Query 043978
Match_columns 683
No_of_seqs 541 out of 4556
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-55 4.8E-60 512.6 36.4 529 6-605 68-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.4E-53 5.2E-58 495.5 35.4 527 36-630 70-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.9E-38 1.1E-42 309.8 7.1 357 211-626 81-446 (873)
4 KOG4194 Membrane glycoprotein 100.0 1E-37 2.2E-42 307.7 7.0 383 114-552 55-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.6E-40 3.5E-45 313.3 -15.6 267 34-316 44-310 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 4.2E-40 9.2E-45 310.6 -19.4 489 84-656 45-558 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.9E-36 4.2E-41 314.5 -8.1 502 65-629 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.3E-35 2.8E-40 308.4 -6.2 504 12-604 3-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.5E-32 3.3E-37 273.1 -6.2 182 446-636 196-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.4E-31 3E-36 266.3 -4.8 365 32-437 4-373 (1255)
11 PLN03210 Resistant to P. syrin 99.9 9.2E-22 2E-26 230.0 27.7 335 201-580 551-905 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.5E-26 227.9 28.6 336 6-377 531-879 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.2E-24 2.7E-29 206.1 -4.7 285 37-350 69-357 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 9.9E-21 2.2E-25 204.8 18.8 52 259-316 204-255 (788)
15 KOG4237 Extracellular matrix p 99.9 9.8E-24 2.1E-28 200.0 -4.7 277 5-292 65-358 (498)
16 PRK15387 E3 ubiquitin-protein 99.9 1.5E-20 3.2E-25 203.5 18.3 262 235-564 204-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.4E-19 5.2E-24 195.6 12.6 141 406-557 284-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1E-18 2.3E-23 190.6 13.5 249 303-607 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-18 3.6E-23 176.6 -1.0 130 40-170 3-147 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.6E-18 1E-22 173.3 -2.7 203 11-221 2-234 (319)
21 KOG0617 Ras suppressor protein 99.6 2E-16 4.4E-21 133.2 -1.6 159 445-612 31-190 (264)
22 KOG0617 Ras suppressor protein 99.6 4.3E-17 9.2E-22 137.3 -5.8 158 446-608 55-213 (264)
23 KOG0532 Leucine-rich repeat (L 99.3 9.1E-14 2E-18 139.0 -6.0 193 450-662 78-270 (722)
24 KOG3207 Beta-tubulin folding c 99.2 3.2E-12 6.9E-17 124.3 0.8 113 519-632 221-339 (505)
25 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.3E-16 109.5 4.4 124 497-626 20-147 (175)
26 PF14580 LRR_9: Leucine-rich r 99.1 9E-11 2E-15 104.5 7.1 79 497-575 65-147 (175)
27 KOG1909 Ran GTPase-activating 99.1 3.5E-12 7.6E-17 120.6 -2.1 226 30-269 25-283 (382)
28 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.4E-16 119.5 0.1 209 59-269 120-339 (505)
29 KOG1259 Nischarin, modulator o 99.1 2E-11 4.4E-16 112.7 0.8 198 402-608 211-413 (490)
30 KOG0532 Leucine-rich repeat (L 99.1 6.8E-12 1.5E-16 125.8 -3.5 171 366-557 74-247 (722)
31 COG4886 Leucine-rich repeat (L 99.1 4.2E-10 9.2E-15 118.0 9.5 86 471-561 209-294 (394)
32 COG4886 Leucine-rich repeat (L 99.1 3E-10 6.4E-15 119.1 8.1 176 405-611 116-294 (394)
33 KOG1909 Ran GTPase-activating 99.0 4.4E-12 9.5E-17 120.0 -5.5 37 520-556 270-310 (382)
34 KOG1259 Nischarin, modulator o 99.0 4.1E-11 8.8E-16 110.8 0.8 137 229-385 281-417 (490)
35 PLN03150 hypothetical protein; 98.9 1.8E-09 4E-14 118.3 9.1 107 473-580 420-527 (623)
36 PLN03150 hypothetical protein; 98.9 3.9E-09 8.4E-14 115.7 9.4 114 497-611 419-532 (623)
37 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.9E-14 79.6 3.9 59 521-579 2-60 (61)
38 KOG0531 Protein phosphatase 1, 98.9 1.5E-10 3.2E-15 121.4 -1.9 81 498-581 234-318 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.9 8E-10 1.7E-14 123.5 3.2 317 8-349 524-856 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 79.2 3.6 60 497-556 2-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.9 1.6E-09 3.5E-14 121.2 5.2 271 33-316 521-807 (889)
42 KOG0531 Protein phosphatase 1, 98.9 3.8E-10 8.3E-15 118.3 -0.5 200 403-611 116-322 (414)
43 KOG1859 Leucine-rich repeat pr 98.7 1.3E-09 2.8E-14 112.7 -2.5 126 497-631 165-291 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.5 1.3E-09 2.9E-14 100.9 -7.9 178 61-242 186-373 (419)
45 KOG2120 SCF ubiquitin ligase, 98.4 3.6E-09 7.8E-14 98.1 -8.0 182 35-220 185-375 (419)
46 KOG1859 Leucine-rich repeat pr 98.4 1.1E-08 2.4E-13 106.0 -5.5 180 421-611 104-295 (1096)
47 KOG2982 Uncharacterized conser 98.2 1.6E-07 3.5E-12 87.3 -1.0 39 231-269 70-110 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.2 1.5E-07 3.3E-12 86.3 -1.6 201 32-245 27-255 (388)
49 KOG1644 U2-associated snRNP A' 98.2 4.2E-06 9.1E-11 73.9 6.2 130 474-607 22-153 (233)
50 KOG4341 F-box protein containi 98.1 3.9E-08 8.4E-13 95.8 -7.2 36 279-314 400-437 (483)
51 KOG4341 F-box protein containi 98.1 3.2E-08 7E-13 96.3 -8.0 298 7-310 138-459 (483)
52 KOG2982 Uncharacterized conser 98.1 4.9E-07 1.1E-11 84.2 0.0 61 520-581 199-262 (418)
53 COG5238 RNA1 Ran GTPase-activa 98.1 1.1E-06 2.4E-11 80.8 2.0 233 403-635 28-319 (388)
54 KOG4579 Leucine-rich repeat (L 98.0 3.5E-07 7.6E-12 75.1 -3.2 87 468-557 50-136 (177)
55 KOG4579 Leucine-rich repeat (L 98.0 6.3E-07 1.4E-11 73.7 -2.5 59 472-533 78-136 (177)
56 PRK15386 type III secretion pr 97.9 4.4E-05 9.6E-10 76.9 9.5 32 520-554 156-187 (426)
57 KOG1644 U2-associated snRNP A' 97.9 2.3E-05 5.1E-10 69.3 6.0 102 450-554 45-150 (233)
58 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 53.2 3.3 34 546-580 3-36 (44)
59 PRK15386 type III secretion pr 97.8 5.7E-05 1.2E-09 76.2 7.9 133 446-605 51-188 (426)
60 PF12799 LRR_4: Leucine Rich r 97.8 3E-05 6.6E-10 51.5 3.4 38 520-558 1-38 (44)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.9E-05 4.2E-10 86.6 3.8 106 60-170 122-230 (699)
62 KOG3665 ZYG-1-like serine/thre 97.7 1.4E-05 3E-10 87.7 1.6 136 471-608 122-264 (699)
63 PF13306 LRR_5: Leucine rich r 97.6 0.00018 3.8E-09 62.0 7.4 117 496-621 12-128 (129)
64 PF13306 LRR_5: Leucine rich r 97.6 0.0002 4.3E-09 61.6 7.4 102 446-553 11-112 (129)
65 KOG2739 Leucine-rich acidic nu 97.3 0.00018 3.8E-09 66.8 3.2 80 497-580 44-128 (260)
66 KOG2739 Leucine-rich acidic nu 97.3 0.00011 2.4E-09 68.1 1.5 90 56-149 39-129 (260)
67 KOG2123 Uncharacterized conser 97.2 1.7E-05 3.7E-10 73.5 -4.8 82 497-582 20-102 (388)
68 KOG1947 Leucine rich repeat pr 96.6 0.00012 2.6E-09 79.2 -4.9 60 136-195 243-306 (482)
69 KOG1947 Leucine rich repeat pr 96.5 0.00031 6.6E-09 76.1 -2.5 238 58-315 186-439 (482)
70 KOG2123 Uncharacterized conser 95.2 0.0017 3.6E-08 60.7 -3.3 102 519-625 18-123 (388)
71 KOG4308 LRR-containing protein 94.6 0.00032 6.9E-09 73.8 -10.9 61 369-439 89-157 (478)
72 PF00560 LRR_1: Leucine Rich R 94.5 0.015 3.3E-07 31.9 0.7 12 546-557 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.0 0.027 5.9E-07 30.9 1.0 19 522-541 2-20 (22)
74 KOG4308 LRR-containing protein 93.7 0.0004 8.7E-09 73.0 -12.2 189 446-635 203-448 (478)
75 smart00369 LRR_TYP Leucine-ric 93.6 0.07 1.5E-06 30.6 2.3 23 593-616 1-23 (26)
76 smart00370 LRR Leucine-rich re 93.6 0.07 1.5E-06 30.6 2.3 23 593-616 1-23 (26)
77 PF13504 LRR_7: Leucine rich r 92.9 0.07 1.5E-06 27.1 1.4 14 368-381 2-15 (17)
78 KOG3864 Uncharacterized conser 92.0 0.015 3.2E-07 52.1 -3.0 83 449-531 103-187 (221)
79 KOG3864 Uncharacterized conser 91.3 0.055 1.2E-06 48.6 -0.2 34 521-554 102-135 (221)
80 smart00369 LRR_TYP Leucine-ric 89.0 0.36 7.8E-06 27.6 2.0 13 521-533 3-15 (26)
81 smart00370 LRR Leucine-rich re 89.0 0.36 7.8E-06 27.6 2.0 13 521-533 3-15 (26)
82 PF13516 LRR_6: Leucine Rich r 83.9 0.31 6.6E-06 27.3 -0.1 9 547-555 5-13 (24)
83 KOG0473 Leucine-rich repeat pr 82.7 0.045 9.7E-07 50.1 -5.9 85 468-556 39-123 (326)
84 KOG0473 Leucine-rich repeat pr 81.1 0.057 1.2E-06 49.4 -5.8 82 497-581 43-124 (326)
85 smart00365 LRR_SD22 Leucine-ri 71.8 3.5 7.5E-05 23.7 1.8 13 545-557 3-15 (26)
86 KOG4242 Predicted myosin-I-bin 68.5 16 0.00036 37.8 6.9 108 209-316 355-481 (553)
87 smart00364 LRR_BAC Leucine-ric 68.4 3.7 8E-05 23.5 1.4 18 367-384 2-19 (26)
88 smart00368 LRR_RI Leucine rich 65.1 5 0.00011 23.4 1.6 15 544-558 2-16 (28)
89 KOG4242 Predicted myosin-I-bin 62.1 48 0.001 34.6 8.7 106 136-243 165-279 (553)
90 KOG3763 mRNA export factor TAP 51.0 8.5 0.00019 40.6 1.6 37 339-377 218-254 (585)
91 smart00367 LRR_CC Leucine-rich 43.8 17 0.00037 20.6 1.5 11 160-170 2-12 (26)
92 KOG3763 mRNA export factor TAP 43.5 12 0.00025 39.7 1.2 67 541-609 215-285 (585)
93 TIGR00864 PCC polycystin catio 28.2 28 0.00061 44.6 1.3 45 574-620 1-45 (2740)
94 TIGR00864 PCC polycystin catio 22.3 52 0.0011 42.4 2.0 33 526-558 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-55 Score=512.58 Aligned_cols=529 Identities=31% Similarity=0.472 Sum_probs=306.8
Q ss_pred CCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcc-cCCCCCCCEEeCCCCCCCCCCCccCcCCC
Q 043978 6 TGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLS 84 (683)
Q Consensus 6 ~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~ 84 (683)
+++|+.|||++ +.+++.++. ++..+++|++|+|++|.+.+. +|.. +..+++|++|++++|.+.+.+|. +.++
T Consensus 68 ~~~v~~L~L~~--~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 68 SSRVVSIDLSG--KNISGKISS--AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CCcEEEEEecC--CCccccCCh--HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 34666666666 666655544 566666666666666666543 4443 33666666666666666655553 3456
Q ss_pred CCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcE
Q 043978 85 KLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRV 164 (683)
Q Consensus 85 ~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 164 (683)
+|++|++++|.+. ..+|..++++++|++|++++|.+.+..|..+.++ ++|++|++++|.+.+..|..+..+++|++
T Consensus 141 ~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 141 NLETLDLSNNMLS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCEEECcCCccc---ccCChHHhcCCCCCEEECccCcccccCChhhhhC-cCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 6666666666554 3444555666666666666666665556666666 66666666666666666666666666666
Q ss_pred EEccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc
Q 043978 165 LYLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNH 243 (683)
Q Consensus 165 L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 243 (683)
|++++| .+.+..+ .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 217 L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 666666 4443333 45555566666666665555555555566666666666665555555555555566666666555
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC-CCCCCCCCCcEEECCCCcCcccCCcc
Q 043978 244 LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEVHLEKNQIHGTIPSS 322 (683)
Q Consensus 244 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~ 322 (683)
+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.. ..+..+++|+.|++++|.+.+.+|.
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~- 374 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE- 374 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh-
Confidence 55555555555555666666655555555555555555555555555554322 2233445555555555555544443
Q ss_pred chhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCccc
Q 043978 323 LFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSK 402 (683)
Q Consensus 323 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~ 402 (683)
.+..+++|+.|++++|.+.. .+|..+ .
T Consensus 375 -----------~~~~~~~L~~L~l~~n~l~~---------------------------~~p~~~---------------~ 401 (968)
T PLN00113 375 -----------GLCSSGNLFKLILFSNSLEG---------------------------EIPKSL---------------G 401 (968)
T ss_pred -----------hHhCcCCCCEEECcCCEecc---------------------------cCCHHH---------------h
Confidence 23334445555555554321 122111 3
Q ss_pred CCCcCcEEECCCCcccccCCC---CCCCceEEeCCCCCCCccCCC---CCCCCcEEEccCCcccCCCCccccCCCCCCEE
Q 043978 403 GWKSLIDLDLSNNFLTHIALH---PWKNIRTLDLRNNKIQGSILV---PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYL 476 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 476 (683)
.+++|+.|++++|.+++..+. .++.|+.|++++|.+++..+. .+++|+.|++++|.+.+..|..+ ..++|+.|
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L 480 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENL 480 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEE
Confidence 444555555555554433221 334455555555554443221 34555666666666655555544 34667777
Q ss_pred EcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcC
Q 043978 477 SLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 477 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 556 (683)
++++|++.+.+|..+..+. +|+.|++++|++.+..|..+.++++|+.|++++|.+++..|..|..+++|++|++++|++
T Consensus 481 ~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred ECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 7777777666666665544 677777777777666666677777777777777777766677777777777777777777
Q ss_pred CccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCc
Q 043978 557 NDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNE 605 (683)
Q Consensus 557 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 605 (683)
.+.+|..+..+++|+.|++++|++.+.+|... .+..+....+.+|+
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~---~~~~~~~~~~~~n~ 605 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTG---AFLAINASAVAGNI 605 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcceeeCCCcc---hhcccChhhhcCCc
Confidence 66667666677777777777777766665332 22233334445554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-53 Score=495.49 Aligned_cols=527 Identities=29% Similarity=0.440 Sum_probs=343.3
Q ss_pred cCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccC-cCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 36 HLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEI-SHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~-~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
+++.|+|++|.+.+. .+..|..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+. +.+|. ..+++|+
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~---~~~p~--~~l~~L~ 143 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT---GSIPR--GSIPNLE 143 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc---cccCc--cccCCCC
Confidence 455566655555443 44455555666666666655554444333 35555555555555544 11221 2345555
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCC
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSL 193 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~ 193 (683)
+|++++|.+.+..|..++.+ ++|++|++++|.+.+..|..+.++++|++|++++| .+.+..+ .+..+++|+.|++++
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred EEECcCCcccccCChHHhcC-CCCCEEECccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcC
Confidence 55555555554445555555 55555555555555555555555555555555555 3333333 444445555555555
Q ss_pred CcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
|.+.+.+|..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 55544445455555555555555555444444445555555555555555444444444444555555555554444444
Q ss_pred ccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccc
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 353 (683)
..+..++ +|+.|++++|.+.+.+|. .+..+++|+.|++++|.+..
