDLS
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM--LTEIDLS 709
Query: 603 RNEFKDFLPR 612
N +P
Sbjct: 710 NNNLSGPIPE 719
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 172/411 (41%), Gaps = 42/411 (10%)
Query: 141 LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEI 200
L +SG +I G+ + NL L + N TG +P S L+ LD+S + SG+
Sbjct: 180 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDF 236
Query: 201 PYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLL-YLT 259
+I L+ ++I+ F+G IP L + A N TG++P +SG LT
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 260 NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQSPNSLEEVHLEKNQIHG 317
LDL GN G VP + + L S+ L+ N +G P+D L+ + L N+ G
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 318 TIPSSLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXXXXXXIDIKYSLPSLLKLSFSNC 377
+P SL L ++ S +S P L L +
Sbjct: 355 ELPESLTNLSASLLTLDLSS------------------------NNFSGPILPNLCQNPK 390
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLR 434
N + +L+N+ G+I S L+ L LS N+L+ +L +R L L
Sbjct: 391 NTLQ-ELYLQNN-GFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 435 NNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICXXXXXXXXXXXXXXXXGTIPPCL 491
N ++G I L+ + E ++ N L+G+IP + G IP +
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 492 GNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK 542
G L L L NNS G+I + ++ DLN N F G++P ++ K
Sbjct: 508 GRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 131/509 (25%), Positives = 206/509 (40%), Gaps = 95/509 (18%)
Query: 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVL 96
L L+L+ N+F G+ + P FG L L S +NF G +P + L K+ L +VL
Sbjct: 293 LTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFSGELP--MDTLLKMRGL----KVL 345
Query: 97 TIEQRTFDXXXXXXXXXXXXXXXXTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQI 156
+ F P SL NLS+++ LDLS G
Sbjct: 346 DLSFNEFSGEL--------------------PESLTNLSASLLTLDLSSNNFSGP----- 380
Query: 157 FLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDIT 216
+LPNL C N PK + L+EL L + F+G+IP ++ N L ++ ++
Sbjct: 381 -ILPNL-----CQN-------PK----NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 423
Query: 217 YCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV---------------------SGL 255
+ G+IP+S G+LSK ++ N L G++P + SGL
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 256 LYLTNLD---LFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLE 311
TNL+ L N L G++P W+ L +L + L+ N +G I SL + L
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 312 KNQIHGTIPSSLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXXXXXXIDIKYSLPSLLK 371
N +GTIP+++F+ G I + + + L +
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 372 LSFSN-CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT-----HIALHPW 425
LS N CN+ + +++G + S++ LD+S N L+ I P+
Sbjct: 604 LSTRNPCNI---------TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 426 KNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICXXXXXXXXXXXXXX 482
+ L+L +N I GSI + + +S+NKL G+IP +
Sbjct: 655 --LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 483 XXGTIPPCLGNFTTQLITLHLKNNSLEGH 511
G IP +G F T L N L G+
Sbjct: 713 LSGPIPE-MGQFETFPPAKFLNNPGLCGY 740
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 104/436 (23%), Positives = 170/436 (38%), Gaps = 35/436 (8%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILF---ASN 242
L LDLS + SG +G +L ++ + G+ + ++S+ + F +SN
Sbjct: 150 LEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 207
Query: 243 HLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSP 302
+ + +P + L +LD+ GN L G + T L +N++ N+ GPI
Sbjct: 208 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL- 265
Query: 303 NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXXXXXXIDI 362
SL+ + L +N+ G IP L C T+ S
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 363 KYS--LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDL-SNNFLTH 419
+S LP L V + SF + G + + + SL+ LDL SNNF
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDL-SF----NEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 420 IALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICXXXXXXXXXXX 479
I + +N + N +Q E++L NN +G+IPP +
Sbjct: 381 ILPNLCQNPK------NTLQ----------ELYL-QNNGFTGKIPPTLSNCSELVSLHLS 423
Query: 480 XXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS 539
GTIP LG+ ++L L L N LEG I +++ L+ N G +P
Sbjct: 424 FNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 540 LAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLCKSITTFSFQALRII 599
L+ C L +++ NN + P W +N F G + + ++L +
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG--DCRSLIWL 540