T Consensus 302 ~~~~~l~-----------------------~L~~L~l~~n~~~~~~~~------------~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 302 ELVIQLQ-----------------------NLEILHLFSNNFTGKIPV------------ALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred hhHcCCC-----------------------CCcEEECCCCccCCcCCh------------hHhcCCCCCEEECcCCCCcC
Confidence 4444444 455555555544443333 34445555555555555321
Q ss_pred cccccccccccCCCCccEEEcccCCCC-CcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC---CCCCce
Q 043978 354 FTSSGNIDIKYSLPSLLKLSFSNCNVS-EFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH---PWKNIR 429 (683)
Q Consensus 354 l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~L~ 429 (683)
..+ ..+..+++|+.|++++|.+. .+|.++ ..+++|+.|++++|.+.+..+. .+++|+
T Consensus 347 ~~p----~~l~~~~~L~~L~Ls~n~l~~~~p~~~---------------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 347 EIP----KNLGKHNNLTVLDLSTNNLTGEIPEGL---------------CSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred cCC----hHHhCCCCCcEEECCCCeeEeeCChhH---------------hCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 100 11224455555555555543 233322 5567899999999998876543 678999
Q ss_pred EEeCCCCCCCccCCC---CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCC
Q 043978 430 TLDLRNNKIQGSILV---PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNN 506 (683)
Q Consensus 430 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n 506 (683)
.|++++|++++..+. .++.|+.|++++|.+.+.++..+..+++|+.|++++|.+.+.+|..+. . ++|+.|++++|
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~-~~L~~L~ls~n 485 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S-KRLENLDLSRN 485 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c-ccceEEECcCC
Confidence 999999999876543 678999999999999999999899999999999999999888887653 3 48999999999
Q ss_pred cccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCC
Q 043978 507 SLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCK 586 (683)
Q Consensus 507 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 586 (683)
++.+..|..|.++++|+.|++++|++.+..|..+..+++|++|++++|.+++.+|..|..+++|+.|++++|++.+.+|.
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred CccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccce
Q 043978 587 SITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATR 630 (683)
Q Consensus 587 ~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~ 630 (683)
.+..++.|+++++++|++.+.+|.. +.+..+......+|+
T Consensus 566 --~l~~l~~L~~l~ls~N~l~~~~p~~--~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 566 --NLGNVESLVQVNISHNHLHGSLPST--GAFLAINASAVAGNI 605 (968)
T ss_pred --hHhcCcccCEEeccCCcceeeCCCc--chhcccChhhhcCCc
Confidence 4577899999999999999999953 223333444445554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-38 Score=309.82 Aligned_cols=357 Identities=23% Similarity=0.276 Sum_probs=185.5
Q ss_pred CEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCC
Q 043978 211 ETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWN 290 (683)
Q Consensus 211 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 290 (683)
+.|++++|++....+..|.++++|+++++..|.++ .+|.......+++.|++.+|.|+....+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34555555555444444555555555555555544 33333333334555555555554444444444455555555555
Q ss_pred cccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCcc
Q 043978 291 KLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLL 370 (683)
Q Consensus 291 ~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~ 370 (683)
.|+. +....|..-.++++|++++|.|+.+.. +.+..+.+|.
T Consensus 160 ~is~-----------------------------------i~~~sfp~~~ni~~L~La~N~It~l~~----~~F~~lnsL~ 200 (873)
T KOG4194|consen 160 LISE-----------------------------------IPKPSFPAKVNIKKLNLASNRITTLET----GHFDSLNSLL 200 (873)
T ss_pred hhhc-----------------------------------ccCCCCCCCCCceEEeecccccccccc----ccccccchhe
Confidence 4443 222244444455555555555544422 2233444555
Q ss_pred EEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCccccc---CCCCCCCceEEeCCCCCCC---ccCCC
Q 043978 371 KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQ---GSILV 444 (683)
Q Consensus 371 ~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~n~l~---~~~~~ 444 (683)
.|.++.|+++.+|... |+.++.|+.|++..|++... .+.++++|+.|.+..|.|. +..|.
T Consensus 201 tlkLsrNrittLp~r~--------------Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRS--------------FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred eeecccCcccccCHHH--------------hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 5555555555555432 24566666666666665533 3345555566666555443 34444
Q ss_pred CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 445 PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
.+.++++|++..|++...-.+++.++++|+.|++|+|.|...-++.|. ++++|++|+|++|+|+...++.|..+..|++
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCChhHHHHHHHhhh
Confidence 555555555555555555555566666666666666666533333333 2335666666666666555556666666666
Q ss_pred EEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCc---cccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeC
Q 043978 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPC---WLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDL 601 (683)
Q Consensus 525 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 601 (683)
|.|++|.+...-..+|..+.+|++|||++|.+...+.+ .|..+++|+.|.+.||++... ++ ..+..++.|++|||
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~k-rAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PK-RAFSGLEALEHLDL 423 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-ch-hhhccCcccceecC
Confidence 66666666555555556666666666666655443222 344556666666666655422 21 33455555666666
Q ss_pred CCCcCCCCCcHHHHhcchhhccccc
Q 043978 602 SRNEFKDFLPRRNFTSMEAMKNVDE 626 (683)
Q Consensus 602 s~n~~~~~~p~~~~~~~~~L~~l~l 626 (683)
.+|.|.. +..++|..+ .|+.|.+
T Consensus 424 ~~NaiaS-Iq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 424 GDNAIAS-IQPNAFEPM-ELKELVM 446 (873)
T ss_pred CCCccee-ecccccccc-hhhhhhh
Confidence 6666553 333455555 5555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-37 Score=307.66 Aligned_cols=383 Identities=25% Similarity=0.255 Sum_probs=225.7
Q ss_pred CEEEcCCccCCcCChhhhh-cCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECC
Q 043978 114 SLLHLGSTNLSLIKPFSLL-NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS 192 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~-~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 192 (683)
+.|+++++.+..+....+. -+|+.-+.||+++|++...-+..|.++++|+.+++..| .++..+.......+++.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeee
Confidence 3455555555443322222 23456667888888888777777778888888888777 554432233334557888888
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV 272 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 272 (683)
+|.++..-.+.+..++.|+.||++.|.|...-...|..-.++++|++++|.|+....+.|..+.+|..|.++.|.++...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 88777666667777888888888888887665666777777888888888888777777888888888888888887655
Q ss_pred CccccCCCCCcEEEccCCcccCc-CCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCc
Q 043978 273 PSWLFTLPSLVSVNLAWNKLTGP-IDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL 351 (683)
Q Consensus 273 ~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 351 (683)
+..|..+++|+.|+|..|+|... .-.|.++++|+.|.+..|.|. .++.+.|..+.++++|+++.|++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~------------kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS------------KLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc------------cccCcceeeecccceeecccchh
Confidence 66666688888888887777642 334446666666666666665 34444566666666666666665
Q ss_pred cccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCC---CCCc
Q 043978 352 LSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHP---WKNI 428 (683)
Q Consensus 352 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L 428 (683)
..+... .. .++++|+.|++|+|.|..+.... +++|
T Consensus 282 ~~vn~g----~l--------------------------------------fgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 282 QAVNEG----WL--------------------------------------FGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhhhcc----cc--------------------------------------cccchhhhhccchhhhheeecchhhhcccc
Confidence 444321 12 34444444444444444433322 2334
Q ss_pred eEEeCCCCCCCcc---CCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCC--hhhhhccCcccEEEC
Q 043978 429 RTLDLRNNKIQGS---ILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP--PCLGNFTTQLITLHL 503 (683)
Q Consensus 429 ~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~--~~~~~~~~~L~~L~l 503 (683)
+.|++++|+|+.. .+..+..|++|++++|.+...-..+|.++++|++|||++|.+...+- ...+...++|+.|++
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 4444444433321 11123344555555555554444455555555555555555543221 112222335555555
Q ss_pred CCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 504 KNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 504 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
.+|++..+...+|.++.+|+.|||.+|.+..+.|.+|..+ .|++|.+.
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 5555555555555555555555555555555555555555 55555553
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-40 Score=313.34 Aligned_cols=267 Identities=26% Similarity=0.299 Sum_probs=233.5
Q ss_pred cccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCC
Q 043978 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKL 113 (683)
Q Consensus 34 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L 113 (683)
-..+..|++++|.+.. +.+.+.++..|.+|++.+|+.... |.+++.+..++.+++++|.+. .+|..+..+.+|
T Consensus 44 qv~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls----~lp~~i~s~~~l 116 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS----ELPEQIGSLISL 116 (565)
T ss_pred hcchhhhhhccCchhh--ccHhhhcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHh----hccHHHhhhhhh
Confidence 3457889999998754 456789999999999999998755 778999999999999999875 667778899999
Q ss_pred CEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCC
Q 043978 114 SLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL 193 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 193 (683)
+++++++|.+... +..++.+ -.+..++..+|+++ ..|+++..+.+|..+++.+| ......+....++.|++|++..
T Consensus 117 ~~l~~s~n~~~el-~~~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 117 VKLDCSSNELKEL-PDSIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhccccceeec-CchHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch
Confidence 9999999998877 5677888 88999999999998 67888999999999999999 7777777555588999999999
Q ss_pred CcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
|.+. .+|..++.+.+|+.|++..|++. ..| .|..|..|++++++.|++.....+....++++..||+++|+++ ..|
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVP 268 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCc
Confidence 8887 78999999999999999999997 566 8999999999999999998544455568999999999999999 899
Q ss_pred ccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCc
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~ 316 (683)
+.+..+.+|+.||+++|.+++.+..++++ .|+.|.+.+|++.
T Consensus 269 de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 99999999999999999999988888888 9999999999986
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-40 Score=310.56 Aligned_cols=489 Identities=26% Similarity=0.326 Sum_probs=298.2
Q ss_pred CCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCc
Q 043978 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLR 163 (683)
Q Consensus 84 ~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 163 (683)
..|+.+.+++|.+.. +...+.++..|..|++.+|.+... |.+++.+ ..++.++.++|+++ .+|+.+..+.+|+
T Consensus 45 v~l~~lils~N~l~~----l~~dl~nL~~l~vl~~~~n~l~~l-p~aig~l-~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV----LREDLKNLACLTVLNVHDNKLSQL-PAAIGEL-EALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCchhh----ccHhhhcccceeEEEeccchhhhC-CHHHHHH-HHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 345666666665542 222345666666666666666555 4455566 66666666666666 4566666666666
Q ss_pred EEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc
Q 043978 164 VLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNH 243 (683)
Q Consensus 164 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 243 (683)
+++.+.| .+. ..++.++.+..++.++..+|++. ..|..+..+.++..+++.+|+
T Consensus 118 ~l~~s~n-~~~------------------------el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 118 KLDCSSN-ELK------------------------ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK 171 (565)
T ss_pred hhhcccc-cee------------------------ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccc
Confidence 6666555 333 34444555555555555555554 445555555555555555555
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccc
Q 043978 244 LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSL 323 (683)
Q Consensus 244 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 323 (683)
+....|..+. ++.|++||...|-+. .+|..++.+.+|+.|++..|++.. .+.|.+++.|++++++.|+|.
T Consensus 172 l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lPef~gcs~L~Elh~g~N~i~------- 241 (565)
T KOG0472|consen 172 LKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LPEFPGCSLLKELHVGENQIE------- 241 (565)
T ss_pred hhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CCCCCccHHHHHHHhcccHHH-------
Confidence 5543333333 556666666666555 455556666666666666666653 335556666666666666654
Q ss_pred hhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccC
Q 043978 324 FQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKG 403 (683)
Q Consensus 324 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~ 403 (683)
.++.+...+++++..||+.+|++.++|+. ..-+.+|+.||+++|.|+.+|..+ ++
T Consensus 242 -----~lpae~~~~L~~l~vLDLRdNklke~Pde-----~clLrsL~rLDlSNN~is~Lp~sL---------------gn 296 (565)
T KOG0472|consen 242 -----MLPAEHLKHLNSLLVLDLRDNKLKEVPDE-----ICLLRSLERLDLSNNDISSLPYSL---------------GN 296 (565)
T ss_pred -----hhHHHHhcccccceeeeccccccccCchH-----HHHhhhhhhhcccCCccccCCccc---------------cc
Confidence 22222344566666666666665555432 223555666666666666555432 33
Q ss_pred CCcCcEEECCCCcccccCCC--------CCCCceE----EeCCCCCC---C-c----cCC---CCCCCCcEEEccCCccc
Q 043978 404 WKSLIDLDLSNNFLTHIALH--------PWKNIRT----LDLRNNKI---Q-G----SIL---VPPPSTEVFLVSNNKLS 460 (683)
Q Consensus 404 ~~~L~~L~l~~n~~~~~~~~--------~~~~L~~----L~l~~n~l---~-~----~~~---~~~~~L~~L~l~~n~i~ 460 (683)
+ .|+.|.+.+|.+..+.-. .++.|+. =.++..+- + . ..+ ....+.+.|++++-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 3 555566666655433100 0011111 00111000 0 0 000 12345677777777777
Q ss_pred CCCCccccCCC--CCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCch
Q 043978 461 GQIPPYICSLS--SLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR 538 (683)
Q Consensus 461 ~~~~~~l~~l~--~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 538 (683)
....+.|..-+ -.+..++++|++. ++|..+.....-.+.+.+++|.+. .+|..++.+++|..|++++|.+. .+|.
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcch
Confidence 44434444332 2778889999987 888877766544455666666664 67778888899999999999887 6788
Q ss_pred hhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 539 SLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 539 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
.+..+..|+.|+++.|++. ..|..+..+..++++-.++|++....+ .....+.+|.+||+.+|.+. .+| -.+++|
T Consensus 453 e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~--~~l~nm~nL~tLDL~nNdlq-~IP-p~Lgnm 527 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP--SGLKNMRNLTTLDLQNNDLQ-QIP-PILGNM 527 (565)
T ss_pred hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh--HHhhhhhhcceeccCCCchh-hCC-hhhccc
Confidence 8888888999999999887 678877777888888888888876544 34577888999999999997 567 368999
Q ss_pred hhhcccccccceeeeccccceeeEEEEEEeccEEEEee
Q 043978 619 EAMKNVDEQATRLQYMGHAYYDESVTVAMKGHDFQLYM 656 (683)
Q Consensus 619 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (683)
.+|+++++.+|+|+ +++..+.++|+.+.+.+
T Consensus 528 tnL~hLeL~gNpfr-------~Pr~~iLmkgT~aiL~y 558 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR-------QPRHQILMKGTAAILSY 558 (565)
T ss_pred cceeEEEecCCccC-------CCHHHHhccChHHHHHH
Confidence 99999999988775 35566777777655444
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-36 Score=314.53 Aligned_cols=502 Identities=25% Similarity=0.288 Sum_probs=300.4
Q ss_pred EeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcC
Q 043978 65 LNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144 (683)
Q Consensus 65 L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~ 144 (683)
+|.+++.+.- +|..+..-..++.|+++.|.+...+ + ..+.+.-+|+.|++++|.+... |..+..+ ..|+.|+++
T Consensus 3 vd~s~~~l~~-ip~~i~~~~~~~~ln~~~N~~l~~p--l-~~~~~~v~L~~l~lsnn~~~~f-p~~it~l-~~L~~ln~s 76 (1081)
T KOG0618|consen 3 VDASDEQLEL-IPEQILNNEALQILNLRRNSLLSRP--L-EFVEKRVKLKSLDLSNNQISSF-PIQITLL-SHLRQLNLS 76 (1081)
T ss_pred cccccccCcc-cchhhccHHHHHhhhccccccccCc--h-HHhhheeeeEEeeccccccccC-CchhhhH-HHHhhcccc
Confidence 5666666653 4555555555888888888654222 2 2245555688888888777665 6667777 778888888
Q ss_pred CCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccC
Q 043978 145 GTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSI 224 (683)
Q Consensus 145 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 224 (683)
.|.|. ..|.....+.+|+++.|.+| ........+..+++|++|++++|.+. .+|..+..+..++.+..++|.....
T Consensus 77 ~n~i~-~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~- 152 (1081)
T KOG0618|consen 77 RNYIR-SVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR- 152 (1081)
T ss_pred hhhHh-hCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh-
Confidence 88777 45667777778888888777 55444446666777777777777766 5666777777777777777622211
Q ss_pred CCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCC
Q 043978 225 PTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNS 304 (683)
Q Consensus 225 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~ 304 (683)
++... ++.+++..|.+.+.++..+..+.. .|++++|.+. . ..+..+++|+.+....|++..... .-++
T Consensus 153 ---lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~~---~g~~ 220 (1081)
T KOG0618|consen 153 ---LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELEI---SGPS 220 (1081)
T ss_pred ---hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEEe---cCcc
Confidence 22222 666666666666666655555555 5777777665 1 224456666666666666543211 2356
Q ss_pred CcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcCh
Q 043978 305 LEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS 384 (683)
Q Consensus 305 L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~ 384 (683)
++.|+.++|.++...+ -..-.+|+.++++.|++..++ +....+++|+.+....|.+..+|.
T Consensus 221 l~~L~a~~n~l~~~~~--------------~p~p~nl~~~dis~n~l~~lp-----~wi~~~~nle~l~~n~N~l~~lp~ 281 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDV--------------HPVPLNLQYLDISHNNLSNLP-----EWIGACANLEALNANHNRLVALPL 281 (1081)
T ss_pred hheeeeccCcceeecc--------------ccccccceeeecchhhhhcch-----HHHHhcccceEecccchhHHhhHH
Confidence 6677777776652111 122345667777777665554 123356667777777776666655
Q ss_pred hhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC--CCCCceEEeCCCCCCCccCCC----CCCCCcEEEccCCc
Q 043978 385 FLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH--PWKNIRTLDLRNNKIQGSILV----PPPSTEVFLVSNNK 458 (683)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~ 458 (683)
.+ ...++|+.+.+..|.+..+++. .+..|++|++..|++...... ....+..|+.+.|.