Query: 600 DLSRNEFKDFLPRRNF 615
DL+ N F +P F
Sbjct: 541 DLNTNLFNGTIPAAMF 556
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 130/550 (23%), Positives = 220/550 (40%), Gaps = 97/550 (17%)
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCN 181
N S PF L S + LD+SG ++ G+F I L++L + N G +P
Sbjct: 211 NFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPLP 267
Query: 182 WSSPLRELDLSLSDFSGEIP-YSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
S L+ L L+ + F+GEIP + G L +D++ +F G++P G+ S + +
Sbjct: 268 LKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 241 SNHLTGQLPHH-VSGLLYLTNLDLFGNSLQGKVPSWLFTL-PSLVSVNLAWNKLTGPI-- 296
SN+ +G+LP + + L LDL N G++P L L SL++++L+ N +GPI
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 297 DGFQSP-NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFD-QFSKLKXXXXXXXXXXXXXXX 354
+ Q+P N+L+E++L+ N G IP +L + F+ L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT------------- 433
Query: 355 XXXXXIDIKYSLPSLLKLS----FSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDL 410
I SL SL KL + N E P L + + I +
Sbjct: 434 -------IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN---------- 476
Query: 411 DLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYI 467
DL+ + L N+ + L NN++ G I + + + +SNN SG IP +
Sbjct: 477 DLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 468 CXXXXXXXXXXXXXXXXGTIPPCL--------GNFTTQLITLHLKNNSLE---------- 509
GTIP + NF +++KN+ ++
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 510 ---------------------------GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK 542
GH TF+N ++ D++ N G +P+ +
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 543 CVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLCKSITTFSFQALRIIDLS 602
L ++N+G+N I+ + P SN+ G + ++++ + L IDLS
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM--LTEIDLS 712
Query: 603 RNEFKDFLPR 612
N +P
Sbjct: 713 NNNLSGPIPE 722
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 172/411 (41%), Gaps = 42/411 (10%)
Query: 141 LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEI 200
L +SG +I G+ + NL L + N TG +P S L+ LD+S + SG+
Sbjct: 183 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDF 239
Query: 201 PYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLL-YLT 259
+I L+ ++I+ F+G IP L + A N TG++P +SG LT
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 260 NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQSPNSLEEVHLEKNQIHG 317
LDL GN G VP + + L S+ L+ N +G P+D L+ + L N+ G
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 318 TIPSSLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXXXXXXIDIKYSLPSLLKLSFSNC 377
+P SL L ++ S +S P L L +
Sbjct: 358 ELPESLTNLSASLLTLDLSS------------------------NNFSGPILPNLCQNPK 393
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLR 434
N + +L+N+ G+I S L+ L LS N+L+ +L +R L L
Sbjct: 394 NTLQ-ELYLQNN-GFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 435 NNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICXXXXXXXXXXXXXXXXGTIPPCL 491
N ++G I L+ + E ++ N L+G+IP + G IP +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 492 GNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK 542
G L L L NNS G+I + ++ DLN N F G++P ++ K
Sbjct: 511 GRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 131/509 (25%), Positives = 206/509 (40%), Gaps = 95/509 (18%)
Query: 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVL 96
L L+L+ N+F G+ + P FG L L S +NF G +P + L K+ L +VL
Sbjct: 296 LTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFSGELP--MDTLLKMRGL----KVL 348
Query: 97 TIEQRTFDXXXXXXXXXXXXXXXXTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQI 156
+ F P SL NLS+++ LDLS G
Sbjct: 349 DLSFNEFSGEL--------------------PESLTNLSASLLTLDLSSNNFSGP----- 383
Query: 157 FLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDIT 216
+LPNL C N PK + L+EL L + F+G+IP ++ N L ++ ++
Sbjct: 384 -ILPNL-----CQN-------PK----NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 217 YCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV---------------------SGL 255
+ G+IP+S G+LSK ++ N L G++P + SGL
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 256 LYLTNLD---LFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLE 311
TNL+ L N L G++P W+ L +L + L+ N +G I SL + L
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 312 KNQIHGTIPSSLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXXXXXXIDIKYSLPSLLK 371
N +GTIP+++F+ G I + + + L +
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 372 LSFSN-CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT-----HIALHPW 425
LS N CN+ + +++G + S++ LD+S N L+ I P+
Sbjct: 607 LSTRNPCNI---------TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 426 KNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICXXXXXXXXXXXXXX 482
+ L+L +N I GSI + + +S+NKL G+IP +
Sbjct: 658 --LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 483 XXGTIPPCLGNFTTQLITLHLKNNSLEGH 511
G IP +G F T L N L G+
Sbjct: 716 LSGPIPE-MGQFETFPPAKFLNNPGLCGY 743
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 104/436 (23%), Positives = 170/436 (38%), Gaps = 35/436 (8%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILF---ASN 242
L LDLS + SG +G +L ++ + G+ + ++S+ + F +SN
Sbjct: 153 LEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 210
Query: 243 HLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSP 302
+ + +P + L +LD+ GN L G + T L +N++ N+ GPI
Sbjct: 211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL- 268
Query: 303 NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXXXXXXIDI 362
SL+ + L +N+ G IP L C T+ S
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 363 KYS--LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDL-SNNFLTH 419
+S LP L V + SF + G + + + SL+ LDL SNNF
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDL-SF----NEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 420 IALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICXXXXXXXXXXX 479
I + +N + N +Q E++L NN +G+IPP +
Sbjct: 384 ILPNLCQNPK------NTLQ----------ELYL-QNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 480 XXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS 539
GTIP LG+ ++L L L N LEG I +++ L+ N G +P
Sbjct: 427 FNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 540 LAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLCKSITTFSFQALRII 599
L+ C L +++ NN + P W +N F G + + ++L +
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG--DCRSLIWL 543
Query: 600 DLSRNEFKDFLPRRNF 615
DL+ N F +P F
Sbjct: 544 DLNTNLFNGTIPAAMF 559
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 29/217 (13%)
Query: 138 MTDLDLSGTRIQGNFP--DQIFLLPNLRVLYLCGNIHLTGYLPKCNWS-SPLRELDLSLS 194
+ +LDLSG + +P + LP L LY+ G +L G +P + L L ++ +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 195 DFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSG 254
+ SG IP + + L T+D +Y G++P S +L I F N ++G +P
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 255 LLYL-TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLEK 312
L T++ + N L GK+P L +L V+L+ N L G F S + +++HL K
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 313 N-----------------------QIHGTIPSSLFQL 326
N +I+GT+P L QL
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 117/286 (40%), Gaps = 46/286 (16%)
Query: 19 SWLRGTIDDNSTLFRLSHLQ--SLNLAFNNFLGSRISPEFGRLKELTYLN----PSFSNF 72
+WL D ++ +R+++L LNL + P L L YLN +N
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLP-------KPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 73 GGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDXXXXXXXXXXXXXXXXTNLSLIKPFSLL 132
G +P I+ L++L +L ++ TN+S P L
Sbjct: 90 VGPIPPAIAKLTQLHYLYIT---------------------------HTNVSGAIP-DFL 121
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC--NWSSPLRELD 190
+ T+ LD S + G P I LPNL + GN ++G +P ++S +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMT 180
Query: 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPH 250
+S + +G+IP + NL L VD++ G G+ +I A N L L
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238
Query: 251 HVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI 296
V L LDL N + G +P L L L S+N+++N L G I
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 89/238 (37%), Gaps = 28/238 (11%)
Query: 29 STLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTH 88
S+L L +L L + N L I P +L +L YL + +N G +P +S + L
Sbjct: 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 89 LGLSCRVLTIEQRTFDXXXXXXXXXXXXXXXXTNLSLIKPFSLLNLSSTMTDLDLSGTRI 148
L S L+ T +S P S + S T + +S R+
Sbjct: 130 LDFSYNALS---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 149 QGNFPDQIFLLPNLRVLYLCGN------------------IHLTGY-----LPKCNWSSP 185
G P L NL + L N IHL L K S
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNH 243
L LDL + G +P + L FL ++++++ N G IP GNL + +A+N
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Query: 485 GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544
G IPP + T QL L++ + ++ G I D + + D + N G+LP S++
Sbjct: 91 GPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 545 KLEVVNVGNNMINDTFP-CWXXXXXXXXXXXXRSNRFYGPLCKSITTFSFQALRIIDLSR 603
L + N I+ P + NR G K TF+ L +DLSR
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG---KIPPTFANLNLAFVDLSR 206
Query: 604 NEFK 607
N +
Sbjct: 207 NMLE 210
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 4/158 (2%)