T Consensus 282 ri---------------~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 282 RI---------------SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred HH---------------hhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 43 3345666667777766666443 466677777777766543221 12224455555555
Q ss_pred ccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCch
Q 043978 459 LSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR 538 (683)
Q Consensus 459 i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 538 (683)
+.....-.=...+.|+.|.+.+|.+++..-+.+..+. +|+.|+|++|++...+...+.++..|+.|+||+|+++ .+|.
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence 5432211122344566666677766655444454444 6777777777766666666666667777777777766 4566
Q ss_pred hhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 539 SLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 539 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
+...+..|++|..-+|.+. ..| .+..+++|+.+|++.|+++...- ......++|++||+++|.-. ......|..+
T Consensus 425 tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l--~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l 499 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL--PEALPSPNLKYLDLSGNTRL-VFDHKTLKVL 499 (1081)
T ss_pred HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh--hhhCCCcccceeeccCCccc-ccchhhhHHh
Confidence 6666777777777666665 455 46666777777777776653321 11122256777777777643 3444555555
Q ss_pred hhhcccccccc
Q 043978 619 EAMKNVDEQAT 629 (683)
Q Consensus 619 ~~L~~l~l~~n 629 (683)
..+..++..-+
T Consensus 500 ~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 500 KSLSQMDITLN 510 (1081)
T ss_pred hhhhheecccC
Confidence 55555554433
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=308.37 Aligned_cols=504 Identities=24% Similarity=0.269 Sum_probs=352.4
Q ss_pred EECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeC
Q 043978 12 LDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGL 91 (683)
Q Consensus 12 L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l 91 (683)
+|.++ ...+ .++. .+.....+..|+++.|.+.... .+++.+..+|+.||+++|.+.. .|..+..+.+|+.|++
T Consensus 3 vd~s~--~~l~-~ip~--~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~ 75 (1081)
T KOG0618|consen 3 VDASD--EQLE-LIPE--QILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQISS-FPIQITLLSHLRQLNL 75 (1081)
T ss_pred ccccc--ccCc-ccch--hhccHHHHHhhhccccccccCc-hHHhhheeeeEEeecccccccc-CCchhhhHHHHhhccc
Confidence 45555 5544 3444 4555566999999999765432 3456667779999999998864 4788999999999999
Q ss_pred CCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCC
Q 043978 92 SCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNI 171 (683)
Q Consensus 92 s~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 171 (683)
+.|.+. .+|....++.+|+++.|.+|.+... |..+..+ ++|++|++++|.+. .+|..+..+..+..+..++|
T Consensus 76 s~n~i~----~vp~s~~~~~~l~~lnL~~n~l~~l-P~~~~~l-knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N- 147 (1081)
T KOG0618|consen 76 SRNYIR----SVPSSCSNMRNLQYLNLKNNRLQSL-PASISEL-KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNN- 147 (1081)
T ss_pred chhhHh----hCchhhhhhhcchhheeccchhhcC-chhHHhh-hcccccccchhccC-CCchhHHhhhHHHHHhhhcc-
Confidence 999886 5566778899999999998887766 7788888 99999999999888 67888888888888888887
Q ss_pred CCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCcc
Q 043978 172 HLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHH 251 (683)
Q Consensus 172 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 251 (683)
........ .. ++.+++..+.+.+.++..+..+.. .+++.+|.+. ...+..+++|+.+....|++....
T Consensus 148 ~~~~~lg~---~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~--- 215 (1081)
T KOG0618|consen 148 EKIQRLGQ---TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE--- 215 (1081)
T ss_pred hhhhhhcc---cc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---
Confidence 22222221 11 677777777777777766666665 6888888765 234556777777777777665321
Q ss_pred ccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCccc
Q 043978 252 VSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331 (683)
Q Consensus 252 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~ 331 (683)
-.-++++.|+.++|.++...+. ..-.+|+.+++++|+++..+.++..+.+|+.+.+.+|.++ .+|.
T Consensus 216 -~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~---------- 281 (1081)
T KOG0618|consen 216 -ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPL---------- 281 (1081)
T ss_pred -ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHH----------
Confidence 1235677777777776632221 2234677777777777665555556667777777777664 3443
Q ss_pred ccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEE
Q 043978 332 FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLD 411 (683)
Q Consensus 332 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 411 (683)
.+....+|+.|.+..|.+..++. ....+++|++|++..|.+..+|+-+.. -.
T Consensus 282 --ri~~~~~L~~l~~~~nel~yip~-----~le~~~sL~tLdL~~N~L~~lp~~~l~--------------v~------- 333 (1081)
T KOG0618|consen 282 --RISRITSLVSLSAAYNELEYIPP-----FLEGLKSLRTLDLQSNNLPSLPDNFLA--------------VL------- 333 (1081)
T ss_pred --HHhhhhhHHHHHhhhhhhhhCCC-----cccccceeeeeeehhccccccchHHHh--------------hh-------
Confidence 33445566666666666555532 122455666666666666555542211 00
Q ss_pred CCCCcccccCCCCCCCceEEeCCCCCCCccCC---CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCC
Q 043978 412 LSNNFLTHIALHPWKNIRTLDLRNNKIQGSIL---VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP 488 (683)
Q Consensus 412 l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 488 (683)
...++.++.+.|++..... ...+.|+.|++.+|.+++...+.+.+.++|+.|+|++|++. .+|
T Consensus 334 -------------~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fp 399 (1081)
T KOG0618|consen 334 -------------NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFP 399 (1081)
T ss_pred -------------hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCC
Confidence 1123444444444432221 14567899999999999988889999999999999999998 888
Q ss_pred hhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccC-CccccCC
Q 043978 489 PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTF-PCWLGSL 567 (683)
Q Consensus 489 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l 567 (683)
.......+.|+.|+||||+++.. |+....++.|++|...+|++. ..| .+..++.|+.+|+|.|+++... |... .-
T Consensus 400 as~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~ 475 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PS 475 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CC
Confidence 87666666999999999999854 588889999999999999998 777 7999999999999999997643 3222 22
Q ss_pred CCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCC
Q 043978 568 PLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRN 604 (683)
Q Consensus 568 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 604 (683)
++|++||++||.-.... ...+..+..+...++.-+
T Consensus 476 p~LkyLdlSGN~~l~~d--~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRLVFD--HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccceeeccCCcccccc--hhhhHHhhhhhheecccC
Confidence 89999999999853221 123344556666666666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.5e-32 Score=273.06 Aligned_cols=182 Identities=24% Similarity=0.327 Sum_probs=143.8
Q ss_pred CCCCcEEEccCCccc-CCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 446 PPSTEVFLVSNNKLS-GQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
+++|++|.+++.+-+ ..+|..+.++.+|..+|+|.|.+. .+|.++..+. +|+.|+||+|+|+.. ......-.+|++
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS~N~iteL-~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLSGNKITEL-NMTEGEWENLET 272 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccCcCceeee-eccHHHHhhhhh
Confidence 344455555554422 357788888999999999999998 8999999887 899999999998854 223334467999
Q ss_pred EEcCCCcccccCchhhhcCCCCcEEEccCCcCCcc-CCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCC
Q 043978 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT-FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603 (683)
Q Consensus 525 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 603 (683)
|++|.|+++ .+|.++..+++|+.|++.+|+++-. +|.+++.+.+|+++..++|.+.- .| ..++.+..|+.|.+++
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VP--EglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VP--EGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-Cc--hhhhhhHHHHHhcccc
Confidence 999999998 7899999999999999999987643 78889999999999999998863 33 4668889999999999
Q ss_pred CcCCCCCcHHHHhcchhhcccccccceeeeccc
Q 043978 604 NEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGH 636 (683)
Q Consensus 604 n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~~~~ 636 (683)
|++. .+| +...-++.|..+|+..|+--...+
T Consensus 349 NrLi-TLP-eaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 349 NRLI-TLP-EAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccee-ech-hhhhhcCCcceeeccCCcCccCCC
Confidence 9997 688 557778999999998887555443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.4e-31 Score=266.26 Aligned_cols=365 Identities=25% Similarity=0.302 Sum_probs=295.9
Q ss_pred cccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCC
Q 043978 32 FRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLT 111 (683)
Q Consensus 32 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~ 111 (683)
+-++-+|-.|+++|.+++..+|.....+++++.|.|....+.. +|+.++.+.+|++|.+++|++.. +...++.++
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~----vhGELs~Lp 78 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLIS----VHGELSDLP 78 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHh----hhhhhccch
Confidence 3456688899999999977789999999999999999888764 58999999999999999998763 333457889
Q ss_pred CCCEEEcCCccCCc-CChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEE
Q 043978 112 KLSLLHLGSTNLSL-IKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLREL 189 (683)
Q Consensus 112 ~L~~L~L~~n~l~~-~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L 189 (683)
.||.+.+..|++.. -.|..+.++ ..|..||||+|++. +.|..+...+++-+|++++| .+...+. .+.++..|-.|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhHHHhhhccccccCCCCchhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhh
Confidence 99999999888733 236778888 99999999999998 68999999999999999998 4443333 67788889999
Q ss_pred ECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCcccc-ccCCccccCCCCCCEEEccCCcC
Q 043978 190 DLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT-GQLPHHVSGLLYLTNLDLFGNSL 268 (683)
Q Consensus 190 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l 268 (683)
+|++|.+. .+|..+..+..|++|++++|.+...-...+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 99999988 78889999999999999999877544455667888899999886543 46788899999999999999999
Q ss_pred cccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCC
Q 043978 269 QGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSN 348 (683)
Q Consensus 269 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 348 (683)
. .+|+.+..+++|+.|+|++|+|+........+.+|++|+++.|+++ .+|+ ++..++.|+.|.+.+
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~------------avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPD------------AVCKLTKLTKLYANN 300 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchH------------HHhhhHHHHHHHhcc
Confidence 9 8999999999999999999999987766677889999999999998 6666 677789999999999
Q ss_pred CCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC--CCCC
Q 043978 349 NNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL--HPWK 426 (683)
Q Consensus 349 n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~ 426 (683)
|++. -.|.-.....+..|+.+..++|.+.-+|+.+ ..|..|+.|.++.|.+...+. .-++
T Consensus 301 NkL~---FeGiPSGIGKL~~Levf~aanN~LElVPEgl---------------cRC~kL~kL~L~~NrLiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 301 NKLT---FEGIPSGIGKLIQLEVFHAANNKLELVPEGL---------------CRCVKLQKLKLDHNRLITLPEAIHLLP 362 (1255)
T ss_pred Cccc---ccCCccchhhhhhhHHHHhhccccccCchhh---------------hhhHHHHHhcccccceeechhhhhhcC
Confidence 9843 2333344557778888888888888777765 667778888888877665543 2456
Q ss_pred CceEEeCCCCC
Q 043978 427 NIRTLDLRNNK 437 (683)
Q Consensus 427 ~L~~L~l~~n~ 437 (683)
.|+.||++.|+
T Consensus 363 ~l~vLDlreNp 373 (1255)
T KOG0444|consen 363 DLKVLDLRENP 373 (1255)
T ss_pred CcceeeccCCc
Confidence 66666666664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=9.2e-22 Score=229.97 Aligned_cols=335 Identities=20% Similarity=0.234 Sum_probs=252.4
Q ss_pred CccccCCCCCCEEEccCCcc------cccCCCCCCCCC-CCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 201 PYSIGNLLFLETVDITYCNF------MGSIPTSTGNLS-KATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 201 ~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
+.+|.++++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 34678888898888865532 224566666654 6899999888776 456656 4688999999999887 567
Q ss_pred ccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCC-cc
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNN-LL 352 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~ 352 (683)
..+..+++|+.|+++++.....++.+..+++|+.|++++|.....+|. .+..+++|+.|++++|. ++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~------------si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS------------SIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch------------hhhccCCCCEEeCCCCCCcC
Confidence 777888999999998876555556677888999999998876666666 56778899999998864 44
Q ss_pred ccccccccccccCCCCccEEEcccCC-CCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC-CCCCceE
Q 043978 353 SFTSSGNIDIKYSLPSLLKLSFSNCN-VSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH-PWKNIRT 430 (683)
Q Consensus 353 ~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~ 430 (683)
.++. ...+++|+.|++++|. +..+|. ..++|+.|++++|.+..++.. .+++|+.
T Consensus 696 ~Lp~------~i~l~sL~~L~Lsgc~~L~~~p~------------------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~ 751 (1153)
T PLN03210 696 ILPT------GINLKSLYRLNLSGCSRLKSFPD------------------ISTNISWLDLDETAIEEFPSNLRLENLDE 751 (1153)
T ss_pred ccCC------cCCCCCCCEEeCCCCCCcccccc------------------ccCCcCeeecCCCcccccccccccccccc
Confidence 4432 2267889999999884 333332 235788899999988776543 5678888
Q ss_pred EeCCCCCCC----------ccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccE
Q 043978 431 LDLRNNKIQ----------GSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLIT 500 (683)
Q Consensus 431 L~l~~n~l~----------~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 500 (683)
|++.++... ......+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|... . .++|+.
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~sL~~ 829 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N-LESLES 829 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-ccccCE
Confidence 888764321 1112346789999999998888899999999999999999986555788765 3 459999
Q ss_pred EECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcC
Q 043978 501 LHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580 (683)
Q Consensus 501 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 580 (683)
|++++|......|.. .++|+.|++++|.++ .+|..+..+++|++|++++|+-...+|..+..+++|+.+++++|.-
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 999998654344432 468999999999998 6788899999999999999654446777788899999999999974
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.6e-21 Score=227.95 Aligned_cols=336 Identities=19% Similarity=0.136 Sum_probs=232.5
Q ss_pred CCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCC-----CCCCcccCCCC-CCCEEeCCCCCCCCCCCcc
Q 043978 6 TGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLG-----SRISPEFGRLK-ELTYLNPSFSNFGGLVPSE 79 (683)
Q Consensus 6 ~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~~~~~~~~l~-~L~~L~Ls~~~~~~~~~~~ 79 (683)
+.+|+.+.+.. ..+........+|..+++|++|.+..+.... ..+|..|..++ +|+.|.+.++.+... |..
T Consensus 531 ~~~v~~i~l~~--~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~ 607 (1153)
T PLN03210 531 TKKVLGITLDI--DEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSN 607 (1153)
T ss_pred cceeeEEEecc--CccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCc
Confidence 55677665544 3333222233478999999999997654211 22566677764 699999999988655 666
Q ss_pred CcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCC
Q 043978 80 ISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLL 159 (683)
Q Consensus 80 ~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l 159 (683)
| ...+|++|+++++.+. .++..+..+++|+.|+++++......| .+..+ ++|++|++++|.....+|..+..+
T Consensus 608 f-~~~~L~~L~L~~s~l~----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l-~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 608 F-RPENLVKLQMQGSKLE----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMA-TNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred C-CccCCcEEECcCcccc----ccccccccCCCCCEEECCCCCCcCcCC-ccccC-CcccEEEecCCCCccccchhhhcc
Confidence 6 5789999999999876 344456789999999999876444434 47777 999999999987777889999999
Q ss_pred CCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeec
Q 043978 160 PNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILF 239 (683)
Q Consensus 160 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 239 (683)
++|+.|++++|..+. .+|....+++|+.|++++|.....+|.. ..+|+.|+++++.+. .+|..+ .+++|++|.+
T Consensus 681 ~~L~~L~L~~c~~L~-~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l 754 (1153)
T PLN03210 681 NKLEDLDMSRCENLE-ILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELIL 754 (1153)
T ss_pred CCCCEEeCCCCCCcC-ccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccc
Confidence 999999999984444 4453337889999999998765555543 457889999998876 456554 5778888888
Q ss_pred cCccccc-------cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCC
Q 043978 240 ASNHLTG-------QLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEK 312 (683)
Q Consensus 240 ~~n~l~~-------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~ 312 (683)
.++.... ..+......++|+.|++++|.....+|..++.+++|+.|++++|.....++....+++|+.|++++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG 834 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence 7643221 111122334678888888887666778888888888888888775433333333677778888877
Q ss_pred CcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccC
Q 043978 313 NQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377 (683)
Q Consensus 313 n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 377 (683)
|.....+|. ..++|+.|++++|.++.+|. ....+++|+.|++++|
T Consensus 835 c~~L~~~p~---------------~~~nL~~L~Ls~n~i~~iP~-----si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 835 CSRLRTFPD---------------ISTNISDLNLSRTGIEEVPW-----WIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCccccccc---------------cccccCEeECCCCCCccChH-----HHhcCCCCCEEECCCC
Confidence 754433332 12467777777777665542 2335667777777765
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-24 Score=206.06 Aligned_cols=285 Identities=21% Similarity=0.154 Sum_probs=163.8
Q ss_pred CCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCC-CcCccccCCHHHHHccCCCCCE
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSL 115 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~-n~~~~~~~~~~~~~~~l~~L~~ 115 (683)
-..++|..|.|+.+ -+.+|+.+++||.||||+|.|+.+.|.+|.++++|..|-+-+ |+++.... ..|.++..|+.
T Consensus 69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k---~~F~gL~slqr 144 (498)
T KOG4237|consen 69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK---GAFGGLSSLQR 144 (498)
T ss_pred ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh---hHhhhHHHHHH
Confidence 45677777777665 456677777777777777777777777777777766665544 66653222 22566777777
Q ss_pred EEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCc
Q 043978 116 LHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSD 195 (683)
Q Consensus 116 L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~ 195 (683)
|.+.-|++.-+..+.|..+ +++..|.+..|.+.......+..+..++.+.+..| .+.. ..+++.+... +
T Consensus 145 LllNan~i~Cir~~al~dL-~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n-p~ic----dCnL~wla~~-~---- 213 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDL-PSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN-PFIC----DCNLPWLADD-L---- 213 (498)
T ss_pred HhcChhhhcchhHHHHHHh-hhcchhcccchhhhhhccccccchhccchHhhhcC-cccc----ccccchhhhH-H----
Confidence 7777777777766777777 77777777777766443346666777777766665 2111 1111111110 0
Q ss_pred CccccCccccCCCCCCEEEccCCcccccCCCCCCCC-CCCCeeeccCccccccCC-ccccCCCCCCEEEccCCcCcccCC
Q 043978 196 FSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNL-SKATEILFASNHLTGQLP-HHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 196 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
...|..++......-..+.+.++....+..|... ..+.+=-.+.+...+..| ..|..+++|++|++++|+++.+-+
T Consensus 214 --a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 214 --AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred --hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 0112222222223333333333332222222211 111111111222222222 456777777777777777777777
Q ss_pred ccccCCCCCcEEEccCCcccCcC-CCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCC
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNN 350 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 350 (683)
.+|.+...+++|.|..|++.... ..|.++..|+.|+|.+|+|+ .+...+|..+.+|.+|.+-.|.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it------------~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT------------TVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE------------EEecccccccceeeeeehccCc
Confidence 77777777777777777776533 23446777777777777776 3333466677777777776665
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=9.9e-21 Score=204.80 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=22.2
Q ss_pred CEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCc
Q 043978 259 TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 259 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~ 316 (683)
..|+++.+.++ .+|..+. ++|+.|++.+|+++..+. .+++|++|++++|+++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccC
Confidence 34444444444 3343332 244444444444443221 1244444444444444
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=9.8e-24 Score=200.03 Aligned_cols=277 Identities=19% Similarity=0.156 Sum_probs=182.5
Q ss_pred CCCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCC-CCCCCCCCccCcCC
Q 043978 5 VTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSF-SNFGGLVPSEISHL 83 (683)
Q Consensus 5 ~~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~-~~~~~~~~~~~~~l 83 (683)
.+...+.++|.. +.|+ .+++ .+|..+++||.||||+|.|+.+ -|+.|..++.|..|-+.+ |+|+.+....|.++
T Consensus 65 LP~~tveirLdq--N~I~-~iP~-~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 65 LPPETVEIRLDQ--NQIS-SIPP-GAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CCCcceEEEecc--CCcc-cCCh-hhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 356788899988 8887 3443 5999999999999999999887 788999999988877666 89999988999999
Q ss_pred CCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCC------------
Q 043978 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN------------ 151 (683)
Q Consensus 84 ~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~------------ 151 (683)
..|+.|.+.-|.+. -.....+..+++|..|.+..|.+..+...+|..+ ..++.+.+..|.+...
T Consensus 140 ~slqrLllNan~i~---Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l-~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 140 SSLQRLLLNANHIN---CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL-AAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred HHHHHHhcChhhhc---chhHHHHHHhhhcchhcccchhhhhhccccccch-hccchHhhhcCccccccccchhhhHHhh
Confidence 99999999988877 3445568899999999999999988877788888 9999999988863211
Q ss_pred CCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEE--EC-CCCcCccccC-ccccCCCCCCEEEccCCcccccCCCC
Q 043978 152 FPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLREL--DL-SLSDFSGEIP-YSIGNLLFLETVDITYCNFMGSIPTS 227 (683)
Q Consensus 152 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L--~L-~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 227 (683)
.|..++......-..+.+. ......+ -.....++.+ .+ +.+......| ..|..+++|+.|++++|+++..-+.+
T Consensus 216 ~~ietsgarc~~p~rl~~~-Ri~q~~a-~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYK-RINQEDA-RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred chhhcccceecchHHHHHH-Hhcccch-hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 1111111111111111111 1111000 0000011111 11 1111111222 24566666666666666666666666
Q ss_pred CCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcc
Q 043978 228 TGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKL 292 (683)
Q Consensus 228 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 292 (683)
|.....+++|.+..|++.......|.++..|+.|++.+|+|+...|.+|..+..|.+|.+-.|.+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66666666666666666655556666666666666666666666666666666666666665544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.5e-20 Score=203.49 Aligned_cols=262 Identities=25% Similarity=0.303 Sum_probs=132.4
Q ss_pred CeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCc
Q 043978 235 TEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 235 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~ 314 (683)
..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|. ..++|+.|++++|+++..+. ..++|+.|++++|.
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccC---cccccceeeccCCc
Confidence 34444444444 2333332 24555555555554 2332 13455555555555553321 12455555555555
Q ss_pred CcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhcccccc
Q 043978 315 IHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHG 394 (683)
Q Consensus 315 i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~ 394 (683)
+. .+|. ..++|+.|++++|+++.++. .+++|+.|++++|++..+|..
T Consensus 274 L~-~Lp~---------------lp~~L~~L~Ls~N~Lt~LP~--------~p~~L~~LdLS~N~L~~Lp~l--------- 320 (788)
T PRK15387 274 LT-HLPA---------------LPSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLASLPAL--------- 320 (788)
T ss_pred hh-hhhh---------------chhhcCEEECcCCccccccc--------cccccceeECCCCccccCCCC---------
Confidence 54 1221 11345555666665544432 134556666666555554421
Q ss_pred ccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCC
Q 043978 395 RISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLK 474 (683)
Q Consensus 395 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 474 (683)
...|+.|++++|.++.++. ...+|+.|++++|++++. +..+++|+.|++++|.+.. +|.. ..+|+
T Consensus 321 ---------p~~L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N~Ls~L-P~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~ 385 (788)
T PRK15387 321 ---------PSELCKLWAYNNQLTSLPT-LPSGLQELSVSDNQLASL-PTLPSELYKLWAYNNRLTS-LPAL---PSGLK 385 (788)
T ss_pred ---------cccccccccccCccccccc-cccccceEecCCCccCCC-CCCCcccceehhhcccccc-Cccc---ccccc
Confidence 1234555555555554332 123456666666665532 2234455556666665553 3332 23566
Q ss_pred EEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCC
Q 043978 475 YLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554 (683)
Q Consensus 475 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 554 (683)
.|++++|++. .+|.. +++|+.|++++|+++++ |.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|
T Consensus 386 ~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 386 ELIVSGNRLT-SLPVL----PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred eEEecCCccc-CCCCc----ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 6666666665 45432 23566666666666643 322 235666666666666 45666666666666777666
Q ss_pred cCCccCCccc
Q 043978 555 MINDTFPCWL 564 (683)
Q Consensus 555 ~l~~~~~~~l 564 (683)
++++..+..+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 6665544444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.4e-19 Score=195.63 Aligned_cols=141 Identities=21% Similarity=0.327 Sum_probs=68.6
Q ss_pred cCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCC
Q 043978 406 SLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG 485 (683)
Q Consensus 406 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~ 485 (683)
+|+.|++++|+++.++....++|+.|++++|.++......+++|+.|++++|.++. +|..+. ++|+.|++++|++.
T Consensus 284 sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~- 359 (754)
T PRK15370 284 ELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT- 359 (754)
T ss_pred CCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-
Confidence 34444554444444332222344445555554443222233445555555555543 333332 45666666666665
Q ss_pred CCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhh----hcCCCCcEEEccCCcCC
Q 043978 486 TIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL----AKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 486 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~ 557 (683)
.+|..+. ++|+.|++++|+++..+ ..+. ..|+.|++++|+++ .+|..+ ..++.+..|++.+|++.
T Consensus 360 ~LP~~lp---~~L~~LdLs~N~Lt~LP-~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 360 VLPETLP---PTITTLDVSRNALTNLP-ENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCChhhc---CCcCEEECCCCcCCCCC-HhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4554332 35666666666665432 2222 24666666666665 333322 22355666666666654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1e-18 Score=190.63 Aligned_cols=249 Identities=23% Similarity=0.296 Sum_probs=160.7
Q ss_pred CCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCc
Q 043978 303 NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEF 382 (683)
Q Consensus 303 ~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 382 (683)
.+...|+++++.++ .+|. .+ .+.|+.|++++|+++.++.. .+++|+.|++++|.++.+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~------------~I--p~~L~~L~Ls~N~LtsLP~~-------l~~nL~~L~Ls~N~LtsL 235 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPA------------CI--PEQITTLILDNNELKSLPEN-------LQGNIKTLYANSNQLTSI 235 (754)
T ss_pred cCceEEEeCCCCcC-cCCc------------cc--ccCCcEEEecCCCCCcCChh-------hccCCCEEECCCCccccC
Confidence 45678888888777 3443 12 24688888888887776532 235788888888888777
Q ss_pred ChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCC
Q 043978 383 PSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQ 462 (683)
Q Consensus 383 p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~ 462 (683)
|..+ .++|+.|++++|.+..++.....+|+.|++++|+++......+++|+.|++++|++..
T Consensus 236 P~~l-----------------~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~- 297 (754)
T PRK15370 236 PATL-----------------PDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRT- 297 (754)
T ss_pred Chhh-----------------hccccEEECcCCccCcCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCcccc-
Confidence 6532 2467888888888876654444578888888887775333344577777777777774
Q ss_pred CCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhc
Q 043978 463 IPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK 542 (683)
Q Consensus 463 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 542 (683)
+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.++.+ |..+. ++|+.|++++|+++ .+|..+.
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N~L~-~LP~~lp- 366 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTSL-PASLP--PELQVLDVSKNQIT-VLPETLP- 366 (754)
T ss_pred Ccccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCccccC-Chhhc--CcccEEECCCCCCC-cCChhhc-
Confidence 343332 36777777777776 4554432 3777777777777653 33332 57777777777776 4555443
Q ss_pred CCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCc--cccCCCCCcEEeCCCCcCC
Q 043978 543 CVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSI--TTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 543 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~~~ 607 (683)
++|++|++++|.++. +|..+. .+|+.|++++|++.. +|... ....++.+..+++.+|+++
T Consensus 367 -~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 -PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 467777777777763 444443 357777777777763 23211 1223466777777777775
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.6e-18 Score=176.55 Aligned_cols=130 Identities=20% Similarity=0.121 Sum_probs=62.2
Q ss_pred eeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC----CCccCcCCCCCCEEeCCCCcCcc---ccCCHHHHHccCCC
Q 043978 40 LNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGL----VPSEISHLSKLTHLGLSCRVLTI---EQRTFDLLASNLTK 112 (683)
Q Consensus 40 L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~ls~n~~~~---~~~~~~~~~~~l~~ 112 (683)
|+|.++.+++......+..+.+|++|+++++.++.. ++..+...++|++++++++.+.. ....++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444444444333333444445555555555554322 23333444555555555544321 00122334455666
Q ss_pred CCEEEcCCccCCcCChhhhhcCcCC---ccEEEcCCCcCCCC----CCccCCCC-CCCcEEEccCC
Q 043978 113 LSLLHLGSTNLSLIKPFSLLNLSST---MTDLDLSGTRIQGN----FPDQIFLL-PNLRVLYLCGN 170 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~l~~~---L~~L~l~~n~i~~~----~~~~l~~l-~~L~~L~l~~n 170 (683)
|++|++++|.+....+..+..+ .. |++|++++|++.+. +...+..+ ++|+.|++++|
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESL-LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHH-hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 6666666666654444444444 33 66666666665521 11223344 55555555555
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=4.6e-18 Score=173.25 Aligned_cols=203 Identities=22% Similarity=0.232 Sum_probs=131.4
Q ss_pred EEECCCCCCCcc-eeecCCCcccccccCCeeeCCCCCCCCC---CCCcccCCCCCCCEEeCCCCCCCC------CCCccC
Q 043978 11 GLDLHGSCSWLR-GTIDDNSTLFRLSHLQSLNLAFNNFLGS---RISPEFGRLKELTYLNPSFSNFGG------LVPSEI 80 (683)
Q Consensus 11 ~L~L~~~~~~~~-~~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~Ls~~~~~~------~~~~~~ 80 (683)
.|+|.+ ..++ ..+.. .+..+++|+.|+++++.+... .++..+...+.+++++++++.+.+ .++..+
T Consensus 2 ~l~L~~--~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l 77 (319)
T cd00116 2 QLSLKG--ELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77 (319)
T ss_pred cccccc--CcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH
Confidence 466766 6665 33444 567888899999999987432 134456777889999999988763 234567
Q ss_pred cCCCCCCEEeCCCCcCccccCCHHHHHccC---CCCCEEEcCCccCCcCC----hhhhhcCcCCccEEEcCCCcCCCC--
Q 043978 81 SHLSKLTHLGLSCRVLTIEQRTFDLLASNL---TKLSLLHLGSTNLSLIK----PFSLLNLSSTMTDLDLSGTRIQGN-- 151 (683)
Q Consensus 81 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~----~~~l~~l~~~L~~L~l~~n~i~~~-- 151 (683)
.++++|++|++++|.+.. ..+..+..+ ++|++|++++|.+++.. ...+..++++|++|++++|.+++.
T Consensus 78 ~~~~~L~~L~l~~~~~~~---~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 78 TKGCGLQELDLSDNALGP---DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HhcCceeEEEccCCCCCh---hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 788999999999998762 233333344 45999999999887432 223444447899999999998843
Q ss_pred --CCccCCCCCCCcEEEccCCCCCccc-C----CCCCCCCCCCEEECCCCcCccc----cCccccCCCCCCEEEccCCcc
Q 043978 152 --FPDQIFLLPNLRVLYLCGNIHLTGY-L----PKCNWSSPLRELDLSLSDFSGE----IPYSIGNLLFLETVDITYCNF 220 (683)
Q Consensus 152 --~~~~l~~l~~L~~L~l~~n~~~~~~-~----~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~ 220 (683)
++..+..+++|++|++++| .+.+. . ..+...++|++|++++|.+.+. +...+..+++|++|++++|.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 155 EALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 2334556677888888877 44321 0 1233345666666666665422 222344455566666665554
Q ss_pred c
Q 043978 221 M 221 (683)
Q Consensus 221 ~ 221 (683)
.
T Consensus 234 ~ 234 (319)
T cd00116 234 T 234 (319)
T ss_pred c
Confidence 4
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=2e-16 Score=133.24 Aligned_cols=159 Identities=27% Similarity=0.437 Sum_probs=129.7
Q ss_pred CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 445 PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
.+..++.|.+++|+++ ..|..+..+.+|+.|++++|++. .+|..+..++ +|+.|+++-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~-klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLP-KLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhch-hhhheecchhhhh-cCccccCCCchhhh
Confidence 3556778888888888 56777888888999999999987 7888888876 8899999888886 67888888999999
Q ss_pred EEcCCCccc-ccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCC
Q 043978 525 FDLNCNKFE-GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603 (683)
Q Consensus 525 L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 603 (683)
||+++|.+. ..+|+.|..++.|+.|++++|.+. .+|..++.+++|+.|.+++|.+.. +| ...+.+..|++|.+.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lp--keig~lt~lrelhiqg 182 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LP--KEIGDLTRLRELHIQG 182 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-Cc--HHHHHHHHHHHHhccc
Confidence 999988876 357888888888999999999886 677788889999999999988763 33 3456788888899999
Q ss_pred CcCCCCCcH
Q 043978 604 NEFKDFLPR 612 (683)
Q Consensus 604 n~~~~~~p~ 612 (683)
|+++ ++|.
T Consensus 183 nrl~-vlpp 190 (264)
T KOG0617|consen 183 NRLT-VLPP 190 (264)
T ss_pred ceee-ecCh
Confidence 9988 5664
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=4.3e-17 Score=137.26 Aligned_cols=158 Identities=25% Similarity=0.392 Sum_probs=117.4
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccc-cccccccCCCCccE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG-HIHDTFENASNIQS 524 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 524 (683)
+.+|+.|++++|++. ..|..++.++.|+.|+++-|++. .+|.+|..++ .|+.||+++|++.+ ..|..|-.++.|+.