Query: 455 SNNKLSGQIPPYICXXXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHD 514
S N LSG +PP I G IP G+F+ ++ + N L G I
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 515 TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXX 574
TF N N+ DL+ N EG + +++ N +
Sbjct: 193 TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 575 XRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPR 612
R+NR YG L + +T F L +++S N +P+
Sbjct: 251 LRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIPQ 286
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 16/167 (9%)
Query: 405 KSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVF-------LV 454
K+L+ LD S N L+ ++ N+ + N+I G+I P S F +
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI---PDSYGSFSKLFTSMTI 181
Query: 455 SNNKLSGQIPPYICXXXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHD 514
S N+L+G+IPP + TQ I HL NSL +
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI--HLAKNSLAFDLGK 239
Query: 515 TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561
+ N+ DL N+ G+LP+ L + L +NV N + P
Sbjct: 240 VGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 186 LRELDLS----LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFAS 241
LR LDL LS S + NL +L ++ CN + IP T L K E+ +
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYL---NLAMCN-LREIPNLTP-LIKLDELDLSG 216
Query: 242 NHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLT-GPIDGFQ 300
NHL+ P GL++L L + + +Q + L SLV +NLA N LT P D F
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276
Query: 301 SPNSLEEVHLEKN 313
+ LE +HL N
Sbjct: 277 PLHHLERIHLHHN 289
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 74 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N+LT G ++G + +L+ + L++N ++ TIP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 188
Query: 321 SSLF 324
F
Sbjct: 189 KGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 74 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N+LT G ++G + +L+ + L++N ++ TIP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 188
Query: 321 SSLF 324
F
Sbjct: 189 KGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 74 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N+LT G ++G + +L+ + L++N ++ TIP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 188
Query: 321 SSLF 324
F
Sbjct: 189 KGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 74 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N+LT G ++G + +L+ + L++N ++ TIP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 188
Query: 321 SSLF 324
F
Sbjct: 189 KGFF 192
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 156 IFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDI 215
I LP L L L G L Y P +PL+ L L +P I L LE +D+
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 216 TYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHH 251
C + +P+ L A I+ HL QL H
Sbjct: 285 RGCVNLSRLPSLIAQLP-ANCIILVPPHLQAQLDQH 319
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 74 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N LT G ++G + +L+ + L++N ++ TIP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 188
Query: 321 SSLF 324
F
Sbjct: 189 KGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 75 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N LT G ++G + +L+ + L++N ++ TIP
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 189
Query: 321 SSLF 324
F
Sbjct: 190 KGFF 193
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 74 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N LT G ++G + +L+ + L++N ++ TIP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 188
Query: 321 SSLF 324
F
Sbjct: 189 KGFF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 74 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N LT G ++G + +L+ + L++N ++ TIP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 188
Query: 321 SSLF 324
F
Sbjct: 189 KGFF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 74 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N LT G ++G + +L+ + L++N ++ TIP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 188
Query: 321 SSLF 324
F
Sbjct: 189 KGFF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
G L L T+D+++ N + S+P L T + + N LT + GL L L L
Sbjct: 74 GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLT----GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
GN L+ P L P L ++LA N LT G ++G + +L+ + L++N ++ TIP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE---NLDTLLLQENSLY-TIP 188
Query: 321 SSLF 324
F
Sbjct: 189 KGFF 192
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC 93
++ L+ L+L+FN+F + EFG L +LT+L S + F L L + HL LSC
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL------DLLPVAHLHLSC 173
Query: 94 RVLTI 98
+L +
Sbjct: 174 ILLDL 178
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 218 CNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWL 276
C G TG ++ T + +N L LP+ V L LT L L GN LQ +P+ +
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGV 71
Query: 277 F-TLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQ 334
F L SL +NL+ N+L +G F L+E+ L NQ+ ++P + FD+
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGV--------FDK 122
Query: 335 FSKLK 339
++LK
Sbjct: 123 LTQLK 127
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556
L+ L LK N L G + FE AS+IQ L NK + + +L+ +N+ +N I
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 557 NDTFP 561
+ P
Sbjct: 115 SCVMP 119
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 395 RISKHDSKGWKSLIDLDLSNNFLTH-IALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFL 453
+IS D + L L+LS+N L + L +RTLDL NN +Q L+ PS E
Sbjct: 48 QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--LLVGPSIETLH 105
Query: 454 VSNNKLS 460
+NN +S
Sbjct: 106 AANNNIS 112
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
IDDN+ + L+HL LNL+ NFLGS S F L +L L+ S+++ L L
Sbjct: 314 IDDNA-FWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 85 KLTHLGLSCRVL 96
L L L L
Sbjct: 372 NLKELALDTNQL 383
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 395 RISKHDSKGWKSLIDLDLSNNFLTH-IALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFL 453
+IS D + L L+LS+N L + L +RTLDL NN +Q L+ PS E
Sbjct: 48 QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--LLVGPSIETLH 105
Query: 454 VSNNKLS 460
+NN +S
Sbjct: 106 AANNNIS 112
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 156 IFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLREL-DLSLSDFSGEIPYSIGNLLFLETVD 214
I LPN+R L L GN K + S L+EL +L+ +G S+ N +F + +
Sbjct: 59 IQYLPNVRYLALGGN--------KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110
Query: 215 ITYC----NFMGSIPTST-GNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSL 268
+ N + S+P L+ T + A N L LP V L LT LDL N L
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQL 169
Query: 269 QGKVPSWLF-TLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLEKNQIHGTIP 320
Q +P +F L L + L N+L DG F SL+ + L N T P
Sbjct: 170 QS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 463 IPPYICXXXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNI 522
+PP++ ++P + + T +L TL + NN+LE DTF+ +++
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 523 QSFDLNCNKF 532
Q+ L+ N+
Sbjct: 174 QNLQLSSNRL 183
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQ-LPHH 251
+S+FS + S+ NL++L DI++ + + LS + A N LP
Sbjct: 411 MSEFS--VFLSLRNLIYL---DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 252 VSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHL 310
+ L LT LDL L+ P+ +L SL +N+A N+L DG F SL+++ L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
Query: 311 EKNQIHGTIP 320
N + P
Sbjct: 526 HTNPWDCSCP 535
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 604 NEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTV-AMKGHDFQLYMLNLDQI 662
NE + +++ ++K DE T +M HA+YD +T A + D + L + I
Sbjct: 28 NEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELI 87
Query: 663 YIPN 666
+IP+
Sbjct: 88 WIPD 91
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 463 IPPYICXXXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNI 522
+PP++ ++P + + T +L TL + NN+LE DTF+ +++
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 523 QSFDLNCNKF 532
Q+ L+ N+
Sbjct: 168 QNLQLSSNRL 177
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 604 NEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTV-AMKGHDFQLYMLNLDQI 662
NE + +++ ++K DE T +M HA+YD +T A + D + L + I
Sbjct: 49 NEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELI 108
Query: 663 YIPN 666
+IP+
Sbjct: 109 WIPD 112
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 38 QSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVL 96
Q L+L N +++ P F L +LTYLN + + L L+KLTHL L L
Sbjct: 43 QVLHLYINQI--TKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
Query: 97 -TIEQRTFD 104
+I FD
Sbjct: 101 KSIPMGVFD 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,596,765
Number of Sequences: 62578
Number of extensions: 718489
Number of successful extensions: 1752
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 288
length of query: 683
length of database: 14,973,337
effective HSP length: 105
effective length of query: 578
effective length of database: 8,402,647
effective search space: 4856729966
effective search space used: 4856729966
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)