T Consensus 55 l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc-hhhhhhccccccccccCCcchhHHHHHHH
Confidence 334444555555555 57778888889999999888887 7888888876 89999999888764 46778888888999
Q ss_pred EEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCC
Q 043978 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRN 604 (683)
Q Consensus 525 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 604 (683)
|++++|.+. .+|...+++++|+.|.+.+|.+. .+|..++.+++|+.|++.+|+++...|+-....-..+=+...+.+|
T Consensus 132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~N 209 (264)
T KOG0617|consen 132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEEN 209 (264)
T ss_pred HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhC
Confidence 999999987 77888899999999999999887 5888888999999999999998755442211111112234455667
Q ss_pred cCCC
Q 043978 605 EFKD 608 (683)
Q Consensus 605 ~~~~ 608 (683)
++..
T Consensus 210 Pwv~ 213 (264)
T KOG0617|consen 210 PWVN 213 (264)
T ss_pred CCCC
Confidence 6653
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=9.1e-14 Score=139.00 Aligned_cols=193 Identities=27% Similarity=0.373 Sum_probs=148.4
Q ss_pred cEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCC
Q 043978 450 EVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC 529 (683)
Q Consensus 450 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 529 (683)
...+++.|++. .+|..++.+..|+.+.+.+|.+. .+|.++..+. .|+.|+++.|+++.. |..+..++ |+.|-+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~-~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE-ALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh-HHHHhhhccchhhcC-ChhhhcCc-ceeEEEec
Confidence 34455555555 67777888888888888888887 7888888776 888889988888744 44444444 88889999
Q ss_pred CcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCC
Q 043978 530 NKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDF 609 (683)
Q Consensus 530 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 609 (683)
|+++ .+|..++...+|..||.+.|.+. .+|..++.+.+|+.|.++.|++....+ .+..+ .|..||+|.|++. .
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~---El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPE---ELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCH---HHhCC-ceeeeecccCcee-e
Confidence 9987 67878888889999999999987 567778889999999999999875433 22333 4788999999998 7
Q ss_pred CcHHHHhcchhhcccccccceeeeccccceeeEEEEEEeccEEEEeeeeeeEE
Q 043978 610 LPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTVAMKGHDFQLYMLNLDQI 662 (683)
Q Consensus 610 ~p~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (683)
+| -.|.+|..|+.+.|.+|+++.- ..++++||.-..|.|+...+-
T Consensus 226 iP-v~fr~m~~Lq~l~LenNPLqSP-------PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LP-VDFRKMRHLQVLQLENNPLQSP-------PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cc-hhhhhhhhheeeeeccCCCCCC-------hHHHHhccceeeeeeecchhc
Confidence 88 6799999999999999988553 446778888777777754443
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.2e-12 Score=124.26 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=47.3
Q ss_pred CCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC-ccccCCCCCCEEEccCCcCcccCCCCcc-----ccC
Q 043978 519 ASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP-CWLGSLPLLKILILRSNRFYGPLCKSIT-----TFS 592 (683)
Q Consensus 519 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~ 592 (683)
+++|+.|++..|............+..|++|||++|++.+... ...+.++.|+.|+++.|.+...-. ... ...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~-~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAE-PDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcC-CCccchhhhcc
Confidence 4444455554442211222223334445555555555443221 123345555555555555432210 000 123
Q ss_pred CCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceee
Q 043978 593 FQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 593 l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
+++|++|+++.|+|.+.---.....+++|+++....|++.
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 4556666666666643222222333444455554444443
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=1.5e-11 Score=109.47 Aligned_cols=124 Identities=21% Similarity=0.258 Sum_probs=37.7
Q ss_pred cccEEECCCCccccccccccc-CCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccc-cCCCCCCEEE
Q 043978 497 QLITLHLKNNSLEGHIHDTFE-NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL-GSLPLLKILI 574 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ 574 (683)
++++|+|++|+|+.+ +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.|++.. +.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEE
Confidence 455555555555433 2232 345556666666665532 23555566666666666665432 223 2456666666
Q ss_pred ccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc--HHHHhcchhhccccc
Q 043978 575 LRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP--RRNFTSMEAMKNVDE 626 (683)
Q Consensus 575 l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p--~~~~~~~~~L~~l~l 626 (683)
+++|++.... .-..+..+++|+.|++.+|++...-. ...+..+++|+.||-
T Consensus 95 L~~N~I~~l~-~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLN-ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCC-CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChH-HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666654322 12334456667777777777653211 235667778887774
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=9e-11 Score=104.54 Aligned_cols=79 Identities=28% Similarity=0.267 Sum_probs=23.3
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccC-chhhhcCCCCcEEEccCCcCCccCC---ccccCCCCCCE
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSL-PRSLAKCVKLEVVNVGNNMINDTFP---CWLGSLPLLKI 572 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~ 572 (683)
.|++|++++|+|+...+.....+++|+.|++++|++.... -..+..+++|++|++.+|++++..- ..+..+|+|+.
T Consensus 65 ~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 65 RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 4444444444444332211123444444444444443221 1334455555555555555543211 12334555655
Q ss_pred EEc
Q 043978 573 LIL 575 (683)
Q Consensus 573 L~l 575 (683)
||-
T Consensus 145 LD~ 147 (175)
T PF14580_consen 145 LDG 147 (175)
T ss_dssp ETT
T ss_pred eCC
Confidence 543
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=3.5e-12 Score=120.63 Aligned_cols=226 Identities=23% Similarity=0.217 Sum_probs=121.4
Q ss_pred cccccccCCeeeCCCCCCCCCC---CCcccCCCCCCCEEeCCCCCCCCC----CCc-------cCcCCCCCCEEeCCCCc
Q 043978 30 TLFRLSHLQSLNLAFNNFLGSR---ISPEFGRLKELTYLNPSFSNFGGL----VPS-------EISHLSKLTHLGLSCRV 95 (683)
Q Consensus 30 ~l~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~----~~~-------~~~~l~~L~~L~ls~n~ 95 (683)
.+..+..++.++||+|.+.... +...+.+.++|+..++|+- ++|. +|. ++..+++|++||||.|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3446677888888888874321 2234666778888888753 2222 232 33456678888888776
Q ss_pred Ccccc-CCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCc
Q 043978 96 LTIEQ-RTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLT 174 (683)
Q Consensus 96 ~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 174 (683)
+.... ..+...++++..|++|.|.+|.+.......++. .|.+|.. ....+.-++|+++...+| ++.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~~---------~kk~~~~~~Lrv~i~~rN-rle 170 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELAV---------NKKAASKPKLRVFICGRN-RLE 170 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHHH---------HhccCCCcceEEEEeecc-ccc
Confidence 65221 244555677777777777777665544333332 2222220 012233456666666666 332
Q ss_pred ccCC-----CCCCCCCCCEEECCCCcCcc----ccCccccCCCCCCEEEccCCccccc----CCCCCCCCCCCCeeeccC
Q 043978 175 GYLP-----KCNWSSPLRELDLSLSDFSG----EIPYSIGNLLFLETVDITYCNFMGS----IPTSTGNLSKATEILFAS 241 (683)
Q Consensus 175 ~~~~-----~~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~ 241 (683)
.... .+..++.|+.+.++.|.+.. .+...+..+++|+.||+.+|.++.. +...++.+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2111 34445566666666665532 1223456677777777777766532 233344455666666666
Q ss_pred ccccccCCccc-----cCCCCCCEEEccCCcCc
Q 043978 242 NHLTGQLPHHV-----SGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 242 n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~ 269 (683)
|.+......++ ...++|+.|.+.+|.|+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 65544332222 12345555555555544
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.6e-11 Score=119.54 Aligned_cols=209 Identities=22% Similarity=0.201 Sum_probs=104.7
Q ss_pred CCCCCEEeCCCCCCCCCCC-ccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCC
Q 043978 59 LKELTYLNPSFSNFGGLVP-SEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSST 137 (683)
Q Consensus 59 l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 137 (683)
+++|+.+.|.++.+..... .....|++++.||||.|-+..- ..+...+..+++|+.|+++.|.+..-.........+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4455555555544432211 2334455555555555533211 1222334455555555555555433222222222255
Q ss_pred ccEEEcCCCcCCCC-CCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccC--ccccCCCCCCEEE
Q 043978 138 MTDLDLSGTRIQGN-FPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIP--YSIGNLLFLETVD 214 (683)
Q Consensus 138 L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~ 214 (683)
|+.|.+++|.++.. +...+..+|+|+.|+++.|...........-++.|+.|+|++|.+.. .+ .....++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 66666666655521 11123355666666666652111111133344556666666666542 22 3445666677777
Q ss_pred ccCCcccccC-CCC-----CCCCCCCCeeeccCcccccc-CCccccCCCCCCEEEccCCcCc
Q 043978 215 ITYCNFMGSI-PTS-----TGNLSKATEILFASNHLTGQ-LPHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 215 l~~~~~~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~ 269 (683)
++.+.+...- |+. ...+++|+.|++..|++.+. ....+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7666665421 222 23467778888877777432 2234556677777777777765
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2e-11 Score=112.72 Aligned_cols=198 Identities=20% Similarity=0.130 Sum_probs=113.6
Q ss_pred cCCCcCcEEECCCCcccccCC--CCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCc---ccCCCCccccCCCCCCEE
Q 043978 402 KGWKSLIDLDLSNNFLTHIAL--HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNK---LSGQIPPYICSLSSLKYL 476 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~---i~~~~~~~l~~l~~L~~L 476 (683)
..+.+|..+.++.|.-..+.- ..-+.|.++......+.... ...|.-...+..... ..|........++.|+++
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP-SLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc-cccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 455677777777775433311 12244666655554433211 111111111111110 111112223345667788
Q ss_pred EcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcC
Q 043978 477 SLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 477 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 556 (683)
|+|+|.|+ .+..++.-. +.++.|++++|.|..+ +.+..+++|+.||||+|.++. ..+.=..+-+.++|.++.|.+
T Consensus 290 DLS~N~I~-~iDESvKL~-Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 290 DLSGNLIT-QIDESVKLA-PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred cccccchh-hhhhhhhhc-cceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhH
Confidence 88888776 565555433 4778888888877654 336667778888888887763 333334566677778888777
Q ss_pred CccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 557 NDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 557 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
.+. .+++.+-+|..||+++|+|..... ....+++|.|+++.+.+|++.+
T Consensus 365 E~L--SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 365 ETL--SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhh--hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccc
Confidence 543 446677777778888887754322 2355677777777777777774
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=6.8e-12 Score=125.83 Aligned_cols=171 Identities=29% Similarity=0.383 Sum_probs=83.9
Q ss_pred CCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC--CCCCceEEeCCCCCCCccCC
Q 043978 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH--PWKNIRTLDLRNNKIQGSIL 443 (683)
Q Consensus 366 ~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~l~~~~~ 443 (683)
+.--...+++.|++.++|..+ ..|-.|+.+.+..|.+..++.. .+..|..+|++.|++.....
T Consensus 74 ltdt~~aDlsrNR~~elp~~~---------------~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~ 138 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEA---------------CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPD 138 (722)
T ss_pred ccchhhhhccccccccCchHH---------------HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCCh
Confidence 333445556666665555432 3344455555555555544332 44555556666665542221
Q ss_pred C-CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCc
Q 043978 444 V-PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNI 522 (683)
Q Consensus 444 ~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 522 (683)
. ..--|+.|-+++|+++ .+|..++..+.|..|+.+.|.+. .+|..+..+. +|+.|.++.|++...+++ +. .-.|
T Consensus 139 ~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~~lp~E-l~-~LpL 213 (722)
T KOG0532|consen 139 GLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLEDLPEE-LC-SLPL 213 (722)
T ss_pred hhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhhhCCHH-Hh-CCce
Confidence 1 1122344444444444 34444555555555555555554 4555554444 555555555555433222 22 2235
Q ss_pred cEEEcCCCcccccCchhhhcCCCCcEEEccCCcCC
Q 043978 523 QSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 523 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 557 (683)
..||+++|+++ .+|-.|..+..|++|-|.+|++.
T Consensus 214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 55555555554 44555555555555555555554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=4.2e-10 Score=117.96 Aligned_cols=86 Identities=29% Similarity=0.470 Sum_probs=41.2
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 550 (683)
..|++|.+++|++. ..+..+.... ++..+.+.+|++... +..+..+++++.|++++|+++...+ +..+.+++.|+
T Consensus 209 ~~L~~l~~~~N~~~-~~~~~~~~~~-~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~ 283 (394)
T COG4886 209 SALEELDLSNNSII-ELLSSLSNLK-NLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELD 283 (394)
T ss_pred hhhhhhhhcCCcce-ecchhhhhcc-cccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEe
Confidence 33555555555332 3333344333 455555555554421 3344445555555555555553322 55555555555
Q ss_pred ccCCcCCccCC
Q 043978 551 VGNNMINDTFP 561 (683)
Q Consensus 551 l~~n~l~~~~~ 561 (683)
+++|.+....+
T Consensus 284 ~s~n~~~~~~~ 294 (394)
T COG4886 284 LSGNSLSNALP 294 (394)
T ss_pred ccCccccccch
Confidence 55555554433
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=3e-10 Score=119.12 Aligned_cols=176 Identities=35% Similarity=0.469 Sum_probs=93.9
Q ss_pred CcCcEEECCCCcccccCCC--CCC-CceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCC
Q 043978 405 KSLIDLDLSNNFLTHIALH--PWK-NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN 481 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~--~~~-~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n 481 (683)
+.++.+++.+|.++.+... ... +|+.|++++|.+.. +|..+..++.|+.|++++|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~----------------------l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES----------------------LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh----------------------hhhhhhccccccccccCCc
Confidence 5566666666666665443 221 56666666655553 3344555566666666666
Q ss_pred cCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC
Q 043978 482 NLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561 (683)
Q Consensus 482 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 561 (683)
++. .+|....... .|+.|++++|++.... ........|+++++++|+.. ..+..+..+.++..+.+.+|++.. .+
T Consensus 174 ~l~-~l~~~~~~~~-~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLS-NLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP 248 (394)
T ss_pred hhh-hhhhhhhhhh-hhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc
Confidence 665 4444332222 5666666666665332 22233344666666666433 334455555666666666666543 24
Q ss_pred ccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 562 CWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 562 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
..++.++++++|++++|.++...+ ...+..++.+|+++|.+....|
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccccccc----ccccCccCEEeccCccccccch
Confidence 445556666666666666553321 3455566666666666654443
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=4.4e-12 Score=119.98 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=16.6
Q ss_pred CCccEEEcCCCccccc----CchhhhcCCCCcEEEccCCcC
Q 043978 520 SNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 520 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l 556 (683)
++|+.|.+.+|.++.. +..+....+.|..|+|++|++
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4455555555544421 112233344555555555555
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=4.1e-11 Score=110.76 Aligned_cols=137 Identities=23% Similarity=0.267 Sum_probs=104.1
Q ss_pred CCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEE
Q 043978 229 GNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEV 308 (683)
Q Consensus 229 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L 308 (683)
.....|+++++++|.|+ .+.++..-.|.++.|++++|.+... ..+..+++|+.||+++|.++....+-..+-+++.|
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34567888999998887 4455667778899999999988733 23777899999999999887655555578889999
Q ss_pred ECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChh
Q 043978 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF 385 (683)
Q Consensus 309 ~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~ 385 (683)
.+++|.+.. ...+..+-+|..||+++|+|+.+.. ......+|.|+.+.+.+|.+..+|+.
T Consensus 358 ~La~N~iE~--------------LSGL~KLYSLvnLDl~~N~Ie~lde---V~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 358 KLAQNKIET--------------LSGLRKLYSLVNLDLSSNQIEELDE---VNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred ehhhhhHhh--------------hhhhHhhhhheeccccccchhhHHH---hcccccccHHHHHhhcCCCccccchH
Confidence 999998761 1135667788999999999777633 24456889999999999988877653
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.95 E-value=1.8e-09 Score=118.29 Aligned_cols=107 Identities=26% Similarity=0.464 Sum_probs=59.9
Q ss_pred CCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 473 LKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 473 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
++.|+|++|.+.+.+|..+..+. +|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 45555566555555555555443 55556665555555555555555555555555555555555555555555555555
Q ss_pred CCcCCccCCccccCC-CCCCEEEccCCcC
Q 043978 553 NNMINDTFPCWLGSL-PLLKILILRSNRF 580 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~l 580 (683)
+|.+++.+|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 555555555554432 3444555555543
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.90 E-value=3.9e-09 Score=115.75 Aligned_cols=114 Identities=27% Similarity=0.376 Sum_probs=79.5
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
.++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|++.+.+|.... .....+..+++++|+..+-.|
T Consensus 499 ~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHh-hccccCceEEecCCccccCCC
Confidence 7777776664321 122345667777776655444
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.3e-09 Score=79.62 Aligned_cols=59 Identities=32% Similarity=0.461 Sum_probs=29.5
Q ss_pred CccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCc
Q 043978 521 NIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNR 579 (683)
Q Consensus 521 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 579 (683)
+|+.|++++|+++...+..|..+++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555544444445555555555555555544444445555555555555544
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=1.5e-10 Score=121.38 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=36.4
Q ss_pred ccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCcc---CCcc-ccCCCCCCEE
Q 043978 498 LITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT---FPCW-LGSLPLLKIL 573 (683)
Q Consensus 498 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~-l~~l~~L~~L 573 (683)
|+.+++++|++.... ..+..+..+..|++.+|++... ..+...+.+..+....|.+... .... ....+.++..
T Consensus 234 L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 455555555544221 3344445555555555555422 1233344455555555544321 1111 2344555555
Q ss_pred EccCCcCc
Q 043978 574 ILRSNRFY 581 (683)
Q Consensus 574 ~l~~n~l~ 581 (683)
.+.+|++.
T Consensus 311 ~~~~~~~~ 318 (414)
T KOG0531|consen 311 TLELNPIR 318 (414)
T ss_pred ccccCccc
Confidence 55555554
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=8e-10 Score=123.54 Aligned_cols=317 Identities=22% Similarity=0.163 Sum_probs=177.6
Q ss_pred cEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCC--CCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCC
Q 043978 8 NVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNN--FLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSK 85 (683)
Q Consensus 8 ~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 85 (683)
.++++.+-+ +.+.. +.. -..++.|++|-+.+|. +... ..+.|..++.|++|||++|.-.+.+|..++.+-+
T Consensus 524 ~~rr~s~~~--~~~~~-~~~---~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 524 SVRRMSLMN--NKIEH-IAG---SSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred heeEEEEec--cchhh-ccC---CCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 455565555 44431 221 2344578888888775 3332 3345788888888888887766778888888888
Q ss_pred CCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCC--CCCCccCCCCCCCc
Q 043978 86 LTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQ--GNFPDQIFLLPNLR 163 (683)
Q Consensus 86 L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~--~~~~~~l~~l~~L~ 163 (683)
||+|++++..+. .+|..++++++|.+|++..+.-....+.....+ ++|++|.+...... ...-..+..+.+|+
T Consensus 597 LryL~L~~t~I~----~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L-~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 597 LRYLDLSDTGIS----HLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL-QSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhcccccCCCcc----ccchHHHHHHhhheeccccccccccccchhhhc-ccccEEEeeccccccchhhHHhhhcccchh
Confidence 888888888775 677778888888888888766544446666667 88888888665422 11223345556666
Q ss_pred EEEccCCCCCcccCCCCCCCCCCC----EEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCC------CCC
Q 043978 164 VLYLCGNIHLTGYLPKCNWSSPLR----ELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGN------LSK 233 (683)
Q Consensus 164 ~L~l~~n~~~~~~~~~~~~~~~L~----~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------l~~ 233 (683)
.+..... .. .....+.....|+ .+.+.++... ..+..+..+.+|+.|.+.++.+.......... +++
T Consensus 672 ~ls~~~~-s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 672 NLSITIS-SV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred hheeecc-hh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 6655433 11 1111222222222 3332222222 44556777888888888888776433322211 223
Q ss_pred CCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCc--CCCCCCCCCCcEEECC
Q 043978 234 ATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGP--IDGFQSPNSLEEVHLE 311 (683)
Q Consensus 234 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~~~L~~L~L~ 311 (683)
+..+.+.++... ..+.+..-.++|+.|.+..+.....+......+..+..+.+..+.+... ......++.+..+.+.
T Consensus 749 l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 749 LSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred HHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 333333333322 2233334557888888888876655555555555565555555544432 2222333444333333
Q ss_pred CCcCcccCCccchhccCcccccccCCCCCCCEEeCCCC
Q 043978 312 KNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349 (683)
Q Consensus 312 ~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 349 (683)
.-.+.....+. ......+|.+.++.+.++
T Consensus 828 ~~~l~~~~ve~---------~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 828 FLKLEELIVEE---------CPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred ccchhheehhc---------CcccccCccccccceecc
Confidence 32221100000 012455777777777775
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.6e-09 Score=79.19 Aligned_cols=60 Identities=28% Similarity=0.463 Sum_probs=49.5
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcC
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 556 (683)
+|++|++++|+++.+.+++|.++++|+.|++++|.++...|.+|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 678888888888877778888888888888888888877777888888888888888865
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.6e-09 Score=121.16 Aligned_cols=271 Identities=20% Similarity=0.223 Sum_probs=176.0
Q ss_pred ccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCC--CCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccC
Q 043978 33 RLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSN--FGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNL 110 (683)
Q Consensus 33 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~--~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l 110 (683)
.....|...+-+|.+... +. -...++|++|-+.+|. +..+.++.|..++.|++||+++|.-- ..+|..++++
T Consensus 521 ~~~~~rr~s~~~~~~~~~--~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l---~~LP~~I~~L 594 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI--AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL---SKLPSSIGEL 594 (889)
T ss_pred chhheeEEEEeccchhhc--cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc---CcCChHHhhh
Confidence 345678888877776433 22 2344579999888886 56565666889999999999987543 6789999999
Q ss_pred CCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCccc---CCCCCCCCCCC
Q 043978 111 TKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGY---LPKCNWSSPLR 187 (683)
Q Consensus 111 ~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~ 187 (683)
-+||+|+++++.+... |..+.++ ..|.+|++..+.-...+|.....+++|++|.+... ..... ...+..+.+|+
T Consensus 595 i~LryL~L~~t~I~~L-P~~l~~L-k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s-~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHL-PSGLGNL-KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS-ALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhhcccccCCCcccc-chHHHHH-HhhheeccccccccccccchhhhcccccEEEeecc-ccccchhhHHhhhcccchh
Confidence 9999999999999866 8899999 99999999988766566777778999999999765 21111 11445556666
Q ss_pred EEECCCCcCccccCccccCCCCCC----EEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccC------CCC
Q 043978 188 ELDLSLSDFSGEIPYSIGNLLFLE----TVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSG------LLY 257 (683)
Q Consensus 188 ~L~L~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~ 257 (683)
.+....... .+...+..++.|. .+.+.++.. ...+..+..+.+|+.|.+.++.+......+... +++
T Consensus 672 ~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 672 NLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred hheeecchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 665543332 1111222333333 222222222 245667788999999999999886543333221 223
Q ss_pred CCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC-cCCCCCCCCCCcEEECCCCcCc
Q 043978 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 258 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~L~~L~L~~n~i~ 316 (683)
+..+.+.++... ..+.+....++|+.|.+..+.... .++....+..++++.+..+.+.
T Consensus 749 l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 749 LSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 333334444322 233334457899999999987655 3444345555665555555554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=3.8e-10 Score=118.27 Aligned_cols=200 Identities=24% Similarity=0.249 Sum_probs=123.3
Q ss_pred CCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccCC-CCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcC
Q 043978 403 GWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSIL-VPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLS 479 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls 479 (683)
.+++|+.|++++|.|+.+. ...++.|+.|++++|.|....- ..+..|+.+++++|.+....+ . ...+.+++.++++
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLG 194 (414)
T ss_pred hhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhcc
Confidence 3444444444444444442 2233445555555555543221 125555666666666654433 2 5677888889999
Q ss_pred CCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCC--ccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCC
Q 043978 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASN--IQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 480 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 557 (683)
+|.+.. + ..+.... .+..+++..|.++...+ +..+.. |+.+++++|++. ..+..+..+..+..|++.+|.+.
T Consensus 195 ~n~i~~-i-~~~~~~~-~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 195 GNSIRE-I-EGLDLLK-KLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred CCchhc-c-cchHHHH-HHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 998862 2 2222222 55566888888775422 222333 899999999987 34466778888999999999887
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCCCC--ccccCCCCCcEEeCCCCcCCCCCc
Q 043978 558 DTFPCWLGSLPLLKILILRSNRFYGPLCKS--ITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 558 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
.. ..+...+.+..+....|++....... ......+.++.+.+..|++....+
T Consensus 269 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 269 NL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 54 33567788888888888876332111 124566788889999998876554
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=1.3e-09 Score=112.73 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=101.2
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcc-ccCCCCCCEEEc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW-LGSLPLLKILIL 575 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l 575 (683)
.|.+.+.++|.+.. ...++.-++.|+.|+|++|+++.. +.+..|++|++|||++|.++. +|.. ...+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeeee
Confidence 57778888888873 345667778999999999999854 378889999999999999974 4442 22444 999999
Q ss_pred cCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhccccccccee
Q 043978 576 RSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRL 631 (683)
Q Consensus 576 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~ 631 (683)
++|.++.. ....++.+|+.||+++|-+.+.-.-..+..+..|+.|.+.+|++
T Consensus 240 rnN~l~tL----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99998754 34578899999999999998876666788889999999999987
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.3e-09 Score=100.89 Aligned_cols=178 Identities=18% Similarity=0.082 Sum_probs=84.6
Q ss_pred CCCEEeCCCCCCCCC-CCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCcc-CCcCChh-hhhcCcCC
Q 043978 61 ELTYLNPSFSNFGGL-VPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTN-LSLIKPF-SLLNLSST 137 (683)
Q Consensus 61 ~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~~ 137 (683)
.|++||||...++.. .-..++.|.+|+.|.+.++.+. ..+...+++-.+|+.|+++.+. ++..... .+..+ +.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc-s~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC-SR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC---cHHHHHHhccccceeeccccccccchhHHHHHHHhh-hh
Confidence 355555555444322 1122344555555555555443 3344444555555555555432 2222111 12333 55
Q ss_pred ccEEEcCCCcCCCCCCcc-CC-CCCCCcEEEccCCCCCcc--cCC-CCCCCCCCCEEECCCCc-CccccCccccCCCCCC
Q 043978 138 MTDLDLSGTRIQGNFPDQ-IF-LLPNLRVLYLCGNIHLTG--YLP-KCNWSSPLRELDLSLSD-FSGEIPYSIGNLLFLE 211 (683)
Q Consensus 138 L~~L~l~~n~i~~~~~~~-l~-~l~~L~~L~l~~n~~~~~--~~~-~~~~~~~L~~L~L~~~~-~~~~~~~~~~~l~~L~ 211 (683)
|.+|++++|......-.. +. --++|..|+++|+...-. .+. -...+++|..|||++|. ++......|.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 555555555443221111 11 123555566655521111 111 23456666677776654 2323334566777888
Q ss_pred EEEccCCccc-ccCCCCCCCCCCCCeeeccCc
Q 043978 212 TVDITYCNFM-GSIPTSTGNLSKATEILFASN 242 (683)
Q Consensus 212 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n 242 (683)
+|.++.|... ....-.+...+.|.+|++.++
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8888777532 111223466778888887775
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.6e-09 Score=98.10 Aligned_cols=182 Identities=25% Similarity=0.220 Sum_probs=134.5
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCC-cCccccCCHHHHHccCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCR-VLTIEQRTFDLLASNLTKL 113 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n-~~~~~~~~~~~~~~~l~~L 113 (683)
..|++||||...++...+-..++.+.+|+.|.+.++.+.+.+...+++-.+|+.|+++.+ .++ ..++.-.+.+|+.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t--~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT--ENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc--hhHHHHHHHhhhhH
Confidence 358999999888765445556788899999999999998888888999999999999976 333 23445567899999
Q ss_pred CEEEcCCccCCcCC-hhhhhcCcCCccEEEcCCCcCC--C-CCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCE
Q 043978 114 SLLHLGSTNLSLIK-PFSLLNLSSTMTDLDLSGTRIQ--G-NFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRE 188 (683)
Q Consensus 114 ~~L~L~~n~l~~~~-~~~l~~l~~~L~~L~l~~n~i~--~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~ 188 (683)
..|+++.|.+.... --.+....+.|+.|+++++.-. . .+..-..++++|.+||+++|..+..... .+.+++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 99999998765432 2344555688999999988422 1 1112235789999999999855443322 6778889999
Q ss_pred EECCCCcCccccCc---cccCCCCCCEEEccCCcc
Q 043978 189 LDLSLSDFSGEIPY---SIGNLLFLETVDITYCNF 220 (683)
Q Consensus 189 L~L~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~ 220 (683)
|.++.|... .|. .+...|.|.+|++.++--
T Consensus 343 lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 343 LSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 999988742 343 456788999999987643
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=1.1e-08 Score=105.98 Aligned_cols=180 Identities=22% Similarity=0.260 Sum_probs=122.8
Q ss_pred CCCCCCCceEEeCCCCCCCccCC--CCCCCCcEEEccCCccc----------CCCCccccCCCCCCEEEcCCCcCCCCCC
Q 043978 421 ALHPWKNIRTLDLRNNKIQGSIL--VPPPSTEVFLVSNNKLS----------GQIPPYICSLSSLKYLSLSHNNLSGTIP 488 (683)
Q Consensus 421 ~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~i~----------~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 488 (683)
....|.+|+.|.++++.+....- ..-..|++|.-. +... +.+...+ ....|.+.+.++|.+. .+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-hHH
Confidence 34478899999999998864110 011223333211 1110 1111111 1235788889999987 555
Q ss_pred hhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCC
Q 043978 489 PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLP 568 (683)
Q Consensus 489 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 568 (683)
.++.- .+.|+.|+|++|+++.. +.+..++.|+.|||++|.+.....-....|. |..|.+++|.++.. .++.++.
T Consensus 181 ~SLql-l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQL-LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK 254 (1096)
T ss_pred HHHHH-HHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence 55543 44899999999999866 4788899999999999999844333444554 99999999998754 4578999
Q ss_pred CCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 569 LLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 569 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|+.||+++|-+.+... -..+..+..|+.|+|.+|++-+ -|
T Consensus 255 sL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~c-~p 295 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLCC-AP 295 (1096)
T ss_pred hhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcccc-CH
Confidence 99999999999875432 1234567789999999999973 45
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.6e-07 Score=87.35 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=18.9
Q ss_pred CCCCCeeeccCccccc--cCCccccCCCCCCEEEccCCcCc
Q 043978 231 LSKATEILFASNHLTG--QLPHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 231 l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~ 269 (683)
++.++.+++.+|.+++ .+...+.++|.|+.|+++.|.+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 3455555555555543 12223344555555555555544
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=1.5e-07 Score=86.34 Aligned_cols=201 Identities=17% Similarity=0.128 Sum_probs=88.7
Q ss_pred cccccCCeeeCCCCCCCCCC---CCcccCCCCCCCEEeCCCCCCCCC-----------CCccCcCCCCCCEEeCCCCcCc
Q 043978 32 FRLSHLQSLNLAFNNFLGSR---ISPEFGRLKELTYLNPSFSNFGGL-----------VPSEISHLSKLTHLGLSCRVLT 97 (683)
Q Consensus 32 ~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~-----------~~~~~~~l~~L~~L~ls~n~~~ 97 (683)
..+..+..++||||.|.... +...+.+-++|+..++++- +++. +..++.+|++|+..++|.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34566677777777664321 1223444556666666542 1221 1123445666666666666554
Q ss_pred ccc-CCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCccc
Q 043978 98 IEQ-RTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGY 176 (683)
Q Consensus 98 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 176 (683)
... ..+...+++.+.|++|.+++|.+..+....+++ .|.+|- . -....+-|.|++.....|....+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk---al~~la--~-------nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK---ALFHLA--Y-------NKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH---HHHHHH--H-------HhhhccCCCceEEEeccchhccCc
Confidence 211 122334455555666666555544332222221 011110 0 011223445555555555211111
Q ss_pred CC----CCCCCCCCCEEECCCCcCccc-----cCccccCCCCCCEEEccCCccccc----CCCCCCCCCCCCeeeccCcc
Q 043978 177 LP----KCNWSSPLRELDLSLSDFSGE-----IPYSIGNLLFLETVDITYCNFMGS----IPTSTGNLSKATEILFASNH 243 (683)
Q Consensus 177 ~~----~~~~~~~L~~L~L~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~ 243 (683)
.. .+.....|+.+.+..|.|... +...+..+++|+.||+.+|.++.. +...+...+.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 11 122224556666666555421 111234556666666666655421 12223334445555555554
Q ss_pred cc
Q 043978 244 LT 245 (683)
Q Consensus 244 l~ 245 (683)
++
T Consensus 254 ls 255 (388)
T COG5238 254 LS 255 (388)
T ss_pred hc
Confidence 44
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.15 E-value=4.2e-06 Score=73.86 Aligned_cols=130 Identities=22% Similarity=0.214 Sum_probs=87.9
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
+.+++.+.++. . ...+.........+||++|.+... +.|..++.|.+|.+++|+|+.+.|.--..++.|..|.+.+
T Consensus 22 ~e~~LR~lkip-~-ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-V-IENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-c-hhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 45555555553 1 122333445677888888888644 5677888899999999999887777666678889999999
Q ss_pred CcCCccC-CccccCCCCCCEEEccCCcCcccC-CCCccccCCCCCcEEeCCCCcCC
Q 043978 554 NMINDTF-PCWLGSLPLLKILILRSNRFYGPL-CKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 554 n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
|.|.... -.-+..+|+|++|.+-+|+..... ........+|+|+.||.+.=.-.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 8776431 123567888889988888875321 11234456788888887665443
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.14 E-value=3.9e-08 Score=95.79 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=18.0
Q ss_pred CCCCcEEEccCCcccC--cCCCCCCCCCCcEEECCCCc
Q 043978 279 LPSLVSVNLAWNKLTG--PIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 279 l~~L~~L~L~~n~i~~--~~~~~~~~~~L~~L~L~~n~ 314 (683)
+..|+.+.+++++... ....+..+++|+.+++.+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 4455555665555432 22223345566666655554
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=3.2e-08 Score=96.34 Aligned_cols=298 Identities=17% Similarity=0.096 Sum_probs=184.1
Q ss_pred CcEEEEECCCCCCCccee-ecCCCcccccccCCeeeCCCCC-CCCCCCCcccCCCCCCCEEeCCCCC-CCCCCCc-cCcC
Q 043978 7 GNVIGLDLHGSCSWLRGT-IDDNSTLFRLSHLQSLNLAFNN-FLGSRISPEFGRLKELTYLNPSFSN-FGGLVPS-EISH 82 (683)
Q Consensus 7 ~~v~~L~L~~~~~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~~~-~~~~~~~-~~~~ 82 (683)
+.++.|.++| |-.+... +.. .-..++++++|++.++. +++......-..+++|++|++..|. ++...-. ....
T Consensus 138 g~lk~LSlrG-~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRG-CRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccc-cccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 6788899998 3333221 122 33479999999999886 3333222334567899999998854 4433222 3357
Q ss_pred CCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhc---CcCCccEEEcCCCc-CCCCCC-ccCC
Q 043978 83 LSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLN---LSSTMTDLDLSGTR-IQGNFP-DQIF 157 (683)
Q Consensus 83 l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~~L~~L~l~~n~-i~~~~~-~~l~ 157 (683)
+++|+++++|.+.-. .+.++.....+++.++.+.+.+|.- ...+.+.. ...-+.++++.+|. +++.-. ..-.
T Consensus 215 C~kL~~lNlSwc~qi-~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQI-SGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred hhhHHHhhhccCchh-hcCcchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 899999999987432 2355666778888888887777532 22233322 12446667766663 332211 1123
Q ss_pred CCCCCcEEEccCCCCCcccCC--CCCCCCCCCEEECCCCcC-ccccCcc-ccCCCCCCEEEccCCccccc--CCCCCCCC
Q 043978 158 LLPNLRVLYLCGNIHLTGYLP--KCNWSSPLRELDLSLSDF-SGEIPYS-IGNLLFLETVDITYCNFMGS--IPTSTGNL 231 (683)
Q Consensus 158 ~l~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~~~~-~~~l~~L~~L~l~~~~~~~~--~~~~~~~l 231 (683)
.+..|++|+.+++...++..- --.++.+|+.+.++.|+- +..-... -.+++.|+.+++..+..... +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 577889999888744332211 234568899999988873 2221112 24778899999988765422 22223468
Q ss_pred CCCCeeeccCccccccC-----CccccCCCCCCEEEccCCcCc-ccCCccccCCCCCcEEEccCCcccC--cCCCCC-CC
Q 043978 232 SKATEILFASNHLTGQL-----PHHVSGLLYLTNLDLFGNSLQ-GKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQ-SP 302 (683)
Q Consensus 232 ~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~~-~~ 302 (683)
+.|+.+.+++|...... ...-..+..|..+.++++... +..-+.+..+++|+.+++.+++-.. .+..+. ++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 89999999988653222 222345778999999999754 4555667778999999999886432 222232 55
Q ss_pred CCCcEEEC
Q 043978 303 NSLEEVHL 310 (683)
Q Consensus 303 ~~L~~L~L 310 (683)
++++...+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 65555443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=4.9e-07 Score=84.22 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=28.1
Q ss_pred CCccEEEcCCCccccc-CchhhhcCCCCcEEEccCCcCCccCC--ccccCCCCCCEEEccCCcCc
Q 043978 520 SNIQSFDLNCNKFEGS-LPRSLAKCVKLEVVNVGNNMINDTFP--CWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 520 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~ 581 (683)
+++..+.+..|++... ....+..++.+-.|+|+.|+|.+ +. +.+..+++|..|.++++++.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS-WASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhccccccc-HHHHHHHcCCchhheeeccCCccc
Confidence 4455555555544321 11233444444455555555532 11 13445555555555555554
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=1.1e-06 Score=80.78 Aligned_cols=233 Identities=20% Similarity=0.194 Sum_probs=152.0
Q ss_pred CCCcCcEEECCCCcccccCCC-------CCCCceEEeCCCCCCCcc-------------CCCCCCCCcEEEccCCcccCC
Q 043978 403 GWKSLIDLDLSNNFLTHIALH-------PWKNIRTLDLRNNKIQGS-------------ILVPPPSTEVFLVSNNKLSGQ 462 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~~~~-------~~~~L~~L~l~~n~l~~~-------------~~~~~~~L~~L~l~~n~i~~~ 462 (683)
.+..++.+++|+|.+...... .-.+|+..+++.--.... ....||.++..++|+|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 467899999999988765332 345677777665432211 123688999999999988866
Q ss_pred CCc----cccCCCCCCEEEcCCCcCCC----CCChhhhhc--------cCcccEEECCCCcccccc----cccccCCCCc
Q 043978 463 IPP----YICSLSSLKYLSLSHNNLSG----TIPPCLGNF--------TTQLITLHLKNNSLEGHI----HDTFENASNI 522 (683)
Q Consensus 463 ~~~----~l~~l~~L~~L~Ls~n~i~~----~~~~~~~~~--------~~~L~~L~l~~n~l~~~~----~~~~~~l~~L 522 (683)
.|+ .++.-+.|++|.+++|.+.. .+...++.+ .+.|++.....|++.... ...|..-..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 664 35667789999999987751 122222221 247888888888876432 2334445688
Q ss_pred cEEEcCCCcccccC-----chhhhcCCCCcEEEccCCcCCccC----CccccCCCCCCEEEccCCcCcccCCCC----cc
Q 043978 523 QSFDLNCNKFEGSL-----PRSLAKCVKLEVVNVGNNMINDTF----PCWLGSLPLLKILILRSNRFYGPLCKS----IT 589 (683)
Q Consensus 523 ~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~ 589 (683)
+.+.+.+|.|.... -..+..+.+|+.||+.+|-++-.. ...+..-+.|+.|.+.+|-++..-..+ +.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 88888888876321 124566788999999999776432 223334466888888888876432211 11
Q ss_pred ccCCCCCcEEeCCCCcCCCC------CcHHHHhcchhhcccccccceeeecc
Q 043978 590 TFSFQALRIIDLSRNEFKDF------LPRRNFTSMEAMKNVDEQATRLQYMG 635 (683)
Q Consensus 590 ~~~l~~L~~L~ls~n~~~~~------~p~~~~~~~~~L~~l~l~~n~~~~~~ 635 (683)
-...|+|+.|-..+|.+.+- +|...-..++-|..+...+|++....
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 22467888888888887643 23333356788888888888886654
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=3.5e-07 Score=75.12 Aligned_cols=87 Identities=23% Similarity=0.321 Sum_probs=47.8
Q ss_pred cCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCc
Q 043978 468 CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLE 547 (683)
Q Consensus 468 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 547 (683)
.....|+..+|++|.+. .+|..+....+..+.|++++|+|++. |..+..++.|+.|+++.|++. ..|..+..+.+|-
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 33445555566666665 55555555444556666666665533 333555556666666666555 4455555555555
Q ss_pred EEEccCCcCC
Q 043978 548 VVNVGNNMIN 557 (683)
Q Consensus 548 ~L~l~~n~l~ 557 (683)
.|+..+|.+.
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 5555555554
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=6.3e-07 Score=73.66 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=24.9
Q ss_pred CCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCccc
Q 043978 472 SLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFE 533 (683)
Q Consensus 472 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 533 (683)
.++.|++++|.+. .+|..+..++ .|+.|+++.|.+... |..+..+.++-.|+..+|...
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~-aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMP-ALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhH-HhhhcccccCccccc-hHHHHHHHhHHHhcCCCCccc
Confidence 3444444444444 3444444333 444444444444322 222222444444444444443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=4.4e-05 Score=76.93 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=17.7
Q ss_pred CCccEEEcCCCcccccCchhhhcCCCCcEEEccCC
Q 043978 520 SNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554 (683)
Q Consensus 520 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 554 (683)
++|+.|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666654 3333333 36666666655
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=2.3e-05 Score=69.28 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=54.5
Q ss_pred cEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccc-cccccCCCCccEEEcC
Q 043978 450 EVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHI-HDTFENASNIQSFDLN 528 (683)
Q Consensus 450 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~ 528 (683)
..+++++|.+... +.|..++.|.+|.+.+|+|+ .+.+.+..+.++|..|.+.+|.|.... -+-+..++.|+.|.+-
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3444444444422 34555666666777777666 455555555556666666666654321 1234455666666666
Q ss_pred CCcccccCc---hhhhcCCCCcEEEccCC
Q 043978 529 CNKFEGSLP---RSLAKCVKLEVVNVGNN 554 (683)
Q Consensus 529 ~n~l~~~~~---~~l~~l~~L~~L~l~~n 554 (683)
+|+++..-- ..+..+++|++||.+.=
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 666552211 23455566666665443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.3e-05 Score=53.21 Aligned_cols=34 Identities=41% Similarity=0.571 Sum_probs=13.2
Q ss_pred CcEEEccCCcCCccCCccccCCCCCCEEEccCCcC
Q 043978 546 LEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580 (683)
Q Consensus 546 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 580 (683)
|++|++++|+|++ +|..++++++|++|++++|++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCC
Confidence 4444444444442 222344444444444444443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=5.7e-05 Score=76.19 Aligned_cols=133 Identities=15% Similarity=0.226 Sum_probs=82.8
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCC-cccccccccccCCCCccE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNN-SLEGHIHDTFENASNIQS 524 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 524 (683)
+.+++.|++++|.+.. +|. -..+|++|.+++|.-...+|..+ +++|+.|++++| .+.. .| .+|+.
T Consensus 51 ~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~s-LP------~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISG-LP------ESVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccc-cc------cccce
Confidence 5778899999997774 442 23469999998865444667544 358999999988 5542 22 35788
Q ss_pred EEcCCCcccc--cCchhhhcCCCCcEEEccCCcCCcc--CCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEe
Q 043978 525 FDLNCNKFEG--SLPRSLAKCVKLEVVNVGNNMINDT--FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIID 600 (683)
Q Consensus 525 L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 600 (683)
|+++++.... .+|. +|+.|.+.+++.... .|.. -.++|++|++++|.... .|. .-..+|+.|+
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~----~LP~SLk~L~ 183 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPE----KLPESLQSIT 183 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCccc-Ccc----cccccCcEEE
Confidence 8887766431 2222 567777754331111 1111 12689999999988652 221 1125788888
Q ss_pred CCCCc
Q 043978 601 LSRNE 605 (683)
Q Consensus 601 ls~n~ 605 (683)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 88773
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3e-05 Score=51.52 Aligned_cols=38 Identities=37% Similarity=0.607 Sum_probs=26.8
Q ss_pred CCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCc
Q 043978 520 SNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 520 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 558 (683)
++|++|++++|+++. +|..++++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 467788888888874 45567788888888888887775
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.9e-05 Score=86.61 Aligned_cols=106 Identities=25% Similarity=0.300 Sum_probs=66.9
Q ss_pred CCCCEEeCCCCCCCCC-CCccC-cCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCC
Q 043978 60 KELTYLNPSFSNFGGL-VPSEI-SHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSST 137 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~~-~~~~~-~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 137 (683)
.+|++|++++...... -|..+ ..+|.|++|.+++..+.. ..|.....++++|+.||+|+++++.. ..++.+ ++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L-kn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL--SGISRL-KN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc--HHHhcc-cc
Confidence 4677777777543211 22233 346778877777755442 33566667777777777777777766 566677 77
Q ss_pred ccEEEcCCCcCCC-CCCccCCCCCCCcEEEccCC
Q 043978 138 MTDLDLSGTRIQG-NFPDQIFLLPNLRVLYLCGN 170 (683)
Q Consensus 138 L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n 170 (683)
|++|.+.+=.+.. ..-..+.++++|++||+|..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 7777776655543 11235667777777777765
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.4e-05 Score=87.73 Aligned_cols=136 Identities=17% Similarity=0.241 Sum_probs=93.1
Q ss_pred CCCCEEEcCCCcC-CCCCChhhhhccCcccEEECCCCccccc-ccccccCCCCccEEEcCCCcccccCchhhhcCCCCcE
Q 043978 471 SSLKYLSLSHNNL-SGTIPPCLGNFTTQLITLHLKNNSLEGH-IHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEV 548 (683)
Q Consensus 471 ~~L~~L~Ls~n~i-~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 548 (683)
.+|++|++++... ....|..++...|+|+.|.+++-.+... ....+.++++|..||+|+..++.. .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4678888877643 2244555666677888888888766432 334566778889999998888744 67888888888
Q ss_pred EEccCCcCCc-cCCccccCCCCCCEEEccCCcCcccCCC----CccccCCCCCcEEeCCCCcCCC
Q 043978 549 VNVGNNMIND-TFPCWLGSLPLLKILILRSNRFYGPLCK----SITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 549 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
|.+.+=.+.. ..-..+.+|++|+.||+|.-+....... ......+|.|+.||.|+..+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 8887776653 1222455788899999988875432200 0122358899999999888764
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.63 E-value=0.00018 Score=61.98 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=49.4
Q ss_pred CcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 496 TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 496 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
++|+.+.+.. .+..+...+|.++++|+.+++.++ +......+|..+++|+.+.+.+ .+.......|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 3566666553 344455566666666666666664 5445555666666677777754 333344455666666766666
Q ss_pred cCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhh
Q 043978 576 RSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAM 621 (683)
Q Consensus 576 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L 621 (683)
..+ +..... ..+... .|+.+.+.. .+. .++...|.++++|
T Consensus 89 ~~~-~~~i~~--~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGS--SSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHT--TTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred Ccc-ccEEch--hhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 554 321111 233444 666666665 333 3566677766655
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.60 E-value=0.0002 Score=61.62 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=35.5
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
+.+|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+....+++.+.+.+ .+.......|..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 33444444432 233233344555555555555443 32 33333333333455555543 3333333444445555555
Q ss_pred EcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 526 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
++..+ +.......|.++ +|+.+.+..
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55443 333333444444 455555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.00018 Score=66.82 Aligned_cols=80 Identities=28% Similarity=0.307 Sum_probs=38.3
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCC--cccccCchhhhcCCCCcEEEccCCcCCccCCcc---ccCCCCCC
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN--KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW---LGSLPLLK 571 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~ 571 (683)
.|+.|.+.+..++.. ..|..+++|+.|.++.| .+.+.++.....+++|++|++++|++.. +.. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 455555555554432 33444555666666666 3333333333444556666666665543 111 22334444
Q ss_pred EEEccCCcC
Q 043978 572 ILILRSNRF 580 (683)
Q Consensus 572 ~L~l~~n~l 580 (683)
.|++.+|.-
T Consensus 120 ~Ldl~n~~~ 128 (260)
T KOG2739|consen 120 SLDLFNCSV 128 (260)
T ss_pred hhhcccCCc
Confidence 555555543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00011 Score=68.12 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=45.3
Q ss_pred cCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCC-hhhhhcC
Q 043978 56 FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIK-PFSLLNL 134 (683)
Q Consensus 56 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l 134 (683)
...+..|+.|++.+..++.. ..|-.+++|++|++|.|..... ..++..+.++++|+++++++|.+..+. ...+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 34445555555555554443 3445566666666666622211 334444455566666666666554321 1233444
Q ss_pred cCCccEEEcCCCcCC
Q 043978 135 SSTMTDLDLSGTRIQ 149 (683)
Q Consensus 135 ~~~L~~L~l~~n~i~ 149 (683)
++|..|++..|..+
T Consensus 116 -~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 116 -ENLKSLDLFNCSVT 129 (260)
T ss_pred -cchhhhhcccCCcc
Confidence 55556666555544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=1.7e-05 Score=73.53 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=47.6
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC-ccccCCCCCCEEEc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP-CWLGSLPLLKILIL 575 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l 575 (683)
+.+.|+..+|.++++ .....++.|+.|.|+=|+++... .|..|++|++|+|..|.|.+... ..+.++|+|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445566666666543 33445666666666666665432 36666667777776666654321 13446666777777
Q ss_pred cCCcCcc
Q 043978 576 RSNRFYG 582 (683)
Q Consensus 576 ~~n~l~~ 582 (683)
..|+-.+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 6666543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.61 E-value=0.00012 Score=79.23 Aligned_cols=60 Identities=33% Similarity=0.354 Sum_probs=25.5
Q ss_pred CCccEEEcCCCc-CCCCCCccCC-CCCCCcEEEccCCCCCccc-C-CCCCCCCCCCEEECCCCc
Q 043978 136 STMTDLDLSGTR-IQGNFPDQIF-LLPNLRVLYLCGNIHLTGY-L-PKCNWSSPLRELDLSLSD 195 (683)
Q Consensus 136 ~~L~~L~l~~n~-i~~~~~~~l~-~l~~L~~L~l~~n~~~~~~-~-~~~~~~~~L~~L~L~~~~ 195 (683)
++|+.|+++++. +++..-..+. .+++|++|.+.+|..+++. + .....++.|++|++++|.
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 555555555554 3332222222 2455555554444211111 1 123334455555555554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00031 Score=76.12 Aligned_cols=238 Identities=21% Similarity=0.098 Sum_probs=111.2
Q ss_pred CCCCCCEEeCCCCCCCCC--CCccCcCCCCCCEEeCCCC--cCccccCCHHHHHccCCCCCEEEcCCcc-CCcCChhhhh
Q 043978 58 RLKELTYLNPSFSNFGGL--VPSEISHLSKLTHLGLSCR--VLTIEQRTFDLLASNLTKLSLLHLGSTN-LSLIKPFSLL 132 (683)
Q Consensus 58 ~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~ls~n--~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 132 (683)
.++.|+.|.+.++.-... .......+++|+.|+++++ ...............+++|+.|+++++. +++..-..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666666542222 1234455677777777652 1111111122344556777777777666 5555555555
Q ss_pred cCcCCccEEEcCCCc-CCCCCC-ccCCCCCCCcEEEccCCCCCccc-CC-CCCCCCCCCEEECCCCcCccccCccccCCC
Q 043978 133 NLSSTMTDLDLSGTR-IQGNFP-DQIFLLPNLRVLYLCGNIHLTGY-LP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLL 208 (683)
Q Consensus 133 ~l~~~L~~L~l~~n~-i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~ 208 (683)
...++|++|.+.+|. +++..- .....++.|++|++++|..++.. .. ....+++++.+.+....- ++
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 533677777766665 443222 22345667777777777443221 11 223345555544332211 33
Q ss_pred CCCEEEccCCccc---ccCCCCCCCCCCCCeeeccCccccccC-CccccCCCCCCEEEccCCcCcccCCccccCCCCCcE
Q 043978 209 FLETVDITYCNFM---GSIPTSTGNLSKATEILFASNHLTGQL-PHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVS 284 (683)
Q Consensus 209 ~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 284 (683)
.++.+.+..+... .........+++++.+.+..+...... ...+.+++.|. ..+... ......++.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l~~ 405 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDSLRV 405 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCccce
Confidence 3444443332221 111223445666666666665533222 13334444441 111111 111122667
Q ss_pred EEccCCcccCcC--CCCC-CCCCCcEEECCCCcC
Q 043978 285 VNLAWNKLTGPI--DGFQ-SPNSLEEVHLEKNQI 315 (683)
Q Consensus 285 L~L~~n~i~~~~--~~~~-~~~~L~~L~L~~n~i 315 (683)
|+++.+...... .... ....++.+++.++..
T Consensus 406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred EecccCccccccchHHHhhhhhccccCCccCccc
Confidence 777766543211 1111 145566666666654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0017 Score=60.71 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=80.0
Q ss_pred CCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcE
Q 043978 519 ASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRI 598 (683)
Q Consensus 519 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 598 (683)
+.+.+.|++.+|.+.++ .....++.|++|.||-|.|+..-| |..+++|+.|+|+.|.|.... +-.-+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sld-EL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLD-ELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHH-HHHHHhcCchhhh
Confidence 55788999999999864 346789999999999999986544 789999999999999986432 2234568899999
Q ss_pred EeCCCCcCCCCCcH----HHHhcchhhcccc
Q 043978 599 IDLSRNEFKDFLPR----RNFTSMEAMKNVD 625 (683)
Q Consensus 599 L~ls~n~~~~~~p~----~~~~~~~~L~~l~ 625 (683)
|.|..|+-.+.-+. ..+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998766553 2455567777776
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.61 E-value=0.00032 Score=73.79 Aligned_cols=61 Identities=26% Similarity=0.237 Sum_probs=32.2
Q ss_pred ccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC-------C-CCCceEEeCCCCCCC
Q 043978 369 LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH-------P-WKNIRTLDLRNNKIQ 439 (683)
Q Consensus 369 L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-------~-~~~L~~L~l~~n~l~ 439 (683)
+..+.+.+|.+..-.... +... ....+.|..|++++|.+.+.... . -..++.|++..|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~---------l~~~-l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~ 157 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEE---------LAQA-LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLT 157 (478)
T ss_pred HHHhhhhhCccccchHHH---------HHHH-hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccc
Confidence 777777777776433211 1111 14556677777777777643211 1 133455555555554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.53 E-value=0.015 Score=31.86 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=4.9
Q ss_pred CcEEEccCCcCC
Q 043978 546 LEVVNVGNNMIN 557 (683)
Q Consensus 546 L~~L~l~~n~l~ 557 (683)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.98 E-value=0.027 Score=30.88 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=9.6
Q ss_pred ccEEEcCCCcccccCchhhh
Q 043978 522 IQSFDLNCNKFEGSLPRSLA 541 (683)
Q Consensus 522 L~~L~L~~n~l~~~~~~~l~ 541 (683)
|+.||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555555555555 3343343
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.74 E-value=0.0004 Score=73.04 Aligned_cols=189 Identities=20% Similarity=0.199 Sum_probs=102.0
Q ss_pred CCCCcEEEccCCcccCC----CCccccCCCC-CCEEEcCCCcCCCC----CChhhhhccCcccEEECCCCccccc----c
Q 043978 446 PPSTEVFLVSNNKLSGQ----IPPYICSLSS-LKYLSLSHNNLSGT----IPPCLGNFTTQLITLHLKNNSLEGH----I 512 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~----~~~~l~~l~~-L~~L~Ls~n~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~ 512 (683)
..++++|.+++|.++.. ....+...++ +..|++..|.+.+. +.+.+......++.++++.|.|++. .
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34455555555555421 1123444555 66788888888643 2233333324678889999988764 3
Q ss_pred cccccCCCCccEEEcCCCcccccCc----hhhhcCCCCcEEEccCCcCCccCCcc-------------------------
Q 043978 513 HDTFENASNIQSFDLNCNKFEGSLP----RSLAKCVKLEVVNVGNNMINDTFPCW------------------------- 563 (683)
Q Consensus 513 ~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~------------------------- 563 (683)
......++.++.+.+++|++..... ..+.....+..+-+.++......+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEE 362 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHH
Confidence 3455667788899999888864322 23334455666677655443322110
Q ss_pred --------ccC-CCCCCEEEccCCcCcccC--CCCccccCCCCCcEEeCCCCcCCCCCcHHHH----hcchhhccccccc
Q 043978 564 --------LGS-LPLLKILILRSNRFYGPL--CKSITTFSFQALRIIDLSRNEFKDFLPRRNF----TSMEAMKNVDEQA 628 (683)
Q Consensus 564 --------l~~-l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~----~~~~~L~~l~l~~ 628 (683)
..+ -+.+..+++..+.+.+.. .........+.+.+++++.|.....-+...+ .+. .+..+.++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~ 441 (478)
T KOG4308|consen 363 GLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSR 441 (478)
T ss_pred HHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhcc
Confidence 011 112444444444432211 0112334456777888888877544332222 233 567777777
Q ss_pred ceeeecc
Q 043978 629 TRLQYMG 635 (683)
Q Consensus 629 n~~~~~~ 635 (683)
|++++.+
T Consensus 442 ~~~~~~~ 448 (478)
T KOG4308|consen 442 NPITALG 448 (478)
T ss_pred Chhhhcc
Confidence 7776655
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.59 E-value=0.07 Score=30.64 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=17.3
Q ss_pred CCCCcEEeCCCCcCCCCCcHHHHh
Q 043978 593 FQALRIIDLSRNEFKDFLPRRNFT 616 (683)
Q Consensus 593 l~~L~~L~ls~n~~~~~~p~~~~~ 616 (683)
+++|++|++++|+|+ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 57777764
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.59 E-value=0.07 Score=30.64 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=17.3
Q ss_pred CCCCcEEeCCCCcCCCCCcHHHHh
Q 043978 593 FQALRIIDLSRNEFKDFLPRRNFT 616 (683)
Q Consensus 593 l~~L~~L~ls~n~~~~~~p~~~~~ 616 (683)
+++|++|++++|+|+ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 57777764
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.94 E-value=0.07 Score=27.07 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=5.1
Q ss_pred CccEEEcccCCCCC
Q 043978 368 SLLKLSFSNCNVSE 381 (683)
Q Consensus 368 ~L~~L~l~~~~l~~ 381 (683)
+|+.|++++|++++
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=0.015 Score=52.07 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=47.9
Q ss_pred CcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCC-ChhhhhccCcccEEECCCC-cccccccccccCCCCccEEE
Q 043978 449 TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTI-PPCLGNFTTQLITLHLKNN-SLEGHIHDTFENASNIQSFD 526 (683)
Q Consensus 449 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 526 (683)
++.++-+++.|....-+.+..+++++.|.+.+|.-.+.. -..+....++|+.|++++| +|++..-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344555555555444455667777777777777643211 1122333457777777777 56655555566666666666
Q ss_pred cCCCc
Q 043978 527 LNCNK 531 (683)
Q Consensus 527 L~~n~ 531 (683)
+.+=+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 65544
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=0.055 Score=48.59 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=16.8
Q ss_pred CccEEEcCCCcccccCchhhhcCCCCcEEEccCC
Q 043978 521 NIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554 (683)
Q Consensus 521 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 554 (683)
.++.+|.++..+....-+-+.++++++.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3455555555554444444444555555555544
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.98 E-value=0.36 Score=27.61 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=5.6
Q ss_pred CccEEEcCCCccc
Q 043978 521 NIQSFDLNCNKFE 533 (683)
Q Consensus 521 ~L~~L~L~~n~l~ 533 (683)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.98 E-value=0.36 Score=27.61 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=5.6
Q ss_pred CccEEEcCCCccc
Q 043978 521 NIQSFDLNCNKFE 533 (683)
Q Consensus 521 ~L~~L~L~~n~l~ 533 (683)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.89 E-value=0.31 Score=27.29 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=2.9
Q ss_pred cEEEccCCc
Q 043978 547 EVVNVGNNM 555 (683)
Q Consensus 547 ~~L~l~~n~ 555 (683)
++|++++|.
T Consensus 5 ~~L~l~~n~ 13 (24)
T PF13516_consen 5 ETLDLSNNQ 13 (24)
T ss_dssp SEEE-TSSB
T ss_pred CEEEccCCc
Confidence 333333333
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.71 E-value=0.045 Score=50.11 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=43.0
Q ss_pred cCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCc
Q 043978 468 CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLE 547 (683)
Q Consensus 468 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 547 (683)
......+.||++.|++. .+...+.-.. .|..|+++.|++. ..|..+.....+..+++..|..+ ..|.++...+.++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 33445555666665554 2333333222 4555555555554 34445555555555555555554 4455555555555
Q ss_pred EEEccCCcC
Q 043978 548 VVNVGNNMI 556 (683)
Q Consensus 548 ~L~l~~n~l 556 (683)
++++-.|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555555554
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.12 E-value=0.057 Score=49.43 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=62.2
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
..+.||++.|++.. ....|+-++.|..|+++.|++. ..|..+.....+..+++..|... ..|..+...+.++.+++.
T Consensus 43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 67788888887653 2345666778888888888886 66777888778888888877776 577778888888888888
Q ss_pred CCcCc
Q 043978 577 SNRFY 581 (683)
Q Consensus 577 ~n~l~ 581 (683)
+|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88764
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.77 E-value=3.5 Score=23.65 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=6.4
Q ss_pred CCcEEEccCCcCC
Q 043978 545 KLEVVNVGNNMIN 557 (683)
Q Consensus 545 ~L~~L~l~~n~l~ 557 (683)
+|++|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4455555555543
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.52 E-value=16 Score=37.76 Aligned_cols=108 Identities=13% Similarity=0.006 Sum_probs=51.8
Q ss_pred CCCEEEccCCcccccCCCC--CCCCCCCCeeeccCcccccc-CCccc--------cCCCCCCEEEccCCcCcccCCc---
Q 043978 209 FLETVDITYCNFMGSIPTS--TGNLSKATEILFASNHLTGQ-LPHHV--------SGLLYLTNLDLFGNSLQGKVPS--- 274 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~l--------~~l~~L~~L~l~~n~l~~~~~~--- 274 (683)
.++++...+|...+..... ...-+..+.+++.+..-... .+... ...--+..+.++.+......-.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 3666666666665543322 22334555555544322100 00000 1122356667777766532222
Q ss_pred cccCCCCCcEEEccCCcccCcC-----CCCCCCCCCcEEECCCCcCc
Q 043978 275 WLFTLPSLVSVNLAWNKLTGPI-----DGFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 275 ~l~~l~~L~~L~L~~n~i~~~~-----~~~~~~~~L~~L~L~~n~i~ 316 (683)
....-+.+.+|++++|...... ........++.+..+.|...
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 2233567888888888765422 12223445666666666543
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.40 E-value=3.7 Score=23.48 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=12.0
Q ss_pred CCccEEEcccCCCCCcCh
Q 043978 367 PSLLKLSFSNCNVSEFPS 384 (683)
Q Consensus 367 ~~L~~L~l~~~~l~~~p~ 384 (683)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356677777777776665
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.12 E-value=5 Score=23.40 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=9.1
Q ss_pred CCCcEEEccCCcCCc
Q 043978 544 VKLEVVNVGNNMIND 558 (683)
Q Consensus 544 ~~L~~L~l~~n~l~~ 558 (683)
++|++|+|++|.+.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666654
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.12 E-value=48 Score=34.58 Aligned_cols=106 Identities=24% Similarity=0.165 Sum_probs=48.1
Q ss_pred CCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCC---CCCCCCCCEEECCCCcCccccCccccCC---CC
Q 043978 136 STMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPK---CNWSSPLRELDLSLSDFSGEIPYSIGNL---LF 209 (683)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~~~~~~~l---~~ 209 (683)
+.+++++++.|.+....|-.+..-.. -+.++.|......+.. -..-..+.+++++.|...+.+|..+..+ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 56666777777666554443332110 0334444222222220 0111346677777776665555543322 23
Q ss_pred CCEEEccCCccccc---CCCCCCCCCCCCeeeccCcc
Q 043978 210 LETVDITYCNFMGS---IPTSTGNLSKATEILFASNH 243 (683)
Q Consensus 210 L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~n~ 243 (683)
++.++.+...+.-. .+-..+.-++++..+++.|.
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCC
Confidence 55555555443311 12223334556666665543
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.97 E-value=8.5 Score=40.59 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=16.1
Q ss_pred CCCCEEeCCCCCccccccccccccccCCCCccEEEcccC
Q 043978 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377 (683)
Q Consensus 339 ~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 377 (683)
+.+..+.+++|++..+. +........|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchh--hhhHHHHhcchhheeecccc
Confidence 34444445555544431 11112224455555555555
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=43.77 E-value=17 Score=20.57 Aligned_cols=11 Identities=64% Similarity=0.857 Sum_probs=5.0
Q ss_pred CCCcEEEccCC
Q 043978 160 PNLRVLYLCGN 170 (683)
Q Consensus 160 ~~L~~L~l~~n 170 (683)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.53 E-value=12 Score=39.67 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=44.2
Q ss_pred hcCCCCcEEEccCCcCCccCCc-cc-cCCCCCCEEEccCC--cCcccCCCCccccCCCCCcEEeCCCCcCCCC
Q 043978 541 AKCVKLEVVNVGNNMINDTFPC-WL-GSLPLLKILILRSN--RFYGPLCKSITTFSFQALRIIDLSRNEFKDF 609 (683)
Q Consensus 541 ~~l~~L~~L~l~~n~l~~~~~~-~l-~~l~~L~~L~l~~n--~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 609 (683)
.+.+.+..+.+++|++.....- .+ +.-|+|+.|+|++| .+... .+..-.....|++|-+.+|++...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 3456788889999988754211 11 25589999999999 33322 112223456788999999999643
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.21 E-value=28 Score=44.62 Aligned_cols=45 Identities=18% Similarity=0.019 Sum_probs=35.1
Q ss_pred EccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchh
Q 043978 574 ILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEA 620 (683)
Q Consensus 574 ~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~ 620 (683)
||++|+|....+ ..+..+++|+.|+|++|++.+.+.-.+|..+-.
T Consensus 1 DLSnN~LstLp~--g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~ 45 (2740)
T TIGR00864 1 DISNNKISTIEE--GICANLCNLSEIDLSGNPFECDCGLARLPRWAE 45 (2740)
T ss_pred CCCCCcCCccCh--HHhccCCCceEEEeeCCccccccccHHHHHHHH
Confidence 588999985543 456678999999999999998888767765533
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.27 E-value=52 Score=42.43 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=25.3
Q ss_pred EcCCCcccccCchhhhcCCCCcEEEccCCcCCc
Q 043978 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 526 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 558 (683)
||++|+|+.+.+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 577888877777777788888888888887753
Done!